Query psy17051
Match_columns 152
No_of_seqs 103 out of 374
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189|consensus 100.0 5.2E-37 1.1E-41 280.7 13.4 111 40-150 168-278 (829)
2 PF01496 V_ATPase_I: V-type AT 99.7 5.8E-18 1.3E-22 157.2 4.6 108 41-150 139-246 (759)
3 PRK05771 V-type ATP synthase s 96.5 0.0052 1.1E-07 56.8 6.2 89 44-150 144-232 (646)
4 COG1269 NtpI Archaeal/vacuolar 96.1 0.0026 5.6E-08 59.4 1.6 100 47-150 147-246 (660)
5 PF08793 2C_adapt: 2-cysteine 69.3 4.9 0.00011 24.1 2.2 28 81-116 9-36 (37)
6 PF09827 CRISPR_Cas2: CRISPR a 59.2 26 0.00056 23.3 4.6 46 97-142 4-55 (78)
7 COG0623 FabI Enoyl-[acyl-carri 56.9 20 0.00044 30.2 4.4 45 98-142 36-82 (259)
8 PF11430 EGL-1: Programmed cel 55.4 4.7 0.0001 21.4 0.3 17 105-121 2-18 (21)
9 PF07544 Med9: RNA polymerase 49.3 60 0.0013 22.4 5.2 46 104-150 31-76 (83)
10 PF14202 TnpW: Transposon-enco 43.8 36 0.00078 20.2 3.0 24 92-115 7-35 (37)
11 PF00679 EFG_C: Elongation fac 43.3 46 0.001 22.7 3.9 34 45-78 42-75 (89)
12 PF04312 DUF460: Protein of un 41.7 28 0.00062 26.8 2.8 35 105-139 87-123 (138)
13 TIGR01573 cas2 CRISPR-associat 41.3 69 0.0015 22.4 4.6 26 90-115 31-60 (95)
14 PTZ00301 uridine kinase; Provi 39.3 1E+02 0.0023 24.6 5.9 93 51-150 63-161 (210)
15 cd03713 EFG_mtEFG_C EFG_mtEFG_ 35.1 39 0.00084 22.3 2.4 32 46-77 39-70 (78)
16 PTZ00106 60S ribosomal protein 31.1 1.2E+02 0.0026 22.0 4.6 36 96-131 42-80 (108)
17 cd01852 AIG1 AIG1 (avrRpt2-ind 28.7 93 0.002 23.8 3.9 86 59-145 72-182 (196)
18 smart00838 EFG_C Elongation fa 27.2 64 0.0014 21.6 2.5 33 46-78 41-73 (85)
19 PRK04335 cell division protein 26.9 2.8E+02 0.006 24.2 6.8 89 58-147 210-309 (313)
20 PF04914 DltD_C: DltD C-termin 26.4 66 0.0014 24.2 2.6 66 52-126 30-97 (130)
21 PF13443 HTH_26: Cro/C1-type H 26.2 32 0.00069 21.5 0.7 18 107-124 40-57 (63)
22 cd04097 mtEFG1_C mtEFG1_C: C-t 25.7 90 0.002 20.6 3.0 32 46-77 39-70 (78)
23 PF12290 DUF3802: Protein of u 25.0 2.4E+02 0.0053 21.0 5.3 40 104-150 41-81 (113)
24 PRK03427 cell division protein 25.0 2.5E+02 0.0054 24.7 6.2 90 57-147 230-330 (333)
25 PF09278 MerR-DNA-bind: MerR, 24.3 70 0.0015 20.1 2.1 42 108-149 18-59 (65)
26 COG2433 Uncharacterized conser 24.1 38 0.00083 32.1 1.1 23 104-126 298-320 (652)
27 PF10369 ALS_ss_C: Small subun 23.4 54 0.0012 22.1 1.5 23 103-125 12-34 (75)
28 cd01562 Thr-dehyd Threonine de 23.3 1.8E+02 0.0039 23.8 4.9 42 97-139 91-132 (304)
29 PRK00269 zipA cell division pr 22.5 3.7E+02 0.0081 23.2 6.7 86 59-145 188-284 (293)
30 PF07085 DRTGG: DRTGG domain; 22.4 1.7E+02 0.0036 20.3 4.0 71 62-136 33-103 (105)
31 PRK06683 hypothetical protein; 21.2 1.5E+02 0.0032 20.4 3.4 25 102-126 37-61 (82)
32 PF07859 Abhydrolase_3: alpha/ 21.2 61 0.0013 24.5 1.6 48 98-151 1-58 (211)
33 COG0572 Udk Uridine kinase [Nu 20.8 3.1E+02 0.0067 22.6 5.7 87 56-150 69-162 (218)
34 cd01514 Elongation_Factor_C El 20.5 92 0.002 20.4 2.2 33 45-77 39-71 (79)
35 PF02826 2-Hacid_dh_C: D-isome 20.3 59 0.0013 24.9 1.3 36 93-130 36-71 (178)
No 1
>KOG2189|consensus
Probab=100.00 E-value=5.2e-37 Score=280.73 Aligned_cols=111 Identities=59% Similarity=0.997 Sum_probs=106.6
Q ss_pred CCCcccceeeeeeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCC
Q psy17051 40 GVPHFNRFVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRA 119 (152)
Q Consensus 40 ~~~~~l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a 119 (152)
....+++||||||+++|..+|||||||+||||+|+++.+||+|+.||+|||+++|+||||||||+++++||+||||||||
T Consensus 168 ~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~a 247 (829)
T KOG2189|consen 168 FDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFGA 247 (829)
T ss_pred CCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEeecHHHHHHHHHHHhccCc
Confidence 33346669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 120 TLYPCPEAPTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 120 ~iy~~p~~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
++||||+++++|++++.+++.||+||+.||.
T Consensus 248 ~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~ 278 (829)
T KOG2189|consen 248 TLYPCPESPEERKEMLLEVNTRISDLQTVLD 278 (829)
T ss_pred EeecCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999985
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=99.71 E-value=5.8e-18 Score=157.19 Aligned_cols=108 Identities=38% Similarity=0.592 Sum_probs=70.6
Q ss_pred CCcccceeeeeeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCCc
Q psy17051 41 VPHFNRFVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRAT 120 (152)
Q Consensus 41 ~~~~l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a~ 120 (152)
+..+++|++|+|++++..+|+|+|||++|||+|+++.+++++..|+. +.+.|+||+|+++|+...+||+|||+++|++
T Consensus 139 ~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~--e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~ 216 (759)
T PF01496_consen 139 KFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPK--EEVEKEVFVVFFSGKELEEKVKKILRSFGFE 216 (759)
T ss_dssp -------------HHHHHHHHHHHHHHHTT-----S------EEEE---EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--
T ss_pred cceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeeccccccc--ceeeeeeEEEEEEchhhHHHHHHHhhccCce
Confidence 44556689999999999999999999999999999999999888875 7788999999999999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 121 LYPCPEAPTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 121 iy~~p~~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
.|++|+....+.+.+++++++|+|++.+++
T Consensus 217 ~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~ 246 (759)
T PF01496_consen 217 RYDLPEDEGTPEEAIKELEEEIEELEKELE 246 (759)
T ss_dssp B----GGGGG-HHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999877888999999999999998765
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=96.55 E-value=0.0052 Score=56.84 Aligned_cols=89 Identities=7% Similarity=0.060 Sum_probs=61.4
Q ss_pred ccceeeeeeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCCceec
Q psy17051 44 FNRFVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYP 123 (152)
Q Consensus 44 ~l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a~iy~ 123 (152)
.+....|+|+.+.... + ...-...++... ....+.+|+|++......+++.+||+++++..++
T Consensus 144 ~~~~~~G~i~~~~~~~---~--~~~~~~~~~~~~------------~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~ 206 (646)
T PRK05771 144 YVSVFVGTVPEDKLEE---L--KLESDVENVEYI------------STDKGYVYVVVVVLKELSDEVEEELKKLGFERLE 206 (646)
T ss_pred cEEEEEEEecchhhhh---H--HhhccCceEEEE------------EecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEec
Confidence 5668899999877544 1 111111121111 1225667777777778889999999999999999
Q ss_pred CCCChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 124 CPEAPTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 124 ~p~~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
+|+ .....+.+++++++++++++.++
T Consensus 207 ~p~-~~~p~~~l~~l~~~l~~l~~~~~ 232 (646)
T PRK05771 207 LEE-EGTPSELIREIKEELEEIEKERE 232 (646)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 987 45556778888888888776654
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=96.11 E-value=0.0026 Score=59.39 Aligned_cols=100 Identities=21% Similarity=0.175 Sum_probs=78.1
Q ss_pred eeeeeeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCCceecCCC
Q psy17051 47 FVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 47 ~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
+..+.+...+...-..-+||..++++++...+.....+ ++...+.+++|+.++.....++.+++++.+.++++.|+
T Consensus 147 ~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~v~~ 222 (660)
T COG1269 147 FDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALY----GENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPE 222 (660)
T ss_pred hhhHhhcccceEEEEeeeehhhhhhHHHhhcccccchh----hhccccceEEEEEecccchHHHHHHHHhCCcEEeeccc
Confidence 66666777777777777788998888877666543321 15567999999999999999999999999999999997
Q ss_pred ChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 127 APTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 127 ~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
......+.+.+++.+++|.+..++
T Consensus 223 ~~~~~~~~~~~~~~~i~~~~~~~~ 246 (660)
T COG1269 223 FDGGPSELISELEEVIAEIQDELE 246 (660)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHH
Confidence 665566777788888777776654
No 5
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=69.26 E-value=4.9 Score=24.10 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=23.2
Q ss_pred CcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHh
Q psy17051 81 TPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEG 116 (152)
Q Consensus 81 ~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICds 116 (152)
+|..+|.||..+.+ |..+..++.|.|++
T Consensus 9 np~~NP~Tgr~Ik~--------~gp~y~~l~~~C~~ 36 (37)
T PF08793_consen 9 NPTVNPITGRKIKP--------GGPTYKKLVKECGG 36 (37)
T ss_pred CCCCCCCCCCcCCC--------CChHHHHHHHHcCC
Confidence 34578999988765 78999999999985
No 6
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=59.17 E-value=26 Score=23.27 Aligned_cols=46 Identities=11% Similarity=0.348 Sum_probs=27.9
Q ss_pred EEEEE--echhHHHHHHHHHHhcCC----ceecCCCChHHHHHHHHHHHhHH
Q psy17051 97 FIIFF--QGDQLKTRVMKICEGFRA----TLYPCPEAPTDRREMSMGVTTRI 142 (152)
Q Consensus 97 FiVff--~G~~l~~KI~KICdsf~a----~iy~~p~~~~~r~~~l~eL~~~i 142 (152)
++|.| ..+..+.|+.|++.++|. ++|.+.-+..+......++...+
T Consensus 4 ~lv~YDi~~~k~~~kv~k~L~~~g~~iQ~SVf~~~~~~~~~~~l~~~l~~~i 55 (78)
T PF09827_consen 4 YLVAYDISDNKRRNKVRKILKSYGTRIQYSVFEGNLTNAELRKLRRELEKLI 55 (78)
T ss_dssp EEEEEEEHSHHHHHHHHHHHHHTTEEEETTEEEEEE-HHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCccccceEEEEEcCHHHHHHHHHHHHhhC
Confidence 45555 456778888888888873 24555545555555555555544
No 7
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=56.89 E-value=20 Score=30.25 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=31.5
Q ss_pred EEEEechhHHHHHHHHHHhcCC-ceecCCCCh-HHHHHHHHHHHhHH
Q psy17051 98 IIFFQGDQLKTRVMKICEGFRA-TLYPCPEAP-TDRREMSMGVTTRI 142 (152)
Q Consensus 98 iVff~G~~l~~KI~KICdsf~a-~iy~~p~~~-~~r~~~l~eL~~~i 142 (152)
++-|+|+.+..||+++.+.++. -+|||+=+. +.-.....++..+.
T Consensus 36 ~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~ 82 (259)
T COG0623 36 AFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW 82 (259)
T ss_pred EEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence 4557999999999999999976 568998443 33334444444443
No 8
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=55.41 E-value=4.7 Score=21.41 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHhcCCce
Q psy17051 105 QLKTRVMKICEGFRATL 121 (152)
Q Consensus 105 ~l~~KI~KICdsf~a~i 121 (152)
.|+.|+-+.||.|.+.+
T Consensus 2 ~IG~kla~MCDdFD~em 18 (21)
T PF11430_consen 2 EIGTKLAAMCDDFDAEM 18 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 47899999999998764
No 9
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.29 E-value=60 Score=22.37 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhcCCceecCCCChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 104 DQLKTRVMKICEGFRATLYPCPEAPTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 104 ~~l~~KI~KICdsf~a~iy~~p~~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
..|+.|+.+.-... ..+=.+..+.+++...+++|..++.-.+.+|+
T Consensus 31 ~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~ 76 (83)
T PF07544_consen 31 GSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQ 76 (83)
T ss_pred HHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888988876654 22333667889999999999999999888875
No 10
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=43.82 E-value=36 Score=20.24 Aligned_cols=24 Identities=4% Similarity=0.384 Sum_probs=18.1
Q ss_pred ceeEEEEEEEe-----chhHHHHHHHHHH
Q psy17051 92 VYKSVFIIFFQ-----GDQLKTRVMKICE 115 (152)
Q Consensus 92 v~K~VFiVff~-----G~~l~~KI~KICd 115 (152)
+.+++|+|-.+ .+.+..|++|+|.
T Consensus 7 IG~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 7 IGKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred ECCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 45777776542 3899999999986
No 11
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=43.27 E-value=46 Score=22.65 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=28.9
Q ss_pred cceeeeeeeCCChhHHHHHHHHhhcCcEEEEeee
Q psy17051 45 NRFVAGVALRERMPAFERMLWRACRGNVFLRQAE 78 (152)
Q Consensus 45 l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~ 78 (152)
...|.|.|+..+..-|..-|-.+|+|.+.+...-
T Consensus 42 ~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~ 75 (89)
T PF00679_consen 42 RVVIEAEIPVRELFGFRSELRSLTSGRASFSMEF 75 (89)
T ss_dssp EEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEE
T ss_pred heeEEEEEChhhhhhHHHHhhccCCCEEEEEEEE
Confidence 4589999999999999999999999998766543
No 12
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=41.75 E-value=28 Score=26.80 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCCceecCCCC--hHHHHHHHHHHH
Q psy17051 105 QLKTRVMKICEGFRATLYPCPEA--PTDRREMSMGVT 139 (152)
Q Consensus 105 ~l~~KI~KICdsf~a~iy~~p~~--~~~r~~~l~eL~ 139 (152)
..=.-|+||..+|+|.+|....+ .++......+..
T Consensus 87 p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 87 PPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred CCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 34466899999999999977653 334434444433
No 13
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=41.35 E-value=69 Score=22.38 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=14.6
Q ss_pred CCceeEEEEEEEec---h-hHHHHHHHHHH
Q psy17051 90 DPVYKSVFIIFFQG---D-QLKTRVMKICE 115 (152)
Q Consensus 90 e~v~K~VFiVff~G---~-~l~~KI~KICd 115 (152)
..++++||...... . .+..+|.++.+
T Consensus 31 ~rvQ~SVf~~~~~~~~~~~~l~~~l~~~i~ 60 (95)
T TIGR01573 31 QRVQYSVFEGILEPNQLARKLIERLKRIIP 60 (95)
T ss_pred hheeccEEEEEcCHHHHHHHHHHHHHHhCC
Confidence 55666666666643 2 34555555554
No 14
>PTZ00301 uridine kinase; Provisional
Probab=39.30 E-value=1e+02 Score=24.62 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=51.3
Q ss_pred eeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCcee-----EEEEEEEechhHHHHHHHHHHhcCCcee-cC
Q psy17051 51 VALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYK-----SVFIIFFQGDQLKTRVMKICEGFRATLY-PC 124 (152)
Q Consensus 51 vI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K-----~VFiVff~G~~l~~KI~KICdsf~a~iy-~~ 124 (152)
....-+...|.+.|-++-+|.. +.-|.+|-.++....+ ..=||++-|=.+... .++++-|+.++| ++
T Consensus 63 ~p~a~D~~~l~~~l~~L~~g~~------i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~-~~l~~l~D~~ifvd~ 135 (210)
T PTZ00301 63 HPKSLEHDLLTTHLRELKSGKT------VQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN-AELRNEMDCLIFVDT 135 (210)
T ss_pred ChhhhCHHHHHHHHHHHHcCCc------ccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC-HHHHHhCCEEEEEeC
Confidence 3444567778999988888742 2233344332221111 113677788666322 478888999999 77
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 125 PEAPTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 125 p~~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
|.+..-.+.....+..+=.+.+.|++
T Consensus 136 ~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 136 PLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred ChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 76544333444454433334444443
No 15
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=35.12 E-value=39 Score=22.25 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=29.3
Q ss_pred ceeeeeeeCCChhHHHHHHHHhhcCcEEEEee
Q psy17051 46 RFVAGVALRERMPAFERMLWRACRGNVFLRQA 77 (152)
Q Consensus 46 ~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~ 77 (152)
..|.|.|+..+..-|..-|-..|+|++.+...
T Consensus 39 ~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~ 70 (78)
T cd03713 39 KVIKAEVPLAEMFGYSTDLRSLTQGRGSFTME 70 (78)
T ss_pred EEEEEEcCHHHHhChHHHHHhhcCCeEEEEEE
Confidence 48999999999999999999999999987655
No 16
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=31.07 E-value=1.2e+02 Score=22.02 Aligned_cols=36 Identities=3% Similarity=-0.051 Sum_probs=27.6
Q ss_pred EEEEEEe---chhHHHHHHHHHHhcCCceecCCCChHHH
Q psy17051 96 VFIIFFQ---GDQLKTRVMKICEGFRATLYPCPEAPTDR 131 (152)
Q Consensus 96 VFiVff~---G~~l~~KI~KICdsf~a~iy~~p~~~~~r 131 (152)
+.+|+.. ++....++...|.-.+..++.++.+.++.
T Consensus 42 aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eL 80 (108)
T PTZ00106 42 AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDL 80 (108)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHH
Confidence 4444443 58999999999999999999876665543
No 17
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=28.67 E-value=93 Score=23.78 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcC-cEEEEeeecCCcccCC----------CCCCCceeEEEEEEEechhHH------------HHHHHHHH
Q psy17051 59 AFERMLWRACRG-NVFLRQAEIETPLEDI----------NSGDPVYKSVFIIFFQGDQLK------------TRVMKICE 115 (152)
Q Consensus 59 ~FeR~LwR~tRG-N~~~~~~~i~~~l~Dp----------~tge~v~K~VFiVff~G~~l~------------~KI~KICd 115 (152)
...+.++....| .+++...++.. +.+. ..|+...+.+.+||.+++.+. .-++++-+
T Consensus 72 ~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~ 150 (196)
T cd01852 72 EIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE 150 (196)
T ss_pred HHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH
Confidence 344555555555 35555555554 2110 124445577888888876443 45666666
Q ss_pred hcCCceecCCCCh--HHHHHHHHHHHhHHHHH
Q psy17051 116 GFRATLYPCPEAP--TDRREMSMGVTTRIDDD 145 (152)
Q Consensus 116 sf~a~iy~~p~~~--~~r~~~l~eL~~~i~dl 145 (152)
..+.+.+.+.... ......+.+|-+.|+++
T Consensus 151 ~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 151 KCGGRYVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 6666655554332 33334455555555444
No 18
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=27.21 E-value=64 Score=21.63 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=29.6
Q ss_pred ceeeeeeeCCChhHHHHHHHHhhcCcEEEEeee
Q psy17051 46 RFVAGVALRERMPAFERMLWRACRGNVFLRQAE 78 (152)
Q Consensus 46 ~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~ 78 (152)
..|.|.|+..+..-|..-|-..|+|+..+...-
T Consensus 41 ~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f 73 (85)
T smart00838 41 QVIKAKVPLSEMFGYATDLRSATQGRATWSMEF 73 (85)
T ss_pred EEEEEECCHHHHhchHHHHHHhcCCeEEEEEEe
Confidence 479999999999999999999999998877553
No 19
>PRK04335 cell division protein ZipA; Provisional
Probab=26.94 E-value=2.8e+02 Score=24.16 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhcCcEEEEeeecCCc-ccCCCCC--CCceeEEEEEEEec--------hhHHHHHHHHHHhcCCceecCCC
Q psy17051 58 PAFERMLWRACRGNVFLRQAEIETP-LEDINSG--DPVYKSVFIIFFQG--------DQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 58 ~~FeR~LwR~tRGN~~~~~~~i~~~-l~Dp~tg--e~v~K~VFiVff~G--------~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
..|.|.+-....|++.+..+.+..| ..|+... -.+.-.+|.+-.++ +.+.+--++|++.+|+.+++=--
T Consensus 210 ~IFHRh~~~~g~G~vLFSlANm~~PGtFd~d~m~~fsT~GvtlFm~LP~~~d~~~~Fd~Ml~~A~~LA~~LgG~VlDd~R 289 (313)
T PRK04335 210 DIFHRHADLSGTGKVLFSVANMMQPGTLEHDDPAEFSTKGISFFMTLPCYGEAEQNFKLMLKTAQQIADDLGGNVLDDKR 289 (313)
T ss_pred CcceeccccCCCCceEEEeecccCCCCCCccchhhcccCcEEEEEeCCCCCcHHHHHHHHHHHHHHHHHHcCCEEECCCC
Confidence 3455554445668877777776654 2343321 23444555555553 57888899999999999997432
Q ss_pred ChHHHHHHHHHHHhHHHHHHH
Q psy17051 127 APTDRREMSMGVTTRIDDDYG 147 (152)
Q Consensus 127 ~~~~r~~~l~eL~~~i~dl~~ 147 (152)
. .-..+.+..+-++|.+.+.
T Consensus 290 ~-~LT~q~l~~~R~qI~~~~r 309 (313)
T PRK04335 290 N-LMTPNRLDAYRRQIVEFKV 309 (313)
T ss_pred C-cCCHHHHHHHHHHHHHHHH
Confidence 1 1112456667777777654
No 20
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.37 E-value=66 Score=24.20 Aligned_cols=66 Identities=6% Similarity=-0.006 Sum_probs=33.0
Q ss_pred eeCCChhHHHHHHH--HhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCCceecCCC
Q psy17051 52 ALRERMPAFERMLW--RACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 52 I~~~k~~~FeR~Lw--R~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
..+.+..-|+.+|= +-+.=++.+-+.++..--+|. +|=+... =+...+||+++|++.|.+++++-+
T Consensus 30 ~~SpEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydy-tG~~~~~--------r~~~y~kI~~~~~~~gf~v~D~s~ 97 (130)
T PF04914_consen 30 TKSPEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDY-TGLSKEM--------RQEYYKKIKYQLKSQGFNVADFSD 97 (130)
T ss_dssp SS-THHHHHHHHHHHHHHTT-EEEEEE----HHHHHH-TT--HHH--------HHHHHHHHHHHHHTTT--EEE-TT
T ss_pred cCCccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHH-hCCCHHH--------HHHHHHHHHHHHHHCCCEEEeccc
Confidence 34667777877663 222224555555554333332 1100000 058899999999999999999854
No 21
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=26.17 E-value=32 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCceecC
Q psy17051 107 KTRVMKICEGFRATLYPC 124 (152)
Q Consensus 107 ~~KI~KICdsf~a~iy~~ 124 (152)
...+.+||+.|++++-++
T Consensus 40 ~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 40 LDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp HHHHHHHHHHHT--HHHC
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 467899999999986554
No 22
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=25.69 E-value=90 Score=20.56 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=28.8
Q ss_pred ceeeeeeeCCChhHHHHHHHHhhcCcEEEEee
Q psy17051 46 RFVAGVALRERMPAFERMLWRACRGNVFLRQA 77 (152)
Q Consensus 46 ~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~ 77 (152)
..|.|.++..+..-|..-|-..|+|...+...
T Consensus 39 ~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~ 70 (78)
T cd04097 39 FTLEAEVPLNDMFGYSTELRSMTQGKGEFSME 70 (78)
T ss_pred EEEEEEECHHHhhChHHHHHhhCCCcEEEEEE
Confidence 47999999999999999999999999877654
No 23
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=24.98 E-value=2.4e+02 Score=21.03 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCCceecCCC-ChHHHHHHHHHHHhHHHHHHHhhh
Q psy17051 104 DQLKTRVMKICEGFRATLYPCPE-APTDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 104 ~~l~~KI~KICdsf~a~iy~~p~-~~~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
+++-.-|+-||+-- |+ +.+.|...++|...-+.||..||+
T Consensus 41 e~ia~~im~vc~Qn-------p~L~~~~R~~iirE~Daiv~DLeEVLa 81 (113)
T PF12290_consen 41 EQIASQIMAVCEQN-------PELEFSQRFQIIREADAIVYDLEEVLA 81 (113)
T ss_pred HHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888753 43 567889999999999999999986
No 24
>PRK03427 cell division protein ZipA; Provisional
Probab=24.97 E-value=2.5e+02 Score=24.69 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhhcCcEEEEeeecCCc-ccCCCCC--CCceeEEEEEEEec--------hhHHHHHHHHHHhcCCceecCC
Q psy17051 57 MPAFERMLWRACRGNVFLRQAEIETP-LEDINSG--DPVYKSVFIIFFQG--------DQLKTRVMKICEGFRATLYPCP 125 (152)
Q Consensus 57 ~~~FeR~LwR~tRGN~~~~~~~i~~~-l~Dp~tg--e~v~K~VFiVff~G--------~~l~~KI~KICdsf~a~iy~~p 125 (152)
...|.|.+=....|.+.+..+.+.+| .+|+.+- ..+.-.+|.+-.++ +.+.+--++|++.+|+.+.+=-
T Consensus 230 m~IFHRh~~~~g~G~vLFSlANmv~PGtFd~d~m~~fsTpGVtlFM~LP~~~d~~~~Fd~Ml~~A~~LA~~LgG~VlDd~ 309 (333)
T PRK03427 230 MNIFHRHLSPDGSGPVLFSLANMVKPGTFDPEMMSDFTTPGVTIFMQVPSYGDALQNFKLMLQSAQHIADEVGGVVLDDQ 309 (333)
T ss_pred CcceeecccCCCCCceEEEeecccCCCCCChhhhcccccCcEEEEEeCCCCCcHHHHHHHHHHHHHHHHHHcCCEEECCC
Confidence 34455555556678888888887664 3455332 23444555555554 5788889999999999999742
Q ss_pred CChHHHHHHHHHHHhHHHHHHH
Q psy17051 126 EAPTDRREMSMGVTTRIDDDYG 147 (152)
Q Consensus 126 ~~~~~r~~~l~eL~~~i~dl~~ 147 (152)
-. .-..+.+....++|.+...
T Consensus 310 R~-~LT~q~le~yr~rIr~~~~ 330 (333)
T PRK03427 310 RR-MMTPQKLREYQDRIREVKD 330 (333)
T ss_pred CC-cCCHHHHHHHHHHHHHHHh
Confidence 11 1112345556666665543
No 25
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=24.29 E-value=70 Score=20.13 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCceecCCCChHHHHHHHHHHHhHHHHHHHhh
Q psy17051 108 TRVMKICEGFRATLYPCPEAPTDRREMSMGVTTRIDDDYGAW 149 (152)
Q Consensus 108 ~KI~KICdsf~a~iy~~p~~~~~r~~~l~eL~~~i~dl~~~~ 149 (152)
.-|+.+++-....--+|++-..--...+.+++.+|++++.+.
T Consensus 18 ~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 18 EEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp HHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544333333343333344567788999999888654
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.10 E-value=38 Score=32.09 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHhcCCceecCCC
Q psy17051 104 DQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 104 ~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
..+=.=|+||+.+|+|.+|..+.
T Consensus 298 tp~P~~V~KiAasf~A~ly~P~~ 320 (652)
T COG2433 298 TPAPETVKKIAASFNAVLYTPDR 320 (652)
T ss_pred CCChHHHHHHHHHcCCcccCCcc
Confidence 35567799999999999998875
No 27
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=23.40 E-value=54 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHhcCCceecCC
Q psy17051 103 GDQLKTRVMKICEGFRATLYPCP 125 (152)
Q Consensus 103 G~~l~~KI~KICdsf~a~iy~~p 125 (152)
...-+..|.+||+.|+|++-++-
T Consensus 12 ~~~~r~ei~~l~~~f~a~ivd~~ 34 (75)
T PF10369_consen 12 TPENRSEILQLAEIFRARIVDVS 34 (75)
T ss_dssp SCHHHHHHHHHHHHTT-EEEEEE
T ss_pred CccCHHHHHHHHHHhCCEEEEEC
Confidence 45778999999999999999873
No 28
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=23.35 E-value=1.8e+02 Score=23.76 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=26.9
Q ss_pred EEEEEechhHHHHHHHHHHhcCCceecCCCChHHHHHHHHHHH
Q psy17051 97 FIIFFQGDQLKTRVMKICEGFRATLYPCPEAPTDRREMSMGVT 139 (152)
Q Consensus 97 FiVff~G~~l~~KI~KICdsf~a~iy~~p~~~~~r~~~l~eL~ 139 (152)
++|+.+...-..| .+.+..|||++..+|.+..++.....++.
T Consensus 91 ~~ivvp~~~~~~k-~~~l~~~Ga~vi~~~~~~~~~~~~a~~la 132 (304)
T cd01562 91 ATIVMPETAPAAK-VDATRAYGAEVVLYGEDFDEAEAKARELA 132 (304)
T ss_pred EEEEECCCCCHHH-HHHHHHcCCEEEEeCCCHHHHHHHHHHHH
Confidence 3455554333344 45789999999999987666555444443
No 29
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=22.46 E-value=3.7e+02 Score=23.22 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCcEEEEeeecCCc-ccCCCC--CCCceeEEEEEEEec--------hhHHHHHHHHHHhcCCceecCCCC
Q psy17051 59 AFERMLWRACRGNVFLRQAEIETP-LEDINS--GDPVYKSVFIIFFQG--------DQLKTRVMKICEGFRATLYPCPEA 127 (152)
Q Consensus 59 ~FeR~LwR~tRGN~~~~~~~i~~~-l~Dp~t--ge~v~K~VFiVff~G--------~~l~~KI~KICdsf~a~iy~~p~~ 127 (152)
.|.|..-....|++.+..+.+.+| .+|+.+ ...+.-.+|.+-.++ +.+.+-.++|++.+++.+++=--.
T Consensus 188 IFHRh~~~~g~G~VLFSlANm~~PGtFd~d~m~~fsTpGVtLFM~LP~~~d~~~aFd~Ml~~A~~LA~eLgG~VlDD~R~ 267 (293)
T PRK00269 188 IFHRHESMAGNGEVLFSMANAVKPGTFDLDDIDHFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELNGELKDDQRS 267 (293)
T ss_pred ceeeccccCCCCceEEEeecccCCCCCCchhhcccccCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHHcCCEEECCCCC
Confidence 344444444567777776665554 334432 223455566666664 578888999999999999974211
Q ss_pred hHHHHHHHHHHHhHHHHH
Q psy17051 128 PTDRREMSMGVTTRIDDD 145 (152)
Q Consensus 128 ~~~r~~~l~eL~~~i~dl 145 (152)
.-..+.++.+-++|.+.
T Consensus 268 -~LT~q~ie~yRqrI~e~ 284 (293)
T PRK00269 268 -VLTAQTIEHYRQRIVEF 284 (293)
T ss_pred -cCCHHHHHHHHHHHHHH
Confidence 11123445555555554
No 30
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.40 E-value=1.7e+02 Score=20.30 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEechhHHHHHHHHHHhcCCceecCCCChHHHHHHHH
Q psy17051 62 RMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPEAPTDRREMSM 136 (152)
Q Consensus 62 R~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G~~l~~KI~KICdsf~a~iy~~p~~~~~r~~~l~ 136 (152)
.++=++..|.+++--.+=++-+.-. ......=+|+..|...-+.+.+.|+..+..+..-|.+.-+-.+++.
T Consensus 33 ~~~~~~~~~~lvIt~gdR~di~~~a----~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~dtf~ta~~i~ 103 (105)
T PF07085_consen 33 DFLEYLKPGDLVITPGDREDIQLAA----IEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYDTFETARLIY 103 (105)
T ss_dssp HHHHCHHTTEEEEEETT-HHHHHHH----CCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-HHHHHHHHH
T ss_pred HHHhhcCCCeEEEEeCCcHHHHHHH----HHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHh
Confidence 4444556688887633221111000 0011334677778999999999999999999999987666555543
No 31
>PRK06683 hypothetical protein; Provisional
Probab=21.22 E-value=1.5e+02 Score=20.36 Aligned_cols=25 Identities=4% Similarity=0.057 Sum_probs=22.5
Q ss_pred echhHHHHHHHHHHhcCCceecCCC
Q psy17051 102 QGDQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 102 ~G~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
.++.+.++|...|+..+..++.+++
T Consensus 37 a~~~~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 37 ADMRLTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECC
Confidence 3579999999999999999999984
No 32
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=21.22 E-value=61 Score=24.47 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=27.1
Q ss_pred EEEEec--------hhHHHHHHHHHHhcCCceec--CCCChHHHHHHHHHHHhHHHHHHHhhhc
Q psy17051 98 IIFFQG--------DQLKTRVMKICEGFRATLYP--CPEAPTDRREMSMGVTTRIDDDYGAWAW 151 (152)
Q Consensus 98 iVff~G--------~~l~~KI~KICdsf~a~iy~--~p~~~~~r~~~l~eL~~~i~dl~~~~~~ 151 (152)
|||+|| +.-..-..+++...++.++. ++-.++ ....+.++|+..+++|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~------~~~p~~~~D~~~a~~~ 58 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE------APFPAALEDVKAAYRW 58 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT------SSTTHHHHHHHHHHHH
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc------ccccccccccccceee
Confidence 577776 34455677788766777663 332222 2345667777777776
No 33
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=20.77 E-value=3.1e+02 Score=22.56 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeE-----EEEEEEech-hHHHHHHHHHHhcCCcee-cCCCCh
Q psy17051 56 RMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKS-----VFIIFFQGD-QLKTRVMKICEGFRATLY-PCPEAP 128 (152)
Q Consensus 56 k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~-----VFiVff~G~-~l~~KI~KICdsf~a~iy-~~p~~~ 128 (152)
+...|..-|--...|.. ++.|++|..++....++ .=||+.-|= .+.. .+|-+-+..++| +.|.+.
T Consensus 69 D~dLl~~~L~~L~~g~~------v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d~kIfvdtd~D~ 140 (218)
T COG0572 69 DLDLLIEHLKDLKQGKP------VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMDLKIFVDTDADV 140 (218)
T ss_pred cHHHHHHHHHHHHcCCc------ccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcCEEEEEeCCccH
Confidence 34555677777778876 67788888776543222 113444451 2222 556666778999 777665
Q ss_pred HHHHHHHHHHHhHHHHHHHhhh
Q psy17051 129 TDRREMSMGVTTRIDDDYGAWA 150 (152)
Q Consensus 129 ~~r~~~l~eL~~~i~dl~~~~~ 150 (152)
..-+.....++.+-.++..+++
T Consensus 141 RliRri~RD~~~rg~~~e~vi~ 162 (218)
T COG0572 141 RLIRRIKRDVQERGRDLESVIE 162 (218)
T ss_pred HHHHHHHHHHHHhCCCHHHHHH
Confidence 5555666777777777777664
No 34
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=20.50 E-value=92 Score=20.38 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=29.5
Q ss_pred cceeeeeeeCCChhHHHHHHHHhhcCcEEEEee
Q psy17051 45 NRFVAGVALRERMPAFERMLWRACRGNVFLRQA 77 (152)
Q Consensus 45 l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~ 77 (152)
...+.|.|+..+..-|...|-..|+|+..+...
T Consensus 39 ~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~ 71 (79)
T cd01514 39 RVVIKAELPLAEMFGFATDLRSLTQGRASFSME 71 (79)
T ss_pred eEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEE
Confidence 458999999999999999999999999887654
No 35
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.29 E-value=59 Score=24.90 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=25.5
Q ss_pred eeEEEEEEEechhHHHHHHHHHHhcCCceecCCCChHH
Q psy17051 93 YKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPEAPTD 130 (152)
Q Consensus 93 ~K~VFiVff~G~~l~~KI~KICdsf~a~iy~~p~~~~~ 130 (152)
.|+|-||=| ..+++.|-+.+.+||++++-+......
T Consensus 36 g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~ 71 (178)
T PF02826_consen 36 GKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKP 71 (178)
T ss_dssp TSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHH
T ss_pred CCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCCh
Confidence 455544422 799999999999999999977554443
Done!