BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1705
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 168/286 (58%), Gaps = 14/286 (4%)
Query: 30 KKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRL----THSRIRRT 85
++L W+ N K I HN EA G+H Y L NHL D+ +++MT L +HSR T
Sbjct: 31 RRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDT 90
Query: 86 LVRSPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEEL 145
L PE PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ L
Sbjct: 91 LY-IPEWEGRA--PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNL 147
Query: 146 SIQQVVDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVD 205
S Q +VDC +S N GC GG + N YVQ G+ E+ YPY G++ C +
Sbjct: 148 SPQNLVDC--VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAK 205
Query: 206 ISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLL 265
+ +P +E ALK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L
Sbjct: 206 CRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLA 265
Query: 266 VGY----TRNSWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
VGY WI+KN W +WG+ GY+ + R NN CGIAN A +
Sbjct: 266 VGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASF 311
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 161/290 (55%), Gaps = 14/290 (4%)
Query: 30 KKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTLV-R 88
++ W+ N K I HNQE ++G H +T+ N D+ + + M L + + R+ V +
Sbjct: 27 RRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGLQNRKPRKGKVFQ 86
Query: 89 SPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQ 148
P E+ P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q
Sbjct: 87 EPLFYEA---PRSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQ 143
Query: 149 QVVDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISS 208
+VDCS GN GC GG + YVQ GGL EE YPY+ + CK+ P V +
Sbjct: 144 NLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDA 202
Query: 209 WSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY 268
V P+ E AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY
Sbjct: 203 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY 262
Query: 269 TRNS--------WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
S W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 263 GFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 160/290 (55%), Gaps = 14/290 (4%)
Query: 30 KKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTLV-R 88
++ W+ N K I HNQE ++G H +T+ N D+ + + M + + R+ V +
Sbjct: 31 RRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQ 90
Query: 89 SPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQ 148
P E+ P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q
Sbjct: 91 EPLFYEA---PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQ 147
Query: 149 QVVDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISS 208
+VDCS GN GC GG + YVQ GGL EE YPY+ + CK+ P V +
Sbjct: 148 NLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY-NPKYSVANDA 206
Query: 209 WSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY 268
V P+ E AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY
Sbjct: 207 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY 266
Query: 269 TRNS--------WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
S W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 267 GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 9/218 (4%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR+KG++TP NQ+ CG+C+AFS A++GQ+F+ T ++ LS Q +VDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
GN GC GG + YV+ GGL EE YPY ICK++ N V + ++V+ P E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY------TRN 271
AL +ATVGPI+V+++A +FQ Y SGIY + C+S ++H +L+VGY + N
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 272 S--WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVY 306
S W++KN W WG NGY+ + K NN CGIA A Y
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 135/218 (61%), Gaps = 9/218 (4%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR+KG++TP NQ+ CG+ +AFS A++GQ+F+ T ++ LS Q +VDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
GN GC GG + YV+ GGL EE YPY ICK++ N V + ++V+ P E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY------TRN 271
AL +ATVGPI+V+++A +FQ Y SGIY + C+S ++H +L+VGY + N
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 272 S--WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVY 306
S W++KN W WG NGY+ + K NN CGIA A Y
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+REKG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSE 59
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G++ C + + +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS----WI 274
ALK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L VGY + WI
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWI 179
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W +WG GY+ + R NN CGIAN A +
Sbjct: 180 IKNSWGENWGMGGYIKMARNKNNACGIANLASF 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSE 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G++ C + + +P +E
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 121
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSWI 274
ALK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L VGY WI
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 181
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W +WG+ GY+ + R NN CGIAN A +
Sbjct: 182 IKNSWGENWGNKGYILMARNKNNACGIANLASF 214
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSE 59
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G++ C + + +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSWI 274
ALK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L VGY WI
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W +WG+ GY+ + R NN CGIAN A +
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASF 212
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSE 58
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G++ C + + +P +E
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 118
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSWI 274
ALK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L VGY WI
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 178
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W +WG+ GY+ + R NN CGIAN A +
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASF 211
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 130/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSE 59
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G+ C + + +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSWI 274
ALK +A VGP++V+I+AS +FQ Y+ G+Y DE C+SD +NHA+L VGY WI
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W WG+ GY+ + R NN CGIAN A +
Sbjct: 180 IKNSWGESWGNKGYILMARNKNNACGIANLASF 212
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 7/213 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
PD +D+R+KG++TP NQ CG+C+AFS A++GQ+ K+T + L+ Q +VDC +S
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDC--VSE 59
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + N YVQ G+ E+ YPY G+ C + + +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEA 119
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS----WI 274
ALK +A VGP++V+I+AS +FQ Y++G+Y DE C+SD +NHA+L VGY + WI
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWI 179
Query: 275 LKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
+KN W WG+ GY+ + R NN CGIAN A +
Sbjct: 180 IKNSWGESWGNAGYILMARNKNNACGIANLASF 212
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 100 DHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGN 159
D +D+R+KG++TP NQ CG+C+AFS A++GQ+ K T ++ LS Q +VDC +S N
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSEN 58
Query: 160 LGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEHA 219
GC GG + N YVQ G+ E+ YPY G++ C + + +P +E A
Sbjct: 59 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKA 118
Query: 220 LKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSWIL 275
LK +A VGP++V+I+AS +FQ Y+ G+Y DE+C SD +NHA+L VGY WI+
Sbjct: 119 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 178
Query: 276 KNWWSHHWGDNGYMYLKRG-NNRCGIANYAVY 306
KN W +WG+ GY+ + R NN CGIAN A +
Sbjct: 179 KNSWGENWGNKGYILMARNKNNACGIANLASF 210
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 143/260 (55%), Gaps = 14/260 (5%)
Query: 60 NHLSDLHPRHYIKEMTRLTHSRIRRTLV-RSPESNESVLIPDHLDWREKGFITPDWNQED 118
N D+ + + M + + R+ V + P E+ P +DWREKG++TP NQ
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEA---PRSVDWREKGYVTPVKNQGQ 59
Query: 119 CGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGCAGGSLRNTLNYVQFAG 178
CG+C+AFS A++GQ+F+ T + LS Q +VDCS GN GC GG + YVQ G
Sbjct: 60 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 119
Query: 179 GLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEHALKVTLATVGPIAVSINASP 238
GL EE YPY+ + CK+ P V + V P+ E AL +ATVGPI+V+I+A
Sbjct: 120 GLDSEESYPYEATEESCKY-NPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGH 178
Query: 239 HTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS--------WILKNWWSHHWGDNGYMY 290
+F Y GIY + C+S+ ++H +L+VGY S W++KN W WG GY+
Sbjct: 179 ESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK 238
Query: 291 L-KRGNNRCGIANYAVYALI 309
+ K N CGIA+ A Y +
Sbjct: 239 MAKDRRNHCGIASAASYPTV 258
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 158/290 (54%), Gaps = 10/290 (3%)
Query: 27 DSKKKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRL-THSRIRRT 85
++ ++L W+ N K + HN E G+H Y L NHL D+ + M+ L S+ +R
Sbjct: 29 EAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRN 88
Query: 86 LVRSPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEEL 145
+ +SN + ++PD +DWREKG +T Q CGA +AFS A++ Q+ T ++ L
Sbjct: 89 ITY--KSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSL 146
Query: 146 SIQQVVDCSIIS-GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVV 204
S Q +VDCS GN GC GG + Y+ G+ + YPYK C++
Sbjct: 147 SAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAA 206
Query: 205 DISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAML 264
S ++ LP E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L
Sbjct: 207 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVL 265
Query: 265 LVGY----TRNSWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
+VGY + W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 266 VVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+C+AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 121
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+C+AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+C+AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 121
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 125/217 (57%), Gaps = 7/217 (3%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CGA YAFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ P V V P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY-NPKYSVANDVGFVDIPKQEK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY-----TRNSW 273
AL +ATVGPI+V+I+A +F Y GIY C+S +NHAML+VGY + W
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYW 180
Query: 274 ILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ P V + V P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY-NPKYSVANDTGFVDIPKQEK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS------ 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDN 180
Query: 273 --WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 148/299 (49%), Gaps = 25/299 (8%)
Query: 25 ATDSKKKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDL----HPRHYIKEMTR---- 76
A D ++ W+ N K I HN GL YTL N +D+ Y+ EM+R
Sbjct: 19 ADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDI 78
Query: 77 LTHSRIRRTLVRSPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIF 136
L+H P + +PD +DWRE G++T +Q +CG+ +AFS ++GQ
Sbjct: 79 LSHG--------VPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYM 130
Query: 137 KSTSEIEELSIQQVVDCSIISGNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSIC 195
K+ S QQ+VDCS GN GC GG + N Y+ QF GL E YPY + C
Sbjct: 131 KNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQF--GLETESSYPYTAVEGQC 188
Query: 196 KFKRPNIVVDISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACT 255
++ + V ++ + + E LK + GP AV+++ F +Y SGIY + C+
Sbjct: 189 RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESD-FMMYRSGIYQSQTCS 247
Query: 256 SDYVNHAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
VNHA+L VGY WI+KN W WG+ GY+ + R N CGIA+ A ++
Sbjct: 248 PLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 147/292 (50%), Gaps = 24/292 (8%)
Query: 30 KKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRT---- 85
+K +Q + HN++ +QGL YTL N +D+ P +EM TH I
Sbjct: 42 RKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP----EEMKAYTHGLIMPADLHK 97
Query: 86 ---LVRSPES---NESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQ--IFK 137
+++ E N SV P DWR++G ++P NQ CG+ +AFS AI+ Q I
Sbjct: 98 NGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIAN 157
Query: 138 STSEIEELSIQQVVDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKF 197
+S QQ+VDC + LGC+GG + + YV GG+ E YPY+ C +
Sbjct: 158 GAGYDSSVSEQQLVDC--VPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHY 215
Query: 198 KRPNIVVDISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSD 257
+ +S + L DE+ L +AT GP+AV+ +A F Y+ G+Y + C ++
Sbjct: 216 DPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCETN 274
Query: 258 YVNHAMLLVGY----TRNSWILKNWWSHHWGDNGYMYLKR-GNNRCGIANYA 304
HA+L+VGY ++ W++KN W WG +GY + R NN CGIA A
Sbjct: 275 KFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVA 326
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 149/288 (51%), Gaps = 11/288 (3%)
Query: 29 KKKLHWQSNHKKIHTHNQEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTL-V 87
+++L ++ N KI HN + ++G Y+ N D+ ++ + R + + +
Sbjct: 46 RRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKPKHPENL 105
Query: 88 RSPESNESVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSI 147
R P + + +DWR ++ +Q CG+ ++FS A++GQ+ + LS
Sbjct: 106 RMPYVSSKKPLAASVDWRSNA-VSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSE 164
Query: 148 QQVVDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDIS 207
Q ++DCS GN GC GG + + +Y+ G+M E YPY+ + C+F V +S
Sbjct: 165 QNLIDCSSSYGNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGDYCRFDSSQSVTTLS 223
Query: 208 SWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVG 267
+ LP DE++L + GP+AV+I+A+ Q Y+ G++ D+ C +NH +L+VG
Sbjct: 224 GYYDLPSGDENSLADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCNQSDLNHGVLVVG 282
Query: 268 YTRNS----WILKNWWSHHWGDNGYMYLKR--GNNRCGIANYAVYALI 309
Y ++ WILKN W WG++GY R GNN CGIA A Y +
Sbjct: 283 YGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGIATAASYPAL 329
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 7/219 (3%)
Query: 97 LIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSII 156
++PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 3 ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 62
Query: 157 S-GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQ 215
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 63 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYG 122
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRN 271
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKE 181
Query: 272 SWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 182 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 220
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 7/219 (3%)
Query: 97 LIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSII 156
++PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 60
Query: 157 S-GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQ 215
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYG 120
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRN 271
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKE 179
Query: 272 SWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
Query: 99 PDHLDWREKG-FITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
P +DWR+KG F++P NQ CG+C+ FS A++ + +T ++ L+ QQ+VDC+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
N GC GG Y+++ G+M E+ YPYKG+ CKF+ + + + + DE
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEAC--TSDYVNHAMLLVGYTRNS--- 272
A+ +A P++ + + + F +Y GIY +C T D VNHA+L VGY +
Sbjct: 122 EAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIP 180
Query: 273 -WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
WI+KN W WG NGY ++RG N CG+A A Y +
Sbjct: 181 YWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 217
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 7/219 (3%)
Query: 97 LIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSII 156
++PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 60
Query: 157 S-GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQ 215
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYG 120
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRN 271
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKE 179
Query: 272 SWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 12/221 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR +G +TP +Q DCG+C+AFS A++G T ++ LS Q+++DCS
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
GN C+GG + + YV +GG+ E+ YPY + C+ + VV I + +P + E
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSE 126
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY------TRN 271
A+K LA P++++I A FQ Y G++ D +C +D ++H +LLVGY ++
Sbjct: 127 AAMKAALAK-SPVSIAIEADQMPFQFYHEGVF-DASCGTD-LDHGVLLVGYGTDKESKKD 183
Query: 272 SWILKNWWSHHWGDNGYMYL---KRGNNRCGIANYAVYALI 309
WI+KN W WG +GYMY+ K +CG+ A + ++
Sbjct: 184 FWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 127/219 (57%), Gaps = 13/219 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWRE G + P NQ CG+C+AFS +A++G T ++ LS QQ+VDC+ +
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT--T 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
N GC GG + ++ GG+ EE YPY+G+ IC VV I S+ +P +E
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNE 120
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSW 273
+L+ +A P++V+++A+ FQLY SGI+ S NHA+ +VGY ++ W
Sbjct: 121 QSLQKAVANQ-PVSVTMDAAGRDFQLYRSGIFTGSCNIS--ANHALTVVGYGTENDKDFW 177
Query: 274 ILKNWWSHHWGDNGYMYLKRG----NNRCGIANYAVYAL 308
I+KN W +WG++GY+ +R + +CGI +A Y +
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGAC+AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+C+AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 122/219 (55%), Gaps = 7/219 (3%)
Query: 97 LIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSII 156
++PD +DWREKG +T Q CGA +AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 ILPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 60
Query: 157 S-GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQ 215
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYG 120
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRN 271
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKE 179
Query: 272 SWILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGA +AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 122
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 123 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 181
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 219
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGA +AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 7/218 (3%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD +DWREKG +T Q CGA +AFS A++ Q+ T ++ LS Q +VDCS
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 -GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQD 216
GN GC GG + Y+ G+ + YPYK C++ S ++ LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGR 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNS 272
E LK +A GP++V ++A +F LY SG+Y + +CT + VNH +L+VGY +
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQN-VNHGVLVVGYGDLNGKEY 179
Query: 273 WILKNWWSHHWGDNGYMYLKRG-NNRCGIANYAVYALI 309
W++KN W H++G+ GY+ + R N CGIA++ Y I
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 106/174 (60%), Gaps = 1/174 (0%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG++TP NQ CG+ +AFS A++GQ+F+ T + LS Q +VDCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
N GC GG + YVQ GGL EE YPY+ + CK+ V + + + +P Q E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EK 120
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS 272
AL +ATVGPI+V+I+A +F Y GIY + C+S+ ++H +L+VGY S
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+ +DWR+KG +TP NQ CG+C+AFS S ++ T + LS QQ+VDC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCN--K 58
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
N GC GG+ Y+ GG+ E +YPYK Q C+ + VV I + +P +E
Sbjct: 59 KNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK--VVRIDGYKGVPHCNE 116
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILKN 277
+ALK +A+ P V+I+AS FQ Y SGI+ T +NH +++VGY ++ WI++N
Sbjct: 117 NALKKAVASQ-PSVVAIDASSKQFQHYKSGIFSGPCGTK--LNHGVVIVGYWKDYWIVRN 173
Query: 278 WWSHHWGDNGYMYLKR--GNNRCGIANYAVY 306
W +WG+ GY+ +KR G CGIA Y
Sbjct: 174 SWGRYWGEQGYIRMKRVGGCGLCGIARLPYY 204
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+H+DWR KG + P NQ CG+C+AFS + ++ T + LS QQ+VDCS
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS--K 58
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
N GC GG Y+ GG+ E +YPYK Q C+ + VV I +P +E
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK--VVRIDGCKGVPQCNE 116
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILKN 277
+ALK +A+ P V+I+AS FQ Y GI+ T +NH +++VGY ++ WI++N
Sbjct: 117 NALKNAVASQ-PSVVAIDASSKQFQHYKGGIFTGPCGTK--LNHGVVIVGYGKDYWIVRN 173
Query: 278 WWSHHWGDNGYMYLKR--GNNRCGIANYAVY 306
W HWG+ GY +KR G CGIA Y
Sbjct: 174 SWGRHWGEQGYTRMKRVGGCGLCGIARLPFY 204
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 17/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWREKG +TP +Q CG+C+AFS I+GQ + + + LS Q +V C I
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI-- 59
Query: 159 NLGCAGGSLRNTLNYV--QFAGGLMKEEDYPY---KGKQSICKFKRPNIVVDISSWSVLP 213
+ GC GG + N N++ G + E YPY G+Q C+ I I+ V
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITD-HVDL 118
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS- 272
PQDE A+ LA GP+A++++A+ +F Y GI +CTS+ ++H +LLVGY S
Sbjct: 119 PQDEDAIAAYLAENGPLAIAVDAT--SFMDYNGGIL--TSCTSEQLDHGVLLVGYNDASN 174
Query: 273 ---WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI+KN WS+ WG++GY+ +++G N+C + N AV + +
Sbjct: 175 PPYWIIKNSWSNMWGEDGYIRIEKGTNQC-LMNQAVSSAV 213
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 118/211 (55%), Gaps = 9/211 (4%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+ +DWR+KG +TP NQ CG+C+AFS S ++ T + LS Q++VDC
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--K 58
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
N GC GG+ Y+ GG+ + +YPYK Q C + + VV I ++ +P +E
Sbjct: 59 KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC--QAASKVVSIDGYNGVPFCNE 116
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILKN 277
ALK +A V P V+I+AS FQ Y+SGI+ T +NH + +VGY N WI++N
Sbjct: 117 XALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCGTK--LNHGVTIVGYQANYWIVRN 173
Query: 278 WWSHHWGDNGYMYLKR--GNNRCGIANYAVY 306
W +WG+ GY+ + R G CGIA Y
Sbjct: 174 SWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD++DWR G + +Q CG+C+AFS +A++G +T ++ LS Q++VDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFK-RPNIVVDISSWSVLPPQD 216
GC GG + + ++ GG+ E +YPY ++ C + V I ++ +P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS---- 272
E AL+ +A P++V++ A+ + FQ Y+SGI+ T+ V+HA+ +VGY
Sbjct: 121 EWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTA--VDHAVTIVGYGTEGGIDY 177
Query: 273 WILKNWWSHHWGDNGYMYLKR---GNNRCGIANYAVYAL 308
WI+KN W WG+ GYM ++R G +CGIA A Y +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 14/217 (6%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR KG + NQ+ CG+C+AFS +A++ T ++ LS Q++VDC S
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDE 217
GC GG + N Y+ GG+ +++YPY Q CK R VV I+ + + +E
Sbjct: 61 --HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR-VVSINGFQRVTRNNE 117
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSW 273
AL+ +A+ P++V++ A+ FQ Y+SGI+ T+ NH +++VGY +N W
Sbjct: 118 SALQSAVASQ-PVSVTVEAAGAPFQHYSSGIFTGPCGTAQ--NHGVVIVGYGTQSGKNYW 174
Query: 274 ILKNWWSHHWGDNGYMYLKR----GNNRCGIANYAVY 306
I++N W +WG+ GY++++R CGIA Y
Sbjct: 175 IVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSY 211
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 11/215 (5%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P+ +DWREKG +TP NQ CG+C+AFS + I+G T ++ LS Q+++DC S
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRS- 60
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFK-RPNIVVDISSWSVLPPQDE 217
GC GG +L YV G+ E +YPY+ KQ C+ K + V I+ + +P DE
Sbjct: 61 -HGCDGGYQTTSLQYV-VDNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDE 118
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILKN 277
+L +A P++V ++ FQ Y GIY+ T+ +HA+ VGY + +LKN
Sbjct: 119 ISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGPCGTN--TDHAVTAVGYGKTYLLLKN 175
Query: 278 WWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
W +WG+ GY+ +KR + R CG+ + + +
Sbjct: 176 SWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+PD++DWR G + +Q CG+ +AFS +A++G +T ++ LS Q++VDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFK-RPNIVVDISSWSVLPPQD 216
GC GG + + ++ GG+ E +YPY ++ C + V I ++ +P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS---- 272
E AL+ +A P++V++ A+ + FQ Y+SGI+ T+ V+HA+ +VGY
Sbjct: 121 EWALQTAVAYQ-PVSVALEAAGYNFQHYSSGIFTGPCGTA--VDHAVTIVGYGTEGGIDY 177
Query: 273 WILKNWWSHHWGDNGYMYLKR---GNNRCGIANYAVYAL 308
WI+KN W WG+ GYM ++R G +CGIA A Y +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR+KG +T +Q CG+C+AFS A++G T+++ LS Q++VDC
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNI-VVDISSWSVLPPQD 216
N GC GG + +++ GG+ E +YPY+ C + N V I +P D
Sbjct: 62 -NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPEND 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRN----- 271
E+AL +A P++V+I+A FQ Y+ G++ T ++H + +VGY
Sbjct: 121 ENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTGSCGTE--LDHGVAIVGYGTTIDGTK 177
Query: 272 SWILKNWWSHHWGDNGYMYLKRG----NNRCGIANYAVYAL 308
W +KN W WG+ GY+ ++RG CGIA A Y +
Sbjct: 178 YWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 11/217 (5%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P DWR KG +T +Q CG+C+AFS+ ++GQ F + + LS Q+++DC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-- 59
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
+ C GG N + ++ GGL E+DY Y+G C+F V I SV Q+E
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQD-SVELSQNEQ 118
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYASGIYDD--EACTSDYVNHAMLLVGYTRNS---- 272
L LA GPI+V+INA Q Y GI C+ ++HA+LLVGY + S
Sbjct: 119 KLAAWLAKRGPISVAINA--FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPF 176
Query: 273 WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
W +KN W WG+ GY YL RG+ CG+ A A++
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 17/224 (7%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P +DWR+KG +T +Q CG+C+AFS +++G T + LS Q+++DC
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPN----IVVDISSWSVLP 213
N GC GG + N Y++ GGL+ E YPY+ + C R +VV I +P
Sbjct: 64 -NDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVP 122
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----- 268
E L +A P++V++ AS F Y+ G++ E T ++H + +VGY
Sbjct: 123 ANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGECGTE--LDHGVAVVGYGVAED 179
Query: 269 TRNSWILKNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
+ W +KN W WG+ GY+ +++ + CGIA A Y +
Sbjct: 180 GKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 11/219 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P ++DWR G + +Q +CG C+AFS + ++G T + LS Q+++DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQD 216
GC GG + + ++ GG+ EE+YPY + C N V I ++ +P +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS---- 272
E AL+ T T P++V+++A+ F+ Y+SGI+ T+ ++HA+ +VGY
Sbjct: 121 EWALQ-TAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTA--IDHAVTIVGYGTEGGIDY 177
Query: 273 WILKNWWSHHWGDNGYMYLKR---GNNRCGIANYAVYAL 308
WI+KN W WG+ GYM + R G CGIA Y +
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR KG +TP NQ CG+ +AFS + ++G T + ELS Q++VDC S
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHS- 60
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFK-RPNIVVDISSWSVLPPQDE 217
GC GG +L YV G+ + YPY+ KQ C+ +P V I+ + +P E
Sbjct: 61 -YGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 218 HALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY----TRNSW 273
+ LA P++V + A FQLY SG++D T ++HA+ VGY +N
Sbjct: 119 TSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFDGPCGTK--LDHAVTAVGYGTSDGKNYI 175
Query: 274 ILKNWWSHHWGDNGYMYLKR--GNNR--CGIANYAVYAL 308
I+KN W +WG+ GYM LKR GN++ CG+ + Y
Sbjct: 176 IIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 11/219 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P ++DWR G + +Q +CG +AFS + ++G ++ + LS Q+++DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFK-RPNIVVDISSWSVLPPQD 216
GC GG + + ++ GG+ EE+YPY + C + V I ++ +P +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS---- 272
E AL+ T T P++V+++A+ F+ YASGI+ T+ V+HA+++VGY
Sbjct: 121 EWALQ-TAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTA--VDHAIVIVGYGTEGGVDY 177
Query: 273 WILKNWWSHHWGDNGYMYLKR---GNNRCGIANYAVYAL 308
WI+KN W WG+ GYM + R G CGIA Y +
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 13/217 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP+++DWR+KG +TP NQ CG+C+AFS I+G I T + E S Q+++DC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 158 GNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQ 215
GC GG + L V Q+ G+ YPY+G Q C+ + + P
Sbjct: 61 --YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 116
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWIL 275
+E AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++
Sbjct: 117 NEGALLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILI 173
Query: 276 KNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
KN W WG+NGY+ +KRG CG+ + Y +
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR+KG +T +Q CG C+AF AI+G +T + +S QQ+VDC
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVLPPQDEH 218
GG + +V GG+ + +YPY G C +P I I ++ +P
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP-IAARIDGYTNVPNSSSA 118
Query: 219 ALKVTLATVGPIAVSINASPHTFQLYAS-GIYDDEACTSD--YVNHAMLLVGYTRNS--- 272
L P++V+I S +FQLY GI+ +C+ D V+H +L+VGY N
Sbjct: 119 LLDAVAKQ--PVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176
Query: 273 --WILKNWWSHHWGDNGYMYLKRGNNR----CGIANYAVY 306
WI+KN W WG +GY+ ++R NR C I + Y
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSY 216
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 16/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR +G +T +Q CG+C+AFS ++ Q F + + LS Q +V C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 159 NLGCAGGSLRNTLNYV--QFAGGLMKEEDYPYKGKQSI---CKFKRPNIVVDISSWSVLP 213
+ GC+GG + N ++ + G + E+ YPY + I C + I+ V
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVEL 118
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS- 272
PQDE + LA GP+AV+++AS ++ Y G+ +C S+ ++H +LLVGY ++
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVSEQLDHGVLLVGYNDSAA 174
Query: 273 ---WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI+KN W+ WG+ GY+ + +G+N+C + A A++
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 16/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR +G +T +Q CG+C+AFS ++ Q F + + LS Q +V C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 159 NLGCAGGSLRNTLNYV--QFAGGLMKEEDYPYKGKQSI---CKFKRPNIVVDISSWSVLP 213
+ GC+GG + N ++ + G + E+ YPY + I C + I+ V
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVEL 118
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS- 272
PQDE + LA GP+AV+++AS ++ Y G+ +C S+ ++H +LLVGY ++
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVSEALDHGVLLVGYNDSAA 174
Query: 273 ---WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI+KN W+ WG+ GY+ + +G+N+C + A A++
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 16/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR +G +T +Q CG+C+AFS ++ Q F + + L+ Q +V C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 159 NLGCAGGSLRNTLNYV--QFAGGLMKEEDYPYKGKQSI---CKFKRPNIVVDISSWSVLP 213
+ GC+GG + N ++ + G + E+ YPY + I C + I+ V
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVEL 118
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS- 272
PQDE + LA GP+AV+++AS ++ Y G+ +C S+ ++H +LLVGY +
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVSEQLDHGVLLVGYNDGAA 174
Query: 273 ---WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI+KN W+ WG+ GY+ + +G+N+C + A A++
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 16/220 (7%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +DWR +G +T +Q CG+C+AFS ++ Q F + + L+ Q +V C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 159 NLGCAGGSLRNTLNYV--QFAGGLMKEEDYPYKGKQSI---CKFKRPNIVVDISSWSVLP 213
+ GC+GG + N ++ + G + E+ YPY + I C + I+ V
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVEL 118
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS- 272
PQDE + LA GP+AV+++AS ++ Y G+ +C S+ ++H +LLVGY +
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVSEQLDHGVLLVGYNDGAA 174
Query: 273 ---WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI+KN W+ WG+ GY+ + +G+N+C + A A++
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 13/217 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP+++DWR+KG +TP NQ CG+C+AFS I+G I T + + S Q+++DC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 158 GNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQ 215
GC GG + L V Q+ G+ YPY+G Q C+ + + P
Sbjct: 61 --YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 116
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWIL 275
++ AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++
Sbjct: 117 NQGALLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILI 173
Query: 276 KNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
KN W WG+NGY+ +KRG CG+ + Y +
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 13/219 (5%)
Query: 96 VLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSI 155
V IP+++DWR+KG +TP NQ CG+ +AFS S I+ I T + E S Q+++DC
Sbjct: 150 VNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR 209
Query: 156 ISGNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLP 213
S GC GG + L V Q+ G+ YPY+G Q C+ + +
Sbjct: 210 RS--YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQ 265
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSW 273
P +E AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N
Sbjct: 266 PYNEGALLYSIANQ-PVSVVLEAAGKDFQLYRGGIF--VGPCGNKVDHAVAAVGYGPNYI 322
Query: 274 ILKNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
+++N W WG+NGY+ +KRG CG+ + Y +
Sbjct: 323 LIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 361
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP+++DWR+KG +TP NQ CG+ +AFS I+G I T + E S Q+++DC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 158 GNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQ 215
GC GG + L V Q+ G+ YPY+G Q C+ + + P
Sbjct: 61 --YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 116
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWIL 275
+E AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++
Sbjct: 117 NEGALLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILI 173
Query: 276 KNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
KN W WG+NGY+ +KRG CG+ + Y +
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 113/216 (52%), Gaps = 13/216 (6%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P+++DWR+KG +TP NQ CG+C+AFS I+G I T + + S Q+++DC S
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS- 60
Query: 159 NLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQD 216
GC GG + L V Q+ G+ YPY+G Q C+ + + P +
Sbjct: 61 -YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILK 276
+ AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++K
Sbjct: 118 QGALLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILIK 174
Query: 277 NWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
N W WG+NGY+ +KRG CG+ + Y +
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP+++DWR+KG +TP NQ CG+ +AFS I+G I T + + S Q+++DC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 158 GNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQ 215
GC GG + L V Q+ G+ YPY+G Q C+ + + P
Sbjct: 61 --YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 116
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWIL 275
+E AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++
Sbjct: 117 NEGALLYSIANQ-PVSVVLEAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILI 173
Query: 276 KNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
KN W WG+NGY+ +KRG CG+ + Y +
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP+++DWR+KG +TP NQ CG+ +AFS I+G I T + + S Q+++DC S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 158 GNLGCAGGSLRNTLNYV-QFAGGLMKEEDYPYKGKQSICKFKRPN-IVVDISSWSVLPPQ 215
GC GG + L V Q+ G+ YPY+G Q C+ + + P
Sbjct: 61 --YGCNGGYPWSALQLVAQY--GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 116
Query: 216 DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWIL 275
++ AL ++A P++V + A+ FQLY GI+ + V+HA+ VGY N ++
Sbjct: 117 NQGALLYSIANQ-PVSVVLQAAGKDFQLYRGGIFVGPC--GNKVDHAVAAVGYGPNYILI 173
Query: 276 KNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
KN W WG+NGY+ +KRG CG+ + Y +
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 15/218 (6%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+++DWR+KG +TP +Q CG+C+AFS + ++G T ++ ELS Q++VDC S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKR-PNIVVDISSWSVLPPQD 216
GC GG L YV G+ YPYK KQ C+ K+ +V S + P +
Sbjct: 61 --HGCKGGYPPYALEYVA-KNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSW--- 273
E L +A P++V + + FQLY GI++ T V+HA+ VGY ++
Sbjct: 118 EGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCGTK--VDHAVTAVGYGKSGGKGY 174
Query: 274 -ILKNWWSHHWGDNGYMYLKR--GNNR--CGIANYAVY 306
++KN W WG+ GY+ +KR GN+ CG+ + Y
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 212
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 15/218 (6%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+++DWR+KG +TP +Q CG+C+AFS + ++G T ++ ELS Q++VDC S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKR-PNIVVDISSWSVLPPQD 216
GC GG L YV G+ YPYK KQ C+ K+ +V S + P +
Sbjct: 61 --HGCKGGYPPYALEYVA-KNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 217 EHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSW--- 273
E L +A P++V + + FQLY GI++ T V HA+ VGY ++
Sbjct: 118 EGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGPCGTK--VEHAVTAVGYGKSGGKGY 174
Query: 274 -ILKNWWSHHWGDNGYMYLKR--GNNR--CGIANYAVY 306
++KN W WG+ GY+ +KR GN+ CG+ + Y
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 212
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 107/226 (47%), Gaps = 27/226 (11%)
Query: 103 DWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGC 162
DWR G +TP +Q CG+C+AFS +++ Q + S Q++VDCS+ N GC
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSV--KNNGC 82
Query: 163 AGGSLRNTLNYVQFAGGLMKEEDYPYKGK-QSICKFKRPNIVVDISSWSVLPPQDEHALK 221
GG + N + + GGL ++DYPY C KR N I S+ +P + K
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIP---DDKFK 139
Query: 222 VTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS--------- 272
L +GPI++SI AS F Y G YD E + NHA++LVGY
Sbjct: 140 EALRYLGPISISIAAS-DDFAFYRGGFYDGECGAA--PNHAVILVGYGMKDIYNEDTGRM 196
Query: 273 -----WILKNWWSHHWGDNGYMYLKRGNN----RCGIANYAVYALI 309
+I+KN W WG+ GY+ L+ N C I A L+
Sbjct: 197 EKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 15/216 (6%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
IP +DWR+KG +TP NQ CG+C+ FS +A++G T ++ LS Q+++DC S
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICK---FKRPNIVVDISSWSVLPP 214
GC GG L YV + G+ + YPY+G Q C+ K P + D +P
Sbjct: 61 --YGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQAKGPKVKTD--GVGRVPR 115
Query: 215 QDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWI 274
+E AL +A + P+++ + A FQ Y GI+ TS ++HA+ VGY + +
Sbjct: 116 NNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGPCGTS--IDHAVAAVGYGNDYIL 172
Query: 275 LKNWWSHHWGDNGYMYLKRGNNR----CGIANYAVY 306
+KN W WG+ GY+ +KRG+ CG+ + +V+
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVF 208
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 16/270 (5%)
Query: 47 EAQQGLHGYTLRENHLSDLHPRHY-IKEMTRLTHSRIRRTLVRSPESNESVLIPDHLDWR 105
E + + Y L N +DL + K + L + I ++ + + V +P+++DWR
Sbjct: 55 ETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWR 114
Query: 106 EKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGCAGG 165
+KG +TP +Q CG+C+AFS + ++G T ++ ELS Q++VDC S GC GG
Sbjct: 115 KKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS--HGCKGG 172
Query: 166 SLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKR-PNIVVDISSWSVLPPQDEHALKVTL 224
L YV G+ YPYK KQ C+ K+ +V S + P +E L +
Sbjct: 173 YPPYALEYVA-KNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAI 231
Query: 225 ATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSW----ILKNWWS 280
A P++V + + FQLY GI++ T V+ A+ VGY ++ ++KN W
Sbjct: 232 AKQ-PVSVVVESKGRPFQLYKGGIFEGPCGTK--VDGAVTAVGYGKSGGKGYILIKNSWG 288
Query: 281 HHWGDNGYMYLKR--GNNR--CGIANYAVY 306
WG+ GY+ +KR GN+ CG+ + Y
Sbjct: 289 TAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 318
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P+ DW +KG IT Q CG+ +AFS AI+ +T + LS Q+++DC +
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC--VDE 60
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSV------L 212
+ GC G + +V GG+ E DYPYK + CK V I ++ V
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120
Query: 213 PPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDY-VNHAMLLVGYTRN 271
+ + + PI+VSI+A F Y+ GIYD C+S Y +NH +L+VGY
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDAK--DFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 272 S----WILKNWWSHHWGDNGYMYLKR--GN--NRCGIANYAVYALI 309
WI KN W WG +GY+ ++R GN CG+ +A Y +I
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 103 DWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGC 162
DWR +TP +Q++CG+C+AFS +++ Q +++ LS Q++VDCS N GC
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KNYGC 80
Query: 163 AGGSLRNTLNYVQFAGGLMKEEDYPY-KGKQSICKFKRPNIVVDISSWSVLPPQDEHALK 221
GG + N + GG+ + DYPY ++C R I ++ +P ++ LK
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVP---DNKLK 137
Query: 222 VTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS--------- 272
L +GPI++S+ S F Y GI+D E D +NHA++LVG+
Sbjct: 138 EALRFLGPISISVAVS-DDFAFYKEGIFDGEC--GDQLNHAVMLVGFGMKEIVNPLTKKG 194
Query: 273 -----WILKNWWSHHWGDNGYMYLKRGNN----RCGIANYAVYALI 309
+I+KN W WG+ G++ ++ + +CG+ A LI
Sbjct: 195 EKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 108/232 (46%), Gaps = 23/232 (9%)
Query: 96 VLIPDHLDWREK---GFITPDWNQEDCGACYAFSIASAIQGQI--FKSTSEIEELSIQQV 150
+ +P DWR F++P NQ CG+CY+F+ ++ +I + S+ LS Q+V
Sbjct: 205 LFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEV 264
Query: 151 VDCSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSW- 209
V CS + GC GG GL++E +PY G S CK K S +
Sbjct: 265 VSCSQYA--QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYH 322
Query: 210 ---SVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIY-----DDEACTSDYVNH 261
+E +K+ L GP+AV+ F Y GIY D + NH
Sbjct: 323 YVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIYHHTGLRDPFNPFELTNH 381
Query: 262 AMLLVGYTRNS------WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYA 307
A+LLVGY +S WI+KN W WG+NGY ++RG + C I + AV A
Sbjct: 382 AVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 433
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 103 DWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGC 162
DWR +TP +Q++CG+ +AFS +++ Q +++ LS Q++VDCS N GC
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KNYGC 79
Query: 163 AGGSLRNTLNYVQFAGGLMKEEDYPY-KGKQSICKFKRPNIVVDISSWSVLPPQDEHALK 221
GG + N + GG+ + DYPY ++C R I ++ +P ++ LK
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVP---DNKLK 136
Query: 222 VTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS--------- 272
L +GPI++S+ S F Y GI+D E D +NHA++LVG+
Sbjct: 137 EALRFLGPISISVAVS-DDFAFYKEGIFDGEC--GDQLNHAVMLVGFGMKEIVNPLTKKG 193
Query: 273 -----WILKNWWSHHWGDNGYMYLKRGNN----RCGIANYAVYALI 309
+I+KN W WG+ G++ ++ + +CG+ A LI
Sbjct: 194 EKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 239
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 25/232 (10%)
Query: 98 IPDHLDWREK---GFITPDWNQEDCGACYAFSIASAIQGQI--FKSTSEIEELSIQQVVD 152
+P+ DWR F++P NQE CG+CY+F+ ++ +I + S+ LS Q+VV
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 153 CSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSWSVL 212
CS + GC GG G+++E +PY + CK K N + SS
Sbjct: 266 CSPYAQ--GCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKE-NCLRYYSSEYYY 322
Query: 213 PPQ-----DEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDY-----VNHA 262
+E +K+ L GP+AV+ F Y SGIY + + NHA
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVH-DDFLHYHSGIYHHTGLSDPFNPFELTNHA 381
Query: 263 MLLVGYTRNS------WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
+LLVGY ++ WI+KN W WG++GY ++RG + C I + A+ A+
Sbjct: 382 VLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAI 433
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 21/223 (9%)
Query: 98 IPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIIS 157
+P+ +DWR KG +TP +Q C +C+AFS + ++G T + ELS Q++VDC + S
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 158 GNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIV----VDISSWSVLP 213
GC G +L YV G+ YPY KQ C R N V V + +
Sbjct: 61 --YGCNRGYQSTSLQYVA-QNGIHLRAKYPYIAKQQTC---RANQVGGPKVKTNGVGRVQ 114
Query: 214 PQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSW 273
+E +L +A P++V + ++ FQ Y GI++ T V+HA+ VGY ++
Sbjct: 115 SNNEGSLLNAIAHQ-PVSVVVESAGRDFQNYKGGIFEGSCGTK--VDHAVTAVGYGKSGG 171
Query: 274 ----ILKNWWSHHWGDNGYMYLKRGNNR----CGIANYAVYAL 308
++KN W WG+NGY+ ++R + CG+ + Y +
Sbjct: 172 KGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 17/224 (7%)
Query: 95 SVLIPDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCS 154
SV +P LD R +TP Q CG+C+AFS +A + + +LS Q++VDC
Sbjct: 8 SVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC- 66
Query: 155 IISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIV-VDISSWSVLP 213
+ GC G ++ + Y+Q G+++E YPY ++ C +RPN IS++ +
Sbjct: 67 --ASQHGCHGDTIPRGIEYIQ-QNGVVEERSYPYVAREQRC--RRPNSQHYGISNYCQIY 121
Query: 214 PQDEHALKVTLA-TVGPIAVSINASP-HTFQLY--ASGIYDDEACTSDYVNHAMLLVGYT 269
P D ++ L T IAV I FQ Y + I D +Y HA+ +VGY
Sbjct: 122 PPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY--HAVNIVGYG 179
Query: 270 RNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYALI 309
WI++N W WGD+GY Y + GNN I Y ++
Sbjct: 180 STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQYPYVVIM 223
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 60 NHLSDLHPRHYIKE--MTRLTHSRIRRTLVRSPESNESVL---IPDHLDWREKGFITPDW 114
NHLSDL + M+ ++ + E+N + P +D R+ +TP
Sbjct: 47 NHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIR 106
Query: 115 NQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISGNLGCAGGSLRNTLNYV 174
Q CG+ +AFS +A + + +L+ Q++VDC + GC G ++ + Y+
Sbjct: 107 MQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDC---ASQHGCHGDTIPRGIEYI 163
Query: 175 QFAGGLMKEEDYPYKGKQSICKFKRPNIV-VDISSWSVLPPQDEHALKVTLA-TVGPIAV 232
Q G+++E Y Y ++ C +RPN IS++ + P + + ++ LA T IAV
Sbjct: 164 QH-NGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAV 220
Query: 233 SINASP-HTFQLYASG--IYDDEACTSDYVNHAMLLVGYTR----NSWILKNWWSHHWGD 285
I F+ Y I D +Y HA+ +VGY+ + WI++N W +WGD
Sbjct: 221 IIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGD 278
Query: 286 NGYMYL 291
NGY Y
Sbjct: 279 NGYGYF 284
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +D R+ +TP Q CG+C+AFS +A + + +L+ Q++VDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC---AS 67
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIV-VDISSWSVLPPQDE 217
GC G ++ + Y+Q G+++E Y Y ++ C +RPN IS++ + P +
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 218 HALKVTLA-TVGPIAVSINASP-HTFQLY--ASGIYDDEACTSDYVNHAMLLVGYTR--- 270
+ ++ LA T IAV I F+ Y + I D +Y HA+ +VGY+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQG 182
Query: 271 -NSWILKNWWSHHWGDNGYMYL 291
+ WI++N W +WGDNGY Y
Sbjct: 183 VDYWIVRNSWDTNWGDNGYGYF 204
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 17/202 (8%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +D R+ +TP Q CG+C+AFS +A + ++ +L+ Q++VDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC---AS 67
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIV-VDISSWSVLPPQDE 217
GC G ++ + Y+Q G+++E Y Y ++ C +RPN IS++ + P +
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNV 124
Query: 218 HALKVTLA-TVGPIAVSINASP-HTFQLY--ASGIYDDEACTSDYVNHAMLLVGYTR--- 270
+ ++ LA T IAV I F+ Y + I D +Y HA+ +VGY+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQG 182
Query: 271 -NSWILKNWWSHHWGDNGYMYL 291
+ WI++N W +WGDNGY Y
Sbjct: 183 VDYWIVRNSWDTNWGDNGYGYF 204
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 99 PDHLDWREKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQQVVDCSIISG 158
P +D R+ +TP Q CG+ +AFS +A + + +L+ Q++VDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC---AS 67
Query: 159 NLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIV-VDISSWSVLPPQDE 217
GC G ++ + Y+Q G+++E Y Y ++ C +RPN IS++ + P +
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 218 HALKVTLA-TVGPIAVSINASP-HTFQLY--ASGIYDDEACTSDYVNHAMLLVGYTR--- 270
+ ++ LA T IAV I F+ Y + I D +Y HA+ +VGY+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQG 182
Query: 271 -NSWILKNWWSHHWGDNGYMYL 291
+ WI++N W +WGDNGY Y
Sbjct: 183 VDYWIVRNSWDTNWGDNGYGYF 204
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 121/288 (42%), Gaps = 53/288 (18%)
Query: 46 QEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTLVRSPESNESVLIPDHLDWR 105
+EA++ L+G + N+ S L R R T R L S +S E+ W
Sbjct: 39 REAKR-LNGVIKKNNNASILPKR-------RFTEEEARAPLPSSFDSAEA--------WP 82
Query: 106 EKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQ--QVVDCSIISGNLGCA 163
I +Q CG+C+A + ASA+ + F + ++++ I ++ C G+ GC
Sbjct: 83 NCPTIPQIADQSACGSCWAVAAASAMSDR-FCTMGGVQDVHISAGDLLACCSDCGD-GCN 140
Query: 164 GGSLRNTLNYVQFAGGLMKE--EDYPY---------KGKQSICK---FKRPNI------- 202
GG Y + GL+ + + YP+ K C F P
Sbjct: 141 GGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDP 199
Query: 203 ---VVDISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYV 259
VV+ SW+ Q E L GP V+ + F Y SG+Y + Y+
Sbjct: 200 TIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVY--HHVSGQYL 256
Query: 260 N-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIAN 302
HA+ LVG+ ++ W + N W+ WG +GY ++RG++ CGI +
Sbjct: 257 GGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 304
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 121/288 (42%), Gaps = 53/288 (18%)
Query: 46 QEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTLVRSPESNESVLIPDHLDWR 105
+EA++ L+G + N+ S L R R T R L S +S E+ W
Sbjct: 40 REAKR-LNGVIKKNNNASILPKR-------RFTEEEARAPLPSSFDSAEA--------WP 83
Query: 106 EKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQ--QVVDCSIISGNLGCA 163
I +Q CG+C+A + ASA+ + F + ++++ I ++ C G+ GC
Sbjct: 84 NCPTIPQIADQSACGSCWAVAAASAMSDR-FCTMGGVQDVHISAGDLLACCSDCGD-GCN 141
Query: 164 GGSLRNTLNYVQFAGGLMKE--EDYPY---------KGKQSICK---FKRPNI------- 202
GG Y + GL+ + + YP+ K C F P
Sbjct: 142 GGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDP 200
Query: 203 ---VVDISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYV 259
VV+ SW+ Q E L GP V+ + F Y SG+Y + Y+
Sbjct: 201 TIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVY--HHVSGQYL 257
Query: 260 N-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIAN 302
HA+ LVG+ ++ W + N W+ WG +GY ++RG++ CGI +
Sbjct: 258 GGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 305
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 98 IPDHLDWREK---GFITPDWNQEDCGACYAFSIASAIQG--QIFKSTSEIEELSIQQVVD 152
+P DWR F++P NQ CG+CY+F+ ++ +I + S+ LS Q+VV
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 153 CSIISGNLGCAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSICKFKRPNIVVDISSW--- 209
CS + GC GG GL++E +PY G S CK K S +
Sbjct: 61 CSQYA--QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYV 118
Query: 210 -SVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIY 249
+E +K+ L GP+AV+ F Y GIY
Sbjct: 119 GGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIY 158
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 119/288 (41%), Gaps = 53/288 (18%)
Query: 46 QEAQQGLHGYTLRENHLSDLHPRHYIKEMTRLTHSRIRRTLVRSPESNESVLIPDHLDWR 105
+EA++ L+G + N+ S L R R T R L S +S E+ W
Sbjct: 62 REAKR-LNGVIKKNNNASILPKR-------RFTEEEARAPLPSSFDSAEA--------WP 105
Query: 106 EKGFITPDWNQEDCGACYAFSIASAIQGQIFKSTSEIEELSIQ--QVVDCSIISGNLGCA 163
I +Q CG+C+A + ASA+ + F + ++++ I ++ C G+ GC
Sbjct: 106 NCPTIPQIADQSACGSCWAVAAASAMSDR-FCTMGGVQDVHISAGDLLACCSDCGD-GCN 163
Query: 164 GGSLRNTLNYVQFAGGLMKEEDYPY-----------KGKQSICK---FKRPNI------- 202
GG Y + GL+ + PY K C F P
Sbjct: 164 GGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDP 222
Query: 203 ---VVDISSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYV 259
VV+ SW+ Q E L GP V+ + F Y SG+Y + Y+
Sbjct: 223 TIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVY--HHVSGQYL 279
Query: 260 N-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIAN 302
HA+ LVG+ ++ W + N W+ WG +GY ++RG++ CGI +
Sbjct: 280 GGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 327
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 96 VLIPDHLDWREK----GFITPDWNQEDCGACYAFSIASAIQGQ--IFKSTSEIEELSIQQ 149
V IP D R+K I +Q CG+C+AF A+ + I + ELS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 150 VVDCSIISGNLGCAGGSLRNTLNYVQFAG---GLMKE-----EDYPY-------KGKQSI 194
++ C G LGC GG L +Y G G KE E YP+ KGK
Sbjct: 61 LLSCCESCG-LGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 195 C----------------KFKRP---NIVVDISSWSVLPPQDEHALKVTLATVGPIAVSIN 235
C K+K P + SS++V DE A++ + GP+
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNV--KNDEKAIQKEIMKYGPVEAGFT 177
Query: 236 ASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS----WILKNWWSHHWGDNGYMYL 291
F Y SGIY HA+ ++G+ + W++ N W+ WG+NGY +
Sbjct: 178 VY-EDFLNYKSGIYK-HITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 292 KRGNNRCGIANYAVYALI 309
RG + C I + I
Sbjct: 236 VRGRDECSIESEVTAGRI 253
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 83 RRTLVRSPESNESVLIPDHLDWREK---GFITPDWNQ---EDCGACYAFSIASAIQGQI- 135
R T R E +P DWR + + NQ + CG+C+A + SA+ +I
Sbjct: 21 RTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRIN 80
Query: 136 --FKSTSEIEELSIQQVVDCSIISGNLG-CAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQ 192
K LS+Q V+DC GN G C GG+ + +Y G+ E Y+ K
Sbjct: 81 IKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYAH-QHGIPDETCNNYQAKD 135
Query: 193 SIC----------KFKRPNIVVDISSWSVLPPQDEHALKVTLATV---GPIAVSINASPH 239
C +FK + + + + W V + +A + GPI+ I A+
Sbjct: 136 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT-E 194
Query: 240 TFQLYASGIYDDEACTSDYVNHAMLLVGYTRNS----WILKNWWSHHWGDNGYMYL 291
Y GIY + T+ Y+NH + + G+ + WI++N W WG+ G++ +
Sbjct: 195 RLANYTGGIYAEYQDTT-YINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 257 DYVNHAMLLVGYTRNS------WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYA 307
+ NHA+LLVGY +S WI+KN W WG+NGY ++RG + C I + AV A
Sbjct: 7 ELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 47/259 (18%)
Query: 93 NESVLIPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSEIE--ELS 146
+E + +P+ D RE+ P +Q CG+C+AF A+ +I T+ E+S
Sbjct: 2 SEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVS 61
Query: 147 IQQVVDCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPY---------KGK 191
+ ++ C I GC GG N+ +GG+ PY G
Sbjct: 62 AEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGA 121
Query: 192 QSICKFK----RPNIVVDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSI 234
+ C + + N + + + +S +D+H + K +A + GP+ +
Sbjct: 122 RPPCTGEGDTPKCNKMCE-AGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF 180
Query: 235 NASPHTFQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYM 289
F Y SG+Y EA D + HA+ ++G+ + W++ N W+ WGDNG+
Sbjct: 181 TVF-SDFLTYKSGVYKHEA--GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFF 237
Query: 290 YLKRGNNRCGIANYAVYAL 308
+ RG N CGI + V +
Sbjct: 238 KILRGENHCGIESEIVAGI 256
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 34/221 (15%)
Query: 98 IPDHLDWREK---GFITPDWNQ---EDCGACYAFSIASAIQGQI---FKSTSEIEELSIQ 148
+P DWR + + NQ + CG+C+A + SA+ +I K LS+Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 149 QVVDCSIISGNLG-CAGGSLRNTLNYVQFAGGLMKEEDYPYKGKQSIC----------KF 197
V+DC GN G C GG+ + +Y G+ E Y+ K C +F
Sbjct: 61 NVIDC----GNAGSCEGGNDLSVWDYAH-QHGIPDETCNNYQAKDQECDKFNQCGTCNEF 115
Query: 198 KRPNIVVDISSWSVLPPQDEHALKVTLATV---GPIAVSINASPHTFQLYASGIYDDEAC 254
K + + + + W V + +A + GPI+ I A+ Y GIY +
Sbjct: 116 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAEYQD 174
Query: 255 TSDYVNHAMLLVGYTRNS----WILKNWWSHHWGDNGYMYL 291
T+ Y+NH + + G+ + WI++N W WG+ G++ +
Sbjct: 175 TT-YINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 47/254 (18%)
Query: 98 IPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSEIE--ELSIQQVV 151
+P+ D RE+ P +Q CG+C+AF A+ +I T+ E+S + ++
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 152 DCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPY---------KGKQSICK 196
C I GC GG N+ +GG+ PY G + C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 197 FK----RPNIVVDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSINASPH 239
+ + N + + + +S +D+H + K +A + GP+ +
Sbjct: 121 GEGDTPKCNKMCE-AGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-S 178
Query: 240 TFQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRG 294
F Y SG+Y EA D + HA+ ++G+ + W++ N W+ WGDNG+ + RG
Sbjct: 179 DFLTYKSGVYKHEA--GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG 236
Query: 295 NNRCGIANYAVYAL 308
N CGI + V +
Sbjct: 237 ENHCGIESEIVAGI 250
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 51/276 (18%)
Query: 81 RIRRTLVRSPESNESVL------IPDHLDWREKGFITPD----WNQEDCGACYAFSIASA 130
R+ T + P+ + V+ +P D RE+ P +Q CG+C+AF A
Sbjct: 41 RLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEA 100
Query: 131 IQGQIFKSTSE--IEELSIQQVVDCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKE- 183
I +I T+ E+S + ++ C GC GG N+ +GGL +
Sbjct: 101 ISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESH 160
Query: 184 ---EDYPYKGKQSICKFKRPNIVVDISS----------WSVLPPQDEH----------AL 220
Y + RP + + +S QD+H +
Sbjct: 161 VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 220
Query: 221 KVTLATV---GPIAVSINASPHTFQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS---- 272
K +A + GP+ + + F LY SG+Y + T + + HA+ ++G+ +
Sbjct: 221 KDIMAEIYKNGPVEGAFSVY-SDFLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPY 277
Query: 273 WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
W++ N W+ WGDNG+ + RG + CGI + V +
Sbjct: 278 WLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI 313
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 47/259 (18%)
Query: 93 NESVLIPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSEIE--ELS 146
+E + +P+ D RE+ P +Q CG+ +AF A+ +I T+ E+S
Sbjct: 58 SEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVS 117
Query: 147 IQQVVDCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPY---------KGK 191
+ ++ C I GC GG N+ +GG+ PY G
Sbjct: 118 AEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGA 177
Query: 192 QSICKFK----RPNIVVDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSI 234
+ C + + N + + + +S +D+H + K +A + GP+ +
Sbjct: 178 RPPCTGEGDTPKCNKMCE-AGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF 236
Query: 235 NASPHTFQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYM 289
F Y SG+Y EA D + HA+ ++G+ + W++ N W+ WGDNG+
Sbjct: 237 TVF-SDFLTYKSGVYKHEA--GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFF 293
Query: 290 YLKRGNNRCGIANYAVYAL 308
+ RG N CGI + V +
Sbjct: 294 KILRGENHCGIESEIVAGI 312
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 45/253 (17%)
Query: 98 IPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSE--IEELSIQQVV 151
+P D RE+ P +Q CG+C+AF AI +I T+ E+S + ++
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 152 DCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPYK---------GKQSIC- 195
C GC GG N+ +GGL + PY G + C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 196 -KFKRPNIV-VDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSINASPHT 240
+ P + +S QD+H + K +A + GP+ + +
Sbjct: 123 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 181
Query: 241 FQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGN 295
F LY SG+Y + T + + HA+ ++G+ + W++ N W+ WGDNG+ + RG
Sbjct: 182 FLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 296 NRCGIANYAVYAL 308
+ CGI + V +
Sbjct: 240 DHCGIESEVVAGI 252
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 45/253 (17%)
Query: 98 IPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSE--IEELSIQQVV 151
+P D RE+ P +Q CG+C+AF AI +I T+ E+S + ++
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 152 DCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPYK---------GKQSIC- 195
C GC GG N+ +GGL + PY G + C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 196 -KFKRPNIV-VDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSINASPHT 240
+ P + +S QD+H + K +A + GP+ + +
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 180
Query: 241 FQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGN 295
F LY SG+Y + T + + HA+ ++G+ + W++ N W+ WGDNG+ + RG
Sbjct: 181 FLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 296 NRCGIANYAVYAL 308
+ CGI + V +
Sbjct: 239 DHCGIESEVVAGI 251
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 45/253 (17%)
Query: 98 IPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSE--IEELSIQQVV 151
+P D RE+ P +Q CG+C+AF AI +I T+ E+S + ++
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 152 DCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKEE--DYPYK---------GKQSIC- 195
C GC GG N+ +GGL + PY G + C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 196 -KFKRPNIV-VDISSWSVLPPQDEH----------ALKVTLATV---GPIAVSINASPHT 240
+ P + +S QD+H + K +A + GP+ + +
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 179
Query: 241 FQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGN 295
F LY SG+Y + T + + HA+ ++G+ + W++ N W+ WGDNG+ + RG
Sbjct: 180 FLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 296 NRCGIANYAVYAL 308
+ CGI + V +
Sbjct: 238 DHCGIESEVVAGI 250
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 45/257 (17%)
Query: 94 ESVLIPDHLDWREKGFITPDW----NQEDCGACYAFSIASAIQGQIFKSTSE--IEELSI 147
E + +P D RE+ P +Q CG+ +AF AI +I T+ E+S
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 148 QQVVDCSIISGNLGCAGGSLRNTLNYVQ----FAGGLMKE----EDYPYKGKQSICKFKR 199
+ ++ C GC GG N+ +GGL + Y ++ R
Sbjct: 63 EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122
Query: 200 PNIVVDISS----------WSVLPPQDEH----------ALKVTLATV---GPIAVSINA 236
P + + +S QD+H + K +A + GP+ + +
Sbjct: 123 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 182
Query: 237 SPHTFQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYL 291
F LY SG+Y + T + + HA+ ++G+ + W++ N W+ WGDNG+ +
Sbjct: 183 Y-SDFLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 239
Query: 292 KRGNNRCGIANYAVYAL 308
RG + CGI + V +
Sbjct: 240 LRGQDHCGIESEVVAGI 256
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 207 SSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLV 266
SS+SV +E + + GP+ + + F LY SG+Y + HA+ ++
Sbjct: 149 SSYSVA--NNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVS-GEIMGGHAIRIL 204
Query: 267 GYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
G+ + W++ N W+ WGDNG+ + RG + CGI + V +
Sbjct: 205 GWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEIVAGM 250
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 207 SSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLV 266
SS+SV +E + + GP+ + + F LY SG+Y + HA+ ++
Sbjct: 149 SSYSVA--NNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVS-GEIMGGHAIRIL 204
Query: 267 GYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
G+ + W++ N W+ WGDNG+ + RG + CGI + V +
Sbjct: 205 GWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGM 250
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 207 SSWSVLPPQDEHALKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLV 266
SS+SV +E + + GP+ + + F LY SG+Y HA+ ++
Sbjct: 101 SSYSVA--NNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQ-HVSGEIMGGHAIRIL 156
Query: 267 GYTRNS----WILKNWWSHHWGDNGYMYLKRGNNRCGIANYAVYAL 308
G+ + W++ N W+ WGDNG+ + RG + CGI + V +
Sbjct: 157 GWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGM 202
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 241 FQLYASGIYDDEACTSDYVN-HAMLLVGYTRNS----WILKNWWSHHWGDNGYMYLKRGN 295
F LY SG+Y + T + + HA+ ++G+ + W++ N W+ WGDNG+ + RG
Sbjct: 131 FLLYKSGVY--QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 188
Query: 296 NRCGIANYAVYAL 308
+ CGI + V +
Sbjct: 189 DHCGIESEVVAGI 201
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 220 LKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY---------TR 270
+K + G + I A + SG C D +HA+ +VGY +
Sbjct: 160 IKTEVMNKGSVIAYIKAE-NVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK 218
Query: 271 NSWILKNWWSHHWGDNGYM 289
+ WI++N W +WGD GY
Sbjct: 219 SYWIVRNSWGPYWGDEGYF 237
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 220 LKVTLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGY---------TR 270
+K + G + I A + SG C D +HA+ +VGY +
Sbjct: 159 IKTEVMNKGSVIAYIKAE-NVMGYEFSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKK 217
Query: 271 NSWILKNWWSHHWGDNGYM 289
+ WI++N W +WGD GY
Sbjct: 218 SYWIVRNSWGPYWGDEGYF 236
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 273 WILKNWWSHHWGDNGYMYL-KRGNNRCGIANYAVYALI 309
W++KN W WG GY+ + K N CGIA+ A Y +
Sbjct: 5 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 223 TLATVGPIAVSINASPHTFQLYASGIYDDEACTSDYVNHAMLLVGYTRNSWILKNWWSHH 282
++A++ I +IN + A + DD++CTS + M + + WIL + +
Sbjct: 251 SIASLPDIVFTINGVQYPLSPSAYILQDDDSCTSGF--EGMDVPTSSGELWILGDVFIRQ 308
Query: 283 WGDNGYMYLKRGNNRCGIANYA 304
+ Y R NN+ G+A A
Sbjct: 309 Y----YTVFDRANNKVGLAPVA 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,780,067
Number of Sequences: 62578
Number of extensions: 394989
Number of successful extensions: 1016
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 120
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)