RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17050
(295 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 128 bits (325), Expect = 8e-37
Identities = 55/153 (35%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C +CG+ + L H+ R + C +CGK+F+ + HQR H
Sbjct: 24 CPECGKSFSRSDHLAEHQ-----------RTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
TGE+PY C C K+F+ LR H+R HTGEKPY CP C K+F+Q LR H R H
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH---- 128
Query: 142 ESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
G ++C CG S L H H+ E
Sbjct: 129 --TGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 125 bits (317), Expect = 1e-35
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C +CG+ + D++ L H+ R + C +CGK+F+ R++ + HQR H
Sbjct: 52 CPECGKSFSDKKDLTRHQ-----------RTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGP 141
TGE+PY+C C K+F+ LR H+R HTGEKPY CP C K+F++ L H R H
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH---- 156
Query: 142 ESKGATTFECKVCGCMLSSSPELCQH 167
G ++C CG S L H
Sbjct: 157 --TGEKPYKCPECGKSFSRRDALNVH 180
Score = 123 bits (311), Expect = 1e-34
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C +CG+ + R +L H+ R + C +CGK+F+ + + HQR H
Sbjct: 80 CPECGKSFSQRANLRAHQ-----------RTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE+PY C C K+F+ L H+R HTGEKPY CP C K+F++R L H R H
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 108 bits (273), Expect = 5e-29
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 67 TFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQ 126
+ SS + GE+PY+C C K+F+ L +H+R HTGEKPY CP C K+F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 127 RVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
+ L H R H G ++C CG S L H H+ E
Sbjct: 62 KKDLTRHQRTH------TGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Score = 96.4 bits (241), Expect = 2e-24
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C +CG+ + L H+ R + C +CGK+F+ + HQR H
Sbjct: 108 CPECGKSFSQLAHLRAHQ-----------RTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
TGE+PY C C K+F+ L H+R HTG+K
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 119 bits (301), Expect = 1e-34
Identities = 35/77 (45%), Positives = 45/77 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPIC 120
C CGK+F S+ H IH+ RPY C+YC K F ++KH +HTGEKP+ C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 121 SKAFNQRVVLREHIRAH 137
KAF+Q L H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 87.9 bits (219), Expect = 2e-22
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 25 SHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQ 78
S C+ CG+ + +L H I +PC CGK F+ +S + H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-----------LIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKHERVHTG 111
IHTGE+P+ C+ C KAF+ L H R HTG
Sbjct: 50 FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 75.5 bits (187), Expect = 7e-18
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGA 146
+ C+ C K+F TL H +H+ +PY C C K F+Q+ +++H H G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH------TGE 55
Query: 147 TTFECKVCGCMLSSSPELCQH 167
+C+VCG S S L H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITH 76
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 119 bits (300), Expect = 3e-34
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPIC 120
C CGK F+ + + H R HTG +PY C+ C A AD +L KH R+H+ E+P+ C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 121 SKAFNQRVVLREHIRAH 137
A L H+R+H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 102 bits (258), Expect = 5e-28
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
H CE CG+ + + L H R G + + C C SS H RIH+ E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM------RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
RP+ C+ C A + L H R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 91.3 bits (228), Expect = 1e-23
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG 140
P+ C C K F+ L+ H R HTG KPY C C A L +H+R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--- 59
Query: 141 PESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
F+C++C +S +L HL H+ +
Sbjct: 60 ---SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 118 bits (299), Expect = 8e-34
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHER---VHTGEKPY 115
C C K F S+ ++H R HTGE+P+ C C K + L +HE ++ E+ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 116 VCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQH 167
C +C + F +R+ LR H+ +H G ++C C +L H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSH------TGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 113 bits (285), Expect = 1e-31
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQR-- 79
C C +++ + L VH R F C CGK + + + H+
Sbjct: 10 CPTCHKKFLSKYYLKVHN-----------RKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Query: 80 -IHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
++ E+ ++C C + F LR H HTGE PY C CS+ F Q+ L+ H+ H
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 139 SGPES 143
SGP S
Sbjct: 119 SGPSS 123
Score = 93.7 bits (234), Expect = 4e-24
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH--H 138
+G C C+K F L+ H R HTGEKP+ CP C K + ++ L EH + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 139 SG--PESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
F C VC EL H+V H+ E
Sbjct: 62 RSEQV-------FTCSVCQETFRRRMELRLHMVSHTGE 92
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 117 bits (296), Expect = 2e-33
Identities = 34/79 (43%), Positives = 42/79 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
F C CG+ F + IH+R HT ERPY+C C+KAF LR H +H+ EKP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 119 ICSKAFNQRVVLREHIRAH 137
C K F Q L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 103 bits (259), Expect = 5e-28
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 72 SSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLR 131
S + ++ + C++C + F L HER HT E+PY C IC KAF ++ LR
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 132 EHIRAHHSG--PESKGATTFECKVCGCMLSSSPELCQH 167
+H HS P F+C+ CG S L H
Sbjct: 63 DHRYI-HSKEKP-------FKCQECGKGFCQSRTLAVH 92
Score = 102 bits (258), Expect = 6e-28
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C+ CG + +LL+H+ R + C C K F + + H+ IH
Sbjct: 20 CKFCGRHFTKSYNLLIHE-----------RTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+ E+P+ C+ C K F TL H+ +H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 114 bits (289), Expect = 2e-32
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
+PC CGK+F +S + H +H G RPY C C K F L H ++HTG KPY C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 119 ICSKAFNQRVVLREHIRAHHSG--PESKGATTFECKVCG 155
IC+K F R H+ S +E
Sbjct: 70 ICAKRFMWRDSFHRHV---TSCTKS-------YEAAKAE 98
Score = 104 bits (263), Expect = 1e-28
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
C+ CG+ + + H G R + C CGK F + H +IHTG +P
Sbjct: 13 CQ-CGKSFTHKSQRDRHM------SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQR 127
Y C C K F + H V + K Y + +
Sbjct: 66 YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104
Score = 90.6 bits (226), Expect = 3e-23
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
+G++ Y C+ C K+F +H +H G +PY C +C K F + L H++ H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH- 60
Query: 139 SGPESKGATTFECKVCGCMLSSSPELCQH 167
G +EC +C +H
Sbjct: 61 -----TGIKPYECNICAKRFMWRDSFHRH 84
Score = 65.5 bits (161), Expect = 8e-14
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 19/82 (23%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI------FPCHDCGKTFNSRSSQQIHQRIH 81
C CG+++ + L+ H +I + C+ C K F R S H+ +
Sbjct: 40 CGVCGKKFKMKHHLVGHM-----------KIHTGIKPYECNICAKRFMWRDS--FHRHVT 86
Query: 82 TGERPYSCRYCYKAFADGGTLR 103
+ + Y + +
Sbjct: 87 SCTKSYEAAKAEQNTTEASGPS 108
Score = 54.0 bits (131), Expect = 1e-09
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 106 ERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELC 165
+G+K Y C C K+F + H+ H G + C VCG L
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH------LGLRPYGCGVCGKKFKMKHHLV 54
Query: 166 QHLVQHSDE 174
H+ H+
Sbjct: 55 GHMKIHTGI 63
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 115 bits (289), Expect = 6e-32
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDV----IRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTG 83
+ C + L+ H V C GK+F ++ H R+HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 84 ERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
E+P+ C + C K FA L+ H+R HTGEKP+ C C + F ++H+ H
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 99.7 bits (249), Expect = 5e-26
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 24/158 (15%)
Query: 30 DCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYS- 88
G + L K E P C +TF++ H + P
Sbjct: 2 SSGSSGQPIKQELSCKWID-----EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56
Query: 89 --------CRYCYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAHH 138
C K+F L H RVHTGEKP+ CP C K F + L+ H R H
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH- 115
Query: 139 SGPESKGATTFECKVCGCM--LSSSPELCQHLVQHSDE 174
G F+C+ GC ++S + +H+ H+ +
Sbjct: 116 -----TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 93.5 bits (233), Expect = 1e-23
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQQIHQRIHTGE 84
C G+ + + L+ H IR G + FPC CGK F + +IH+R HTGE
Sbjct: 65 CPREGKSFKAKYKLVNH------IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 85 RPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC 117
+P+ C + C + FA+ +KH VHT +K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 113 bits (286), Expect = 7e-32
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
+ C + + D ++ H T R+ C +CGK F S + HQ +HTGE+P+
Sbjct: 10 HKGCTKMFRDNSAMRKHL------HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 88 SCRY--CYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
C + C K F+ LR H R+HTG++PYVCP C+K F Q L+ HI H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 106 bits (266), Expect = 8e-29
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 60 PCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
P C K F S+ + H H G R + C C KAF + L++H+ VHTGEKP+ C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 120 --CSKAFNQRVVLREHIRAHHSGPESKGATTFECKV--CGCMLSSSPELCQHLVQHSDE 174
C K F+ LR H+R H G + C C + S L H++ H+
Sbjct: 68 EGCGKRFSLDFNLRTHVRIH------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 88.7 bits (221), Expect = 3e-22
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQQIHQRIHT 82
H+C +CG+ + + L H+ G + F C CGK F+ + + H RIHT
Sbjct: 35 HVCAECGKAFVESSKLKRHQ------LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 88
Query: 83 GERPYSCRY--CYKAFADGGTLRKHERVHTGEKPY 115
G+RPY C + C K FA L+ H H K
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 42.9 bits (102), Expect = 1e-05
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV 169
+ CP C+K F +R+H+ H G C CG S +L +H +
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-------GPRVHVCAECGKAFVESSKLKRHQL 55
Query: 170 QHSDE 174
H+ E
Sbjct: 56 VHTGE 60
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 112 bits (283), Expect = 1e-31
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE--KPYV 116
C CGK F H+ H+GE+PYSC C F + H R H G KPY+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 117 CPICSKAFNQRVVLREHIRAHHSGPES 143
C C K F++ L HI+ HSGP S
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 93.7 bits (234), Expect = 1e-24
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG 140
+G +C C K F D L +H+ H+GEKPY CP+C F ++ + H+R+ H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG 60
Query: 141 PESKGATTFECKVCGCMLSSSPELCQHL 168
K + C+ CG S L H+
Sbjct: 61 SVGK---PYICQSCGKGFSRPDHLNGHI 85
Score = 49.4 bits (119), Expect = 4e-08
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRT-ERGRIFPCHDCGKTFNSRSSQQIH-QRIHTGER 85
C CG + + + H H G+ + C CGK F+ H +++H+G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSH----DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 111 bits (281), Expect = 2e-31
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 59 FPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYV 116
+ C C + F+ S H RIHTG++P+ CR C + F+ L H R HTGEKP+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 117 CPICSKAFNQRVVLREHIRAH 137
C IC + F + + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 84.4 bits (210), Expect = 5e-21
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 27 MCEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
E C + SL H R G + F C C + F+ H R HTGE+
Sbjct: 8 PVESCDRRFSQSGSLTRHI------RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEK 113
P++C C + FA ++H ++H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 112 bits (282), Expect = 2e-30
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 62 HDCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC-- 117
DCG +N Q H HTGE+P+ C+ C K F L +H HTGEK + C
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 118 PICSKAFNQRVVLREHIRAHHSGPESKGATTFECKV--CGCMLSSSPELCQHLVQHSDE 174
C F + +++H H+ + C CG +L H H+ +
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICV----YVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Score = 101 bits (255), Expect = 1e-26
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 29 EDCGEEYWDRQSLLVHKARHDVIRT-ERGRIFPCH--DCGKTFNSRSSQQIHQRIHTGER 85
+ C + + ++ H R + ++ CH +CGK F + ++HQ HT +
Sbjct: 78 DGCDLRFTTKANMKKHFNRF----HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 86 PYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
PY C C K F+ L++HE+VH G CS + +H+ H
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 91.9 bits (229), Expect = 1e-22
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 77 HQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC--PICSKAFNQRVVLRE 132
+ + + Y C + C A+ L+ H HTGEKP+ C C K F L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 133 HIRAHHSGPESKGATTFECKVCGC 156
H H G F C GC
Sbjct: 63 HSLTH------TGEKNFTCDSDGC 80
Score = 59.9 bits (146), Expect = 5e-11
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQQIHQRIHTG- 83
E+CG+ + L VH+ + + C C K F+ S + H+++H G
Sbjct: 109 FENCGKAFKKHNQLKVHQ------FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 84 --ERPYSCRYCYKAFADGGTLRKHERVHT 110
++ SC + K + L+ H
Sbjct: 163 PCKKDDSCSFVGKTWTL--YLKHVAECHQ 189
Score = 56.1 bits (136), Expect = 1e-09
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 104 KHERVHTGEKPYVC--PICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGC 156
+ + K Y+C C A+N+ L+ H+ H G F CK GC
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH------TGEKPFPCKEEGC 50
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 110 bits (277), Expect = 3e-30
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCG-----KTFNSRSSQQIHQRIHT 82
+ C +E+ ++ L+ H + I ER + F CH G + F ++ +H R HT
Sbjct: 6 WDGCSQEFDSQEQLVHH-INSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 83 GERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC--PICSKAFNQRVVLREHIRAHH 138
GE+P+ C + C K+++ L+ H R HTGEKPY+C CSKAF+ +H H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 139 SG--PESKGATTFECKVCGC 156
S P + CK+ GC
Sbjct: 124 SNEKP-------YVCKLPGC 136
Score = 108 bits (273), Expect = 2e-29
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 26 HMCEDCGEEYWDRQ-----SLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQQIH 77
+C G R L+VH +R G + C C K+++ + + H
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVH------MRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 78 QRIHTGERPYSCRY--CYKAFADGGTLRKH-ERVHTGEKPYVCPI--CSKAFNQRVVLRE 132
R HTGE+PY C + C KAF++ KH R H+ EKPYVC + C+K + LR+
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 133 HIRAHH 138
H++ H
Sbjct: 149 HVKTVH 154
Score = 99.2 bits (248), Expect = 7e-26
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 59 FPCHDCGKTFNSRSSQQIH---QRIHTGERPYSCRYC-----YKAFADGGTLRKHERVHT 110
C + F+S+ H + IH + + C + + F L H R HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 111 GEKPYVCPI--CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGC 156
GEKP+ C C K++++ L+ H+R+H G + C+ GC
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH------TGEKPYMCEHEGC 105
Score = 68.8 bits (169), Expect = 2e-14
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 84 ERPYSCRYCYKAFADGGTLRKH---ERVHTGEKPYVC-----PICSKAFNQRVVLREHIR 135
E C + F L H E +H K +VC + F + +L H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 136 AHHSGPESKGATTFECKVCGC 156
H G +C GC
Sbjct: 61 RH------TGEKPHKCTFEGC 75
Score = 68.4 bits (168), Expect = 2e-14
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DCGKTFNSRSSQQIHQ-RIHTGERPYSCRY--CYKAFADGGTLRKHERVHTG 111
C K F++ S + HQ R H+ E+PY C+ C K + D +LRKH + G
Sbjct: 104 GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 46.4 bits (111), Expect = 1e-06
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQ-HLVQ 170
E CS+ F+ + L HI + H E K F C GC P Q LV
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERK---EFVCHWGGCSRELRPFKAQYMLVV 57
Query: 171 H 171
H
Sbjct: 58 H 58
Score = 34.5 bits (80), Expect = 0.016
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTG 83
C K + SS + H + G
Sbjct: 133 LPGCTKRYTDPSSLRKHVKTVHG 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 108 bits (272), Expect = 8e-30
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 63 DCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC--PIC 120
DC + F+ + HQR HTG +P+ C+ C + F+ L+ H R HTGEKP+ C P C
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102
Query: 121 SKAFNQRVVLREHIRAH 137
K F + L H H
Sbjct: 103 QKKFARSDELVRHHNMH 119
Score = 80.3 bits (199), Expect = 4e-19
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 82 TGERPYSC--RYCYKAFADGGTLRKHERVHTGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
+ +RP+ C C K + L+ H R HTGEKPY C C + F++ L+ H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 138 HSGPESKGATTFECKVCGCMLSSSPELCQH 167
G F+CK C S S L H
Sbjct: 62 ------TGVKPFQCKTCQRKFSRSDHLKTH 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 103 bits (260), Expect = 2e-28
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
F C C + F+ H R HTGE+P++C C + FA ++H + P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 119 ICSKAFNQRVVLREHIRAH--HSG 140
+ ++ L + G
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVG 86
Score = 82.2 bits (204), Expect = 3e-20
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESK 144
+P+ CR C + F+ L H R HTGEKP+ C IC + F + + H H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP--- 58
Query: 145 GATTFECKVCGCMLSSSPELCQH 167
+LS + L
Sbjct: 59 ----ILEDKVEELLSKNYHLENE 77
Score = 70.6 bits (174), Expect = 6e-16
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCHDCGKTFNSRSSQQIHQRIHTGERP 86
C C + L H RT G + F C CG+ F ++ H+ I P
Sbjct: 6 CRICMRNFSRSDHLTTHI------RTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 87 YSCRYCYKAFADGGTLRKHE---RVHTGEK 113
+ + L + GE+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 103 bits (260), Expect = 2e-28
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 52 RTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVH 109
+ CGKT+ S + H R HTGE+PY C + C FA L +H R H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG +P+ C C +AF++ L H++ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 67.6 bits (166), Expect = 9e-15
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQ-QIHQRIHTG 83
CG+ Y L H RT G + + C CG F +RS + H R HTG
Sbjct: 10 YAGCGKTYTKSSHLKAHL------RTHTGEKPYHCDWDGCGWKF-ARSDELTRHYRKHTG 62
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVH 109
RP+ C+ C +AF+ L H + H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 100 bits (253), Expect = 1e-27
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 72 SSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLR 131
H + ++PY C C +F G L H+ VHTGEKPY C IC FN+ L+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 132 EHIRAH 137
H R H
Sbjct: 63 THTRIH 68
Score = 93.3 bits (233), Expect = 1e-24
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
C C +F + + H+ +HTGE+PY C C F L+ H R+H+GEKPY
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 101 bits (253), Expect = 2e-27
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 75 QIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE--KPYVCPICSKAFNQRVVLRE 132
R H+GE+PY C C+ F GT++ H E + CP C ++ L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 133 HIRAHHSG 140
H+R HS
Sbjct: 64 HLRKQHSY 71
Score = 78.7 bits (195), Expect = 5e-19
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE--RPYSCRYCYKAFADGGTLRKHER-VHTGEKPY 115
+ C+ C F + ++H E + C +C A L H R H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 72.6 bits (179), Expect = 7e-17
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 100 GTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLS 159
G+ R H+GEKPY C IC F Q ++ HI H+ +K F C C +++
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK----FHCPHCDTVIA 56
Query: 160 SSPELCQHL 168
+L HL
Sbjct: 57 RKSDLGVHL 65
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQR-IHTGERP 86
C C + ++ +H + TE F C C +S +H R H+ P
Sbjct: 18 CYICHARFTQSGTMKMHILQKH---TENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Query: 87 YS 88
S
Sbjct: 75 SS 76
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 100 bits (252), Expect = 4e-27
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 53 TERGRIFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERV 108
E+ RI C C K + S + H R HTGE+PY C + C FA L +H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 109 HTGEKPYVCPICSKAFNQRVVLREHIRAHHS 139
HTG KP+ C +C+++F++ L H++ H +
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 75.4 bits (186), Expect = 1e-17
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 67 TFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC--PICSKAF 124
+ S +RIH + P C K + L+ H R HTGEKPY C C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 125 NQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSD 173
+ L H R H GA F+C VC S S L H+ +H +
Sbjct: 58 ARSDELTRHYRKH------TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 66.1 bits (162), Expect = 3e-14
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 26 HMCE--DCGEEYWDRQSLLVHKARHDVIRTERG-RIFPCH--DCGKTFNSRSSQ-QIHQR 79
H C+ C + Y L H RT G + + C C F +RS + H R
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHL------RTHTGEKPYKCTWEGCDWRF-ARSDELTRHYR 68
Query: 80 IHTGERPYSCRYCYKAFADGGTLRKHERVHT 110
HTG +P+ C C ++F+ L H + H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 44.9 bits (107), Expect = 2e-06
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 95 AFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVC 154
+ G + R+H + P C+K + + L+ H+R H G ++C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH------TGEKPYKCTWE 51
Query: 155 GCM--LSSSPELCQHLVQHSDE 174
GC + S EL +H +H+
Sbjct: 52 GCDWRFARSDELTRHYRKHTGA 73
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 99.1 bits (248), Expect = 8e-27
Identities = 30/68 (44%), Positives = 33/68 (48%)
Query: 70 SRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVV 129
S S + R Y C C K+F+ L KH R HTGEKPY C C KAF QR
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 130 LREHIRAH 137
L H R H
Sbjct: 62 LIGHHRVH 69
Score = 93.3 bits (233), Expect = 1e-24
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
C +CGK+F+ S H+R HTGE+PY C C KAF L H RVHTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 98.0 bits (245), Expect = 3e-26
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE----RPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
+ C C KTF + +H + + + C C K F T+ +H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 115 YVCPICSKAF 124
+
Sbjct: 76 VEGENSGPSS 85
Score = 95.3 bits (238), Expect = 3e-25
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 75 QIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE----KPYVCPICSKAFNQRVVL 130
R HTGE+PY+C +C K F L H + + +VC C K F +R +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 131 REHIRAHHSGPESKGATTFECKVCG 155
H G E + G
Sbjct: 64 ARHADNC------AGPDGVEGENSG 82
Score = 71.0 bits (175), Expect = 3e-16
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 100 GTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLS 159
G+ R HTGEKPY C C K F Q+ +L H + +H + F C CG +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--PNFVPAAFVCSKCGKTFT 58
Query: 160 SSPELCQH 167
+ +H
Sbjct: 59 RRNTMARH 66
Score = 36.7 bits (86), Expect = 7e-04
Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 33/79 (41%)
Query: 18 GPPASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIH 77
P PA+ +C CG+ + R ++ H
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMAR---------------------------------H 66
Query: 78 QRIHTGERPYSCRYCYKAF 96
G +
Sbjct: 67 ADNCAGPDGVEGENSGPSS 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 96.8 bits (242), Expect = 5e-26
Identities = 32/61 (52%), Positives = 38/61 (62%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRA 136
IH+GE+PY C C KAF+ L +H+RVHTGEKPY C C KAF+Q L H R
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 137 H 137
H
Sbjct: 65 H 65
Score = 92.9 bits (232), Expect = 2e-24
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
C +CGK F+ S HQR+HTGE+PY C C KAF+ L H+R+HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 64.4 bits (158), Expect = 8e-14
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSS 161
+H+GEKPY C C KAF++ +L +H R H G ++C CG S +
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH------TGEKPYKCLECGKAFSQN 55
Query: 162 PELCQHLVQHSDE 174
L H H+
Sbjct: 56 SGLINHQRIHTSG 68
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 96.5 bits (241), Expect = 8e-26
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 59 FPC--HDCGKTFNSRSSQQIHQRI-HTGERPYSC--RYCYKAFADGGTLRKHERVHTGEK 113
PC CG+ F++R H++ H ++ +SC C K+F L++H ++H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 114 PYVCPICSKAF 124
Y+C +
Sbjct: 68 DYICEFSGPSS 78
Score = 79.1 bits (196), Expect = 3e-19
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 81 HTGERPYSCRY--CYKAFADGGTLRKHERV-HTGEKPYVCP--ICSKAFNQRVVLREHIR 135
+G C + C + F++ L H++ H +K + CP C K+FN + L+EH++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 136 AHHSGPESKGATTFECKVCGC 156
H + C+ G
Sbjct: 62 LH------SDTRDYICEFSGP 76
Score = 61.4 bits (150), Expect = 1e-12
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRI-------FPC--HDCGKTFNSRSSQQIHQ 78
CG + +RQ L HK + F C CGK+FN + + H
Sbjct: 12 FPGCGRIFSNRQYLNHHK-----------KYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 79 RIHTGERPYSCRYCYKAF 96
++H+ R Y C + +
Sbjct: 61 KLHSDTRDYICEFSGPSS 78
Score = 50.6 bits (122), Expect = 7e-09
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 109 HTGEKPYVCPI--CSKAFNQRVVLREHIRAHHSG--PESKGATTFECKVCGC--MLSSSP 162
+G C C + F+ R L H + H F C C +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-------FSCPEPACGKSFNFKK 54
Query: 163 ELCQHLVQHSDE 174
L +H+ HSD
Sbjct: 55 HLKEHMKLHSDT 66
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 93.4 bits (233), Expect = 1e-24
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 78 QRIHTGERPYSCRYCYKAFADGGTLRKHERV--HTGEKPYVCPICSKAFNQRVVLREHIR 135
+ GE Y C+ C + + +H K Y CP C K F ++ + H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 136 AHH 138
H
Sbjct: 62 IIH 64
Score = 69.9 bits (172), Expect = 7e-16
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 52 RTERG-RIFPCHDCGKTFNSRSSQQIHQRI--HTGERPYSCRYCYKAFADGGTLRKHERV 108
T+ G + C C + + S+ H + Y C +C+K F + H ++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 109 HTG 111
Sbjct: 63 IHK 65
Score = 59.5 bits (145), Expect = 3e-12
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 106 ERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELC 165
E GE Y C +CS+ + H H + + C C + +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH----KRNVKVYPCPFCFKEFTRKDNMT 57
Query: 166 QHLVQH 171
H+
Sbjct: 58 AHVKII 63
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 93.8 bits (234), Expect = 1e-24
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEK 113
++ CH +CGK F + ++HQ HT + PY C + C K F+ L++HE+VH G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 114 PYVCPICSKAFNQRVVLREHIRAHH 138
CS + +H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 86.0 bits (214), Expect = 7e-22
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCP 118
C +C + +S+++ +IH+RIH +RP+ C YC L KH + G+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 85.2 bits (212), Expect = 1e-21
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
+ P C C + + LR HER+H ++P+ C CS Q L +H++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 81.7 bits (202), Expect = 3e-20
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHT---GEKPYVCPICSKAFNQRVVLREHIRAH 137
+G C C +L H+R H + C C K F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 138 HSGPESK 144
H
Sbjct: 62 HPALLLA 68
Score = 69.4 bits (170), Expect = 1e-15
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHT---GERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
C CG T ++S HQR H + C +C K F ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 116 VCPICSK 122
S
Sbjct: 68 APQESSG 74
Score = 57.8 bits (140), Expect = 3e-11
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 109 HTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHL 168
+G C IC Q+ L H R H E+ A F C+ CG + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH---AETVAALRFPCEFCGKRFEKPDSVAAHR 58
Query: 169 VQHSDENTAKNRVVP 183
+ +
Sbjct: 59 SKSHPALLLAPQESS 73
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
CE CG + SL H+ +H FPC CGK F S H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAA--LRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 86 PYSCR 90
+ +
Sbjct: 66 LLAPQ 70
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 77.1 bits (191), Expect = 9e-19
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHE-RVHTGEK 113
F C C + F + + H R HT E+PY C C +AF L +H ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 76.4 bits (189), Expect = 2e-18
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG 140
R + C C +AFA L++H R HT EKPY C +C++AF +R +L H + HSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 76.0 bits (188), Expect = 2e-18
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGERPY C C KAF D L KH+++HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK F RS+ HQ+IHTGE+P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE+PY+C +C KAF R L +H + H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.6 bits (187), Expect = 2e-18
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF+ +L +H+RVH+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C C K F+ +S HQR+H+GE+P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +C KAF+ L +H R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.6 bits (187), Expect = 3e-18
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF+ +L H+R+H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK F+ R S +HQRIH+G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +C KAF+ R L H R H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 75.3 bits (186), Expect = 4e-18
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG++P+ C +C K+F G L H+R+HTGEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C CGK+F ++ + HQRIHTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG+KP+ C C K+F + L H R H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.3 bits (186), Expect = 4e-18
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C C K F+ L H+R HTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 5e-11
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGKTF+ +S HQR HTGE+P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPY C C K F+Q+ +L H R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 75.2 bits (186), Expect = 4e-18
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF L H+R HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 57.1 bits (139), Expect = 1e-11
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++C K FN++S+ +HQR HTGE S
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAFN + L H R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.9 bits (185), Expect = 5e-18
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF D L H+++HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F RS+ HQ+IHTGE+P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF R L H + H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 74.5 bits (184), Expect = 6e-18
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY+C+ C K+F L KH+RVH+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 55.3 bits (134), Expect = 9e-11
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK+F S HQR+H+GE+P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K+F L +H R H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.9 bits (185), Expect = 6e-18
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K+F L H+++HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK+F +S +HQ+IHTGE+P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C IC K+F ++ L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY+C C KAF L++H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F S Q HQRIHTGE+P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF L+EH R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K + L H++VHTGE+P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 57.9 bits (141), Expect = 9e-12
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK +NS+ + +HQ++HTGERP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K +N + L H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG +PY C C KAF+ L +H+RVHTGEKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F+ S HQR+HTGE+P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG KPY C C KAF+Q L H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF+ +L H+ +HTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 56.4 bits (137), Expect = 3e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C+ CGK F+ RSS HQ IHTG++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF+ R L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C YC KAF L +H+R+HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCR 90
C CGK F + HQRIHTGE+P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPYVC C KAF L H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 74.5 bits (184), Expect = 7e-18
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C K+F+ L H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK+F+ S HQRIHTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C K+F+ L H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 8e-18
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAFA L +H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F +++ HQRIHTGE+P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF Q+ L +H R H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 74.4 bits (184), Expect = 8e-18
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG +PY C C KAF L H R HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.3 bits (137), Expect = 3e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S+S IH R HTGE S
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG KPYVC C KAF + L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 8e-18
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF L KH+++HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F RS+ HQ+IHT ++P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY+C C KAF R L +H + H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 9e-18
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGER Y C C KAF TL H+R+H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F +S+ +HQRIH GE+P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE+ Y C C KAF Q+ L H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.2 bits (183), Expect = 9e-18
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF D + +H+R+HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 55.7 bits (135), Expect = 7e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F SS HQR+HTG+RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF +H R H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF L H++ HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.7 bits (138), Expect = 3e-11
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C DCGK F +S IHQ+ HTGER
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF ++ L H ++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG + + C C KAF TL H+++HTGEKP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F +S+ +HQ+IHTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG K + C C KAF ++ L H + H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGER Y C C KAFA TL H+R+HTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F +S+ +HQRIHTGE+P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE+ Y C C KAF ++ L H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C KAF+D L +H R+HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C DCGK F+ H+RIHTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C KAF+ + L +H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+ Y+C+ C K+F+ L KHER+H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK+F+ H+R+H+GE+P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEK Y C C K+F++ L +H R H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG +PY C C KAF+ +L H+ +HTGEKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F+ SS HQ IHTGE+P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG KPY+C C KAF+ L H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-17
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C+ C KAF L +H++ HTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C C K F ++ HQ+ HTGE+P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +CSKAF Q+ L +H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-17
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF +L H+ H+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F +RSS IHQ H+GE+P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF R L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.7 bits (182), Expect = 1e-17
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L H VHTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F R H +HTGE+P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F R L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K+F LR H++ HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 56.4 bits (137), Expect = 3e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C DCGK+F +S +IHQ+ HTGER
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K+F + LR H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE PY C C KAF+ L H+R H GEKP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
CH+CGK F+ + HQR H GE+P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE PY C C KAF+++ L H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K+F L H+R+HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C DCGK+F +S +HQRIHTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K+F ++ L H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+P+ C C K F H+R H+GEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F + S HQR H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKP+ C C K F H R+H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C K F+ L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F+ RS+ +H ++HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C K F++R L H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C KAF L H+R HTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +C K FN++S+ +HQR HTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C KAFN + L H R H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C C K + L H+RVHTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK + R HQR+HTGE+
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPY C C K + +R+ L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ CR C K+F+ L H+R+HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK+F+ S +HQRIHTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 51.0 bits (123), Expect = 2e-09
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C K+F+ L H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE P+ C C K F L H+++HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 56.7 bits (138), Expect = 2e-11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F +++ IHQ+IHTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE P++C C K F + L H + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG+RPY C C KAF +L H R HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F ++SS H+R HTGE+P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG++PY C C KAF + L H R+H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF+ L +H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F+ S HQRIHTGE+P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF+Q L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C+K+F G +L H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C C K+F SS +HQRIHTGE+P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 1e-09
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +C K+F L H R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C K+F L +H VHT EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C CGK+F RS H +HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C IC K+F R L H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+P+ C C K F L H+RVHTGEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F S HQR+HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKP+ C C K F Q L H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C KAF L H+ +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F + S+ HQ IHTGE+P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K+F L +H R+HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK+F +S H+RIHTGE+P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY+C C K+F Q+ L H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+ E+PY C C K + L H+RVH GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C DCGK +N R + +HQR+H GE+
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+ EKPY C C K +N+R+ L H R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PYSC C KAF L +H RVHT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +C KAF L +H+R H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 53.7 bits (130), Expect = 4e-10
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C+ CGK F + H R+HT E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C+ C KAF+ L +H+RVHTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCR 90
C +CGK F+ + HQR+HTGE+P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C KAF+Q L +H R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 3e-17
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 76 IHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
GE+ Y C C K F+ L+ H+RVHTGEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK F+ S Q HQR+HTGE+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEK Y C +C K F+Q L+ H R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 72.6 bits (179), Expect = 4e-17
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG +PY C C K F+ L H+R HTG KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
+ C C KTF+ +S +HQR HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG KPY C C+K F+ + L H R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 5e-17
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L H+R+HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S HQRIHTG +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F Q L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 5e-17
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L +H+R+HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S HQRIHTGE+P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F L H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 6e-17
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
GE+PY C C KAF+ L H R H+GEKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F+S+S IH R H+GE+P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEKPY C C KAF+ + L H+R H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 6e-17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C+ C KAF L +H VH+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C CGK F S H +H+GERP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C +C KAF L +H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-17
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+P+ C C K F L H+RVHTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F S HQR+HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKP+ C C K F Q L H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 71.8 bits (177), Expect = 7e-17
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+ Y C C K F+ L +H+++HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F+ S HQ+IHTGE+P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEK Y C C K F++ L +H + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-17
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
G++ + C C K F +L H+R+HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 3e-11
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++C KTF SS +HQRIHTGE+P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
G+K + C C K F Q L H R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 72.2 bits (178), Expect = 7e-17
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHE-RVHTGEKPYVCPICSKAFNQ 126
+ +PY C+ C K F+ L H +VHT E+P+ C + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 59.5 bits (145), Expect = 3e-12
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 59 FPCHDCGKTFNSRSSQQIH-QRIHTGERPYSCRYCYKAFADG 99
+ C CGK F+ H +++HT ERP+ C+ + G
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 55.7 bits (135), Expect = 8e-11
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG--PESKGATTFECKVCG 155
+ KPY+C C K F++ L HI+ H+ P +C+V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-------HKCQVWV 48
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-17
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C C K++ L +H+RVHTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK++N R HQR+HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C K++NQRV L +H R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 8e-17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+P+ C+ C KAF L H R+HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CGK F H RIHTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKP+ C C KAF Q + L H+R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 8e-17
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TG++PY C C K F L +H +HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S H+ IHTGE+P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TG+KPY C C K F Q L H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 9e-17
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGERP+ C C K+F L +H+R+HTGEKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 46 ARHDVIRT-ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
T ER C++CGK+F + HQRIHTGE+P
Sbjct: 1 GSSGSSGTGERP--HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGE+P+ C C K+F Q L +H R H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.7 bits (177), Expect = 9e-17
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S H+ IHTGE+P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 51.3 bits (124), Expect = 2e-09
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F Q L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 9e-17
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L +H RVHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S H+R+HTG +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F Q L H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 1e-16
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C C KAF L +H R+HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F+ + H+RIHTG RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPY C C KAF++ L EH R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 1e-16
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 1e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S H+ IHTGE+P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F Q L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 73.3 bits (179), Expect = 1e-16
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 69 NSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRV 128
+S SS +++ I TG + C+ C A+ L H TG +R
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRW 60
Query: 129 VLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHS 172
+ +C CG S +L H+++
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 62.9 bits (152), Expect = 9e-13
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 10/106 (9%)
Query: 38 RQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRI-----HTGERPYSCRYC 92
S ++ + F C DC +++ +H +
Sbjct: 4 GSSGKLYGSIF-----TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPK 58
Query: 93 YKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHH 138
+ +L + E +K C C +F L H+
Sbjct: 59 RWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 49.0 bits (116), Expect = 9e-08
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 28 CEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPY 87
C+DC Y L VH R + + + + S + ++
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 88 SCRYCYKAFADGGTLRKH--ERVHTGEKPY 115
C YC +F L H + H +
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 1e-16
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+PY C C K F L +H+ +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 46 ARHDVIRT-ERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
T E+ + CH+CGK F S HQ IHTGE+P
Sbjct: 1 GSSGSSGTGEKP--YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 51.3 bits (124), Expect = 2e-09
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKPY C C K F + L H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 71.0 bits (175), Expect = 1e-16
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C C KAF L HER H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 55.2 bits (134), Expect = 7e-11
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F +S +H+R H G S
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPY C C KAF + +L H R H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 71.1 bits (175), Expect = 1e-16
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
GE+PY C C KAF+ G+L H RVHTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEKPY C C KAF+Q+ L HIR H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 53.0 bits (128), Expect = 6e-10
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYS 88
C CGK F+ + S +H R+HTG P S
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 71.0 bits (175), Expect = 1e-16
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
GE+ + CR C F+ +LR H+ VH GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +C F+ SS ++HQ +H GE+P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEK + C C F+Q LR H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-16
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PY C C K F L H R+HTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 6e-11
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F S H RIHTGE+P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKPY C C K F Q L H R H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 2e-16
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GERPY C C K F L +H + H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
+ C++CGK F S H + H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GE+PY C C K F + L EH++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 2e-16
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+G++PY C+ C K F G L +H+RVHTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +C KTF H+R+HTGER
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+G+KPY C C K F Q L +H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 69.8 bits (172), Expect = 3e-16
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
GE+PY C C F TL+ H R+HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEKPY C IC F L+ H+R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 51.3 bits (124), Expect = 2e-09
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+PC CG F + + H RIHTG P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 69.9 bits (172), Expect = 4e-16
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHER-VHTGEKPYVCP 118
TG++PY C C KAF +L +H R HTGEKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSG 140
TG+KPY C C KAF Q L H R +H+G
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 49.9 bits (120), Expect = 7e-09
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 61 CHDCGKTFNSRSSQQIHQR-IHTGERPYSC 89
C +CGK F +S H R HTGE+P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.4 bits (173), Expect = 5e-16
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 RSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRV 128
+ + RPY+C C + F+ L +H R+HTG+KP+ C IC + F++
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 129 VLREHIRAH 137
L HIR H
Sbjct: 64 HLTTHIRTH 72
Score = 56.9 bits (138), Expect = 4e-11
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 59 FPCH--DCGKTFNSRSSQ-QIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHT 110
+ C C + F SRS + H RIHTG++P+ CR C + F+ L H R HT
Sbjct: 20 YACPVESCDRRF-SRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 69.5 bits (171), Expect = 6e-16
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
G PY C C K+F+ L H+R+HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C C K+F+ + +HQR+HT E+P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
G PY C C K+F+ ++ L H R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.2 bits (170), Expect = 7e-16
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P+ C+ C F+ +L KH R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP+ C C F+ L +H+R+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 50.7 bits (122), Expect = 4e-09
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C +CG F+ S H R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.4 bits (168), Expect = 1e-15
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P C C KAF L H+R H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 55.3 bits (134), Expect = 8e-11
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F +S +HQR H ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
TGEKP C C KAF + L H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
GER + C C K F +H R+HTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C DCGK F S+ H+RIHTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GE+ + C C K F Q +H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GERP+ C C K F L H R+H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C++CGK F RS H R+H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GE+P+ C C K F +R L H+R H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-15
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
GE+PY C C K+F+ L +H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 55.2 bits (134), Expect = 8e-11
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK+F+ H HT E+P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEKPY C C K+F+ L +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 67.9 bits (167), Expect = 2e-15
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
GE+PY C C F LR H +HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GEKPY C C F Q LR H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 50.2 bits (121), Expect = 4e-09
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYS 88
C CG F + + H IHTG P S
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+ ++C C K F LR H+RVH GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F S+ +IHQR+H GE+
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 50.7 bits (122), Expect = 4e-09
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH----HSGPES 143
+GEK + C C K F LR H R H SGP S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 66.0 bits (162), Expect = 8e-15
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 78 QRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE PY C C KAF L H+R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 56.0 bits (136), Expect = 4e-11
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK FN + HQR H GE S
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 106 ERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GE PY C C KAFN++ L H R H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.4 bits (163), Expect = 8e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
TGE PY C C K F+ L H++ H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 55.2 bits (134), Expect = 9e-11
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C +CGK F+ + HQ+ H+G+ S
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 49.0 bits (118), Expect = 1e-08
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
TGE PY C C K F+++ L H + H SGP S
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 66.4 bits (163), Expect = 8e-15
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+ + + C C + F L +H+R+HTGEKP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
CH+CG+ F +S HQRIHTGE+P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+ K + C C + F + L +H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 64.1 bits (157), Expect = 5e-14
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
T + Y+C C KAF L +H+++HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
T K Y C C KAF + L H + H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
C++CGK F HQ+IHT + S
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 64.7 bits (158), Expect = 6e-14
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 71 RSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC--PICSKAFNQ 126
S Q + R + C + C K + L+ H R HTGEKP+ C C + F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 127 RVVLREHIRAH 137
L H R H
Sbjct: 62 SDELSRHRRTH 72
Score = 60.9 bits (148), Expect = 2e-12
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 52 RTERGRIFPCH--DCGKTFNSRSSQQIHQRIHTGERPYSCRY--CYKAFADGGTLRKHER 107
+ R R C CGKT+ S + H R HTGE+P+SC + C + FA L +H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 108 VH 109
H
Sbjct: 71 TH 72
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 78 QRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+P+ C C KAF+ L H++ H EKP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 56.8 bits (138), Expect = 2e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
F C C K F+S+S +HQ+ H E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 106 ERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+GEKP+ C C KAF+ + L H + H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 62.7 bits (153), Expect = 1e-13
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
GE PY C C K+F G+L H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 54.2 bits (131), Expect = 2e-10
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
+ C CGK+F R S +HQR + P S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 48.4 bits (116), Expect = 2e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GE PY+C C K+F QR L H R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 61.8 bits (151), Expect = 3e-13
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 78 QRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPY 115
+G+R Y C+ C K+F G+L HER+HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 54.9 bits (133), Expect = 9e-11
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYS 88
C +CGK+F + S +H+RIHTG P S
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 46.4 bits (111), Expect = 1e-07
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 106 ERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+G++ Y C C K+F Q+ L H R H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 61.7 bits (149), Expect = 6e-13
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
C +CG S + H R HT RPY C YC +F G L KH + K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 52.0 bits (124), Expect = 2e-09
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
Y C C L+KH R HT +PY C C+ +F + L +H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 38.2 bits (88), Expect = 1e-04
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 26 HMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
++CE+CG L H H +R + C C +F ++ + H + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-----YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.4 bits (86), Expect = 2e-04
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDE 174
Y+C C + +L++HIR H + C C + L +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH------TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 61.2 bits (149), Expect = 6e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 77 HQRIHTGERPYSCRY--CYKAFADGGTLRKHERVHTGEKPYVC 117
TGE+P++C + C F+ L +H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 43.1 bits (102), Expect = 2e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 105 HERVHTGEKPYVC--PICSKAFNQRVVLREHIRAH 137
TGEKP+ C P C F++ L H R+H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 40.7 bits (96), Expect = 1e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 59 FPCH--DCGKTFNSRSSQ-QIHQRIHTGERPYSC 89
F C CG F SRS + H+R H+G +P
Sbjct: 13 FACTWPGCGWRF-SRSDELSRHRRSHSGVKPSGP 45
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 59.3 bits (143), Expect = 6e-12
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 70 SRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVV 129
S S Q+IH G+R C C F + K +C C K Q
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 130 LREHIRAHHSGPESKGATT 148
L + SG ++ G ++
Sbjct: 55 LNKDEGN-ESGKKTSGPSS 72
Score = 53.9 bits (129), Expect = 5e-10
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 46 ARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKH 105
+ I R C CG F RS+ + + C C K L K
Sbjct: 7 GKRQKIHLGD-RSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 106 ERVHTGEKPY 115
E +G+K
Sbjct: 59 EGNESGKKTS 68
Score = 49.3 bits (117), Expect = 2e-08
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 100 GTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLS 159
G+ K +++H G++ C C F +R L T C+ C
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------------KTPMCEKCRKDSC 50
Query: 160 SSPELCQHLVQHSDENTA 177
L + S + T+
Sbjct: 51 QEAALNKDEGNESGKKTS 68
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 59.6 bits (144), Expect = 7e-12
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 59 FPCHDCGKTFNSRSSQQIH-QRIHTGERPYSCRYCY--------KAFADGGTLRKHERVH 109
P C +TF++ H H G + CY K+F L H RVH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 110 TGEKPYVC 117
TGEK
Sbjct: 86 TGEKSGPS 93
Score = 54.6 bits (131), Expect = 5e-10
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 23 PASHMCEDCGEEYWDRQSLLVHKARHDVIRTERG----RIFPCHDCGKTFNSRSSQQIHQ 78
S + C + L+ H V E+ C GK+F ++ H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 79 RIHTGERPYSC 89
R+HTGE+
Sbjct: 83 RVHTGEKSGPS 93
Score = 50.7 bits (121), Expect = 1e-08
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 80 IHTGERPYSCRYCYKAFADGGTLRKH-ERVHTGEKPYV--------CPICSKAFNQRVVL 130
I + + C + F+ L H H G CP K+F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 131 REHIRAH 137
HIR H
Sbjct: 79 VNHIRVH 85
Score = 40.7 bits (95), Expect = 4e-05
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 108 VHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT---FECKVCGCMLSSSPEL 164
+ + C + F+ L H+ H G + EC G + +L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 165 CQHLVQHSDE 174
H+ H+ E
Sbjct: 79 VNHIRVHTGE 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.4 bits (134), Expect = 8e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 79 RIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
+GE+PYSC C + F+D L +H+++HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 46.9 bits (112), Expect = 7e-08
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYSC 89
+ C +C +TF+ + HQ++HT + S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 44.2 bits (105), Expect = 7e-07
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 107 RVHTGEKPYVCPICSKAFNQRVVLREHIRAH--HSGPES 143
+GEKPY C C + F+ L +H + H SGP S
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 57.3 bits (137), Expect = 1e-10
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 68 FNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQR 127
SS + C C F+ +L++H R E VCP+C K F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Query: 128 VVLREHIRAHHSG 140
+H+ H+
Sbjct: 114 DSALDHVCKKHNI 126
Score = 46.9 bits (110), Expect = 6e-07
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 64 CGKTFNSRSSQQIHQRIHTGERPYSC----RYCYKAFADGGTLRKHERVHTGEKPYVCPI 119
++ HQ +R D + +VCP+
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 120 CSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQH 171
C F+ V L++HIR T C VC +S+ H+ +
Sbjct: 80 CLMPFSSSVSLKQHIRYTEH--------TKVCPVCKKEFTSTDSALDHVCKK 123
Score = 28.7 bits (63), Expect = 1.1
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSS 161
R H+ ++ + + N +++ SK + F C +C SSS
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKAISQFVCPLCLMPFSSS 87
Query: 162 PELCQHLVQHSDENTAKNRVVPTAPRKYKRRRKLLPH 198
L QH+ +V P +++ L H
Sbjct: 88 VSLKQHIRYTEHT-----KVCPVCKKEFTSTDSALDH 119
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 51.5 bits (123), Expect = 2e-09
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 78 QRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICS 121
+ +C C K F D L +H+ H+GEKPY S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 46.5 bits (110), Expect = 1e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYC 92
+ C CGK F H+ H+GE+PYS
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.007
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 107 RVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
K C IC K F L H +H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 51.4 bits (122), Expect = 1e-08
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYV 116
++ C C +S Q H+R+ C YC F ++HE K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLT 71
Query: 117 CPICSKAFNQRVVLREHIRAHHS 139
C C + F + H H+
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHN 94
Score = 46.8 bits (110), Expect = 4e-07
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPE 142
+ Y CR C + HER+ VCP CS F + +EH
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKK- 69
Query: 143 SKGATTFECKVCGCMLSSSPELCQHLVQHSDENT 176
C C SS + +H V+ ++N
Sbjct: 70 ------LTCLECMRTFKSSFSIWRHQVEVHNQNN 97
Score = 31.0 bits (69), Expect = 0.13
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Query: 99 GGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCML 158
G + ++ Y C +C+ + + H R C C
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRF 52
Query: 159 SSSPELCQHLVQHSDEN 175
S +H + +
Sbjct: 53 FSPELKQEHESKCEYKK 69
Score = 29.1 bits (64), Expect = 0.62
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 27 MCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQ 78
+C C ++ + H+++ + + C +C +TF S S HQ
Sbjct: 44 VCPYCSLRFFSPELKQEHESKCE------YKKLTCLECMRTFKSSFSIWRHQ 89
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 48.6 bits (115), Expect = 2e-08
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+PY C +C + FAD G L++H R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.6 bits (63), Expect = 0.20
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
+ + C C + F + Q H RIHTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.6 bits (63), Expect = 0.22
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
KPYVC C + F L+ H+R H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.9 bits (114), Expect = 4e-08
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKP 114
GE P+ C C + F L +HER H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 42.5 bits (100), Expect = 3e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 104 KHERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
GE P+ C C + F QR L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 37.9 bits (88), Expect = 1e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGERPYS 88
F C C + F R+ H+R H + S
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.8 bits (109), Expect = 2e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 105 HERVHTGEKPYVCPICSKAFNQRVVLREHIRAH 137
R TG KP+ CP C ++F++ L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 43.9 bits (104), Expect = 8e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVH 109
R TG +P+ C C ++F+ L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.5 bits (59), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 59 FPCHDCGKTFNSRSSQ-QIHQRIH 81
F C DC ++F SRS +H++ H
Sbjct: 12 FQCPDCDRSF-SRSDHLALHRKRH 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 41.7 bits (97), Expect = 2e-05
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKH-ERVHTG---EKPYVCPICSKAFNQRVVLRE 132
+Q+ E Y C+YC D H + H YVC C+ + L E
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 133 HIRAHHSGPES 143
H +H G E+
Sbjct: 69 HNLKYHPGEEN 79
Score = 40.5 bits (94), Expect = 7e-05
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSS 161
+++ E Y C C+ + H+ + H P +++ C C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH--PNVVLNSSYVCVECNFLTKRY 63
Query: 162 PELCQH-LVQHSDENTAKNRVV 182
L +H L H E K +V
Sbjct: 64 DALSEHNLKYHPGEENFKLTMV 85
Score = 28.6 bits (63), Expect = 0.92
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 25 SHMCEDCGEEYWDRQSLLVH-KARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQ-RIHT 82
+ C+ C + D H + H + + C +C + H + H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS--YVCVECNFLTKRYDALSEHNLKYHP 75
Query: 83 GERPYSCR 90
GE +
Sbjct: 76 GEENFKLT 83
Score = 25.9 bits (56), Expect = 7.5
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 133 HIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLV-QHSDENTAKNRVVPTAPRKYKR 191
H HH+ K +ECK C H+ +H + + V KR
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 192 RRKLLPHEGDGFPDTDD 208
L H P ++
Sbjct: 63 YDALSEHNLKYHPGEEN 79
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 37.7 bits (88), Expect = 1e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
R + C C +AFA L++H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.1 bits (76), Expect = 0.004
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
R F C C + F + + H R HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.5 bits (72), Expect = 0.018
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
+ +VC +C++AF ++ L+ H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 9e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 51 IRTERGRIFPCH--DCGKTFNSRSSQQIHQRIHTGER 85
+ + + CH CGK + S + H R HTGER
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 82 TGERPYSCRY--CYKAFADGGTLRKHERVHTGEK 113
++ + C C K + LR H R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.5 bits (64), Expect = 0.28
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 110 TGEKPYVCPI--CSKAFNQRVVLREHIRAH 137
+K ++C I C K + + LR H+R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.9 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 85 RPYSCRY--CYKAFADGGTLRKHERVHTGEK 113
RP+ C + C K F L++H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.6 bits (75), Expect = 0.007
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 59 FPCH--DCGKTFNSRSSQ-QIHQRIHTGER 85
F C CGK F +RS + Q H+R HTGE+
Sbjct: 3 FMCTWSYCGKRF-TRSDELQRHKRTHTGEK 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.1 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHT 110
+G+RP+ CR C AF +H +VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 33.2 bits (75), Expect = 0.005
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 109 HTGEKPYVCPICSKAFNQRVVLREHIRAH 137
+G++P+VC IC AF + H++ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.9 bits (79), Expect = 0.002
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 109 HTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
+GEKPY CP+C F ++ + H+R+H G ++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
Score = 29.9 bits (66), Expect = 0.12
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHTG 111
+GE+PYSC C F + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 64/383 (16%), Positives = 101/383 (26%), Gaps = 163/383 (42%)
Query: 3 FHKPTASAARPAASKGPPASPASHMCEDCG-----EEYWDR-QSL------LVHKARHDV 50
F K + SA A +G + + G ++Y++ + L LV D+
Sbjct: 137 FDKKSNSALFRAVGEG-----NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG----DL 187
Query: 51 IRTERGRIFPC----HDCGKTFNSRSSQQIHQRIHTGER----------PYSC------- 89
I+ + D K F I + + P SC
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 90 --RYCYKAFADG---GTLRKHERVHTGEKPYVCPICSKA---------------F--NQR 127
Y A G G LR + + TG S+ F + R
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATG--------HSQGLVTAVAIAETDSWESFFVSVR 297
Query: 128 VVLRE--HI--RAHHSGPESKGATTF--ECKVCG-----CMLS----SSPEL-------C 165
+ I R + + P + + + MLS + ++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 166 QHLVQHSD-----ENTAKNRVVPTAP-----------RKYK------------RRRKL-- 195
HL N AKN VV + P RK K RKL
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 196 ----LP-----H-------EGDGFPDTDDDEEASASKS------APADGTDTKPSASLLQ 233
LP H D + + +K DG+D + + +
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 234 PP------RKPTPEYDREFLEWE 250
R P ++WE
Sbjct: 477 ERIVDCIIRLP--------VKWE 491
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.3 bits (88), Expect = 0.003
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 107 RVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
+ Y C +CS + L H+ +H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 37.5 bits (86), Expect = 0.005
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 4 HKPTASAARPAASKGPPASPASHMCEDCG-------EEYWDRQSLLVHKARHDVIRT--- 53
K + + + S + ++ + G + S +V K V
Sbjct: 116 SKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTA 175
Query: 54 ERGRIFPCHDCGKTFNSRSSQQIHQRIH 81
G + CH C S H H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 0.21
Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 5/178 (2%)
Query: 5 KPTASAARPAASKGPPASPASHMCEDCGEEYWDRQ--SLLVHKARHDVIRTERGRIFPCH 62
+ A PA ++ ++ + + L K + ++G
Sbjct: 32 DKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDL 91
Query: 63 DCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGT--LRKHERVHTGEKPYVCPIC 120
+ + + Q+ + Y L + V P+
Sbjct: 92 VNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMS 151
Query: 121 SKAFNQRVVLREHIRAHH-SGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDENTA 177
++ + A P + ++C VC +L S +L H+ H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 36.7 bits (84), Expect = 0.006
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 45 KARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRK 104
+A D+ E R++ D K +S S + IH+ + GE+ + + LR
Sbjct: 167 RACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRG 226
Query: 105 HERVHTGEK 113
+ +
Sbjct: 227 PIHLSVLRQ 235
Score = 34.0 bits (77), Expect = 0.035
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 78 QRIHTGER---PYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHI 134
+ I GE YS Y K H + GEK + + LR I
Sbjct: 170 RDIRPGEWLRVWYSEDYM-KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
Query: 135 RAHHS 139
Sbjct: 229 HLSVL 233
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.9 bits (74), Expect = 0.008
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 56 GRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
G+IF C C K F + S Q H RIHT E+
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 32.1 bits (72), Expect = 0.013
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 87 YSCRYCYKAFADGGTLRKHERVHTGEK 113
++C YC K F +L+ H R+HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.8 bits (53), Expect = 4.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
K + C C+K F + L+ H+R H
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIH 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 32.5 bits (74), Expect = 0.008
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAHHSG 140
K Y C +C++AF +R +L H + HSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (72), Expect = 0.016
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 55 RGRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
R + C +CG+ F S HQ +H G++
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 30.6 bits (68), Expect = 0.057
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+ E+ + CR C + F +L +H+ +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 0.51
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATT 148
+ EK + C C + F Q V L EH + H G ++ G ++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH-QVLHMGQKNSGPSS 45
Score = 25.5 bits (55), Expect = 3.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 25 SHMCEDCGEEYWDRQSLLVHKARH 48
SH C +CGE ++ SL+ H+ H
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLH 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.047
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 81 HTGERPYSCRYCYKAFADGGTLRKHERVHT 110
E+ + C C K F+ L +HER+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.3 bits (62), Expect = 0.40
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 109 HTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
EK + C C K F+ L +H R H G +S
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 26.3 bits (57), Expect = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHT 82
F C+ C KTF+ H+RIHT
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.055
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 28/93 (30%)
Query: 7 TASAARPAASKGPPASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGK 66
T + A + P C +C +V R G + C CG
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPK----IVE-------RFSEGDVV-CALCGL 50
Query: 67 TFNSRSSQQIHQRIHTG-ERPYSCRYCYKAFAD 98
+ + + T E ++ F++
Sbjct: 51 VLSDK-------LVDTRSE--------WRTFSN 68
Score = 29.6 bits (66), Expect = 0.96
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 18/53 (33%)
Query: 116 VCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLS-----SSPE 163
CP C K + ++V R S+G C +CG +LS + E
Sbjct: 23 TCPEC-KVYPPKIVER----------FSEGDVV--CALCGLVLSDKLVDTRSE 62
Score = 29.2 bits (65), Expect = 1.3
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 15/54 (27%)
Query: 89 CRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPE 142
C C + ER G+ VC +C +VL + + + E
Sbjct: 24 CPEC-----KVYPPKIVERFSEGD--VVCALCG------LVLSDKLV--DTRSE 62
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 30.0 bits (67), Expect = 0.056
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 58 IFPCH--DCGKTFNSRSSQQIHQRIHTG 83
++ CH +CG++FN R H++IHTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 24.2 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 87 YSCRY--CYKAFADGGTLRKHERVHTG 111
Y C + C ++F D L +H+++HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 30.3 bits (67), Expect = 0.066
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 59 FPCHDCGKTFNSRSSQQIHQRIHTGE 84
C +CGK F S HQ +H GE
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
Score = 28.7 bits (63), Expect = 0.26
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+ C+ C K F L +H+ +H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 26.8 bits (58), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 139 SGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDEN 175
SG TT EC+ CG + S L +H H+ E+
Sbjct: 3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGES 39
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 30.2 bits (67), Expect = 0.068
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAHHSGPE 142
+G YVC +C K F + LR HIR H +
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 31.4 bits (70), Expect = 0.074
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 140 GPESKGATTFECKVCGCMLSSSPELCQHLVQHSDENTAKNRVVPTAPRKYKRRRKLL 196
+T++CK C L S+ EL HL H++E + ++ +RR++LL
Sbjct: 17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKR-------AKRQERRKQLL 66
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.10
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTG 111
RPYSC C K F+ + H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 0.44
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 57 RIFPCHDCGKTFNSRSSQQIHQRIHTG 83
R + C CGK F+ + + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 0.89
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
+PY C +C K F+ + + H R H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 33.2 bits (75), Expect = 0.12
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 5 KPTASAARPAASKGPP-ASPASHMCEDCGEEYWDRQSLLVHKAR 47
KP A + P + K P +P+S++C C + +L H
Sbjct: 95 KPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
Score = 32.9 bits (74), Expect = 0.13
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFE 150
YVC +C+ F+ L EH+R+ H S T
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM 152
Score = 30.9 bits (69), Expect = 0.61
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 18/75 (24%)
Query: 5 KPTASAARPAASKGPPASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDC 64
+PT+ + A+ PA+ S V + C+ C
Sbjct: 81 RPTSDSIAAVANATKPAAVVSD------------------PQSMKVTPIVNPSSYVCNVC 122
Query: 65 GKTFNSRSSQQIHQR 79
F++ S+ H R
Sbjct: 123 NARFSTMSALSEHLR 137
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.13
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 57 RIFPC--HDCGKTFNSRSSQQIHQRIHTGER 85
+ F C C KTF R + + H + H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.3 bits (63), Expect = 0.32
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 112 EKPYVCPI--CSKAFNQRVVLREHIRAH 137
+K + C C+K F +R +R HI+ H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 25.6 bits (56), Expect = 3.9
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 84 ERPYSCRY--CYKAFADGGTLRKHERVHTGEK 113
++ + C + C K F +R H + H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.14
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 102 LRKH-ERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHS 139
L+KH E + C C K F + L H A HS
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.17
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 82 TGERPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+ +PY C C A A L H R HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 24.8 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 55 RGRIFPCHDCGKTFNSRSSQQIHQRIHTGER 85
G+ + C C +++ +H R HTGE+
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 24.0 bits (51), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 110 TGEKPYVCPICSKAFNQRVVLREHIRAH 137
+ KPY CP CS A + L H+R H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 31.3 bits (70), Expect = 0.17
Identities = 14/79 (17%), Positives = 22/79 (27%)
Query: 117 CPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDENT 176
CP+C + + KG C C + + E + Q
Sbjct: 5 CPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRA 64
Query: 177 AKNRVVPTAPRKYKRRRKL 195
+ N K R+KL
Sbjct: 65 SVNAETVAPEFIVKVRKKL 83
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.6 bits (63), Expect = 0.19
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
+P C C KAF +L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.32
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
KP C +C KAF Q L H+R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 26.3 bits (57), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 61 CHDCGKTFNSRSSQQIHQRIHTGER 85
C CGK F SS H R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 29.1 bits (64), Expect = 0.19
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAHH 138
+ Y CP+C K+F++ +++ HI+ +H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 29.6 bits (66), Expect = 0.28
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLRE---H 133
H+ R C++C + L++HE + G + +C C + V++++ H
Sbjct: 8 HEETECPLRLAVCQHCDLELSILK-LKEHED-YCGARTELCGNC----GRNVLVKDLKTH 61
Query: 134 IRAHHS 139
Sbjct: 62 PEVCGR 67
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 31.6 bits (72), Expect = 0.29
Identities = 17/92 (18%), Positives = 27/92 (29%)
Query: 157 MLSSSPELCQHLVQHSDENTAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASASK 216
M+ E + + + A + + ++ + P P +E A
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 217 SAPADGTDTKPSASLLQPPRKPTPEYDREFLE 248
T P SLL P Y E LE
Sbjct: 61 FVDTAVEGTLPPLSLLDPAEVKQKSYSPESLE 92
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.2 bits (63), Expect = 0.35
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 85 RPYSCRYCYKAFADGGTLRKHERVHTGEK 113
R Y+C +C + F L H VH ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 26.6 bits (59), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 57 RIFPCHDCGKTFNSRSSQQI--HQRIHTGER 85
R + C C + F RS+Q + H +H +R
Sbjct: 5 RSYTCSFCKREF--RSAQALGGHMNVHRRDR 33
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.7 bits (61), Expect = 0.41
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 113 KPYVCPICSKAFNQRVVLREHIRAH 137
KPYVC C K F Q L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 27.3 bits (60), Expect = 0.68
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 84 ERPYSCRY--CYKAFADGGTLRKHERVHT 110
+RPYSC + C KAF L +H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 24.2 bits (52), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 112 EKPYVC--PICSKAFNQRVVLREHIRAH 137
++PY C P C KAF + L H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 29.6 bits (65), Expect = 0.69
Identities = 22/91 (24%), Positives = 34/91 (37%)
Query: 186 PRKYKRRRKLLPHEGDGFPDTDDDEEASASKSAPADGTDTKPSASLLQPPRKPTPEYDRE 245
P + R ++ D P + +++ A+ +AP T TKP + P R + R
Sbjct: 33 PMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSKVKILRR 92
Query: 246 FLEWEMKVGINSMDKAASPVKTKTKVRFAAV 276
W VG + VRFA V
Sbjct: 93 ESYWFKNVGSVVAVDQDPKTRYPVVVRFAKV 123
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.4 bits (60), Expect = 0.83
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSGPES 143
+KPY C IC K + R L H H E
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEE 36
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.2 bits (64), Expect = 0.88
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 61 CHDCGKTFNSRSSQQIH--QRIHTG--ERPYSCRYCYKAFADGGTLRKHERVHTGE-KPY 115
C C S S + H R H R + + + GE +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 116 VCPICSKAFNQRVVLREHIR 135
CP+C+ F+ VV H
Sbjct: 95 CCPVCNMTFSSPVVAESHYI 114
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 27.8 bits (62), Expect = 0.96
Identities = 19/88 (21%), Positives = 22/88 (25%), Gaps = 24/88 (27%)
Query: 13 PAASKGPPASPASHMCEDCGEEYWDRQSLLV-----HKARHDVIRTERGRIFPCHDCGKT 67
+S P C C EE QSLL H + F C C
Sbjct: 3 SGSSGKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSC-----------FKCQTCSVI 51
Query: 68 FNSRSSQQIHQRIHTGERPYSCRYCYKA 95
+ PY C Y A
Sbjct: 52 LTGEYISK-------DGVPY-CESDYHA 71
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L
1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L*
1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L
1y77_L* ...
Length = 70
Score = 27.5 bits (61), Expect = 1.3
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 2 AFHKPTASAARPAASKGPPASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPC 61
F PT A A + + ++C +C + + +R D +R C
Sbjct: 5 GFQIPTNLDAAAAGTSQARTATLKYICAECSSK--------LSLSRTDAVR--------C 48
Query: 62 HDCG 65
DCG
Sbjct: 49 KDCG 52
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 28.5 bits (63), Expect = 1.4
Identities = 11/66 (16%), Positives = 14/66 (21%), Gaps = 13/66 (19%)
Query: 13 PAASKGPPAS---------PASHMCEDCGEEY----WDRQSLLVHKARHDVIRTERGRIF 59
G A A C +C E+ + K I
Sbjct: 49 EQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFL 108
Query: 60 PCHDCG 65
C CG
Sbjct: 109 ACPKCG 114
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 87 YSCRYCYKAFADGGTLRKHERVH 109
Y C C ++F + L +H+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 2.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 84 ERPYSCRYCYKAFADGGTLRKHERVHTGE 112
+ + C C K F GTL+ H+ +HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.8 bits (53), Expect = 5.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAH 137
K ++C +C K F + L+ H H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
Score = 24.4 bits (52), Expect = 8.6
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 53 TERGRIFPCHDCGKTFNSRSSQQIHQRIHTGE 84
+ + + C CGK F S+ + + H+ +HT +
Sbjct: 6 SGKTHL--CDMCGKKFKSKGTLKSHKLLHTAD 35
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 29.2 bits (65), Expect = 2.2
Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 30/85 (35%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAF-NQR-----------VVLREH 133
++C YC +H C K F N R +V +
Sbjct: 6 IHACSYC--------------GIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKC 51
Query: 134 --IRAHHSGPESKGATTFECKVCGC 156
+ H GP G T EC CGC
Sbjct: 52 KEVTLHKDGP--LGETVLECYNCGC 74
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A
{Shewanella oneidensis} SCOP: a.138.1.3
Length = 443
Score = 28.9 bits (63), Expect = 2.3
Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 14/128 (10%)
Query: 2 AFHKPTASAARPAASKGPPASPASHMCEDCGEEYWDR---------QSLLVHKARHDVIR 52
A + A +P C C S+ DV
Sbjct: 113 AGAGEPMAKLDLAKIAQNVGAPVRDNCGSCHFYGGGGDAVKHGDLDSSMAYPDKATDVHM 172
Query: 53 TERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGE 112
G F C +C T + S G C C+ +++++T
Sbjct: 173 DSDGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIGCENCH-----DSAPHSNKKLNTHT 227
Query: 113 KPYVCPIC 120
C C
Sbjct: 228 ATVACQTC 235
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.9 bits (61), Expect = 2.9
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 25 SHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTF---NSRSSQQIHQRIH 81
C +C + + K + D I +G +F C C K + + H
Sbjct: 104 RPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDT 163
Query: 82 TGERPYSCRYC 92
R + C C
Sbjct: 164 GWGREWICDSC 174
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 28.7 bits (64), Expect = 3.0
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 26/83 (31%)
Query: 86 PYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAF-NQR------VVLREHIRAHH 138
SC YC + + + C C K F N + ++ + +HH
Sbjct: 11 DNSCAYC--------------GIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHH 56
Query: 139 S----GPESK-GATTFECKVCGC 156
+ P+S G T EC CG
Sbjct: 57 NVVSLHPDSDLGDTVLECYNCGR 79
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative
splicing, antiviral defense, ATP- binding, hydrolase,
immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Length = 145
Score = 27.4 bits (60), Expect = 3.3
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREH 133
+ + CR C +R E H Y AF + V R H
Sbjct: 18 GSHMDKENKKLLCRKCKALACYTADVRVIEECH-----YTV--LGDAFKECFVSRPH 67
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Length = 131
Score = 27.3 bits (60), Expect = 3.4
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 83 GERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREH 133
G++ C C +R + H ++ +AF +R + H
Sbjct: 4 GQKNLLCGKCKAYACSTDDIRIIKDSH-----HIV--LGEAFKERYTTKPH 47
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5;
innate immune receptor, RNA biniding, RLR, alternative
splicing, antiviral defense; 1.45A {Homo sapiens} PDB:
2rqb_A
Length = 133
Score = 27.3 bits (60), Expect = 3.5
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 77 HQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRA 136
H + + + C+ C G + E++H +V + F + ++RE+
Sbjct: 3 HYKNNPSLITFLCKNCSVLACSGEDIHVIEKMH-----HVN--MTPEFKELYIVRENKAL 55
Query: 137 HHSGPESKGATTFECKVCG 155
+ + CK CG
Sbjct: 56 QKKCADYQINGEIICK-CG 73
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 3.7
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 102 LRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHS 139
L+KH ++ + C C K ++ H+ A+H+
Sbjct: 51 LKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats,
protein binding; 3.10A {Saccharomyces cerevisiae}
Length = 647
Score = 28.2 bits (62), Expect = 3.8
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 12/94 (12%)
Query: 157 MLSSSPELCQHLVQH--SDENTAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASA 214
++ + +H S+E A+ R + A K P+ + +
Sbjct: 318 EIAHDERFLNGVTKHLGSNEREARERAMFIAKLLSGGHLKYESDFKINIPNVKFESNSD- 376
Query: 215 SKSAPADGTDTKPSASLLQPPRKPTPEYDREFLE 248
D L+ + ++ ++
Sbjct: 377 ---------DKIIDFQSLKREIVKRIVFLKDLMK 401
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.4 bits (60), Expect = 4.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 108 VHTGEKPYVCPIC 120
+H GE CPIC
Sbjct: 180 IHKGEDFEKCPIC 192
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding,
transmembrane, transcription; 2.00A {Escherichia coli}
SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Length = 194
Score = 27.6 bits (62), Expect = 4.5
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 175 NTAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASASKSA 218
NTAKN + RR + + + +
Sbjct: 83 NTAKNYL-----VAQGRRPPSSDVDAIEAENFESGGALKEISNP 121
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 25.6 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 87 YSCRYCYKAFADGGTLRKHERVH 109
C C K F D LR+HE H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral
RNA, RIG-I like receptors, antiviral ATP-binding,
helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB:
3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Length = 121
Score = 26.5 bits (58), Expect = 5.1
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 89 CRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREH 133
CR C +R E H Y AF + V R H
Sbjct: 8 CRKCKALACYTADVRVIEESH-----YTV--LGDAFKECFVSRPH 45
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like
helicases, viral RNA detection, LGP2/dsRNA complex,
ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB:
2w4r_A 2rqa_A
Length = 145
Score = 26.6 bits (58), Expect = 6.4
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 74 QQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRV-VLRE 132
+ Q+ C C A G LRK E H +V + F+ V R+
Sbjct: 1 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTH-----HVN--VNPNFSNYYNVSRD 53
Query: 133 HIRAHHSGPESKGATTFECKVCG 155
+ + + K C+ CG
Sbjct: 54 PVVINKVFKDWKPGGVISCRNCG 76
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.3 bits (61), Expect = 7.0
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 22 SPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFP-CHDCG 65
+ C C +Y R +++ R C
Sbjct: 135 NMFVEECAKCKTQY-VRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.1 bits (52), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 115 YVCPICSKAFNQRVVLREHIRAHHSGPESK 144
+ CP C K F + L +HI H E +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.9 bits (53), Expect = 8.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 112 EKPYVCPICSKAFNQRVVLREHIRAHHSG 140
E+P CPIC Q LR H+ H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRHFA 50
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.0 bits (60), Expect = 8.7
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 22 SPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFP-CHDCG 65
+ C C +Y R +++ R C
Sbjct: 135 NMFVEECAKCKTQY-VRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 24.9 bits (54), Expect = 9.9
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 57 RIFPC-HDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERV 108
+ PC + C SR H + +R C +C F+ G HE +
Sbjct: 15 NVIPCPNRCPMKL-SRRDLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEGM 65
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 24.8 bits (54), Expect = 9.9
Identities = 8/67 (11%), Positives = 14/67 (20%), Gaps = 8/67 (11%)
Query: 60 PCHDCGKTFNSRSSQQIHQRI--HTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVC 117
C C + + + H + C C K + +
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV------EGMVFCS 57
Query: 118 PICSKAF 124
C K
Sbjct: 58 VECKKRM 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.419
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,529,128
Number of extensions: 260690
Number of successful extensions: 1886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1609
Number of HSP's successfully gapped: 610
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)