Query psy17051
Match_columns 152
No_of_seqs 103 out of 374
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 20:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17051.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17051hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ivya1 d.58.58.1 (A:2-89) Hyp 76.5 2.5 0.00018 27.2 5.2 47 95-141 2-55 (88)
2 d1zpwx1 d.58.58.1 (X:2-83) Hyp 73.1 2.2 0.00016 27.1 4.2 45 96-140 4-54 (82)
3 d1f46a_ d.129.4.1 (A:) Cell-di 72.4 12 0.00084 25.4 9.0 81 67-148 47-137 (139)
4 d2f1fa2 d.58.18.6 (A:78-163) A 38.2 25 0.0018 21.8 4.6 23 104-126 18-40 (86)
5 d1ygya1 c.2.1.4 (A:99-282) Pho 33.1 10 0.00076 26.5 2.2 23 103-125 52-74 (184)
6 d1t0kb_ d.79.3.1 (B:) Eukaryot 28.2 39 0.0029 20.9 4.3 28 103-130 41-68 (97)
7 d1v7ca_ c.79.1.1 (A:) Threonin 26.6 28 0.002 25.7 3.9 41 99-139 105-145 (351)
8 d1n0ua5 d.58.11.1 (A:726-842) 26.3 58 0.0042 20.7 5.1 40 46-85 41-85 (117)
9 d2pv7a2 c.2.1.6 (A:92-243) Pre 25.5 46 0.0034 21.4 4.5 53 64-123 97-151 (152)
10 d2i0xa1 d.58.58.1 (A:1-84) Hyp 23.8 30 0.0022 21.5 3.0 10 109-118 16-25 (84)
11 d2pc6a1 d.58.18.6 (A:78-163) A 22.6 22 0.0016 22.1 2.1 23 104-126 18-40 (86)
12 d1gdha1 c.2.1.4 (A:101-291) D- 22.2 16 0.0011 25.8 1.4 30 93-124 47-76 (191)
13 d1h3oa_ a.22.1.3 (A:) TAF(II)- 22.2 15 0.0011 21.2 1.1 23 100-122 2-24 (50)
14 d1r5pa_ c.47.1.15 (A:) Circadi 20.3 37 0.0027 21.6 2.9 29 95-123 2-35 (90)
15 d2bsya1 b.85.4.1 (A:4-116) Mon 20.2 99 0.0072 19.8 5.3 47 43-101 63-109 (113)
No 1
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=76.50 E-value=2.5 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=32.5
Q ss_pred EEEEEEE--echhHHHHHHHHHHhcCC-c----eecCCCChHHHHHHHHHHHhH
Q psy17051 95 SVFIIFF--QGDQLKTRVMKICEGFRA-T----LYPCPEAPTDRREMSMGVTTR 141 (152)
Q Consensus 95 ~VFiVff--~G~~l~~KI~KICdsf~a-~----iy~~p~~~~~r~~~l~eL~~~ 141 (152)
+.++|+| ..+.-+.||.|+|.++|. + +|.|.-+..+...+..+|..-
T Consensus 2 M~~lV~YDI~d~krr~kv~k~l~~yGl~rvQ~SVFeg~l~~~~~~~l~~~l~~~ 55 (88)
T d2ivya1 2 MLYLIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKII 55 (88)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHTTCEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCcHHHHHHHHHHHHhCCcceEeeEEEEEeCHHHHHHHHHHHHHH
Confidence 3466777 346788999999999985 3 577777776665555555443
No 2
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=73.12 E-value=2.2 Score=27.11 Aligned_cols=45 Identities=4% Similarity=0.268 Sum_probs=21.6
Q ss_pred EEEEEE--echhHHHHHHHHHHhcCCc----eecCCCChHHHHHHHHHHHh
Q psy17051 96 VFIIFF--QGDQLKTRVMKICEGFRAT----LYPCPEAPTDRREMSMGVTT 140 (152)
Q Consensus 96 VFiVff--~G~~l~~KI~KICdsf~a~----iy~~p~~~~~r~~~l~eL~~ 140 (152)
.++|.| ..+.-+.||.|+|.+|+-+ +|.|.-+..+...+..+|..
T Consensus 4 ~ylV~YDI~d~krr~kv~k~l~~yg~rvQ~SVFe~~lt~~~~~~l~~~l~~ 54 (82)
T d1zpwx1 4 LYAVAYDIPDDTRRVKLANLLKSYGERVQLSVFECYLDERLLEDLRRRARR 54 (82)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhCccceEEEEEEEcCHHHHHHHHHHHHH
Confidence 345555 2345555666666655532 34454444444444444443
No 3
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.43 E-value=12 Score=25.42 Aligned_cols=81 Identities=10% Similarity=0.013 Sum_probs=52.6
Q ss_pred hhcCcEEEEeeecCCc-ccCCCCCCC-ceeEEEEEEEec--------hhHHHHHHHHHHhcCCceecCCCChHHHHHHHH
Q psy17051 67 ACRGNVFLRQAEIETP-LEDINSGDP-VYKSVFIIFFQG--------DQLKTRVMKICEGFRATLYPCPEAPTDRREMSM 136 (152)
Q Consensus 67 ~tRGN~~~~~~~i~~~-l~Dp~tge~-v~K~VFiVff~G--------~~l~~KI~KICdsf~a~iy~~p~~~~~r~~~l~ 136 (152)
-..|+..+....+.+| ..|+..+.. +.=-+|.+-.++ +.+.+=.++||+.+++.+++=--++ -..+++.
T Consensus 47 ~~~g~~lFsvaN~~~PGtF~~d~~~~~t~gi~lfm~lp~~~~~~~aFd~Ml~~a~~la~~l~g~l~D~~r~~-lt~q~i~ 125 (139)
T d1f46a_ 47 DGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQLFKLMLQSAQHIADEVGGVVLDDQRRM-MTPQKLR 125 (139)
T ss_dssp TCCSCEEEEEEESSTTCCCCTTCCSCEESEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHTCEEECTTSCB-CCHHHHH
T ss_pred CCCCceEEEEEeCCCCCCCCchhhcceeceEEEEEeCCCCCchHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCHHHHH
Confidence 3467888888888665 445433332 233344444454 5888899999999999999864322 2235677
Q ss_pred HHHhHHHHHHHh
Q psy17051 137 GVTTRIDDDYGA 148 (152)
Q Consensus 137 eL~~~i~dl~~~ 148 (152)
.+.+++.|.+..
T Consensus 126 ~~R~~i~e~e~~ 137 (139)
T d1f46a_ 126 EYQDIIREVKDA 137 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887643
No 4
>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=38.17 E-value=25 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhcCCceecCCC
Q psy17051 104 DQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 104 ~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
..-+.+|.++|+.|+|++.+.-+
T Consensus 18 ~~~~~~i~~i~~~f~a~ivd~~~ 40 (86)
T d2f1fa2 18 GYGRDEVKRNTEIFRGQIIDVTP 40 (86)
T ss_dssp THHHHHHHHHHHHTTCEEEEECS
T ss_pred hhhHHHHHHHHHhcCeEEEEccC
Confidence 56677999999999999998654
No 5
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.10 E-value=10 Score=26.50 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHhcCCceecCC
Q psy17051 103 GDQLKTRVMKICEGFRATLYPCP 125 (152)
Q Consensus 103 G~~l~~KI~KICdsf~a~iy~~p 125 (152)
...+++++.|++.+|+++++-+.
T Consensus 52 ~G~IG~~va~~~~~fg~~v~~~d 74 (184)
T d1ygya1 52 LGRIGQLVAQRIAAFGAYVVAYD 74 (184)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEEC
T ss_pred ccchhHHHHHHhhhccceEEeec
Confidence 37899999999999999998764
No 6
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.18 E-value=39 Score=20.93 Aligned_cols=28 Identities=7% Similarity=-0.045 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHhcCCceecCCCChHH
Q psy17051 103 GDQLKTRVMKICEGFRATLYPCPEAPTD 130 (152)
Q Consensus 103 G~~l~~KI~KICdsf~a~iy~~p~~~~~ 130 (152)
++...+|+...|+..+..+|.++.+.++
T Consensus 41 ~~~~~~~i~~~~~~~~vp~~~~~~t~~e 68 (97)
T d1t0kb_ 41 PVLRKSELEYYAMLSKTKVYYFQGGNNE 68 (97)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECSSCHHH
T ss_pred CHHHHHHHHHHHHhcCCceEEEcCCHHH
Confidence 4799999999999999999998766544
No 7
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}
Probab=26.65 E-value=28 Score=25.65 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=25.6
Q ss_pred EEEechhHHHHHHHHHHhcCCceecCCCChHHHHHHHHHHH
Q psy17051 99 IFFQGDQLKTRVMKICEGFRATLYPCPEAPTDRREMSMGVT 139 (152)
Q Consensus 99 Vff~G~~l~~KI~KICdsf~a~iy~~p~~~~~r~~~l~eL~ 139 (152)
|+.+......+..+.+.++||.+..++.+.++......++.
T Consensus 105 i~~p~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~l~ 145 (351)
T d1v7ca_ 105 VVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLT 145 (351)
T ss_dssp EEEETTCSCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred eecCCchHHHHHHHhhhcCCCceEeeccccchhhhhHHHHh
Confidence 44443333333334578999999999988776655555443
No 8
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.32 E-value=58 Score=20.74 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=31.8
Q ss_pred ceeeeeeeCCChhHHHHHHHHhhcCcEEEE-----eeecCCcccC
Q psy17051 46 RFVAGVALRERMPAFERMLWRACRGNVFLR-----QAEIETPLED 85 (152)
Q Consensus 46 ~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~-----~~~i~~~l~D 85 (152)
-.|.+.|+..++.-|.--|--.|+|.+.+. +..++....|
T Consensus 41 ~~i~a~iP~~e~~gf~~~Lrs~T~G~a~~~~~f~~y~~v~~d~~d 85 (117)
T d1n0ua5 41 FTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLD 85 (117)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCTTC
T ss_pred EEEEEECCchhhcCHHHHHHhhCCCCceEEEEeCChhhccCCCcc
Confidence 368999999999999999999999997766 5555443333
No 9
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=25.47 E-value=46 Score=21.39 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEEec--hhHHHHHHHHHHhcCCceec
Q psy17051 64 LWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQG--DQLKTRVMKICEGFRATLYP 123 (152)
Q Consensus 64 LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff~G--~~l~~KI~KICdsf~a~iy~ 123 (152)
+-....++ |+-..++..|- .+....+. +++++| ....+|++.+.+..|+++|.
T Consensus 97 ~~~~~~~~-~v~~hP~~Gp~----~~~~~g~~--~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 97 MLEVHTGA-VLGLHPMFGAD----IASMAKQV--VVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp HHHHCSSE-EEEEEECSCTT----CSCCTTCE--EEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred HHHHccCC-EEEecccCCCc----ccccCCcE--EEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 34555665 55555665543 22222222 444444 56789999999999999984
No 10
>d2i0xa1 d.58.58.1 (A:1-84) Hypothetical protein PF1117 {Pyrococcus furiosus [TaxId: 2261]}
Probab=23.79 E-value=30 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=5.0
Q ss_pred HHHHHHHhcC
Q psy17051 109 RVMKICEGFR 118 (152)
Q Consensus 109 KI~KICdsf~ 118 (152)
|+.|+|.+++
T Consensus 16 kv~k~l~~yg 25 (84)
T d2i0xa1 16 KVKKFLRMHL 25 (84)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHHHHhC
Confidence 4555555444
No 11
>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=22.63 E-value=22 Score=22.06 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHhcCCceecCCC
Q psy17051 104 DQLKTRVMKICEGFRATLYPCPE 126 (152)
Q Consensus 104 ~~l~~KI~KICdsf~a~iy~~p~ 126 (152)
..-+.+|.++|+.|+|++-+.-+
T Consensus 18 ~~~~~~i~~i~~~f~a~ivd~~~ 40 (86)
T d2pc6a1 18 GKDREEMKRLADIFRGNIIDVTN 40 (86)
T ss_dssp THHHHHHHHHHHHTTCEEEEEET
T ss_pred hhhHHHHHHHHHHcCcEEEEcCC
Confidence 34588999999999999987643
No 12
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=22.21 E-value=16 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=22.5
Q ss_pred eeEEEEEEEechhHHHHHHHHHHhcCCceecC
Q psy17051 93 YKSVFIIFFQGDQLKTRVMKICEGFRATLYPC 124 (152)
Q Consensus 93 ~K~VFiVff~G~~l~~KI~KICdsf~a~iy~~ 124 (152)
.|++=||=| ..+++++-|++.+|+++++-+
T Consensus 47 g~tvgIiG~--G~IG~~va~~l~~fg~~v~~~ 76 (191)
T d1gdha1 47 NKTLGIYGF--GSIGQALAKRAQGFDMDIDYF 76 (191)
T ss_dssp TCEEEEECC--SHHHHHHHHHHHTTTCEEEEE
T ss_pred ccceEEeec--ccchHHHHHHHHhhccccccc
Confidence 355444422 689999999999999999754
No 13
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.16 E-value=15 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.1
Q ss_pred EEechhHHHHHHHHHHhcCCcee
Q psy17051 100 FFQGDQLKTRVMKICEGFRATLY 122 (152)
Q Consensus 100 ff~G~~l~~KI~KICdsf~a~iy 122 (152)
|.+-..+..||++||..+|..=-
T Consensus 2 FL~~~~Lq~ri~~I~~k~Gl~e~ 24 (50)
T d1h3oa_ 2 FLLQAPLQRRILEIGKKHGITEL 24 (50)
T ss_dssp CSCHHHHHHHHHHHHHTTTCCEE
T ss_pred CCChHHHHHHHHHHHHHcCCCcc
Confidence 34557899999999999987643
No 14
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Probab=20.35 E-value=37 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEEEEEec-----hhHHHHHHHHHHhcCCceec
Q psy17051 95 SVFIIFFQG-----DQLKTRVMKICEGFRATLYP 123 (152)
Q Consensus 95 ~VFiVff~G-----~~l~~KI~KICdsf~a~iy~ 123 (152)
.++-+|..| ..+.+.|++||+..-+..|.
T Consensus 2 y~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~ 35 (90)
T d1r5pa_ 2 YVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYA 35 (90)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred eEEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEE
Confidence 356778777 46678899999965444443
No 15
>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]}
Probab=20.17 E-value=99 Score=19.80 Aligned_cols=47 Identities=6% Similarity=-0.070 Sum_probs=32.1
Q ss_pred cccceeeeeeeCCChhHHHHHHHHhhcCcEEEEeeecCCcccCCCCCCCceeEEEEEEE
Q psy17051 43 HFNRFVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFF 101 (152)
Q Consensus 43 ~~l~~iaGvI~~~k~~~FeR~LwR~tRGN~~~~~~~i~~~l~Dp~tge~v~K~VFiVff 101 (152)
..+...+|+|+.+- ||.+.+...+..+.-+.-..|+..-..||+.+.
T Consensus 63 ~gl~~~~GvID~gY------------~Gei~v~l~N~~~~~~~i~~G~~~~qlv~~~~~ 109 (113)
T d2bsya1 63 RPVTSHVGIIDPGY------------TGELRLILQNQRRYNSTLRPSELKIHLAAFRYA 109 (113)
T ss_dssp SSEEECCEEECTTC------------CSCEEEEEEESSSSCEEECTTSCEEEEEEEEEE
T ss_pred ceeeecceeeCCCC------------eeeEEEEEEeCCCccEEEcCCCEEEEEEEEEcc
Confidence 34668899999985 899999988776543333457766665555443
Done!