BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17050
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CG+ + D++ L H+ RT G + + C +CGK+F+ R++ + HQR HTGE
Sbjct: 50 YKCPECGKSFSDKKDLTRHQ------RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESK 144
+PY+C C K+F+ LR H+R HTGEKPY CP C K+F++ L H R H
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH------T 157
Query: 145 GATTFECKVCGCMLSSSPELCQHLVQHSDENTA 177
G ++C CG S L H H+ + T+
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CG+ + L H+ RT G + + C +CGK+F+ + HQR HTGE
Sbjct: 22 YACPECGKSFSRSDHLAEHQ------RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESK 144
+PY C C K+F+ LR H+R HTGEKPY CP C K+F+Q LR H R H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH------T 129
Query: 145 GATTFECKVCGCMLSSSPELCQHLVQHSDENTAK 178
G ++C CG S L H H+ E K
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPE 142
GE+PY+C C K+F+ L +H+R HTGEKPY CP C K+F+ + L H R H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----- 72
Query: 143 SKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
G ++C CG S L H H+ E
Sbjct: 73 -TGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
+ C +CGK+F+ S+ Q HQR HTGE+PY C C K+F+ L+KH+R HTGEKPY CP
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 119 ICSKAFNQRVVLREHIRAH 137
C K+F++ L H R H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
E+PY C C K+F+ L+KH+R HTGEKPY CP C K+F+Q L++H R H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH------ 55
Query: 144 KGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
G ++C CG S S L +H H ++
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CG+ + +L H+ RT G + + C +CGK+F+ S Q HQR HTGE
Sbjct: 5 YKCPECGKSFSQSSNLQKHQ------RTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+PY C C K+F+ L +H+R H +K
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQH 171
EKPY CP C K+F+Q L++H R H G ++C CG S S +L +H H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH------TGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 172 SDENTAK 178
+ E K
Sbjct: 56 TGEKPYK 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+ C + + D ++ H + T R+ C +CGK F S + HQ +HTGE+P+
Sbjct: 11 KGCTKMFRDNSAMRKH------LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 89 CRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
C + C K F+ LR H R+HTG++PYVCP C+K F Q L+ HI H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 64 CGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI--CS 121
C K F S+ + H H G R + C C KAF + L++H+ VHTGEKP+ C C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 122 KAFNQRVVLREHIRAHHSGPESKGATTFECKVCGC--MLSSSPELCQHLVQHS 172
K F+ LR H+R H G + C GC + S L H++ H+
Sbjct: 72 KRFSLDFNLRTHVRIH------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
F C CGK+F S+ H IH+ RPY C+YC K F ++KH +HTGEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 119 ICSKAFNQRVVLREHIRAH 137
+C KAF+Q L H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
C+ CG+ + +L H H R +PC CGK F+ +S + H IHTGE+P+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRP-----YPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 88 SCRYCYKAFADGGTLRKHERVHTG 111
C+ C KAF+ L H R HTG
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGA 146
+ C+ C K+F TL H +H+ +PY C C K F+Q+ +++H H G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH------TGE 55
Query: 147 TTFECKVCGCMLSSSPELCQHLVQHS 172
+C+VCG S S L H +H+
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 148 TFECKVCGCMLSSSPELCQHLVQHSD 173
+F+CK+CG S L HL+ HSD
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSD 26
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPIC 120
C CGK F+ + + H R HTG +PY C+ C A AD +L KH R+H+ E+P+ C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 121 SKAFNQRVVLREHIRAH--HSGPES 143
A L H+R+H SGP S
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKG 145
P+ C C K F+ L+ H R HTG KPY C C A L +H+R H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH------SD 61
Query: 146 ATTFECKVCGCMLSSSPELCQHLVQHSDEN 175
F+C++C +S +L HL H+ ++
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 114 PYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSD 173
P+ C +C K F+++ L+ H+R H G ++CK C + S L +HL HSD
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH------TGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 174 ENTAKNRVVPTAPXXXXXXXX-LLPHEGDGFPDT 206
E K ++ P A L H GD P +
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
H CE CG+ + + L H H ++ + C C SS H RIH+ ER
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-----YKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGE 112
P+ C+ C A + L H R HTG+
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ER P C + F+ +++ H RIHTG++P+ CR C + F+ +L H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
P+ C IC + F H + H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRI-FPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
E C + + +L H IR G+ F C C + F+ ++S H R HTGE+P+
Sbjct: 10 ESCDRRFSQKTNLDTH------IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 88 SCRYCYKAFADGGTLRKHERVHTGEK 113
+C C + FA T +H ++H +K
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F+Q+ L HIR H G F+C++C S L H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH------TGQKPFQCRICMRNFSQQASLNAHIR 55
Query: 170 QHSDE 174
H+ E
Sbjct: 56 THTGE 60
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ER P C + F+ +++ H RIHTG++P+ CR C + F+ L +H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
P+ C IC + F H + H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRI-FPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
E C + + +L H IR G+ F C C + F+ + H R HTGE+P+
Sbjct: 10 ESCDRRFSQKTNLDTH------IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 88 SCRYCYKAFADGGTLRKHERVHTGEK 113
+C C + FA T +H ++H +K
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F+Q+ L HIR H G F+C++C S L QH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH------TGQKPFQCRICMRNFSQHTGLNQHIR 55
Query: 170 QHSDE 174
H+ E
Sbjct: 56 THTGE 60
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
F C CG+ F + IH+R HT ERPY+C C+KAF LR H +H+ EKP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 119 ICSKAFNQRVVLREHIRAH 137
C K F Q L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
++ + C++C + F L HER HT E+PY C IC KAF ++ LR+H R HS +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKP 73
Query: 144 KGATTFECKVCGCMLSSSPELCQHLVQH 171
F+C+ CG S L H H
Sbjct: 74 -----FKCQECGKGFCQSRTLAVHKTLH 96
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 27 MCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+C+ CG + +LL+H+ H R + C C K F + + H+ IH+ E+P
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHT-----DERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 87 YSCRYCYKAFADGGTLRKHERVH 109
+ C+ C K F TL H+ +H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
E+PY C C KAF+ L +H+RVHTGEKPY C C KAF+Q L H R H SGP S
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHT 110
+ C +CGK F+ S HQR+HTGE+PY C C KAF+ L H+R+HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ER P C + F+ S+ H RIHTG++P+ CR C + F+ L H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
P+ C IC + F + + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+D L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRI-FPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
E C + D +L H IR G+ F C C + F+ H R HTGE+P+
Sbjct: 10 ESCDRRFSDSSNLTRH------IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 88 SCRYCYKAFADGGTLRKHERVHTGEK 113
+C C + FA ++H ++H +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F+ L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDE 174
H+ E
Sbjct: 56 THTGE 60
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYV 116
+++PC CGK+F +S + H +H G RPY C C K F L H ++HTG KPY
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 117 CPICSKAFNQRVVLREHI 134
C IC+K F R H+
Sbjct: 68 CNICAKRFMWRDSFHRHV 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
+G++ Y C+ C K+F +H +H G +PY C +C K F + L H++ H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH---- 60
Query: 142 ESKGATTFECKVC 154
G +EC +C
Sbjct: 61 --TGIKPYECNIC 71
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%)
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ER P C + F+ S H RIHTG++P+ CR C + F+ L H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
P+ C IC + F + + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ G+L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRI-FPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
E C + SL H IR G+ F C C + F+ H R HTGE+P+
Sbjct: 10 ESCDRRFSQSGSLTRH------IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 88 SCRYCYKAFADGGTLRKHERVHTGEK 113
+C C + FA ++H ++H +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F+Q L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDEN 175
H+ E
Sbjct: 56 THTGEK 61
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%)
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ER P C + F+ + H RIHTG++P+ CR C + F+ L H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
P+ C IC + F + + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
F C C + F+ H R HTGE+P++C C + FA ++H ++H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDEN 175
H+ E
Sbjct: 56 THTGEK 61
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
P C + F+ + H RIHTG++P+ CR C + F+ L H R HTGEKP+ C I
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 120 CSKAFNQRVVLREHIRAH 137
C + F + + H + H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
F C C + F+ H R HTGE+P++C C + FA ++H ++H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDEN 175
H+ E
Sbjct: 56 THTGEK 61
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
P C + F+ H RIHTG++P+ CR C + F+ L H R HTGEKP+ C I
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 120 CSKAFNQRVVLREHIRAH 137
C + F + + H + H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
F C C + F+ H R HTGE+P++C C + FA ++H ++H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDEN 175
H+ E
Sbjct: 56 THTGEK 61
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
P C + F+ H RIHTG++P+ CR C + F+ L H R HTGEKP+ C I
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 120 CSKAFNQRVVLREHIRAH 137
C + F + + H + H
Sbjct: 67 CGRKFARSDERKRHTKIH 84
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 56
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 57 --TGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 54
Query: 170 QHSDEN 175
H+ E
Sbjct: 55 THTGEK 60
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
P C + F+ H RIHTG++P+ CR C + F+ L H R HTGEKP+ C I
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 120 CSKAFNQRVVLREHIRAH 137
C + F + + H + H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 84 ERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQH 171
G F C +CG + S E +H H
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
E+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 170 QHSDEN 175
H+ E
Sbjct: 56 THTGEK 61
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCG-----KTFNSRSSQQIHQRIHTG 83
+ C +E+ D Q LVH + I ER + F CH G + F ++ +H R HTG
Sbjct: 7 DGCSQEF-DSQEQLVHHINSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 84 ERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC--PICSKAFNQRVVLREHIRAHHS 139
E+P+ C + C K+++ L+ H R HTGEKPY+C CSKAF+ RA H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS-----DRAKHQ 119
Query: 140 GPESKGATTFECKVCGC 156
+ CK+ GC
Sbjct: 120 NRTHSNEKPYVCKLPGC 136
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 41 LLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFAD 98
L+VH RH E+ C K+++ + + H R HTGE+PY C + C KAF++
Sbjct: 55 LVVHMRRHT---GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Query: 99 GGTLRKHE-RVHTGEKPYVC--PICSKAFNQRVVLREHIRAHH 138
KH+ R H+ EKPYVC P C+K + LR+H++ H
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 64 CGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPICS 121
CGKT+ S + H R HTGE+PY C + C FA L +H R HTG +P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 122 KAFNQRVVLREHIRAH 137
+AF++ L H++ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 64 CGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPICS 121
CGKT+ S + H R HTGE+PY C + C FA L +H R HTG +P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 122 KAFNQRVVLREHIRAH 137
+AF++ L H++ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 31 CGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCR 90
C + Y+ L +H +H E+ DC + F+ + HQR HTG +P+ C+
Sbjct: 14 CNKRYFKLSHLQMHSRKHT---GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
Query: 91 YCYKAFADGGTLRKHERVHTGEKPYVC--PICSKAFNQRVVLREHIRAH 137
C + F+ L+ H R HTGEKP+ C P C K F + L H H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 84 ERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAHHS 139
+RP+ C Y C K + L+ H R HTGEKPY C C + F++ L+ H R H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-- 61
Query: 140 GPESKGATTFECKVCGCMLSSSPELCQHLVQHSDEN 175
G F+CK C S S L H H+ E
Sbjct: 62 ----TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 54 ERGRIFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVH 109
E+ RI C C K + S + H R HTGE+PY C + C FA L +H R H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG KP+ C +C+++F++ L H++ H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 85 RPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAHHSG 140
R + C Y C K + L+ H R HTGEKPY C C F + L H R H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH--- 70
Query: 141 PESKGATTFECKVCGCMLSSSPELCQHLVQHSD 173
GA F+C VC S S L H+ +H +
Sbjct: 71 ---TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE--KPYVCP 118
C CGK F H+ H+GE+PYSC C F + H R H G KPY+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 119 ICSKAFNQRVVLREHIRAHHSGPES 143
C K F++ L HI+ HSGP S
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
+G +C C K F D L +H+ H+GEKPY CP+C F ++ + H+R+H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH---- 58
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQ 170
+ + C+ CG S L H+ Q
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGE--R 85
CE CG+ + D L HK H + + C CG F + H R H G +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKP-----YSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 86 PYSCRYCYKAFADGGTLRKH-ERVHTG 111
PY C+ C K F+ L H ++VH+G
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 56 GRIF-PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
GR++ C C +++ +S + H IH+ E+ Y CRYC K F KHE HTGE+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVC 154
Y C C K+F + HI++ HS S + + C
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC 118
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRA 136
++ I G Y C C +++ +LR+H +H+ EK Y C C K F +H
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EI 71
Query: 137 HHSGPESKGATTFECKVCG 155
HH+G ++C CG
Sbjct: 72 HHTGER-----RYQCLACG 85
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 65 GKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--C 120
GK+F ++ H R+HTGE+P+ C + C K FA L+ H+R HTGEKP+ C C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 121 SKAFNQRVVLREHIRAH---HSGPES 143
+ F ++H+ H SGP S
Sbjct: 129 DRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 26 HMC--EDC---GEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQQIH 77
H+C E+C G+ + + L+ H IR G + FPC CGK F + +IH
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNH------IRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Query: 78 QRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEK 113
+R HTGE+P+ C + C + FA+ +KH VHT +K
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQR---IHTGE 84
C C +++ + L VH +H + F C CGK + + + H+ ++ E
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP-----FECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
+ ++C C + F LR H HTGE PY C CS+ F Q+ L+ H+ HSGP S
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
+G C C+K F L+ H R HTGEKP+ CP C K + ++ L EH
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EARNC 59
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
++ F C VC EL H+V H+ E
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
R + C +CGK+F+ S H+R HTGE+PY C C KAF L H RVHTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
R Y C C K+F+ L KH R HTGEKPY C C KAF QR L H R H SGP S
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
C++CG+ + L H+ RT G + + C +CGK F RS H R+HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHR------RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 87 YS 88
S
Sbjct: 75 SS 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
++PY C C +F G L H+ VHTGEKPY C IC FN+ L+ H R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+ C C +F + + H+ +HTGE+PY C C F L+ H R+H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
ERP+ C +C K + D L +H R H G +P CP C K F + + H++ H + P
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
R F C+ CGKT+ S H+R H G RP SC C K F D + +H +VH +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG 140
+ C C +AFA L++H R HT EKPY C +C++AF +R +L H + HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKH-ERVHTGE 112
F C C + F + + H R HT E+PY C C +AF L +H +++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 63 DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI- 119
DCG +N Q H HTGE+P+ C+ C K F L +H HTGEK + C
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 120 -CSKAFNQRVVLREHIRAHHS 139
C F + +++H H+
Sbjct: 70 GCDLRFTTKANMKKHFNRFHN 90
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 27/56 (48%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
G C YC K F L H R HTGEKPY C C A Q+ LR H+ HH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKH-ERVH 109
C CGK F S IH R HTGE+PY C +C A A +LR H ER H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 63 DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI- 119
DCG +N Q H HTGE+P+ C+ C K F L +H HTGEK + C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 120 -CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
C F + +++H H+ FE CG +L H H+ +
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQQ 132
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTG 111
++ CH +CGK F + ++HQ HT + PY C + C K F+ L++HE+VH G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 53/150 (35%), Gaps = 43/150 (28%)
Query: 30 DCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHD--CGKTFNSRSSQQIHQRIHTGERPY 87
DCG Y L H +H + FPC + C K F S H HTGE+ +
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKP-----FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 88 SC--------------------RY--------------CYKAFADGGTLRKHERVHTGEK 113
+C R+ C KAF L+ H+ HT +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 114 PYVCP--ICSKAFNQRVVLREHIRAHHSGP 141
PY CP C K F+ L+ H + H P
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 85 RPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
RPY+C C + F+ L +H R+HTG+KP+ C IC + F++ L HIR H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHT 110
P C + F+ H RIHTG++P+ CR C + F+ L H R HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 113 KPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQ 170
+PY CP+ C + F++ L HIR H G F+C++C S S L H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIH------TGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 171 HS 172
H+
Sbjct: 72 HT 73
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAF 124
+P+ CR C + F+ L H R HTGEKP+ C IC + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERV 108
F C C + F+ H R HTGE+P++C C + FA ++H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHL-VQH 171
KP+ C IC + F++ L HIR H G F C +CG + S E +H +QH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH------TGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
ERPY C C KAF D L KH+++HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
R + C CGK F RS+ HQ+IHTGE+P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
E+PY+C +C KAF R L +H + H SGP S
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
++F C++C KTF SS +HQRIHTGE+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
++ + C C K F +L H+R+HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C YC KAF L +H+R+HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C CGK F + HQRIHTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPYVC C KAF L H R H SGP S
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAFA L +H+R+HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F +++ HQRIHTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF Q+ L +H R H SGP S
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTG 111
++ CH +CGK F + ++HQ HT + PY C + C K F+ L++HE+VH G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 87 YSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAHHSGP 141
Y C + C KAF L+ H+ HT + PY CP C K F+ L+ H + H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+GE+PY C+ C K+F+ G+L HER+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+ C +CGK+F+ R S +H+R+HTG P S
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
+GEKPY C C K+F+QR L H R H SGP S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTG 111
++ CH +CGK F + ++HQ HT + PY C + C K F+ L++HE+VH G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 87 YSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAHHSGP 141
Y C + C KAF L+ H+ HT + PY CP C K F+ L+ H + H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 64 CGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVH 109
CGKT+ S + H R HTGE+P+SC + C + FA L +H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 92 CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
C K + L+ H R HTGEKP+ C C + F + L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C+K+F G +L H+R+HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C C K+F SS +HQRIHTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C +C K+F L H R H SGP S
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ L +H+R+HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F+ S HQRIHTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF+Q L H R H SGP S
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY+C C KAF L++H+R+HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F S Q HQRIHTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF L+EH R H SGP S
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C+ C KAF+ L +H+RVHTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F+ + HQR+HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF+Q L +H R H SGP S
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 100 GTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLS 159
G+ R HTGEKPY C C K F Q+ +L H + +H P A F C CG +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD-PNFVPA-AFVCSKCGKTFT 58
Query: 160 SSPELCQH 167
+ +H
Sbjct: 59 RRNTMARH 66
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKH-ERVHTGE---KPYVCPICSKAFNQRVVLREH- 133
R HTGE+PY+C +C K F L H +R H +VC C K F +R + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 134 --------IRAHHSGPES 143
+ +SGP S
Sbjct: 68 DNCAGPDGVEGENSGPSS 85
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ +L +H+RVH+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C +C KAF+ L +H R H SGP S
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C C K F+ +S HQR+H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKH--ERVHTGEKPYVCPICSKAFNQRVVLREHIRA 136
R H+GE+PY C C+ F GT++ H ++ + CP C ++ L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 137 HH--SGPES 143
H SGP S
Sbjct: 68 QHSYSGPSS 76
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 107 RVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQ 166
R H+GEKPY C IC F Q ++ HI H+ +K F C C +++ +L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK----FHCPHCDTVIARKSDLGV 63
Query: 167 HL-VQHS 172
HL QHS
Sbjct: 64 HLRKQHS 70
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 139 SGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDENTAK 178
SG G +EC +C + S + H++Q EN AK
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK 45
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+PY C C KAF+ L +H+RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F+ S HQR+HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
KPY C C KAF+Q L H R H SGP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+PY C +C + FAD G L++H R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C+ C KAF L +H++ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C +CSKAF Q+ L +H + H SGP S
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C C K F ++ HQ+ HTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY+C+ C K+F L KH+RVH+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK+F S HQR+H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K+F L +H R H SGP S
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
ER Y C C KAFA TL H+R+HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
R + C +CGK F +S+ +HQRIHTGE+P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
R++ C +CGK+F + S +H+RIHTG P S
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+G+R Y C+ C K+F G+L HER+HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
+G++ Y C C K+F Q+ L H R H SGP S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF D L H+++HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F RS+ HQ+IHTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF R L H + H SGP S
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C DCGK+F +S +HQRIHTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K+F L H+R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K+F ++ L H R H SGP S
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C KAF+D L +H R+HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C DCGK F+ H+RIHTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C KAF+ + L +H R H SGP S
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF D + +H+R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F SS HQR+HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF +H R H SGP S
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F +S+ +HQ+IHTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKP 114
+ C C KAF TL H+++HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
ERP+ C C K+F L +H+R+HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERP 86
C++CGK+F + HQRIHTGE+P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F +RSS IHQ H+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF +L H+ H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
EKPY C C KAF R L H +A HSG + G ++
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPSS 45
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F+ L H+R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGKTF+ +S HQR HTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K F+Q+ +L H R H SGP S
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C CGK +NS+ + +HQ++HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K + L H++VHTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K +N + L H + H SGP S
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F +++ IHQ+IHTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E P+ C C K F L H+++HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +C K FN++S+ +HQR HTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C KAF L H+R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C KAFN + L H R H SGP S
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L +H+R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S HQRIHTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K F L H R H SGP S
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK+F+ S HQRIHTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K+F+ L H+R+HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K F L H+RVHTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F S HQR+HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C K F Q L H R H SGP S
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K+F L +H R+HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK+F +S H+RIHTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY+C C K+F Q+ L H R H SGP S
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L H R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S H RIHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K F Q L H R H SGP S
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+GE+PY C+ C KAF L H RVHTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
+GEKPYVC C KAF Q L H R H SGP S
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSS 41
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CGK F S IH+R+HTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK++N R HQR+HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K++ L +H+RVHTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C K++NQRV L +H R H SGP S
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K F L H+RVHTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F S HQR+HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C K F Q L H R H SGP S
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K+F L H+++HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C CGK+F +S +HQ+IHTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C IC K+F ++ L H + H SGP S
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+GE+PY C C K F+ L H+R+HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C++CGK F+S+S +HQRIHTGE+
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
+GEKPY C C K F+ + L H R H SGP S
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSS 43
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F+ RS+ +H ++HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K F+ L H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C K F++R L H + H SGP S
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHER 107
+ C +CG S + H R HT RPY C YC +F G L KH +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRA 136
Y C C L+KH R HT +PY C C+ +F + L +H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ G+L H RVHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
EKPY C C KAF+Q+ L HIR H SGP S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+ C CGK F+ + S +H R+HTG P S
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+G++P C C K F L KH+R+H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERP 86
C++CGKTF S HQRIH+GE+P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
+G+KP VC C K F Q L +H R H SGP S
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPSS 43
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ +L H+R+H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C CGK F+ R S +HQRIH+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C +C KAF+ R L H R H SGP S
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
ER Y C C KAF TL H+R+H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
R + C +CGK F +S+ +HQRIH GE+P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
E+ Y C C KAF Q+ L H R H SGP S
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+ Y+C+ C K+F+ L KHER+H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+++ C +CGK+F+ H+R+H+GE+P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C+ CGK F+ RSS HQ IHTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ +L H+ +HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
EKPY C C KAF+ R L H +A H+G + G ++
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPSS 45
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ CR C K+F+ L H+R+HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERP 86
C +CGK+F+ S +HQRIHTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F+ SS HQ IHTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+PY C C KAF+ +L H+ +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F S+S IH R HTGE+P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+G +PY C C KAF L H R HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
+G KPY C C KAF + L H+R H SGP S
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+GE+PYSC C KAF L H+ VHTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F +S +H+ +HTG +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
+GEKPY C C KAF + L H + H+G + G ++
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKPSGPSS 43
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C DCGK+F +S +IHQ+ HTGER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
EKPY C C K+F + LR H + H HSGP S
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
E+PY C C K+F LR H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L H+R+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S HQRIHTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K F Q L H R H SGP S
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C DCGK +N R + +HQR+H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K +N+R+ L H R H SGP S
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
E+PY C C K + L H+RVH GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+G++PY C C KAF L HER+HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C++CGK F +S IH+RIHTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 34.3 bits (77), Expect = 0.091, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAF--NQRVVLREHIRAHHSGPES 143
+G+KPYVC C KAF ++++ E I SGP S
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSS 41
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ + C CGK F+ S Q HQR+HTGE+P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+ Y C C K F+ L+ H+RVHTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EK Y C +C K F+Q L+ H R H SGP S
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C+ C KAF L H R+HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F H RIHTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C KAF Q + L H+R H SGP S
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
++PY C+ C K F G L +H+RVHTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C +C KTF H+R+HTGER
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
++P+ C +C K+F G L H+R+HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
F C CGK+F ++ + HQRIHTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERP 86
CH+CG+ F +S HQRIHTGE+P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+ + C C + F L +H+R+HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF L H+ +HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F + S+ HQ IHTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C++CGK F +RS+ HQ IHTGE+
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
T E+PY C C KAF L H+ +HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
T EKPY C C KAF R L H H SGP S
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSS 45
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L +H RVHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S H+R+HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
EKPY C C K F Q L H R H G S
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F+ S HQ+IHTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+ Y C C K F+ L +H+++HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F+S+S IH R H+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF+ L H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF+ + L H+R H SGP S
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
++ C++CGK F+ +S IHQRIHTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+GE+ + C C KAF+ L H+R+HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C DCGK F +S IHQ+ HTGER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
EKPY C C KAF ++ L H ++H HSGP S
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
E+PY C C KAF L H++ HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L +H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S H+ IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
EKPY C C K F Q L H R H+G + G ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPSS 45
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C++C K FN++S+ +HQR HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGE 112
E+PY C C KAF L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
EKPY C C KAFN + L H R H SGP S
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L +H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S H+ IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ CH+CGK F S HQ IHTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L +H+ +HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGE 112
E+PYSC C KAF L +H RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C +C KAF L +H+R H SGP S
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHT 110
+GE+PYSC C + F+D L +H+++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAF--NQRVVLREHIRAHHSGPES 143
+GEKPY C C + F N R+V + + SGP S
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C DCGK F +S IHQR HTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+GE+PY C C KAF L H+R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
+GEKPY C C KAF + L H R H SGP S
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSS 41
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+ + CR C F+ +LR H+ VH GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ + C +C F+ SS ++HQ +H GE+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF L KH+++HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F RS+ HQ+IHT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY+C C KAF R L +H + H SGP S
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEK 113
P CR C K F G L++H R+H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
C +CGK F + + + H RIH+GE+
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
+GE PY C C KAFN++ L H R H SGP S
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+GE PY C C KAF L H+R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CGK FN + HQR H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH-----HSGPES 143
+GEKPY CP+C F ++ + H+R+H SGP S
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQ-HSD 173
++CP+C ++F + H+R H+ A F CK C SSP L +H+ + H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHA------AQVFPCKYCPATFYSSPGLTRHINKCHPS 82
Query: 174 EN 175
EN
Sbjct: 83 EN 84
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKH 105
C CG++F S+ +Q+ H R+ + + C+YC F L +H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+RPY C C KAF +L H R HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
R + C +CGK F ++SS H+R HTGE+P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C+ C KAF L +H VH+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C CGK F S H +H+GERP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHS 139
EKPY C +C KAF + H+ HHS
Sbjct: 10 EKPYKCQVCGKAFR----VSSHLVQHHS 33
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
++ C +C KTF+ S IHQRIHTGE P
Sbjct: 9 KLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+GE+ + C C K F+ L H+R+HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+GE+PY C C KAF HER+HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAFNQR--VVLREHIRAHHSGPES 143
+GEKPYVC C KAF ++ + E I SGP S
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSS 41
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CGK F +S H+RIHTGE
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
T E+P+ C C K+F L H +HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C C K+F RS+ H+ IHTGE+P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
T EKP+ C C K+F QR L H R H+G + G ++
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEKPSGPSS 45
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
++PY C C K F L +H +HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C++CGK F S H+ IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E PY C C KAF+ L H+R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ CH+CGK F+ + HQR H GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
E PY C C KAF+++ L H R H SGP S
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.7 bits (78), Expect = 0.058, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 56 GRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
G+IF C C K F + S Q H RIHT E+
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEK 113
++C YC K F +L+ H R+HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C++CGK F S+S IH R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
KPYVC C KAF + L H R H SGP S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGE 112
+PY C C KAF L H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
T E P+ C C K F+ L KH+ +H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C++CGKTF+ + HQ IH GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 101 TLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH---SGPES 143
LR HER+H ++P+ C CS Q L +H++ H SGP S
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 71 RSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+++ +IH+RIH +RP+ C YC L KH + G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K+F L +H VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C CGK+F RS H +HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C IC K+F R L H H SGP S
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+GE+P+ C C KAF+ L H++ H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
+GEKP+ C C KAF+ + L H + H SGP S
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C C K F+S+S +HQ+ H E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C KAF L +H R+HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F+ + H+RIHTG RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C KAF++ L EH R H SGP S
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
F C +CGK F + S HQR H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+P+ C C K F H+R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C C KTF+ +S +HQR HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+PY C C K F+ L H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ C +CGK + R HQR+HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
E+PY C C K + L H+RVHTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKPY C C K + +R+ L H R H SGP S
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAFN--QRVVLREHIRAHHSGPES 143
+GEKPYVC C KAF ++++ + I SGP S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPSS 41
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTG 83
+ C DCGK F +S +HQ IHTG
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTG 111
+GE+PY C C KAF L H+ +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
+KPY C C KAF Q L H R +H+G + G ++
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHER-VHTGEKP 114
++PY C C KAF +L +H R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 31 CGEEYWDRQSLLVHKARHDVIRTERGRIFPCHD--CGKTFNSRSSQQIHQRIHTGERPYS 88
CG + +RQ L HK + + + F C + CGK+FN + + H ++H+ R Y
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQ----KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
Query: 89 CRY 91
C +
Sbjct: 71 CEF 73
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 92 CYKAFADGGTLRKHERV-HTGEKPYVCP--ICSKAFNQRVVLREHIRAH 137
C + F++ L H++ H +K + CP C K+FN + L+EH++ H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 64 CGKTFNSRSSQQIHQRI-HTGERPYSCR--YCYKAFADGGTLRKHERVHTGEKPYVC 117
CG+ F++R H++ H ++ +SC C K+F L++H ++H+ + Y+C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
T E+PY C C KAF L H+R H+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ C +CGK F S +HQR H+GE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 110 TGEKPYVCPICSKAF--NQRVVLREHIRAHHSGPES 143
T EKPY C C KAF N ++++ + + SGP S
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERP 86
C DCGK F S+ H+RIHTGE+P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
ER + C C K F +H R+HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+P+ C+ C + F+ L+ H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHT 110
+G+RP+ CR C AF +H +VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH 137
+G++P+VC IC AF + H++ H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C K F L H VHTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C +CGK F R H +HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C F TL+ H R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
EKPY C IC F L+ H+R H SGP S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+PC CG F + + H RIHTG P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGER 85
C +CGK F S+ +IHQR+H GE+
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEK 39
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
E+ ++C C K F LR H+RVH GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRA-HHSGPES 143
E PY+C C K+F QR L H R+ SGP S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEKP 114
PY C C K+F+ L H+R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERP 86
+ C C K+F+ + +HQR+HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+P C C KAF +L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
KP C +C KAF Q L H+R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 31.2 bits (69), Expect = 0.74, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPE 142
+G YVC +C K F + LR HIR H +
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 85 RPYSC--RYCYKAFADGGTLRKHERVHTGEK 113
RP+ C YC K F L++H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
E+PY C C F LR H +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH-HSGPES 143
EKPY C C F Q LR H+ H SGP S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTG 111
E+PY C C KAF L HER H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH--SGPES 143
EKPY C C KAF + +L H R H SGP S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 27.3 bits (59), Expect = 9.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTG 83
+ C++CGK F +S +H+R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTG 111
RPYSC C K F+ + H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTG 83
R + C CGK F+ + + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTG 83
++ CH +CG++FN R H++IHTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
E P+ C C + F QR L +H R H SGP S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
R F C++CGK F RS H R+H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
E+P+ C C K F +R L H+R H SGP S
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
ERP+ C C K F L H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 85 RPYSCRYCYKAFADGGTLRKH-ERVHTGEKPYVCPI 119
+PY C+ C K F+ L H ++VHT E+P+ C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 56 GRIFPCHDCGKTFNSRSSQQIH-QRIHTGERPYSCRYCYKAFADG 99
G+ + C CGK F+ H +++HT ERP+ C+ + G
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERV-HTGEK 113
+ Y C+YC K FAD L+ H + H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
KPYVC C K F Q L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 88 SCRYCYKAFADGGTLRKHERVHTGEKPY 115
+C C K F D L +H+ H+GEKPY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHH 138
YVC +C+ F+ L EH+R+ H
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDH 122
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHH 138
YVC +C+ F+ L EH+R+ H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEK 113
+ C C +AFA L++H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
+VC +C++AF ++ L+ H R+H
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSH 25
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+PY C C K+F+ L +H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 462
Length = 88
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 147 TTFECKVCGCMLSSSPELCQHLVQHSDE 174
+T++CK C L S+ EL HL H++E
Sbjct: 24 STYQCKHCDSKLQSTAELTSHLNIHNEE 51
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSG 140
Y C +C++AF +R +L H + HSG
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 115 YVCPICSKAFNQRVVLREHIR 135
+VCP+C F+ V L++HIR
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIR 95
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFN 125
+ C C F+ +L++H R E VCP+C K F
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFT 111
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
EKP C C KAF + L H R H HSGP S
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 114 PYVCPICSKAFNQRVVLREHIRAH 137
+VC +C++AF ++ L+ H R+H
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSH 25
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEK 113
+ C C +AFA L++H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2ELO|A Chain A, Solution Structure Of The 12th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 117 CPICSKAFNQRVVLREHIRAHH 138
CP+C K+F++ +++ HI+ +H
Sbjct: 12 CPVCEKSFSEDRLIKSHIKTNH 33
>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHT 82
++ CH +CG++FN R H++IHT
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
E+PY C C K F + L EH++ H SGP S
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEK 113
+ C C +AFA L++H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH----SGPES 143
EKP+ C C F+ L +H+R+H SGP S
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+PY C C A A L H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERV--HTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
GE Y C+ C + + +H K Y CP C K F ++ + H++ H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 27 MCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQ 78
CE CG + SL H+ +H T FPC CGK F S H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKH--AETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGE 112
E PY C C K F+ L H++ H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,711,528
Number of Sequences: 62578
Number of extensions: 344874
Number of successful extensions: 1672
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 731
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)