RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17048
         (103 letters)



>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 23.0 bits (49), Expect = 9.2
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 32  IEPDTAILDIRYYFPPIQYALIIPCALISGLIGC 65
           +  D   +D  Y    +Q A  I  +     + C
Sbjct: 232 VAEDVFTMDYNYPLCALQ-AFAIALSSFDSKLAC 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.149    0.509 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,995
Number of extensions: 16543
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 9
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.1 bits)