Query psy17052
Match_columns 68
No_of_seqs 111 out of 354
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 20:36:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17052.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17052hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1chma1 c.55.2.1 (A:2-156) Cre 26.6 32 0.0023 18.8 3.2 22 23-44 20-41 (155)
2 d2bgxa1 a.20.1.1 (A:180-260) P 25.3 4 0.00029 21.9 -1.0 12 9-20 48-59 (81)
3 d1kp0a1 c.55.2.1 (A:1-156) Cre 23.7 32 0.0023 18.7 2.8 21 24-44 22-42 (156)
4 d2axpa1 c.37.1.1 (A:2-165) Hyp 21.8 21 0.0016 20.8 1.7 14 26-39 80-93 (164)
5 d1m7va_ d.174.1.1 (A:) Nitric 21.7 31 0.0023 23.2 2.8 32 11-42 13-44 (363)
6 d1xrsa_ c.1.19.4 (A:) D-lysine 15.3 11 0.00083 26.5 -0.7 13 2-19 267-279 (516)
7 d2e9xc1 a.278.1.3 (C:1088-1192 14.2 26 0.0019 18.9 0.8 15 19-33 77-91 (105)
8 d1g5ha1 c.51.1.1 (A:343-469) T 14.1 94 0.0068 16.6 3.3 40 5-44 6-45 (127)
9 d1grja1 a.2.1.1 (A:2-79) GreA 13.6 41 0.003 17.4 1.5 22 21-42 52-73 (78)
10 d1pzqa_ a.34.3.1 (A:) Erythron 13.4 45 0.0033 16.6 1.5 13 21-33 12-24 (60)
No 1
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=26.55 E-value=32 Score=18.80 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCC
Q psy17052 23 CDEMERKLRYLEKEIKKDGIPM 44 (68)
Q Consensus 23 cde~er~lr~l~~~i~k~~i~~ 44 (68)
-+|+++++.=+.+.|+++|+..
T Consensus 20 ~~E~~~Rl~klr~~m~~~giDa 41 (155)
T d1chma1 20 AQEYANRQARLRAHLAAENIDA 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHcCCCE
Confidence 4699999999999999999773
No 2
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.29 E-value=4 Score=21.92 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=9.4
Q ss_pred CCcchhhhhhhh
Q psy17052 9 VNAFQRKFVNEV 20 (68)
Q Consensus 9 v~~fqR~f~~~i 20 (68)
|.+|||.|-.+.
T Consensus 48 i~AFQrhFRp~~ 59 (81)
T d2bgxa1 48 IMAFQMHFRPTL 59 (81)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHccccc
Confidence 568999997664
No 3
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=23.66 E-value=32 Score=18.68 Aligned_cols=21 Identities=29% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q psy17052 24 DEMERKLRYLEKEIKKDGIPM 44 (68)
Q Consensus 24 de~er~lr~l~~~i~k~~i~~ 44 (68)
+|+++++.-+.+.|++.||..
T Consensus 22 ~E~~~R~~klr~~M~e~~iDa 42 (156)
T d1kp0a1 22 AEMTRRZBRLRAWMAKSBIDA 42 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHCCCCE
Confidence 899999999999999999773
No 4
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=21.77 E-value=21 Score=20.77 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHh
Q psy17052 26 MERKLRYLEKEIKK 39 (68)
Q Consensus 26 ~er~lr~l~~~i~k 39 (68)
.||+|||++.-|+.
T Consensus 80 terqlrfiedkika 93 (164)
T d2axpa1 80 TERQLRFIEDKIKA 93 (164)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhh
Confidence 47999999999863
No 5
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.70 E-value=31 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=28.5
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHhcCC
Q psy17052 11 AFQRKFVNEVRRCDEMERKLRYLEKEIKKDGI 42 (68)
Q Consensus 11 ~fqR~f~~~irRcde~er~lr~l~~~i~k~~i 42 (68)
.|-+.|..++++-++.++++.-+..+|.+-|-
T Consensus 13 ~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGt 44 (363)
T d1m7va_ 13 AFIAECYQELGKEEEVKDRLDSIKSEIDRTGS 44 (363)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHccCC
Confidence 47788999999999999999999999998764
No 6
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]}
Probab=15.29 E-value=11 Score=26.46 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=9.5
Q ss_pred CCCCCCCCCcchhhhhhh
Q psy17052 2 HSNLNPDVNAFQRKFVNE 19 (68)
Q Consensus 2 FrDLN~~v~~fqR~f~~~ 19 (68)
|||.|. +|+|+.+
T Consensus 267 fRdINm-----~RtfvDq 279 (516)
T d1xrsa_ 267 FRDINM-----QRTMIDQ 279 (516)
T ss_dssp HHCBCH-----HHHHHHH
T ss_pred ecccch-----hHHHHHH
Confidence 677776 7887754
No 7
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.15 E-value=26 Score=18.92 Aligned_cols=15 Identities=53% Similarity=0.463 Sum_probs=11.1
Q ss_pred hhcchHHHHHHHHHH
Q psy17052 19 EVRRCDEMERKLRYL 33 (68)
Q Consensus 19 ~irRcde~er~lr~l 33 (68)
-++++|++||+|=-.
T Consensus 77 ~~~~Lde~Er~Lf~~ 91 (105)
T d2e9xc1 77 LVARLDEMERGLFQT 91 (105)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 367899999987443
No 8
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.14 E-value=94 Score=16.56 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHhcCCCC
Q psy17052 5 LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPM 44 (68)
Q Consensus 5 LN~~v~~fqR~f~~~irRcde~er~lr~l~~~i~k~~i~~ 44 (68)
|-|.+.|||=.-+.-...-+++......+.+.+.+.|+.+
T Consensus 6 lpp~lAP~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v 45 (127)
T d1g5ha1 6 LHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISV 45 (127)
T ss_dssp CCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCcccCCceEEEEecCCCCHHHHHHHHHHHHHHHHhcCce
Confidence 4477888886544434455777777788999999999875
No 9
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.65 E-value=41 Score=17.45 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHHHhcCC
Q psy17052 21 RRCDEMERKLRYLEKEIKKDGI 42 (68)
Q Consensus 21 rRcde~er~lr~l~~~i~k~~i 42 (68)
.+...++.++++|+..|..+.|
T Consensus 52 e~q~~~e~RI~eLe~~L~~a~I 73 (78)
T d1grja1 52 EQQGFCEGRIKDIEAKLSNAQV 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcee
Confidence 3456788999999999988754
No 10
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=13.35 E-value=45 Score=16.57 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHH
Q psy17052 21 RRCDEMERKLRYL 33 (68)
Q Consensus 21 rRcde~er~lr~l 33 (68)
-|+|++|+.|.-|
T Consensus 12 ~rld~le~al~al 24 (60)
T d1pzqa_ 12 DRLDELEKALEAL 24 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc
Confidence 4788988888654
Done!