RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17048
(103 letters)
>gnl|CDD|148734 pfam07297, DPM2, Dolichol phosphate-mannose biosynthesis
regulatory protein (DPM2). This family consists of
several eukaryotic dolichol phosphate-mannose
biosynthesis regulatory (DPM2) proteins. Biosynthesis
of glycosylphosphatidylinositol and N-glycan precursor
is dependent upon a mannosyl donor, dolichol
phosphate-mannose (DPM). DPM2, an 84 amino acid
membrane protein expressed in the endoplasmic reticulum
(ER), makes a complex with DPM1 that is essential for
the ER localisation and stable expression of DPM1.
Moreover, DPM2 enhances binding of dolichol phosphate,
a substrate of DPM synthase. Biosynthesis of DPM in
mammalian cells is regulated by DPM2.
Length = 80
Score = 47.0 bits (112), Expect = 2e-08
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALIIPCALISGLI 63
D +G +LA + I F YYT+WV PF++ D I +F P +YA+ IP +I+GL+
Sbjct: 5 DRLVGLGLLAVSLIIFTYYTIWVILLPFVDSDHVIHS---FFLPREYAIRIP--VIAGLL 59
Query: 64 GCL 66
L
Sbjct: 60 LLL 62
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 28.2 bits (63), Expect = 0.76
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 52 LIIPCALISGLIGCLYAFTCTFYITAYTKI 81
LI+ A + + LYAF A ++
Sbjct: 27 LILLVAALVVGLAVLYAFLAPPIYEADAQL 56
>gnl|CDD|217194 pfam02706, Wzz, Chain length determinant protein. This family
includes proteins involved in lipopolysaccharide (lps)
biosynthesis. This family comprises the whole length of
chain length determinant protein (or wzz protein) that
confers a modal distribution of chain length on the
O-antigen component of lps. This region is also found
as part of bacterial tyrosine kinases.
Length = 139
Score = 26.9 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 52 LIIPCALISGLIGCLYAFTCTFYITAYTKI 81
LII L+ L+ YAF TA +I
Sbjct: 18 LIILVTLLFALLAAAYAFLAPPKYTATAQI 47
>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
Length = 387
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 27 FATPFIEPDTAILD--IRYYFPPIQYA 51
F +P ++P A+LD Y PP Q A
Sbjct: 163 FHSPHVQPVFAVLDPVYTYTLPPRQVA 189
>gnl|CDD|133123 cd06592, GH31_glucosidase_KIAA1161, KIAA1161 is an uncharacterized
Homo sapiens protein with a glycosyl hydrolase family 31
(GH31) domain that is homologous to the Escherichia coli
YihQ glucosidase. Orthologs of KIA1161 are found in
eukaryotes and prokaryotes. In bacteria, YihQ (along
with YihO) is important for bacterial O-antigen capsule
assembly and translocation. Enzymes of the GH31 family
possess a wide range of different hydrolytic activities
including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 303
Score = 24.9 bits (55), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 53 IIPCALISGLIGCLYAFTC 71
+IP AL GL+G Y F
Sbjct: 233 LIPTALTMGLLG--YPFVL 249
>gnl|CDD|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated.
Length = 603
Score = 25.1 bits (56), Expect = 8.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 70 TCTFYITA 77
TCTFY TA
Sbjct: 220 TCTFYGTA 227
>gnl|CDD|130728 TIGR01667, YCCS_YHJK, integral membrane protein, YccS/YhfK family.
This model represents two clades of putative
transmembrane proteins including the E. coli YccS and
YhfK proteins. The YccS hypothetical equivalog
(TIGR01666) is found in beta and gamma proteobacteria,
while the smaller YhfK group is only found in E. coli,
Salmonella and Yersinia. TMHMM on the 19 hits to this
model shows a consensus of 11 transmembrane helices
separated into two clusters, an N-terminal cluster of 6
and a central cluster of 5. This would indicate two
non-membrane domains one on each side of the membrane.
Length = 701
Score = 25.2 bits (55), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 50 YALIIPCALISGLIGCLYAFTCTFYI 75
I+P LI LIGCL A+ Y+
Sbjct: 499 EQYILP-RLIDTLIGCLIAWGAVSYL 523
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.335 0.149 0.509
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,311,990
Number of extensions: 459841
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 63
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.1 bits)