RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17050
(295 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 42.8 bits (101), Expect = 2e-06
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQ 126
LR+H R HTGEKPY CP+C K+F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 75 QIHQRIHTGERPYSCRYCYKAFA 97
+ H R HTGE+PY C C K+F+
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSFS 25
Score = 24.3 bits (53), Expect = 9.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 40 SLLVHKARHDVIRTERGRIFPCHDCGKTFNS 70
+L H H + + C CGK+F+S
Sbjct: 1 NLRRHMRTHTGEK-----PYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 36.4 bits (84), Expect = 0.004
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 114 PYVCPICSKAFNQRVVLREHIR-AHHSGPESKGATTFECKVCGCMLSSSPELCQHL 168
PYVCP+C F+ V L++HIR H + C VCG ++ H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEH---------SKVCPVCGKEFRNTDSTLDHV 119
Score = 34.5 bits (79), Expect = 0.017
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHS 139
PY C C F+ +L++H R K VCP+C K F +H+ H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHN 124
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 31.9 bits (73), Expect = 0.018
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 61 CHDCGKTFNSRSSQQIHQRIH 81
C DCGK+F+ +S+ + H R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.17
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 116 VCPICSKAFNQRVVLREHIRAH 137
CP C K+F+++ L+ H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 0.98
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 88 SCRYCYKAFADGGTLRKHERVH 109
C C K+F+ L++H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 31.7 bits (72), Expect = 0.024
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 115 YVCPICSKAFNQRVVLREHIRAH 137
Y CP C K F + LREH+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.049
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIH 81
+ C +CGK F S+S+ + H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 1.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 87 YSCRYCYKAFADGGTLRKHERVH 109
Y C C K F LR+H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 2.8
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARH 48
+ C +CG+ + + +L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.7 bits (54), Expect = 6.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 149 FECKVCGCMLSSSPELCQHLVQH 171
+ C CG + S L +H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 31.5 bits (71), Expect = 0.032
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHH 138
+ CP+C K+F+ + L+ H+R HH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 26.1 bits (57), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIH 81
F C CGK+F+S+ + + H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.1 bits (57), Expect = 2.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 87 YSCRYCYKAFADGGTLRKHERVH 109
+ C C K+F+ L++H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 34.0 bits (78), Expect = 0.095
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFE 150
YVC +C F+ L EH R HS S T+
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRTTHSIGASSLLTSPA 109
Score = 32.4 bits (74), Expect = 0.33
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 5 KPTASAARPAASKGPPASPASHMCEDCGEEYWDRQSLLVHKA 46
KP A + P + K P +P+S++C C E+ L H+
Sbjct: 53 KPAAVISPPQSKKATPINPSSYVCNVCMAEFSSMDQLAEHQR 94
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 32.4 bits (73), Expect = 0.27
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKP 114
R C +C +F+ H R HTGE+P C Y C K+F+ L +H R H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 115 YVCPICSKAFNQ 126
+ N
Sbjct: 92 DLNSKSLPLSNS 103
Score = 29.3 bits (65), Expect = 3.0
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 36 WDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKA 95
+L +H H + R C K+FN + H++IHT P C K+
Sbjct: 399 KRDSNLSLHIITH---LSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS-ILKS 454
Query: 96 FADGGTLRKH 105
F L H
Sbjct: 455 FRRDLDLSNH 464
>gnl|CDD|179886 PRK04860, PRK04860, hypothetical protein; Provisional.
Length = 160
Score = 31.4 bits (72), Expect = 0.29
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 65 GKTFNSRSSQQIHQ-------RIHTGERPYSCRYC 92
GKTF R Q HQ R+ GE Y CR C
Sbjct: 115 GKTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCRRC 149
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 31.6 bits (71), Expect = 0.45
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 21/77 (27%)
Query: 83 GERPYSCRY--CYKAFADGGTLR-------------------KHERVHTGEKPYVCPICS 121
+PY C C K + + L+ K +KPY C +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 122 KAFNQRVVLREHIRAHH 138
K + L+ H + H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 27.7 bits (61), Expect = 1.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHS 139
Y CPIC + + +R + H+R H++
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNT 30
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.4 bits (59), Expect = 1.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSG 140
+ C +C K F+ L H ++H S
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSHCSL 27
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related
proteins. Fungal histone deacetylase Hos3 from
Saccharomyces cerevisiae is a Zn-dependent enzyme
belonging to HDAC class II. It catalyzes hydrolysis of
an N(6)-acetyl-lysine residue of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
Histone deacetylases usually act via association with
DNA binding proteins to target specific chromatin
regions. Hos3 deacetylase is homodimer, in vitro it
shows specificity to H4, H3 and H2A.
Length = 353
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 257 SMDKAASPVKTKTKVRFAAVRPPAFHC 283
++D P TK F A+RPP HC
Sbjct: 96 AVDSVFKPESPGTKRAFVAIRPPGHHC 122
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 29.0 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 141 PESKGATTFECKVCGCMLSSSPELCQHLVQ--HSDENTA-KNRVVPTAPRKYKR 191
P+S A C+VC ++S + QH+V+ +E T KN +KY R
Sbjct: 60 PDSGSAPVVNCRVCQSLISVEGKEHQHVVKCGVCNEATPIKN---APPGKKYVR 110
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 29.1 bits (65), Expect = 3.0
Identities = 27/117 (23%), Positives = 35/117 (29%), Gaps = 24/117 (20%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
VC IC G G C VC +C+
Sbjct: 13 KHGGGQVCQICGDNV---------------GKTVDGEPFVACDVCAF------PVCRPCY 51
Query: 170 QHSDENTAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASASKSAPADGTDTK 226
++ E N+ P KYKR + GD D D D+ AS P+ D K
Sbjct: 52 EY--ERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDGDADDGASDFNY-PSSNQDQK 105
>gnl|CDD|234928 PRK01254, PRK01254, hypothetical protein; Provisional.
Length = 707
Score = 29.3 bits (66), Expect = 3.1
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 175 NTAKNRVVPTAPRKYK---RRRKLLPHEGDGFPDTDDDEEASASKSAPADGTDTKPSASL 231
TA R A + R P + D P+ D+ A A + + A
Sbjct: 217 GTAVIR--KEALPGWSGVDSTRIDTPGKIDPIPNPYGDDLPCADNKPVAPKKNQEAKAIT 274
Query: 232 LQPPRKPTPE 241
+QPPR E
Sbjct: 275 VQPPRPKPWE 284
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 28.8 bits (64), Expect = 3.5
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 203 FPDTDDDEEASASKSAPADGTDTKPSASLLQPPRKPTPEYDREFL--EWEMKVGI 255
+P +D + +A+ A A+ SAS R PTP R E + GI
Sbjct: 77 YPGSDAPADRTAASDANAEDAAAARSASKPTATRGPTPAAKRGQAGGEGVIAAGI 131
>gnl|CDD|150045 pfam09237, GAGA, GAGA factor. Members of this family bind to a
5'-GAGAG-3' DNA consensus binding site, and contain a
Cys2-His2 zinc finger core as well as an N-terminal
extension containing two highly basic regions. The zinc
finger core binds in the DNA major groove and recognises
the first three GAG bases of the consensus in a manner
similar to that seen in other classical zinc finger-DNA
complexes. The second basic region forms a helix that
interacts in the major groove recognising the last G of
the consensus, while the first basic region wraps around
the DNA in the minor groove and recognises the A in the
fourth position of the consensus sequence.
Length = 54
Score = 26.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHH 138
E+P CPIC Q LR H+ H
Sbjct: 22 EQPATCPICQAVIRQSRNLRRHLELRH 48
>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 402
Score = 28.6 bits (64), Expect = 4.6
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 20 PASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTE------RGRIFPCHDCGKTF 68
P H C +CG+ R + K + + R R + C CGK F
Sbjct: 33 AEMPRKHRCPECGQRTIRRHGWRIRKIQDLPLFEVPVYLFLRKRRYKCCRCGKRF 87
>gnl|CDD|226397 COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms].
Length = 176
Score = 27.8 bits (62), Expect = 4.7
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 27/90 (30%)
Query: 25 SHMCEDCGE---EYWDRQSLLVHKARHDV-------------IRTERGRIFPCHDCGKTF 68
++CE C + E +D + +LV + H+V I E + CH+CG TF
Sbjct: 26 LYVCETCAKPHSEAYDIEHILV-FSIHNVLSGELDNLKTKWQIEQEDEELLGCHNCGMTF 84
Query: 69 NSRSSQQIHQRIHTGERPYSCRYCYKAFAD 98
+ I + + C CYK F
Sbjct: 85 ----KEFIQSGL------FGCAECYKTFES 104
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication,
recombination, and repair].
Length = 482
Score = 28.6 bits (64), Expect = 4.8
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 182 VPTAPRKYKRRRKLLPHEGDGFPDTD-------DDEEASASKSAPADG-TDTKPSASLLQ 233
P P +Y + + + PD+D ++ A + Q
Sbjct: 385 APIPPERYNKVDPYIIRKCLILPDSDMSLQYFTYYCDSYEKLILKAVLDKLEEIIEISSQ 444
Query: 234 PPRKPT 239
R PT
Sbjct: 445 YSRPPT 450
>gnl|CDD|128804 smart00531, TFIIE, Transcription initiation factor IIE.
Length = 147
Score = 27.7 bits (62), Expect = 4.9
Identities = 12/57 (21%), Positives = 14/57 (24%), Gaps = 10/57 (17%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCML 158
L T Y CP C + + TF C CG L
Sbjct: 87 LEDKLEDETNNAYYKCPNCQSKYTFLEANQ----------LLDMDGTFTCPRCGEEL 133
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 27.4 bits (61), Expect = 7.3
Identities = 15/55 (27%), Positives = 20/55 (36%)
Query: 176 TAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASASKSAPADGTDTKPSAS 230
T + T K K + KL E D D EE + D++ SAS
Sbjct: 57 TTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESAS 111
>gnl|CDD|188725 cd09339, LIM4_Paxillin_like, The fourth LIM domain of the
Paxillin-like protein family. The fourth LIM domain of
the Paxillin like protein family: This family consists
of paxillin, leupaxin, Hic-5 (ARA55), and other related
proteins. There are four LIM domains in the C-terminal
of the proteins and leucine-rich LD-motifs in the
N-terminal region. Members of this family are adaptor
proteins to recruit key components of
signal-transduction machinery to specific sub-cellular
locations. Paxillin is found at the interface between
the plasma membrane and the actin cytoskeleton. Paxillin
serves as a platform for the recruitment of numerous
regulatory and structural proteins that together control
the dynamic changes in cell adhesion, cytoskeletal
reorganization and gene expression that are necessary
for cell migration and survival. Leupaxin is a
cytoskeleton adaptor protein, which is preferentially
expressed in hematopoietic cells. It associates with
focal adhesion kinases PYK2 and pp125FAK and identified
to be a component of the osteoclast pososomal signaling
complex. Hic-5 controls cell proliferation, migration
and senescence by functioning as coactivator for steroid
receptors such as androgen receptor, glucocorticoid
receptor and progesterone receptor. LIM domains are
50-60 amino acids in size and share two characteristic
zinc finger motifs. The two zinc fingers contain eight
conserved residues, mostly cysteines and histidines,
which coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein complexes.
Length = 52
Score = 25.4 bits (56), Expect = 8.0
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
C CGK R + ++ H + C +C K GT ++ +KPY
Sbjct: 1 CAGCGKPITGRCITAMGRKFHPEH--FVCAFCLKQL-SKGTFKEQ-----DDKPY 47
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 24.5 bits (54), Expect = 8.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 114 PYVCPICSKAFNQRVVLREHIR 135
+ C C K F L H++
Sbjct: 1 QFYCVACDKYFKSENALENHLK 22
>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and
modification].
Length = 470
Score = 27.7 bits (61), Expect = 8.6
Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 9/120 (7%)
Query: 117 CPICSKAFNQRVVLREHI--RAHH---SGPESKGATTFECKVCGCMLSSSPELCQHLVQH 171
C C + F++ V H+ + H G E + + L + LV
Sbjct: 241 CVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLR 300
Query: 172 SDENTAKNRV--VPTAPRKYKRRR-KLLPHEGDGFPDTD-DDEEASASKSAPADGTDTKP 227
S TAK R + R+ K+ K EG D + DE S G D P
Sbjct: 301 SLAITAKERKAEISLLSRRKKQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLP 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.419
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,575,385
Number of extensions: 1311611
Number of successful extensions: 1510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 65
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)