RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17048
         (103 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 1.6
 Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 27/52 (51%)

Query: 3  EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALII 54
          E   + KL  +      LY             D+A        P    AL I
Sbjct: 18 EKQALKKLQASLK----LY-----------ADDSA--------P----ALAI 42


>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
           FAB complex, membrane protein; 2.51A {Escherichia coli}
           SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
           2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
           2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
          Length = 465

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 45  FPPIQYALIIPCALISGLIGCLYAFTCTFYITAYTKIW 82
            P     L +   +I G+ G ++            ++ 
Sbjct: 247 APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH 284


>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
           transport protein; 3.20A {Synechocystis} PDB: 3q17_A
          Length = 466

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 4/37 (10%), Positives = 14/37 (37%)

Query: 45  FPPIQYALIIPCALISGLIGCLYAFTCTFYITAYTKI 81
            P     + I   ++ G++G  +       +  + ++
Sbjct: 242 VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRL 278


>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA
          binding protein; 2.75A {Homo sapiens}
          Length = 164

 Score = 24.2 bits (52), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 29 TPFIEPDTAIL-----DIRYYFPPIQYALIIPCALISGL 62
          +P++ PDT  L      IR      ++ +IIP  +I GL
Sbjct: 2  SPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGL 40


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.149    0.509 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,607,705
Number of extensions: 80214
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 22
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.9 bits)