RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17052
         (68 letters)



>d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase
          {Thermoanaerobacterium [TaxId: 28895]}
          Length = 89

 Score = 25.6 bits (56), Expect = 0.33
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 5  LNPDVNAFQRKFVNEV 20
          +N DV  ++RKF N V
Sbjct: 8  INNDVYIYERKFGNNV 23


>d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase
          {Bacillus circulans, different strains [TaxId: 1397]}
          Length = 90

 Score = 25.6 bits (56), Expect = 0.35
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 5  LNPDVNAFQRKFVNEV 20
          +N DV  ++RKF + V
Sbjct: 8  INNDVLIYERKFGSNV 23


>d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 89

 Score = 25.2 bits (55), Expect = 0.42
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 5  LNPDVNAFQRKFVNEV 20
          +N DV  ++R+F  +V
Sbjct: 8  INGDVYVYERQFGKDV 23


>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1
          and alpha-2 domains {Murine cytomegalovirus [TaxId:
          10366]}
          Length = 137

 Score = 25.4 bits (55), Expect = 0.46
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 6  NPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIP--MMDVGESPE 52
             V    ++FV   R+C E++ +L  ++   K  G+    +DVG + +
Sbjct: 49 ASHVEEENKEFV---RQCKELQAELDKMQNNSKVIGVKTVQLDVGCTSK 94


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 23.6 bits (50), Expect = 2.5
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 14 RKFVNEVRRCDEMERKLRYLEKEIKK 39
            F++++R C   E +++ + KE+  
Sbjct: 6  AVFISDIRNCKSKEAEIKRINKELAN 31


>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
           {Bacillus sp. GL1 [TaxId: 84635]}
          Length = 377

 Score = 23.5 bits (50), Expect = 3.0
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 31  RYLEKEIKKDGIPMMDVGESPEAPQPRE 58
           R+    + +DG+   D     E    R+
Sbjct: 251 RHFLARVPEDGVVYWDFEVPQEPSSYRD 278


>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 229

 Score = 23.3 bits (50), Expect = 3.0
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 8  DVNAFQRKFVNEVRRCDEMERKLRYLEKEIKKDGIPMMDV 47
          D+   + +F + V    ++E +L  L + I  + + ++++
Sbjct: 20 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNL 59


>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
           mustard (Sinapis alba) [TaxId: 3728]}
          Length = 499

 Score = 23.2 bits (49), Expect = 3.1
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 17  VNEVRRCDEMERKLRYLEKEIKKDGIPMM 45
           + +  R D +   L +L K IK+  + + 
Sbjct: 422 MLDYTRIDYLCSHLCFLNKVIKEKDVNVK 450


>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 22.1 bits (47), Expect = 6.9
 Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 1/24 (4%)

Query: 37  IKKDGIPMMDVGESPEAPQPREMI 60
               G+ +   GE   +   +  I
Sbjct: 117 FFGRGVGV-KAGEKAVSRSAKLQI 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,188
Number of extensions: 10076
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 13
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)