Query psy17052
Match_columns 68
No_of_seqs 111 out of 354
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:36:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189|consensus 99.9 6.5E-25 1.4E-29 170.0 5.5 67 1-67 36-102 (829)
2 PF01496 V_ATPase_I: V-type AT 99.3 2.4E-13 5.2E-18 105.0 0.0 66 1-66 11-76 (759)
3 COG4064 MtrG Tetrahydromethano 73.5 3.5 7.7E-05 24.3 2.2 24 16-39 17-40 (75)
4 TIGR01149 mtrG N5-methyltetrah 63.0 9.1 0.0002 22.4 2.4 24 16-39 14-37 (70)
5 PRK01026 tetrahydromethanopter 62.9 9 0.0002 22.8 2.4 24 16-39 17-40 (77)
6 PF04210 MtrG: Tetrahydrometha 62.5 8.9 0.00019 22.5 2.3 25 15-39 13-37 (70)
7 PRK00736 hypothetical protein; 48.6 46 0.00099 18.8 3.8 26 16-41 28-53 (68)
8 PRK00295 hypothetical protein; 44.9 52 0.0011 18.6 3.6 26 16-41 28-53 (68)
9 PF10776 DUF2600: Protein of u 44.7 11 0.00025 27.8 1.0 39 2-40 232-270 (330)
10 PF07304 SRA1: Steroid recepto 44.5 25 0.00054 23.0 2.5 22 21-42 65-86 (157)
11 COG4003 Uncharacterized protei 44.3 24 0.00053 21.6 2.3 22 17-38 38-59 (98)
12 PF03235 DUF262: Protein of un 43.0 9.2 0.0002 24.4 0.3 23 8-36 13-35 (221)
13 PF11239 DUF3040: Protein of u 42.2 15 0.00032 21.3 1.0 13 19-31 7-19 (82)
14 PF01517 HDV_ag: Hepatitis del 41.3 30 0.00065 23.6 2.5 26 15-40 19-44 (194)
15 PF14182 YgaB: YgaB-like prote 39.7 26 0.00057 20.9 1.9 21 18-38 21-41 (79)
16 PF12240 Angiomotin_C: Angiomo 35.4 41 0.0009 23.4 2.5 24 18-41 133-156 (205)
17 PF09868 DUF2095: Uncharacteri 34.9 23 0.0005 22.9 1.2 24 17-41 68-91 (128)
18 PF06825 HSBP1: Heat shock fac 34.9 17 0.00038 20.1 0.5 20 19-38 26-45 (54)
19 cd02641 R3H_Smubp-2_like R3H d 32.1 24 0.00051 19.5 0.8 16 5-20 22-37 (60)
20 KOG2775|consensus 29.5 77 0.0017 23.9 3.3 31 15-45 83-113 (397)
21 cd06006 R3H_unknown_2 R3H doma 27.9 27 0.00059 19.5 0.6 12 9-20 25-36 (59)
22 PF15358 TSKS: Testis-specific 25.7 94 0.002 24.3 3.2 16 24-39 198-213 (558)
23 COG1103 Archaea-specific pyrid 25.4 70 0.0015 23.9 2.5 25 17-41 275-299 (382)
24 TIGR00030 S21p ribosomal prote 24.1 87 0.0019 17.3 2.2 24 20-43 5-28 (58)
25 PRK00846 hypothetical protein; 23.1 1.7E+02 0.0037 17.2 3.8 26 16-41 36-61 (77)
26 PRK04406 hypothetical protein; 22.1 1.7E+02 0.0037 16.8 3.8 26 16-41 34-59 (75)
27 PF14073 Cep57_CLD: Centrosome 21.0 95 0.0021 21.1 2.3 21 21-41 71-91 (178)
28 KOG3314|consensus 20.7 1.4E+02 0.0031 20.5 3.1 33 10-43 14-53 (194)
29 KOG1003|consensus 20.4 91 0.002 21.7 2.1 21 20-40 80-100 (205)
30 KOG4117|consensus 20.2 92 0.002 18.1 1.8 26 18-43 38-67 (73)
No 1
>KOG2189|consensus
Probab=99.91 E-value=6.5e-25 Score=170.02 Aligned_cols=67 Identities=73% Similarity=1.150 Sum_probs=64.1
Q ss_pred CCCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHhhc
Q psy17052 1 MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASLM 67 (68)
Q Consensus 1 ~FrDLN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~~i~~~~~~~~~~~p~~~~id~l~~~l~ 67 (68)
||||||++|++|||+||+||||||||||+|||+++||.|++++++..++.|++|++++|++++++++
T Consensus 36 qFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~ 102 (829)
T KOG2189|consen 36 QFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLE 102 (829)
T ss_pred EeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999988778888999999999999875
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=99.32 E-value=2.4e-13 Score=105.04 Aligned_cols=66 Identities=62% Similarity=1.009 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHhh
Q psy17052 1 MHSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDVGESPEAPQPREMIDLEASL 66 (68)
Q Consensus 1 ~FrDLN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~~i~~~~~~~~~~~p~~~~id~l~~~l 66 (68)
||+|||+++++|||+|+++++|||||+|+|++++++|.|.++.++.....+..+.+..+++++..+
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l 76 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEEL 76 (759)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHH
Confidence 899999999999999999999999999999999999999998877544444445555555555443
No 3
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=73.53 E-value=3.5 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=19.6
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHh
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k 39 (68)
|-.=-+|+|++|+|+.|..++...
T Consensus 17 fne~~kRLdeieekvef~~~Ev~Q 40 (75)
T COG4064 17 FNEIHKRLDEIEEKVEFVNGEVYQ 40 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444458999999999999998864
No 4
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=63.02 E-value=9.1 Score=22.41 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=21.0
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHh
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k 39 (68)
|..=.+|+|++|.|+.|..+|+..
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Q 37 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678999999999999999874
No 5
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=62.90 E-value=9 Score=22.82 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.4
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHh
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k 39 (68)
|..=.+|+|++|.|+.|-.+|+..
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Q 40 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQ 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999999874
No 6
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=62.52 E-value=8.9 Score=22.47 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.5
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHh
Q psy17052 15 KFVNEVRRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 15 ~f~~~irRcde~er~lr~l~~~i~k 39 (68)
-|..=.+|+|++|.|+.|..+|+..
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3666678999999999999999874
No 7
>PRK00736 hypothetical protein; Provisional
Probab=48.57 E-value=46 Score=18.83 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.1
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
-+.+-+.++.+.++|+.|...+...+
T Consensus 28 v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 28 LAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667888999999999999987643
No 8
>PRK00295 hypothetical protein; Provisional
Probab=44.92 E-value=52 Score=18.61 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.6
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
-+.+-+.++.+.++++.+...+...+
T Consensus 28 v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 28 LVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566778999999999999887643
No 9
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=44.65 E-value=11 Score=27.76 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhc
Q psy17052 2 HSNLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKD 40 (68)
Q Consensus 2 FrDLN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~ 40 (68)
|+|++.|...-+..|+.+=.--++++.+|.+|.++-.+.
T Consensus 232 ~IDq~EDr~~GdLNFv~YY~~~~~~~~Rl~~f~~~A~~~ 270 (330)
T PF10776_consen 232 FIDQEEDREGGDLNFVFYYPDEEEMEERLKYFVEKALEQ 270 (330)
T ss_pred HhhhHhHhcCCCceeeeeCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988774
No 10
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=44.47 E-value=25 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCC
Q psy17052 21 RRCDEMERKLRYLEKEIKKDGI 42 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k~~i 42 (68)
|.|++++|+|..|...+....+
T Consensus 65 r~~~D~~KRL~iLfd~ln~g~L 86 (157)
T PF07304_consen 65 RVVDDIEKRLNILFDHLNNGKL 86 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-S
T ss_pred hHHHHHHHHHHHHHHHHhcCCC
Confidence 3489999999999999986443
No 11
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.31 E-value=24 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.3
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q psy17052 17 VNEVRRCDEMERKLRYLEKEIK 38 (68)
Q Consensus 17 ~~~irRcde~er~lr~l~~~i~ 38 (68)
...++|||-.|-.|..|+=.-+
T Consensus 38 ~D~L~rCdT~EEAlEii~yleK 59 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEK 59 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHH
Confidence 6778999998888876654333
No 12
>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function.
Probab=43.00 E-value=9.2 Score=24.44 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=14.7
Q ss_pred CCCcchhhhhhhhcchHHHHHHHHHHHHH
Q psy17052 8 DVNAFQRKFVNEVRRCDEMERKLRYLEKE 36 (68)
Q Consensus 8 ~v~~fqR~f~~~irRcde~er~lr~l~~~ 36 (68)
.+|.|||.|+=.-. ....++.+.
T Consensus 13 ~iP~yQR~yvW~~~------~~~~Li~si 35 (221)
T PF03235_consen 13 VIPDYQRDYVWDEE------QIEELIDSI 35 (221)
T ss_pred cCCCCCCCCccCHH------HHHHHHHHH
Confidence 57899999984333 344455555
No 13
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=42.16 E-value=15 Score=21.29 Aligned_cols=13 Identities=62% Similarity=0.956 Sum_probs=8.3
Q ss_pred hhcchHHHHHHHH
Q psy17052 19 EVRRCDEMERKLR 31 (68)
Q Consensus 19 ~irRcde~er~lr 31 (68)
|=|+++||||.|+
T Consensus 7 E~r~L~eiEr~L~ 19 (82)
T PF11239_consen 7 EQRRLEEIERQLR 19 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 4466777777663
No 14
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=41.25 E-value=30 Score=23.62 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.7
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHhc
Q psy17052 15 KFVNEVRRCDEMERKLRYLEKEIKKD 40 (68)
Q Consensus 15 ~f~~~irRcde~er~lr~l~~~i~k~ 40 (68)
.||+.-++.+++||.||-...-|+|.
T Consensus 19 ~wv~~rk~~eeler~lrk~~k~ikkl 44 (194)
T PF01517_consen 19 QWVSGRKKAEELERDLRKAKKKIKKL 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999884
No 15
>PF14182 YgaB: YgaB-like protein
Probab=39.68 E-value=26 Score=20.92 Aligned_cols=21 Identities=43% Similarity=0.884 Sum_probs=16.1
Q ss_pred hhhcchHHHHHHHHHHHHHHH
Q psy17052 18 NEVRRCDEMERKLRYLEKEIK 38 (68)
Q Consensus 18 ~~irRcde~er~lr~l~~~i~ 38 (68)
+++-||.++|+.|.-++.+-.
T Consensus 21 sElERCqeIE~eL~~l~~ea~ 41 (79)
T PF14182_consen 21 SELERCQEIEKELKELEREAE 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 578899999998877765543
No 16
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=35.38 E-value=41 Score=23.39 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=20.0
Q ss_pred hhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 18 NEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 18 ~~irRcde~er~lr~l~~~i~k~~ 41 (68)
..-+||-|||-+|+-|+.+|..-+
T Consensus 133 ~a~~K~qemE~RIK~LhaqI~EKD 156 (205)
T PF12240_consen 133 MANRKCQEMENRIKALHAQIAEKD 156 (205)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999998543
No 17
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.94 E-value=23 Score=22.86 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=17.0
Q ss_pred hhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 17 VNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 17 ~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
+..||||+..|-.|..|. -|.|+|
T Consensus 68 iD~lrRC~T~EEALEVIn-ylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVIN-YLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHH-HHHHhC
Confidence 778999999888776553 444444
No 18
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=34.86 E-value=17 Score=20.08 Aligned_cols=20 Identities=40% Similarity=0.523 Sum_probs=15.9
Q ss_pred hhcchHHHHHHHHHHHHHHH
Q psy17052 19 EVRRCDEMERKLRYLEKEIK 38 (68)
Q Consensus 19 ~irRcde~er~lr~l~~~i~ 38 (68)
=+.|.|+|.++|.-|+.-|.
T Consensus 26 I~~riDeM~~RIDdLE~si~ 45 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIA 45 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 36789999999988887775
No 19
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=32.14 E-value=24 Score=19.49 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=11.0
Q ss_pred CCCCCCcchhhhhhhh
Q psy17052 5 LNPDVNAFQRKFVNEV 20 (68)
Q Consensus 5 LN~~v~~fqR~f~~~i 20 (68)
+-|+++++||.++.++
T Consensus 22 F~p~ls~~eR~~vH~l 37 (60)
T cd02641 22 FPPTLSSHDRLLVHEL 37 (60)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 3456778888777655
No 20
>KOG2775|consensus
Probab=29.52 E-value=77 Score=23.87 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=26.0
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHhcCCCCC
Q psy17052 15 KFVNEVRRCDEMERKLRYLEKEIKKDGIPMM 45 (68)
Q Consensus 15 ~f~~~irRcde~er~lr~l~~~i~k~~i~~~ 45 (68)
.-.+.+||..|..|+.|+-.+-+.|.|+.+.
T Consensus 83 ~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ 113 (397)
T KOG2775|consen 83 DIYQDLRRAAEAHRQVRKYVQSIIKPGMTMI 113 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHH
Confidence 3578899999999999999988888887643
No 21
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.85 E-value=27 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=7.3
Q ss_pred CCcchhhhhhhh
Q psy17052 9 VNAFQRKFVNEV 20 (68)
Q Consensus 9 v~~fqR~f~~~i 20 (68)
.+++||.|+.++
T Consensus 25 M~~~~R~~vHdl 36 (59)
T cd06006 25 MRSPQRAFIHEL 36 (59)
T ss_pred CCHHHHHHHHHH
Confidence 355677776654
No 22
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=25.72 E-value=94 Score=24.33 Aligned_cols=16 Identities=38% Similarity=0.773 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17052 24 DEMERKLRYLEKEIKK 39 (68)
Q Consensus 24 de~er~lr~l~~~i~k 39 (68)
.-+|.|||||+.+++-
T Consensus 198 ~~LEekLr~lq~qLqd 213 (558)
T PF15358_consen 198 ALLEEKLRYLQQQLQD 213 (558)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3478899999999974
No 23
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=25.41 E-value=70 Score=23.91 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.7
Q ss_pred hhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 17 VNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 17 ~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
+..|||-|+=-++.|||.++|.|-+
T Consensus 275 ~eRVkrWdeEv~kaR~fv~elEkig 299 (382)
T COG1103 275 VERVKRWDEEVEKARWFVAELEKIG 299 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999976
No 24
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=24.09 E-value=87 Score=17.26 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=19.4
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCC
Q psy17052 20 VRRCDEMERKLRYLEKEIKKDGIP 43 (68)
Q Consensus 20 irRcde~er~lr~l~~~i~k~~i~ 43 (68)
|+--|.+|+-|+-|...+.+.||.
T Consensus 5 V~~~e~ie~alrrfkr~~~~~gil 28 (58)
T TIGR00030 5 VKEGESIDSALRRFKRKLEKEGIL 28 (58)
T ss_pred eCCCCcHHHHHHHHHHHHHHcchH
Confidence 344455999999999999999874
No 25
>PRK00846 hypothetical protein; Provisional
Probab=23.08 E-value=1.7e+02 Score=17.15 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.8
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
-+.+.+-++.+.++++++...++..+
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999998754
No 26
>PRK04406 hypothetical protein; Provisional
Probab=22.10 E-value=1.7e+02 Score=16.82 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=20.1
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 16 FVNEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 16 f~~~irRcde~er~lr~l~~~i~k~~ 41 (68)
-+.+-+-++.+.++|+.+...+...+
T Consensus 34 v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 34 LSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566778999999999998887543
No 27
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=20.98 E-value=95 Score=21.11 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHhcC
Q psy17052 21 RRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k~~ 41 (68)
-||--+|++|.|+...+..+.
T Consensus 71 tRCslLEKQLeyMRkmv~~ae 91 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESAE 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999888654
No 28
>KOG3314|consensus
Probab=20.70 E-value=1.4e+02 Score=20.46 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=26.5
Q ss_pred CcchhhhhhhhcchHHHHHH-------HHHHHHHHHhcCCC
Q psy17052 10 NAFQRKFVNEVRRCDEMERK-------LRYLEKEIKKDGIP 43 (68)
Q Consensus 10 ~~fqR~f~~~irRcde~er~-------lr~l~~~i~k~~i~ 43 (68)
+|-+| |-+++..|.+|-|+ ++||...|.|.|-.
T Consensus 14 npqar-~~ks~~kCq~~~~~~l~~nP~Vkfl~~am~k~~c~ 53 (194)
T KOG3314|consen 14 NPQAR-RGKSIDKCQDMIRRSLRTNPIVKFLMEAMEKSGCR 53 (194)
T ss_pred Cchhh-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHHcCCC
Confidence 45566 88999999999876 57899999998743
No 29
>KOG1003|consensus
Probab=20.38 E-value=91 Score=21.73 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.5
Q ss_pred hcchHHHHHHHHHHHHHHHhc
Q psy17052 20 VRRCDEMERKLRYLEKEIKKD 40 (68)
Q Consensus 20 irRcde~er~lr~l~~~i~k~ 40 (68)
.|.|+++.|+|-++++.+...
T Consensus 80 drK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 478999999999999999864
No 30
>KOG4117|consensus
Probab=20.20 E-value=92 Score=18.15 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=18.5
Q ss_pred hhhcchHHHHHHHHHHHHHHH----hcCCC
Q psy17052 18 NEVRRCDEMERKLRYLEKEIK----KDGIP 43 (68)
Q Consensus 18 ~~irRcde~er~lr~l~~~i~----k~~i~ 43 (68)
.=|+|.|+|..++.-|+.-|. .+|+.
T Consensus 38 QII~RiDDM~~riDDLEKnIaDLm~qagvE 67 (73)
T KOG4117|consen 38 QIIGRIDDMSSRIDDLEKNIADLMTQAGVE 67 (73)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHcccc
Confidence 347899999988888776544 45554
Done!