Query psy17052
Match_columns 68
No_of_seqs 111 out of 354
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:36:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 97.0 0.00036 1.2E-08 48.5 2.8 41 1-41 40-83 (357)
2 1a92_A Delta antigen; leucine 56.3 10 0.00035 20.0 2.5 26 15-40 8-33 (50)
3 1pyi_A Protein (pyrimidine pat 49.6 31 0.0011 18.9 4.5 24 23-46 50-73 (96)
4 3vmx_A Voltage-gated hydrogen 42.4 28 0.00094 18.2 2.8 22 21-42 25-46 (48)
5 3pp5_A BRK1, protein brick1; t 39.7 20 0.00069 20.2 2.2 18 21-38 52-69 (73)
6 3p8c_E Probable protein brick1 35.3 20 0.00067 20.4 1.7 19 21-39 52-70 (75)
7 4abx_A DNA repair protein RECN 33.8 26 0.00088 21.8 2.2 23 21-43 122-144 (175)
8 2yru_A Steroid receptor RNA ac 31.5 38 0.0013 20.3 2.7 22 21-42 35-57 (118)
9 3ljm_A Coil Ser L9C; de novo d 30.8 43 0.0015 15.6 2.2 18 21-38 8-25 (31)
10 2akf_A Coronin-1A; coiled coil 27.0 58 0.002 15.4 2.5 20 20-39 1-20 (32)
11 3ci9_A Heat shock factor-bindi 25.3 13 0.00044 19.4 -0.3 17 20-36 30-46 (48)
12 2cly_C ATP synthase coupling f 24.6 22 0.00075 20.3 0.6 19 5-23 1-19 (77)
13 2wh0_Q Pkcev3, protein kinase 24.0 42 0.0014 15.6 1.5 16 51-66 7-22 (31)
14 3a98_B Engulfment and cell mot 23.0 51 0.0017 21.4 2.2 29 14-46 156-184 (203)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=97.02 E-value=0.00036 Score=48.51 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=37.4
Q ss_pred CCCCCCCCCCcch--hhhh-hhhcchHHHHHHHHHHHHHHHhcC
Q psy17052 1 MHSNLNPDVNAFQ--RKFV-NEVRRCDEMERKLRYLEKEIKKDG 41 (68)
Q Consensus 1 ~FrDLN~~v~~fq--R~f~-~~irRcde~er~lr~l~~~i~k~~ 41 (68)
||+|+|++++.|+ ++|. +++++|+++.++++++.+.+.++.
T Consensus 40 hi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~ 83 (357)
T 3rrk_A 40 HIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLAT 83 (357)
T ss_dssp EEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999 8877 689999999999999999999764
No 2
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=56.26 E-value=10 Score=20.01 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=22.5
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHhc
Q psy17052 15 KFVNEVRRCDEMERKLRYLEKEIKKD 40 (68)
Q Consensus 15 ~f~~~irRcde~er~lr~l~~~i~k~ 40 (68)
.||+.=|+.+++||.||-....|+|-
T Consensus 8 qWv~~Rkk~eeler~lrk~kk~iKkl 33 (50)
T 1a92_A 8 QWVSGRKKLEELERDLRKLKKKIKKL 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778899999999999999999873
No 3
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=49.64 E-value=31 Score=18.92 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCC
Q psy17052 23 CDEMERKLRYLEKEIKKDGIPMMD 46 (68)
Q Consensus 23 cde~er~lr~l~~~i~k~~i~~~~ 46 (68)
.+.++.+|..|+..+.+.++....
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~~~ 73 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDPTK 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 567899999999999998875443
No 4
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=42.43 E-value=28 Score=18.20 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCC
Q psy17052 21 RRCDEMERKLRYLEKEIKKDGI 42 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k~~i 42 (68)
..|+++|+.+.=|...++.+|.
T Consensus 25 ~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 25 FSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHccHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999988874
No 5
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=39.67 E-value=20 Score=20.23 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy17052 21 RRCDEMERKLRYLEKEIK 38 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~ 38 (68)
.|+..+||+|.||+..+.
T Consensus 52 ~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 52 EKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 567889999999998875
No 6
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=35.28 E-value=20 Score=20.37 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.0
Q ss_pred cchHHHHHHHHHHHHHHHh
Q psy17052 21 RRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k 39 (68)
.|+..+||+|.||+..+.+
T Consensus 52 ~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 52 EKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677899999999998875
No 7
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=33.79 E-value=26 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCCC
Q psy17052 21 RRCDEMERKLRYLEKEIKKDGIP 43 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k~~i~ 43 (68)
.|+++++.+|.-|....+|||..
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg~~ 144 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYGPT 144 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999854
No 8
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.52 E-value=38 Score=20.34 Aligned_cols=22 Identities=23% Similarity=0.643 Sum_probs=19.1
Q ss_pred cc-hHHHHHHHHHHHHHHHhcCC
Q psy17052 21 RR-CDEMERKLRYLEKEIKKDGI 42 (68)
Q Consensus 21 rR-cde~er~lr~l~~~i~k~~i 42 (68)
|| +|+++++|..|..-+....+
T Consensus 35 k~~~~D~~KRL~~LfdkLn~~~L 57 (118)
T 2yru_A 35 KQVCDDISRRLALLREQWAGGKL 57 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 44 89999999999999998655
No 9
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.78 E-value=43 Score=15.62 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy17052 21 RRCDEMERKLRYLEKEIK 38 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~ 38 (68)
++|..+|.+|.-++.-+.
T Consensus 8 kkcaalesklqalekkle 25 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999988887665
No 10
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.96 E-value=58 Score=15.38 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=15.9
Q ss_pred hcchHHHHHHHHHHHHHHHh
Q psy17052 20 VRRCDEMERKLRYLEKEIKK 39 (68)
Q Consensus 20 irRcde~er~lr~l~~~i~k 39 (68)
|-|++|--|+|.-+.+++.+
T Consensus 1 isrlee~~r~l~~ivq~lq~ 20 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQE 20 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 45788888888888888876
No 11
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=25.27 E-value=13 Score=19.36 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=11.0
Q ss_pred hcchHHHHHHHHHHHHH
Q psy17052 20 VRRCDEMERKLRYLEKE 36 (68)
Q Consensus 20 irRcde~er~lr~l~~~ 36 (68)
+.|.|+|..+|.-|+.-
T Consensus 30 ~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 30 IGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHhHHHHHHhh
Confidence 56778888887766543
No 12
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=24.59 E-value=22 Score=20.30 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=12.6
Q ss_pred CCCCCCcchhhhhhhhcch
Q psy17052 5 LNPDVNAFQRKFVNEVRRC 23 (68)
Q Consensus 5 LN~~v~~fqR~f~~~irRc 23 (68)
+|..+-|.|..|+..||-.
T Consensus 1 ~~k~~DPIQqLFldKIREY 19 (77)
T 2cly_C 1 FNKELDPVQKLFVDKIREY 19 (77)
T ss_dssp ----CCGGGHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHH
Confidence 4677889999999888754
No 13
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=23.97 E-value=42 Score=15.65 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=12.1
Q ss_pred CCCCCcchHHHHHHhh
Q psy17052 51 PEAPQPREMIDLEASL 66 (68)
Q Consensus 51 ~~~p~~~~id~l~~~l 66 (68)
|.+|+..+|.+|+..+
T Consensus 7 ptspcdqeikelenni 22 (31)
T 2wh0_Q 7 PTSPCDQEIKELENNI 22 (31)
T ss_pred CCCchHHHHHHHHHHH
Confidence 4567778899998765
No 14
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=22.97 E-value=51 Score=21.45 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=22.9
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHhcCCCCCC
Q psy17052 14 RKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMD 46 (68)
Q Consensus 14 R~f~~~irRcde~er~lr~l~~~i~k~~i~~~~ 46 (68)
.-..++|.++-+|+-+||.|.- .|+.++.
T Consensus 156 ~et~~~v~~Ll~m~lklrLLdl----e~v~ip~ 184 (203)
T 3a98_B 156 DLTRNDLDTLLSMEIKLRLLDL----ENIQIPD 184 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGG----TTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcc----cCCcCCC
Confidence 3456889999999999999876 5677665
Done!