RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17051
         (152 letters)



>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
           subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
           {Meiothermus ruber}
          Length = 357

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 11/112 (9%)

Query: 33  PLSWGGPGVPHFNRFVAGVALRERMPAFERMLWRACRGNVFLRQAEIETPLEDINSGDPV 92
            L+ G    P        VA  E + A  + L  A      L    +E  L         
Sbjct: 137 ALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEAEPLENQL--------- 187

Query: 93  YKSVFIIFFQGDQLKTRVMKICEGFRATLYPCPEAPTDRREMSMGVTTRIDD 144
             +  ++  + +    R      G     +P         + +  +  R   
Sbjct: 188 --AALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARL 237


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 63  MLWRACRGNVFLRQAEIETPLEDINSGDPVYKSVFIIFFQGDQLKTRVMKICEGFRATLY 122
           ML  +      L Q +++  +   NS  P  K V I    G +       +  G   +LY
Sbjct: 338 ML--SISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-----NLVVSGPPQSLY 387


>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
           hearing, membrane, synapse, transmembrane, membrane
           protein; 1.95A {Rattus norvegicus}
          Length = 144

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 14/58 (24%)

Query: 88  SGDPVYKSVFIIFFQGDQLKTRVMKIC-------EGFRATLYPCPEAPTDRREMSMGV 138
             D + K    + F+G    +RV++ C       E FR   +P   +      + + +
Sbjct: 36  RADRIAK----VTFRGQSFYSRVLENCEDVADFDETFR---WPVASSIDRNEVLEIQI 86


>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
           HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
          Length = 715

 Score = 25.8 bits (57), Expect = 7.6
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 28  LGSSPPLSWGGPGVPHFNRFVAGVALRERMPAFE------RMLWR 66
             + PP S    G   + + VAG+  R R   F+      ++ + 
Sbjct: 407 FDACPPASLKEGGYLEYAQKVAGIKARARSAKFKEHFSQAQLFYN 451


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,497,184
Number of extensions: 141429
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 9
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)