Query psy17054
Match_columns 171
No_of_seqs 114 out of 1128
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 20:38:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037|consensus 100.0 1.6E-29 3.5E-34 171.4 20.0 165 4-168 56-220 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 4.3E-25 9.2E-30 145.6 15.1 133 2-136 17-156 (160)
3 KOG0027|consensus 99.9 1E-23 2.2E-28 141.0 15.4 133 3-136 6-149 (151)
4 PTZ00184 calmodulin; Provision 99.9 9.4E-21 2E-25 126.2 15.4 133 3-136 9-148 (149)
5 KOG0028|consensus 99.9 7.4E-21 1.6E-25 123.2 14.0 133 3-136 31-170 (172)
6 PTZ00183 centrin; Provisional 99.9 1.1E-20 2.4E-25 127.3 15.3 134 2-136 14-154 (158)
7 KOG0030|consensus 99.8 1.1E-19 2.3E-24 115.1 12.6 133 1-135 7-150 (152)
8 KOG0031|consensus 99.8 5.8E-18 1.3E-22 109.1 14.6 129 2-135 29-164 (171)
9 KOG0044|consensus 99.8 4.2E-17 9.1E-22 111.3 14.6 145 3-147 24-186 (193)
10 KOG0034|consensus 99.7 3.1E-16 6.8E-21 107.0 13.2 135 3-142 31-181 (187)
11 COG5126 FRQ1 Ca2+-binding prot 99.7 4.1E-16 9E-21 103.1 12.2 125 42-169 20-157 (160)
12 KOG0036|consensus 99.7 1E-15 2.2E-20 113.1 14.0 152 4-155 13-173 (463)
13 PTZ00183 centrin; Provisional 99.7 4.1E-15 8.8E-20 100.0 15.9 129 41-171 16-157 (158)
14 KOG0027|consensus 99.7 6.3E-16 1.4E-20 103.4 11.8 93 73-167 9-112 (151)
15 KOG4223|consensus 99.6 3.1E-15 6.7E-20 107.6 10.8 163 3-168 75-269 (325)
16 KOG0044|consensus 99.6 5.8E-14 1.2E-18 96.0 15.9 145 19-168 6-175 (193)
17 PTZ00184 calmodulin; Provision 99.6 4.9E-14 1.1E-18 93.7 15.3 124 42-167 11-147 (149)
18 KOG0028|consensus 99.5 5.8E-13 1.3E-17 86.8 11.0 126 42-169 33-171 (172)
19 KOG0034|consensus 99.5 8E-12 1.7E-16 85.5 14.7 130 39-170 27-177 (187)
20 KOG0037|consensus 99.4 2.2E-12 4.8E-17 88.3 10.9 97 71-169 56-153 (221)
21 cd05022 S-100A13 S-100A13: S-1 99.4 1E-12 2.3E-17 79.4 7.6 68 70-137 6-76 (89)
22 KOG0031|consensus 99.4 1E-11 2.3E-16 80.4 11.6 95 69-169 29-130 (171)
23 PF13499 EF-hand_7: EF-hand do 99.4 3.3E-12 7.1E-17 73.4 8.0 62 73-134 1-66 (66)
24 KOG0030|consensus 99.3 2E-11 4.4E-16 77.8 10.1 97 71-169 10-117 (152)
25 PLN02964 phosphatidylserine de 99.3 2.1E-11 4.6E-16 97.1 12.3 95 2-100 140-243 (644)
26 KOG2643|consensus 99.3 1.9E-11 4.1E-16 91.4 11.1 160 6-168 234-453 (489)
27 cd05027 S-100B S-100B: S-100B 99.3 2.6E-11 5.7E-16 73.4 9.5 68 70-137 6-80 (88)
28 PLN02964 phosphatidylserine de 99.3 2.8E-11 6E-16 96.4 11.0 93 70-168 141-243 (644)
29 PF13499 EF-hand_7: EF-hand do 99.3 1.5E-11 3.2E-16 70.7 6.7 62 6-68 1-66 (66)
30 KOG4223|consensus 99.3 2E-11 4.3E-16 88.2 8.7 129 5-133 163-302 (325)
31 KOG0751|consensus 99.3 1.6E-10 3.5E-15 87.8 12.5 164 2-170 30-209 (694)
32 cd05029 S-100A6 S-100A6: S-100 99.3 7.6E-11 1.7E-15 71.4 8.8 69 70-138 8-81 (88)
33 KOG0038|consensus 99.2 7.4E-11 1.6E-15 75.9 8.7 121 21-146 55-187 (189)
34 cd05022 S-100A13 S-100A13: S-1 99.2 3.6E-11 7.8E-16 72.8 6.7 69 3-71 6-76 (89)
35 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.6E-15 69.9 9.6 73 71-143 8-87 (92)
36 cd05031 S-100A10_like S-100A10 99.2 3.4E-10 7.4E-15 69.6 9.4 71 71-141 7-84 (94)
37 cd05026 S-100Z S-100Z: S-100Z 99.2 3.8E-10 8.3E-15 69.2 9.4 69 70-138 8-83 (93)
38 KOG0377|consensus 99.2 7.5E-10 1.6E-14 83.2 12.5 134 4-139 463-618 (631)
39 cd05027 S-100B S-100B: S-100B 99.2 2.4E-10 5.3E-15 69.2 8.2 69 3-71 6-80 (88)
40 PF13833 EF-hand_8: EF-hand do 99.2 2.6E-10 5.7E-15 62.7 7.6 52 85-136 1-53 (54)
41 KOG0036|consensus 99.2 5.4E-10 1.2E-14 83.3 10.7 123 41-170 13-148 (463)
42 smart00027 EH Eps15 homology d 99.1 9.9E-10 2.1E-14 67.8 9.7 70 70-141 8-77 (96)
43 smart00027 EH Eps15 homology d 99.1 3.1E-10 6.6E-15 70.1 6.9 71 3-76 8-78 (96)
44 cd00052 EH Eps15 homology doma 99.1 5.3E-10 1.1E-14 64.2 7.1 62 75-138 2-63 (67)
45 cd00213 S-100 S-100: S-100 dom 99.1 1.4E-09 3.1E-14 66.0 8.7 68 70-137 6-80 (88)
46 cd05026 S-100Z S-100Z: S-100Z 99.1 1E-09 2.2E-14 67.3 7.8 69 4-72 9-83 (93)
47 cd00213 S-100 S-100: S-100 dom 99.1 7.9E-10 1.7E-14 67.1 7.1 70 2-71 5-80 (88)
48 cd05025 S-100A1 S-100A1: S-100 99.1 1.9E-09 4.2E-14 66.0 8.9 73 3-75 7-85 (92)
49 cd05023 S-100A11 S-100A11: S-1 99.1 2.1E-09 4.5E-14 65.2 8.4 68 70-137 7-81 (89)
50 cd00052 EH Eps15 homology doma 99.0 2E-09 4.4E-14 61.7 7.5 63 7-72 1-63 (67)
51 cd00051 EFh EF-hand, calcium b 99.0 2.6E-09 5.7E-14 59.8 7.6 61 74-134 2-62 (63)
52 KOG2643|consensus 99.0 2E-09 4.4E-14 80.8 8.9 116 52-169 209-347 (489)
53 PF14658 EF-hand_9: EF-hand do 99.0 3.2E-09 7E-14 59.7 7.1 61 76-136 2-64 (66)
54 cd05029 S-100A6 S-100A6: S-100 99.0 3.7E-09 7.9E-14 64.0 8.0 68 4-71 9-80 (88)
55 KOG0041|consensus 99.0 5.6E-09 1.2E-13 70.8 9.1 94 61-154 87-191 (244)
56 KOG0751|consensus 99.0 9.5E-09 2.1E-13 78.4 11.3 161 5-169 108-279 (694)
57 KOG2562|consensus 99.0 8.7E-09 1.9E-13 78.0 10.1 153 5-162 174-373 (493)
58 cd05031 S-100A10_like S-100A10 99.0 8.8E-09 1.9E-13 63.3 8.5 69 4-72 7-81 (94)
59 cd00252 SPARC_EC SPARC_EC; ext 98.9 7.8E-09 1.7E-13 65.6 7.2 63 70-136 46-108 (116)
60 cd05023 S-100A11 S-100A11: S-1 98.9 9.1E-09 2E-13 62.4 6.9 69 3-71 7-81 (89)
61 PF13833 EF-hand_8: EF-hand do 98.9 1.1E-08 2.3E-13 56.2 6.5 52 18-70 1-53 (54)
62 cd00051 EFh EF-hand, calcium b 98.9 1.1E-08 2.3E-13 57.3 6.8 61 7-68 2-62 (63)
63 PF14658 EF-hand_9: EF-hand do 98.9 1.5E-08 3.3E-13 57.0 6.3 62 9-70 2-64 (66)
64 cd05030 calgranulins Calgranul 98.8 2E-08 4.4E-13 60.8 7.1 67 71-137 7-80 (88)
65 KOG4251|consensus 98.8 1E-08 2.2E-13 71.8 5.8 162 3-166 99-307 (362)
66 cd05030 calgranulins Calgranul 98.8 2.3E-08 4.9E-13 60.6 5.7 69 3-71 6-80 (88)
67 KOG0040|consensus 98.7 1.4E-07 3.1E-12 80.0 11.1 124 3-134 2251-2396(2399)
68 cd00252 SPARC_EC SPARC_EC; ext 98.7 8.2E-08 1.8E-12 61.0 7.0 60 4-68 47-106 (116)
69 cd05024 S-100A10 S-100A10: A s 98.6 8.3E-07 1.8E-11 53.5 9.4 69 71-140 7-80 (91)
70 cd05024 S-100A10 S-100A10: A s 98.5 1.1E-06 2.3E-11 53.0 8.0 69 3-72 6-78 (91)
71 KOG0377|consensus 98.5 3E-06 6.5E-11 64.4 11.5 126 41-168 463-615 (631)
72 KOG0041|consensus 98.5 4.7E-07 1E-11 61.7 6.0 69 2-71 96-164 (244)
73 PF00036 EF-hand_1: EF hand; 98.4 6.2E-07 1.3E-11 42.4 4.0 25 75-99 3-27 (29)
74 PF00036 EF-hand_1: EF hand; 98.4 5.9E-07 1.3E-11 42.5 3.6 26 140-167 2-27 (29)
75 PF14788 EF-hand_10: EF hand; 98.4 3.2E-06 6.9E-11 45.0 6.4 50 88-137 1-50 (51)
76 PF12763 EF-hand_4: Cytoskelet 98.4 5.9E-06 1.3E-10 51.4 8.4 68 2-73 7-74 (104)
77 KOG2562|consensus 98.3 6.9E-06 1.5E-10 62.6 9.7 118 11-132 284-420 (493)
78 KOG0038|consensus 98.3 3.8E-06 8.1E-11 54.5 7.2 111 58-170 55-179 (189)
79 PF13405 EF-hand_6: EF-hand do 98.3 1.9E-06 4.2E-11 41.5 4.0 30 73-102 1-31 (31)
80 PF12763 EF-hand_4: Cytoskelet 98.2 3.2E-05 7E-10 48.1 9.7 66 71-139 9-74 (104)
81 KOG1029|consensus 98.2 4.3E-05 9.2E-10 61.9 12.6 126 7-138 18-259 (1118)
82 PF13405 EF-hand_6: EF-hand do 98.2 2.3E-06 5E-11 41.2 2.9 27 6-32 1-27 (31)
83 KOG4666|consensus 98.1 1.1E-05 2.3E-10 59.1 6.7 117 52-170 237-361 (412)
84 KOG0169|consensus 98.1 7.6E-05 1.7E-09 60.3 11.0 131 4-136 135-274 (746)
85 KOG0040|consensus 98.0 3.3E-05 7.1E-10 66.4 8.3 88 72-162 2253-2355(2399)
86 PF13202 EF-hand_5: EF hand; P 97.9 1.9E-05 4.1E-10 35.9 3.4 23 75-97 2-24 (25)
87 PRK12309 transaldolase/EF-hand 97.9 4.6E-05 1E-09 58.3 7.5 54 71-137 333-386 (391)
88 PF13202 EF-hand_5: EF hand; P 97.9 1.5E-05 3.4E-10 36.2 2.6 24 7-30 1-24 (25)
89 PRK12309 transaldolase/EF-hand 97.9 6E-05 1.3E-09 57.7 7.3 65 30-101 322-386 (391)
90 KOG1707|consensus 97.9 0.00014 3E-09 57.4 9.0 132 3-137 193-378 (625)
91 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.5E-05 3.3E-10 50.4 2.1 61 71-133 53-113 (113)
92 PF14788 EF-hand_10: EF hand; 97.7 0.00026 5.6E-09 37.7 5.6 48 22-70 2-49 (51)
93 KOG4251|consensus 97.7 0.00029 6.3E-09 49.9 7.3 114 21-134 215-343 (362)
94 KOG4666|consensus 97.6 0.00056 1.2E-08 50.4 7.6 122 18-145 240-368 (412)
95 KOG0046|consensus 97.4 0.0008 1.7E-08 52.5 7.6 66 71-137 18-86 (627)
96 PF09279 EF-hand_like: Phospho 97.3 0.0015 3.2E-08 38.9 5.9 62 74-136 2-69 (83)
97 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00019 4.1E-09 45.5 2.1 59 5-66 54-112 (113)
98 KOG0046|consensus 97.2 0.0017 3.8E-08 50.7 6.9 66 4-70 18-85 (627)
99 PF09279 EF-hand_like: Phospho 97.1 0.0014 3E-08 39.0 4.5 63 6-69 1-68 (83)
100 smart00054 EFh EF-hand, calciu 97.0 0.0008 1.7E-08 30.6 2.7 27 7-33 2-28 (29)
101 smart00054 EFh EF-hand, calciu 96.7 0.0033 7.1E-08 28.4 3.1 19 78-96 6-24 (29)
102 PF05042 Caleosin: Caleosin re 96.7 0.033 7.1E-07 37.7 8.8 129 5-134 7-164 (174)
103 KOG0169|consensus 96.6 0.13 2.7E-06 42.5 13.0 122 41-168 135-274 (746)
104 KOG4065|consensus 96.4 0.02 4.4E-07 35.9 6.0 58 76-133 71-142 (144)
105 PF05517 p25-alpha: p25-alpha 96.3 0.026 5.7E-07 37.8 6.7 65 7-71 1-70 (154)
106 PF05517 p25-alpha: p25-alpha 96.3 0.07 1.5E-06 35.8 8.7 60 78-137 8-70 (154)
107 KOG1029|consensus 96.0 0.018 4E-07 47.3 5.8 66 3-71 193-258 (1118)
108 PLN02952 phosphoinositide phos 95.9 0.098 2.1E-06 42.6 9.1 80 56-136 14-110 (599)
109 PF05042 Caleosin: Caleosin re 95.8 0.067 1.5E-06 36.2 6.8 56 105-163 93-161 (174)
110 KOG4065|consensus 95.0 0.092 2E-06 33.1 5.0 58 9-66 71-141 (144)
111 KOG1265|consensus 94.8 1.4 3E-05 37.6 12.5 117 16-136 159-299 (1189)
112 KOG1707|consensus 94.8 0.51 1.1E-05 38.2 9.7 97 72-170 195-345 (625)
113 KOG1955|consensus 94.7 0.081 1.8E-06 41.6 5.2 66 2-70 228-293 (737)
114 KOG0035|consensus 94.4 0.53 1.1E-05 40.0 9.5 92 4-96 746-848 (890)
115 KOG1955|consensus 94.4 0.13 2.7E-06 40.6 5.6 65 71-137 230-294 (737)
116 KOG2243|consensus 94.0 0.35 7.5E-06 43.1 7.8 60 75-135 4060-4119(5019)
117 PF09069 EF-hand_3: EF-hand; 93.8 0.45 9.8E-06 28.8 6.0 63 4-69 2-74 (90)
118 KOG3555|consensus 93.7 0.093 2E-06 39.4 3.7 60 73-136 251-310 (434)
119 KOG2243|consensus 93.7 0.15 3.2E-06 45.2 5.2 59 9-69 4061-4119(5019)
120 KOG4578|consensus 93.7 0.048 1E-06 40.6 2.0 56 45-100 336-398 (421)
121 KOG4347|consensus 93.3 0.22 4.8E-06 40.4 5.3 72 22-94 535-612 (671)
122 KOG0042|consensus 92.7 0.21 4.6E-06 40.1 4.4 68 3-71 591-658 (680)
123 KOG0998|consensus 92.7 0.18 4E-06 42.9 4.4 63 4-70 128-190 (847)
124 KOG0042|consensus 92.6 0.42 9.2E-06 38.5 5.9 67 73-139 594-660 (680)
125 KOG4578|consensus 91.9 0.16 3.4E-06 38.0 2.7 59 77-135 338-397 (421)
126 KOG0998|consensus 91.5 0.61 1.3E-05 39.9 6.0 129 5-139 11-193 (847)
127 KOG3555|consensus 91.0 0.41 8.8E-06 36.1 4.0 97 5-102 211-312 (434)
128 PF08726 EFhand_Ca_insen: Ca2+ 90.7 0.24 5.2E-06 28.4 2.1 53 72-132 6-65 (69)
129 KOG0035|consensus 90.0 2.2 4.8E-05 36.4 7.9 91 71-164 746-848 (890)
130 KOG4347|consensus 88.7 1.2 2.6E-05 36.4 5.3 57 73-130 556-612 (671)
131 PF12174 RST: RCD1-SRO-TAF4 (R 86.4 4.2 9.1E-05 23.4 5.3 50 85-137 5-54 (70)
132 PF09069 EF-hand_3: EF-hand; 86.0 5.7 0.00012 24.0 6.8 62 72-136 3-75 (90)
133 PLN02952 phosphoinositide phos 85.2 8.3 0.00018 31.9 8.3 81 85-168 13-110 (599)
134 KOG3866|consensus 83.4 2.3 5E-05 31.8 4.1 23 10-32 249-271 (442)
135 PF11116 DUF2624: Protein of u 83.4 7.5 0.00016 23.2 7.4 51 87-137 13-63 (85)
136 PF08976 DUF1880: Domain of un 83.2 1.3 2.9E-05 28.0 2.5 31 39-69 4-34 (118)
137 PLN02222 phosphoinositide phos 83.2 5.8 0.00012 32.6 6.6 62 73-136 26-90 (581)
138 KOG2871|consensus 82.9 1.1 2.4E-05 34.2 2.4 62 4-66 308-370 (449)
139 PF08976 DUF1880: Domain of un 82.5 1.8 3.8E-05 27.4 2.8 32 105-136 4-35 (118)
140 COG2818 Tag 3-methyladenine DN 80.4 2.7 5.8E-05 29.0 3.3 52 65-116 48-99 (188)
141 KOG1264|consensus 79.8 18 0.00038 31.2 8.3 132 5-137 144-294 (1267)
142 KOG3449|consensus 79.4 13 0.00028 23.3 6.0 55 74-133 3-57 (112)
143 PLN02228 Phosphoinositide phos 79.2 12 0.00026 30.7 7.2 28 40-69 22-49 (567)
144 PLN02222 phosphoinositide phos 78.7 9.3 0.0002 31.5 6.4 64 4-69 24-89 (581)
145 PF08414 NADPH_Ox: Respiratory 78.3 3.5 7.5E-05 25.4 3.0 61 5-71 30-93 (100)
146 KOG4286|consensus 76.9 47 0.001 28.4 11.5 125 39-168 417-580 (966)
147 PLN02228 Phosphoinositide phos 76.7 14 0.0003 30.4 6.9 65 3-69 22-91 (567)
148 PLN02230 phosphoinositide phos 76.5 16 0.00034 30.3 7.1 64 72-136 29-102 (598)
149 PF01023 S_100: S-100/ICaBP ty 76.0 8 0.00017 19.9 3.7 31 136-167 4-35 (44)
150 PF08726 EFhand_Ca_insen: Ca2+ 73.4 4.4 9.6E-05 23.2 2.5 55 3-66 4-65 (69)
151 PF07879 PHB_acc_N: PHB/PHA ac 70.1 14 0.00031 20.7 3.9 39 79-117 10-58 (64)
152 KOG3866|consensus 69.8 20 0.00044 27.0 5.7 23 111-133 299-321 (442)
153 PF07308 DUF1456: Protein of u 66.3 22 0.00048 20.2 5.4 47 89-135 14-60 (68)
154 TIGR00624 tag DNA-3-methyladen 64.8 11 0.00024 26.0 3.4 52 65-116 46-97 (179)
155 PLN02230 phosphoinositide phos 63.9 39 0.00084 28.1 6.8 65 4-69 28-101 (598)
156 PF12995 DUF3879: Domain of un 63.9 40 0.00088 22.9 5.7 56 89-152 2-57 (186)
157 KOG1265|consensus 63.1 33 0.00072 29.9 6.4 65 5-69 221-298 (1189)
158 PRK10353 3-methyl-adenine DNA 63.0 9.4 0.0002 26.5 2.8 52 65-116 47-98 (187)
159 PLN02223 phosphoinositide phos 62.8 36 0.00078 27.9 6.4 14 123-136 79-92 (537)
160 PLN02223 phosphoinositide phos 62.7 37 0.00081 27.8 6.4 66 3-69 14-91 (537)
161 TIGR01848 PHA_reg_PhaR polyhyd 62.5 36 0.00078 21.3 5.8 19 81-99 12-30 (107)
162 PTZ00373 60S Acidic ribosomal 62.3 32 0.00069 21.8 4.9 54 74-132 5-58 (112)
163 KOG2871|consensus 61.8 10 0.00022 29.3 3.0 62 72-133 309-371 (449)
164 PF05099 TerB: Tellurite resis 58.3 14 0.00031 23.8 3.1 81 85-167 36-125 (140)
165 KOG3077|consensus 57.0 77 0.0017 23.4 11.4 66 3-69 62-128 (260)
166 PF14513 DAG_kinase_N: Diacylg 55.9 57 0.0012 21.5 6.0 63 20-85 6-82 (138)
167 KOG4004|consensus 55.2 5.8 0.00013 27.8 0.8 59 76-136 191-250 (259)
168 PF00404 Dockerin_1: Dockerin 55.1 18 0.00038 15.4 2.3 15 15-29 1-15 (21)
169 PF03352 Adenine_glyco: Methyl 55.1 12 0.00025 25.9 2.2 52 65-116 42-93 (179)
170 cd05833 Ribosomal_P2 Ribosomal 54.6 52 0.0011 20.7 5.0 55 75-134 4-58 (109)
171 PHA02335 hypothetical protein 54.4 38 0.00083 21.1 4.1 42 110-153 12-53 (118)
172 KOG0039|consensus 54.3 36 0.00077 28.6 5.3 78 59-137 4-90 (646)
173 PF11116 DUF2624: Protein of u 53.5 47 0.001 19.9 7.5 51 20-71 13-63 (85)
174 cd07313 terB_like_2 tellurium 53.0 27 0.00059 21.2 3.6 51 86-136 13-65 (104)
175 KOG1954|consensus 52.6 33 0.00072 26.9 4.4 59 6-68 445-503 (532)
176 PHA02105 hypothetical protein 51.8 39 0.00085 18.5 3.9 16 152-167 41-56 (68)
177 COG4359 Uncharacterized conser 51.8 53 0.0012 23.0 4.9 73 56-136 11-87 (220)
178 KOG2419|consensus 51.3 13 0.00029 30.9 2.3 47 123-169 520-579 (975)
179 KOG4403|consensus 49.9 1E+02 0.0022 24.6 6.6 29 72-100 68-96 (575)
180 KOG0506|consensus 48.3 58 0.0013 26.3 5.2 79 77-155 91-198 (622)
181 PF07308 DUF1456: Protein of u 47.2 53 0.0012 18.7 5.1 46 22-68 14-59 (68)
182 PF03672 UPF0154: Uncharacteri 45.6 55 0.0012 18.4 3.7 33 85-117 28-60 (64)
183 PF09068 EF-hand_2: EF hand; 44.8 84 0.0018 20.3 8.4 24 76-99 101-124 (127)
184 PF04282 DUF438: Family of unk 44.1 61 0.0013 18.7 3.7 11 59-69 46-56 (71)
185 PLN00138 large subunit ribosom 44.0 83 0.0018 20.0 4.9 53 75-132 4-56 (113)
186 PF09107 SelB-wing_3: Elongati 43.8 40 0.00088 17.8 2.8 31 18-54 7-37 (50)
187 TIGR01639 P_fal_TIGR01639 Plas 43.6 57 0.0012 18.0 3.7 30 88-117 9-38 (61)
188 PF08414 NADPH_Ox: Respiratory 42.1 83 0.0018 19.5 6.6 61 73-138 31-94 (100)
189 KOG4301|consensus 41.5 51 0.0011 25.3 3.9 62 75-137 113-174 (434)
190 KOG4070|consensus 40.8 31 0.00068 23.1 2.4 69 3-71 10-86 (180)
191 PRK00523 hypothetical protein; 40.2 74 0.0016 18.4 3.6 33 85-117 36-68 (72)
192 PF12486 DUF3702: ImpA domain 40.1 72 0.0016 21.3 4.1 43 59-101 56-98 (148)
193 PF03979 Sigma70_r1_1: Sigma-7 39.2 38 0.00082 19.9 2.5 32 85-118 18-49 (82)
194 COG3763 Uncharacterized protei 38.8 78 0.0017 18.2 3.6 33 85-117 35-67 (71)
195 KOG3449|consensus 37.9 1E+02 0.0023 19.4 5.8 54 7-66 3-56 (112)
196 COG4103 Uncharacterized protei 37.0 69 0.0015 21.3 3.5 59 76-136 34-94 (148)
197 PF09373 PMBR: Pseudomurein-bi 35.3 56 0.0012 15.5 3.2 20 122-141 2-21 (33)
198 PF12419 DUF3670: SNF2 Helicas 35.0 1.3E+02 0.0027 19.8 4.7 49 85-133 80-138 (141)
199 PF08461 HTH_12: Ribonuclease 34.8 71 0.0015 17.9 3.0 34 86-119 11-44 (66)
200 cd06395 PB1_Map2k5 PB1 domain 34.6 81 0.0017 18.7 3.2 44 123-166 21-66 (91)
201 KOG2301|consensus 33.2 29 0.00064 32.3 1.9 68 2-70 1414-1484(1592)
202 PF01885 PTS_2-RNA: RNA 2'-pho 32.7 1.2E+02 0.0025 21.1 4.4 35 82-116 26-60 (186)
203 PRK01844 hypothetical protein; 31.8 1.1E+02 0.0023 17.7 3.6 33 85-117 35-67 (72)
204 PF09336 Vps4_C: Vps4 C termin 31.8 84 0.0018 17.4 3.0 25 88-112 29-53 (62)
205 KOG1264|consensus 29.8 2.2E+02 0.0047 25.2 6.1 63 74-137 146-209 (1267)
206 PRK00819 RNA 2'-phosphotransfe 29.6 1.7E+02 0.0037 20.2 4.8 13 54-66 29-41 (179)
207 PF14277 DUF4364: Domain of un 27.3 1.6E+02 0.0035 20.0 4.3 38 96-138 7-44 (163)
208 PF12943 DUF3839: Protein of u 27.2 54 0.0012 22.4 1.9 27 124-155 137-163 (242)
209 KOG0506|consensus 26.9 2.7E+02 0.0059 22.8 5.9 56 112-168 90-158 (622)
210 cd01612 APG12_C Ubiquitin-like 26.7 1.5E+02 0.0032 17.7 4.1 21 138-160 61-81 (87)
211 COG5562 Phage envelope protein 26.6 68 0.0015 21.0 2.2 48 85-136 53-100 (137)
212 TIGR02613 mob_myst_B mobile my 26.2 1.1E+02 0.0025 21.1 3.5 22 83-104 126-147 (186)
213 PF00690 Cation_ATPase_N: Cati 25.7 1.3E+02 0.0028 16.7 3.3 29 75-103 7-35 (69)
214 PRK08181 transposase; Validate 25.7 2.8E+02 0.006 20.5 5.6 49 86-137 4-52 (269)
215 cd06404 PB1_aPKC PB1 domain is 25.4 1.6E+02 0.0034 17.6 4.1 17 138-154 59-75 (83)
216 PRK03968 DNA primase large sub 25.4 2.5E+02 0.0054 22.1 5.3 71 84-166 117-187 (399)
217 cd08324 CARD_NOD1_CARD4 Caspas 24.6 1.7E+02 0.0036 17.6 6.0 46 18-69 26-71 (85)
218 PF07128 DUF1380: Protein of u 23.5 2E+02 0.0043 19.1 3.9 31 89-119 27-57 (139)
219 cd08327 CARD_RAIDD Caspase act 23.4 1.9E+02 0.004 17.7 6.4 48 18-71 32-79 (94)
220 cd04411 Ribosomal_P1_P2_L12p R 22.7 2E+02 0.0044 17.9 5.4 42 89-135 17-58 (105)
221 PF09312 SurA_N: SurA N-termin 22.7 2.1E+02 0.0045 18.0 4.4 15 102-116 64-78 (118)
222 smart00513 SAP Putative DNA-bi 22.6 1.1E+02 0.0023 14.5 2.4 19 88-106 3-21 (35)
223 TIGR03573 WbuX N-acetyl sugar 22.3 2.2E+02 0.0047 21.9 4.7 37 122-166 300-342 (343)
224 COG5394 Uncharacterized protei 22.0 2.7E+02 0.0059 19.0 5.6 44 51-98 21-64 (193)
225 KOG0455|consensus 21.8 1.3E+02 0.0027 22.4 3.1 35 6-40 179-213 (364)
226 COG1460 Uncharacterized protei 21.7 2.1E+02 0.0046 18.2 3.7 27 90-116 81-107 (114)
227 PF07492 Trehalase_Ca-bi: Neut 21.3 28 0.00061 16.3 -0.2 8 148-155 9-16 (30)
228 PF04558 tRNA_synt_1c_R1: Glut 21.3 63 0.0014 22.0 1.4 45 72-117 85-129 (164)
229 KOG0713|consensus 21.0 1.1E+02 0.0023 23.6 2.7 48 2-51 28-81 (336)
230 PF06384 ICAT: Beta-catenin-in 20.9 1.5E+02 0.0033 17.4 2.7 21 93-113 21-41 (78)
231 PF13551 HTH_29: Winged helix- 20.9 2.1E+02 0.0044 17.2 5.0 29 21-49 80-109 (112)
232 PF02459 Adeno_terminal: Adeno 20.5 2.4E+02 0.0051 23.3 4.6 46 75-120 458-503 (548)
233 PF08355 EF_assoc_1: EF hand a 20.5 1.2E+02 0.0026 17.7 2.3 21 117-137 11-31 (76)
234 PF02761 Cbl_N2: CBL proto-onc 20.1 2.1E+02 0.0047 17.1 4.9 47 20-67 21-67 (85)
No 1
>KOG0037|consensus
Probab=99.97 E-value=1.6e-29 Score=171.38 Aligned_cols=165 Identities=59% Similarity=1.014 Sum_probs=158.8
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHhhhCC
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDR 83 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~~~~~f~~~d~ 83 (171)
-..+...|...|+++.|.|+.+|+.+++....+.+++.+.|+.|+..+|++.+|+|++.||..+|..+..|+.+|+.+|+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 45788999999999999999999999999667889999999999999999999999999999999999999999999999
Q ss_pred CCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH
Q psy17054 84 DNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFL 163 (171)
Q Consensus 84 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g~i~l~~~ef~ 163 (171)
|++|.|+..||+.+|..+|..++++..+.++++++..++|.|.|++|+.++-.++.+.++|+..|+...|.|++++++|+
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~y~dfl 215 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSITISYDDFL 215 (221)
T ss_pred CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccceeEEEeHHHHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy17054 164 DMVFS 168 (171)
Q Consensus 164 ~~~~~ 168 (171)
.+++.
T Consensus 216 ~~t~~ 220 (221)
T KOG0037|consen 216 QMTMS 220 (221)
T ss_pred HHhhc
Confidence 88764
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=145.60 Aligned_cols=133 Identities=26% Similarity=0.426 Sum_probs=123.7
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY-------VTDW 74 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-------~~~~ 74 (171)
.+.++++++|.++|++++|.|+..+|.++++. .+...+..++..++..++. +++.|+|.+|+.++.. .+++
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 35789999999999999999999999999998 5556689999999999999 8899999999999974 3689
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
..+|+.||.+++|+|+..++..+++.+|..+++++++.+++.++.+++|.|+|++|+..+..
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999997753
No 3
>KOG0027|consensus
Probab=99.92 E-value=1e-23 Score=141.04 Aligned_cols=133 Identities=32% Similarity=0.462 Sum_probs=123.6
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-----------
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV----------- 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~----------- 71 (171)
+..+++++|..+|.+++|.|+..++..+++.++ ..++..++..++..+|.+++|.|++.+|+.++...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 467899999999999999999999999999954 44589999999999999999999999999988732
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
..+..+|+.||.+++|+|+..||+.++..+|...+.+++..++..++.+++|.|+|++|+.++..
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 27899999999999999999999999999999999999999999999999999999999998863
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.87 E-value=9.4e-21 Score=126.25 Aligned_cols=133 Identities=26% Similarity=0.430 Sum_probs=120.5
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-------HHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV-------TDWQ 75 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~-------~~~~ 75 (171)
+.+++++.|..+|.+++|.|+..+|..++..+ +.+.+...++.+++.++.+++|.|++++|+.++... ..+.
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 46788999999999999999999999999874 444568899999999999999999999999987642 4688
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
.+|..+|.+++|.|+..++..++..+|.+++.+.+..++..++.+++|.|+|++|+.++..
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999999999998899999999999999999999999999988753
No 5
>KOG0028|consensus
Probab=99.87 E-value=7.4e-21 Score=123.18 Aligned_cols=133 Identities=28% Similarity=0.461 Sum_probs=123.5
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY-------VTDWQ 75 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-------~~~~~ 75 (171)
|..+++..|..+|.++.|+|++.+|..++++++..+ ..+++..++..+|+++.|.|+|++|...++. ...+.
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 457899999999999999999999999999965555 7889999999999999999999999998764 36899
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
.+|+.+|-|++|.|+..+|.++...+|..++++++.+++..++.+++|.|+-++|..++..
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999998863
No 6
>PTZ00183 centrin; Provisional
Probab=99.87 E-value=1.1e-20 Score=127.25 Aligned_cols=134 Identities=27% Similarity=0.396 Sum_probs=121.6
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-------HHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV-------TDW 74 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~-------~~~ 74 (171)
.+.++++++|..+|.+++|.|+..+|..+++.+ +.+.+...+..++..+|.+++|.|++.+|...+... ..+
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 356789999999999999999999999999975 444578889999999999999999999999877642 478
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
..+|..+|.+++|.|+..+|..++..+|..++...+..++..++.+++|.|++++|..++..
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999998864
No 7
>KOG0030|consensus
Probab=99.84 E-value=1.1e-19 Score=115.15 Aligned_cols=133 Identities=25% Similarity=0.396 Sum_probs=118.2
Q ss_pred CCcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHH-------
Q psy17054 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKH--NRGSITFEDFGALWKYV------- 71 (171)
Q Consensus 1 ~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~--~~g~v~~~eF~~~~~~~------- 71 (171)
+.+.++++++|.+||..++|.|+..+...++|.++.+| ++.++.+.+....++ +-..++|++|+.++..+
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 35678999999999999999999999999999976665 788888889888776 44689999999999764
Q ss_pred --HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 72 --TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 72 --~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
+......+.||++++|.|...|++++|.++|..+++++++.++.... +.+|.|+|+.|++.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 46788899999999999999999999999999999999999999875 5589999999998764
No 8
>KOG0031|consensus
Probab=99.80 E-value=5.8e-18 Score=109.09 Aligned_cols=129 Identities=25% Similarity=0.368 Sum_probs=118.8
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-------HHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV-------TDW 74 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~-------~~~ 74 (171)
.|..+++++|..+|.|++|.|+.++++..+.++ +.+.+.+++..++.... |.|||.-|++++... ..+
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~----gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAP----GPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 367899999999999999999999999999995 55579999999998765 899999999998643 578
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
..+|..||.+++|.|..+.++.+|...|..++++++..++..+-.+..|.++|..|+..+.
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998999999999999876
No 9
>KOG0044|consensus
Probab=99.77 E-value=4.2e-17 Score=111.34 Aligned_cols=145 Identities=20% Similarity=0.359 Sum_probs=121.3
Q ss_pred cHHHHHHHHhhcCCC-CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHH
Q psy17054 3 SREFLWNIFQGVDRD-RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQ 75 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~~~~ 75 (171)
+..+++++|+.|-.+ ++|.++..+|++++...+...-+..-++.+|+.+|.+++|.|+|.||+..++.. +.+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 356778888888655 699999999999999865544456777889999999999999999999988754 5788
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTF----GY-------RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAF 144 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f 144 (171)
.+|+++|.+++|.|+..|+..++..+ |. ....+.+..+|+.+|.|+||.|++++|.....+-+.+..+.
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l 183 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRAL 183 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHh
Confidence 89999999999999999998888764 32 12456688999999999999999999999999988888777
Q ss_pred hhc
Q psy17054 145 RSY 147 (171)
Q Consensus 145 ~~~ 147 (171)
..+
T Consensus 184 ~~~ 186 (193)
T KOG0044|consen 184 EQD 186 (193)
T ss_pred hhc
Confidence 554
No 10
>KOG0034|consensus
Probab=99.72 E-value=3.1e-16 Score=106.99 Aligned_cols=135 Identities=25% Similarity=0.446 Sum_probs=111.1
Q ss_pred cHHHHHHHHhhcCCC-CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHH-------HH
Q psy17054 3 SREFLWNIFQGVDRD-RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGS-ITFEDFGALWKYV-------TD 73 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~-v~~~eF~~~~~~~-------~~ 73 (171)
+.+.+...|..++++ +.|.++.+||..+... ..+| -..++++.++.+++|. |++++|+..++.. .+
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-ALNP----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHH-hcCc----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 567889999999999 9999999999999953 4444 3467788888887777 9999999988742 48
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCC--HH----HHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLS--DR----MIGTMLKKFDRFGRGTILFDDFIQCCITLYALTS 142 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~ 142 (171)
+.-+|+.||.+++|.|+.+|+.+++..+ +...+ ++ .++.++..+|.++||+|+++||++++...+.+.+
T Consensus 106 l~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~ 181 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLE 181 (187)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHH
Confidence 8999999999999999999999999887 33333 33 3566788899999999999999999987655543
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=103.11 Aligned_cols=125 Identities=19% Similarity=0.372 Sum_probs=103.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHH
Q psy17054 42 ETVRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIGTML 114 (171)
Q Consensus 42 ~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~ 114 (171)
++++..|..+|++++|.|++.++..+++.+ ..+..++..+|. +.|.|+..+|..++... ...-+++++...|
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 455667778899999999999999888643 578888999988 88999999998888775 3456688899999
Q ss_pred HhhCCCCCCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 115 KKFDRFGRGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 115 ~~~d~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
+.+|.+++|.|+..++..++..+ +++...++.+|++++|.| ++++|...+..-
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i--~~~eF~~~~~~~ 157 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEI--DYEEFKKLIKDS 157 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceE--eHHHHHHHHhcc
Confidence 99999999999999999999888 567888999999999995 889998877653
No 12
>KOG0036|consensus
Probab=99.69 E-value=1e-15 Score=113.10 Aligned_cols=152 Identities=21% Similarity=0.395 Sum_probs=131.6
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHHHHHHhhhC
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY-VTDWQNCFRSFD 82 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-~~~~~~~f~~~d 82 (171)
..+++..|+.+|.+++|.++..++.+.+..+.......+..+.+++..|.+.+|.|+|+||...+.. -.++..+|...|
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 4578899999999999999999999999885444467889999999999999999999999998874 457889999999
Q ss_pred CCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH--HHHHHHH---h---hcCCCCCCe
Q psy17054 83 RDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL--YALTSAF---R---SYDTDQDGV 154 (171)
Q Consensus 83 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~--~~~~~~f---~---~~d~~~~g~ 154 (171)
.+++|.|...|+.+.|+.+|..++++++.++++..|.++.+.|+++||..++... ..+..+| + .+|.+.+..
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~~idigE~~~ 172 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVLLIDIGEDAV 172 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhheEEEcccccc
Confidence 9999999999999999999999999999999999999999999999999998754 2333332 2 247777766
Q ss_pred e
Q psy17054 155 I 155 (171)
Q Consensus 155 i 155 (171)
|
T Consensus 173 i 173 (463)
T KOG0036|consen 173 L 173 (463)
T ss_pred C
Confidence 4
No 13
>PTZ00183 centrin; Provisional
Probab=99.69 E-value=4.1e-15 Score=100.01 Aligned_cols=129 Identities=22% Similarity=0.333 Sum_probs=110.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHH
Q psy17054 41 PETVRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIGTM 113 (171)
Q Consensus 41 ~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~ 113 (171)
..++..+|..+|.+++|.|+..+|..++..+ ..+..+|..+|.+++|.|+..+|..++... ......+.+..+
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3566778889999999999999999888743 467899999999999999999999988764 334566788999
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhccC
Q psy17054 114 LKKFDRFGRGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSLKI 171 (171)
Q Consensus 114 ~~~~d~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~~ 171 (171)
|+.+|.+++|.|+..+|..++... ..+..+|+.+|.+++|.| ++++|..++..-|+
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEI--SEEEFYRIMKKTNL 157 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHhcccC
Confidence 999999999999999999999864 568889999999999995 88999999987664
No 14
>KOG0027|consensus
Probab=99.69 E-value=6.3e-16 Score=103.38 Aligned_cols=93 Identities=31% Similarity=0.567 Sum_probs=45.2
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH-----------HHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL-----------YALT 141 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~-----------~~~~ 141 (171)
.+..+|..||++++|.|+..++..+++.+|..++..++..++..++.+++|.|++.+|+.++... ..++
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~ 88 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELK 88 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHH
Confidence 34444555555555555555555555555544555555555555555555555555555544432 1444
Q ss_pred HHHhhcCCCCCCeeeeeHHHHHHHHh
Q psy17054 142 SAFRSYDTDQDGVITIHYEQFLDMVF 167 (171)
Q Consensus 142 ~~f~~~d~~~~g~i~l~~~ef~~~~~ 167 (171)
.+|+.||++++|.| |.+|+..++.
T Consensus 89 eaF~~fD~d~~G~I--s~~el~~~l~ 112 (151)
T KOG0027|consen 89 EAFRVFDKDGDGFI--SASELKKVLT 112 (151)
T ss_pred HHHHHHccCCCCcC--cHHHHHHHHH
Confidence 45555555555553 3344444443
No 15
>KOG4223|consensus
Probab=99.64 E-value=3.1e-15 Score=107.58 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=133.5
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH------------
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY------------ 70 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~------------ 70 (171)
..+++.+++..+|.+++|.|+..++..++.. ........+..+-+..++.+.+|.|+++++......
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~-s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQ-SQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 4678999999999999999999999999886 333334566777788999999999999999876542
Q ss_pred --------HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH---
Q psy17054 71 --------VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR-LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY--- 138 (171)
Q Consensus 71 --------~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~--- 138 (171)
+.+-+.-|..-|.|++|.++.+||..+|..-..+ +.+-.+.+.+...|.|++|.|+++||+.-|....
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~ 233 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNE 233 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCC
Confidence 2355788999999999999999999999776543 6667788899999999999999999999887642
Q ss_pred --------HHHHHHhhcCCCCCCeeeeeHHHHHHHHhh
Q psy17054 139 --------ALTSAFRSYDTDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 139 --------~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~ 168 (171)
+-...+...|+++||+ |+.+|...++++
T Consensus 234 ~epeWv~~Ere~F~~~~DknkDG~--L~~dEl~~WI~P 269 (325)
T KOG4223|consen 234 EEPEWVLTEREQFFEFRDKNKDGK--LDGDELLDWILP 269 (325)
T ss_pred CCcccccccHHHHHHHhhcCCCCc--cCHHHHhcccCC
Confidence 2335566679999999 688998887754
No 16
>KOG0044|consensus
Probab=99.63 E-value=5.8e-14 Score=96.03 Aligned_cols=145 Identities=20% Similarity=0.391 Sum_probs=119.5
Q ss_pred CCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHH-------HHHHHHHhhhCCCCCccee
Q psy17054 19 SGFISADELQHALSNGTWTPFNPETVRLMIGMFDKH-NRGSITFEDFGALWKYV-------TDWQNCFRSFDRDNSGNID 90 (171)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~-~~g~v~~~eF~~~~~~~-------~~~~~~f~~~d~~~~g~i~ 90 (171)
+..++.+.+..+.+. ...+..+++.+.+.+-.+ .+|.++-++|..++... .-...+|+.||.+++|.|+
T Consensus 6 ~~~~~~~~~e~l~~~---t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~ 82 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQ---TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTID 82 (193)
T ss_pred cccCCcHHHHHHHHh---cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcC
Confidence 334455555555543 456789999999988665 58999999999988743 3568899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH-----------------HHHHHHhhcCCCCCC
Q psy17054 91 KSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY-----------------ALTSAFRSYDTDQDG 153 (171)
Q Consensus 91 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~-----------------~~~~~f~~~d~~~~g 153 (171)
..||..+++.......++.+..+|+.||.+++|.|++.|++.++..+- ....+|+.+|.++||
T Consensus 83 F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg 162 (193)
T KOG0044|consen 83 FLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDG 162 (193)
T ss_pred HHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCC
Confidence 999999998886667777888999999999999999999999998762 345789999999999
Q ss_pred eeeeeHHHHHHHHhh
Q psy17054 154 VITIHYEQFLDMVFS 168 (171)
Q Consensus 154 ~i~l~~~ef~~~~~~ 168 (171)
.+ |.+||.+....
T Consensus 163 ~l--T~eef~~~~~~ 175 (193)
T KOG0044|consen 163 KL--TLEEFIEGCKA 175 (193)
T ss_pred cc--cHHHHHHHhhh
Confidence 95 77999987654
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.63 E-value=4.9e-14 Score=93.72 Aligned_cols=124 Identities=27% Similarity=0.450 Sum_probs=106.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHH
Q psy17054 42 ETVRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIGTML 114 (171)
Q Consensus 42 ~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~ 114 (171)
+.+...|..+|.+++|.|++++|..++..+ ..+..+|..+|.+++|.|+.++|..++... ......+.+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 456678888999999999999999887643 368899999999999999999999988764 3334556788999
Q ss_pred HhhCCCCCCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHh
Q psy17054 115 KKFDRFGRGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVF 167 (171)
Q Consensus 115 ~~~d~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~ 167 (171)
..+|.+++|.|+.++|..++... ..+..+|+.+|.+++|.| +++||+.++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~ 147 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI--NYEEFVKMMM 147 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcC--cHHHHHHHHh
Confidence 99999999999999999999765 567889999999999995 8899998875
No 18
>KOG0028|consensus
Probab=99.50 E-value=5.8e-13 Score=86.75 Aligned_cols=126 Identities=20% Similarity=0.328 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH------HHHHHHHHHhhhCCCCCcceeHHHHHHHHHH-cCCCCCHHHHHHHH
Q psy17054 42 ETVRLMIGMFDKHNRGSITFEDFGALWK------YVTDWQNCFRSFDRDNSGNIDKSELSAALTT-FGYRLSDRMIGTML 114 (171)
Q Consensus 42 ~~~~~~~~~~d~~~~g~v~~~eF~~~~~------~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~ 114 (171)
++++..|..++.+++|.+++.++-..+. ....+..+..-+|+++.|.|+.++|.+.+.. ++..-+.+++..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 5677888999999999999999944443 2467888899999999999999999998655 46666999999999
Q ss_pred HhhCCCCCCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 115 KKFDRFGRGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 115 ~~~d~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
+.+|.+++|.||..+|++.+..+ +++......+|.+++|-| +.+||.+++...
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgev--neeEF~~imk~t 171 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEV--NEEEFIRIMKKT 171 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccc--cHHHHHHHHhcC
Confidence 99999999999999999999988 368888899999999995 889999998754
No 19
>KOG0034|consensus
Probab=99.46 E-value=8e-12 Score=85.47 Aligned_cols=130 Identities=23% Similarity=0.352 Sum_probs=106.3
Q ss_pred CCHHHHH---HHHHhhCCC-CCCcccHHHHHHHHHHH--HHHHHHHhhhCCCCCcc-eeHHHHHHHHHHcCCCCCH-HHH
Q psy17054 39 FNPETVR---LMIGMFDKH-NRGSITFEDFGALWKYV--TDWQNCFRSFDRDNSGN-IDKSELSAALTTFGYRLSD-RMI 110 (171)
Q Consensus 39 ~~~~~~~---~~~~~~d~~-~~g~v~~~eF~~~~~~~--~~~~~~f~~~d~~~~g~-i~~~el~~~l~~~~~~~~~-~~~ 110 (171)
++..++. ..|.+++++ ++|.++.++|..+.... .-..++++.++.+++|. |++++|.+.+......-.. +.+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 4555544 455677888 89999999999987433 35678999999999999 9999999999997554333 478
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHH------------H-HHHHHHhhcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 111 GTMLKKFDRFGRGTILFDDFIQCCITL------------Y-ALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 111 ~~~~~~~d~~~~g~i~~~eF~~~l~~~------------~-~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
.-+++.||.+++|.|+.+++..++..+ . -....+..+|.++||.| +++||.+++...|
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I--sfeEf~~~v~~~P 177 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI--SFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHcCc
Confidence 889999999999999999999999875 1 13468999999999996 7799999998775
No 20
>KOG0037|consensus
Probab=99.44 E-value=2.2e-12 Score=88.32 Aligned_cols=97 Identities=31% Similarity=0.415 Sum_probs=81.5
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhhcCC
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFG-YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDT 149 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~ 149 (171)
...+...|...|++++|.|+.+|+.++|...+ .+.+.+-+..|+..+|.+..|.|++.||..++..+++.+.+|+.+|.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566778899999999999999999988653 45788888899999999999999999999999999999999999999
Q ss_pred CCCCeeeeeHHHHHHHHhhc
Q psy17054 150 DQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 150 ~~~g~i~l~~~ef~~~~~~~ 169 (171)
|++|+| +..|+...+..+
T Consensus 136 D~SG~I--~~sEL~~Al~~~ 153 (221)
T KOG0037|consen 136 DRSGTI--DSSELRQALTQL 153 (221)
T ss_pred CCCCcc--cHHHHHHHHHHc
Confidence 999996 668888777543
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1e-12 Score=79.45 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhCC-CCCcceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFDR-DNSGNIDKSELSAALTT-FGYRLSD-RMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 70 ~~~~~~~~f~~~d~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.+..+..+|+.||+ +++|.|+..||+.++.. +|..++. +++..+++.+|.|++|.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35678899999999 99999999999999999 8877887 899999999999999999999999999876
No 22
>KOG0031|consensus
Probab=99.41 E-value=1e-11 Score=80.44 Aligned_cols=95 Identities=23% Similarity=0.455 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH-------HHHH
Q psy17054 69 KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL-------YALT 141 (171)
Q Consensus 69 ~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~-------~~~~ 141 (171)
.+++++.++|..+|++++|.|.+++|+.++..+|...+++++..+++.. .|-|+|--|+.++... ..|.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 4678999999999999999999999999999999999999999999985 7789999999999764 5689
Q ss_pred HHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 142 SAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 142 ~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
.+|+.||.+++|+| ..+.+.+++.++
T Consensus 105 ~AF~~FD~~~~G~I--~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKI--DEDYLRELLTTM 130 (171)
T ss_pred HHHHhcCccCCCcc--CHHHHHHHHHHh
Confidence 99999999999996 667788877654
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=3.3e-12 Score=73.44 Aligned_cols=62 Identities=37% Similarity=0.697 Sum_probs=53.5
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHH----HHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRM----IGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
++..+|..+|.+++|.|+.+||..++..++...+.+. +..++..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4688999999999999999999999999987665544 4555999999999999999999875
No 24
>KOG0030|consensus
Probab=99.35 E-value=2e-11 Score=77.78 Aligned_cols=97 Identities=19% Similarity=0.380 Sum_probs=85.6
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCceeHHHHHHHHHHH---------HH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF--GRGTILFDDFIQCCITL---------YA 139 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF~~~l~~~---------~~ 139 (171)
+..+..+|..||..++|.|+..++-.+|+++|..+|+.++.+.+..+..+ +-..|+|++|+.++..+ ++
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 46788999999999999999999999999999999999999999998876 34689999999999887 45
Q ss_pred HHHHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 140 LTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 140 ~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
.....+.||++++|.| ...|+.+++.++
T Consensus 90 fvegLrvFDkeg~G~i--~~aeLRhvLttl 117 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTI--MGAELRHVLTTL 117 (152)
T ss_pred HHHHHHhhcccCCcce--eHHHHHHHHHHH
Confidence 7788899999999996 779999998765
No 25
>PLN02964 phosphatidylserine decarboxylase
Probab=99.34 E-value=2.1e-11 Score=97.10 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=82.0
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHH------H
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPET---VRLMIGMFDKHNRGSITFEDFGALWKYV------T 72 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~ 72 (171)
+|.+++++.|..+|++++|.+ +..+++.++....+..+ ++.++..+|.+++|.|+++||+.++..+ +
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 467889999999999999987 88888886522334544 7999999999999999999999988753 4
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTT 100 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~ 100 (171)
.+..+|+.+|.+++|.|+.+||..++..
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 6899999999999999999999999988
No 26
>KOG2643|consensus
Probab=99.34 E-value=1.9e-11 Score=91.40 Aligned_cols=160 Identities=19% Similarity=0.304 Sum_probs=112.5
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHhcC------C---------CCCCCHHHHHHHH-HhhCCCCCCcccHHHHHHHHH
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALSNG------T---------WTPFNPETVRLMI-GMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~------~---------~~~~~~~~~~~~~-~~~d~~~~g~v~~~eF~~~~~ 69 (171)
.++-+|+.+|.|+||.|+.+||.++..-. + +..........+. ..+..++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 34567999999999999999998876311 0 0011111122222 246888999999999999998
Q ss_pred HHH--HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCH---HHHHHHHHhhCCCCCCceeHHHHHHHHHHHHH-----
Q psy17054 70 YVT--DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSD---RMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----- 139 (171)
Q Consensus 70 ~~~--~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~---~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~----- 139 (171)
.++ -+.--|..+|+..+|.|+..+|...+-.+....+. ..+..+-+.+... +-.|+++||..+..-+.+
T Consensus 314 ~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd 392 (489)
T KOG2643|consen 314 NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFD 392 (489)
T ss_pred HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHH
Confidence 764 34556999999999999999999988665322111 2334455555543 556898888887765411
Q ss_pred ----------------------------------HHHHHhhcCCCCCCeeeeeHHHHHHHHhh
Q psy17054 140 ----------------------------------LTSAFRSYDTDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 140 ----------------------------------~~~~f~~~d~~~~g~i~l~~~ef~~~~~~ 168 (171)
+.-+|+.||.|+||. |+..||+.++..
T Consensus 393 ~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~--LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 393 IALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGT--LSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCc--ccHHHHHHHHHH
Confidence 224789999999999 699999999853
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=2.6e-11 Score=73.38 Aligned_cols=68 Identities=16% Similarity=0.366 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhC-CCCCc-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFD-RDNSG-NIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 70 ~~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
-+..+..+|+.|| ++++| .|+..+|..++.. +|...+++++..+++.+|.+++|.|+|++|+.++..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3567889999998 79999 6999999999999 8888999999999999999999999999999988765
No 28
>PLN02964 phosphatidylserine decarboxylase
Probab=99.30 E-value=2.8e-11 Score=96.42 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHHH------HH
Q psy17054 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFG-YRLSDRM---IGTMLKKFDRFGRGTILFDDFIQCCITL------YA 139 (171)
Q Consensus 70 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~eF~~~l~~~------~~ 139 (171)
....+..+|..+|++++|.+ +..++..+| ..+++++ +..+++.+|.+++|.|+++||+.++..+ ++
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 55788999999999999997 888888889 4788876 7999999999999999999999999875 46
Q ss_pred HHHHHhhcCCCCCCeeeeeHHHHHHHHhh
Q psy17054 140 LTSAFRSYDTDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 140 ~~~~f~~~d~~~~g~i~l~~~ef~~~~~~ 168 (171)
+..+|+.+|.+++|.| +.+||..++..
T Consensus 217 L~eaFk~fDkDgdG~I--s~dEL~~vL~~ 243 (644)
T PLN02964 217 KEELFKAADLNGDGVV--TIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCcC--CHHHHHHHHHh
Confidence 8999999999999995 77999998876
No 29
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.29 E-value=1.5e-11 Score=70.68 Aligned_cols=62 Identities=29% Similarity=0.491 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNP----ETVRLMIGMFDKHNRGSITFEDFGALW 68 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~~d~~~~g~v~~~eF~~~~ 68 (171)
+++++|..+|.+++|.|+.+||..+++.+ ..+.++ +.++.+++.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999984 433334 445556999999999999999998864
No 30
>KOG4223|consensus
Probab=99.29 E-value=2e-11 Score=88.19 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=103.3
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-----------HHH
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY-----------VTD 73 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-----------~~~ 73 (171)
.+=++.|+..|.|++|.++.+||-.++..--.....+-.++.-+...|.|++|+|+++||+.-+.. +..
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 455688999999999999999999888752222233445566667789999999999999985532 234
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 133 (171)
-++.+...|+|++|+++..|+..-+-.-+......++..++...|.|++|+||++|.+.-
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 567888889999999999999977766666677788999999999999999999998764
No 31
>KOG0751|consensus
Probab=99.26 E-value=1.6e-10 Score=87.80 Aligned_cols=164 Identities=18% Similarity=0.355 Sum_probs=124.1
Q ss_pred CcHHHHHHHHhhcC---CCCCCcccHHHHHHHHhcCCCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH----HH
Q psy17054 2 PSREFLWNIFQGVD---RDRSGFISADELQHALSNGTWTP-FNPETVRLMIGMFDKHNRGSITFEDFGALWKYV----TD 73 (171)
Q Consensus 2 ~~~~~~~~~F~~~d---~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~----~~ 73 (171)
++.++++.+|..+. .++...++.++|..-.-.+...+ ..++.++-+-...|..++|.|+|+||..+-..+ ..
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal 109 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDAL 109 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHH
Confidence 46788888887774 34555799999987655544444 445555555567788889999999999865432 35
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCC------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH--HHHHHHHh
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGY------RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL--YALTSAFR 145 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~--~~~~~~f~ 145 (171)
.+.+|..||+.++|.++.+++..++..... .++.+.+...| .......++|.+|.+++... ++-+++|+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988643 24444444433 33446679999999999875 56789999
Q ss_pred hcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 146 SYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 146 ~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
..|+.++|.|+ --+|..++++++
T Consensus 187 ~~d~~~ng~is--~Ldfq~imvt~~ 209 (694)
T KOG0751|consen 187 EKDKAKNGFIS--VLDFQDIMVTIR 209 (694)
T ss_pred HhcccCCCeee--eechHhhhhhhh
Confidence 99999999974 488999988765
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.26 E-value=7.6e-11 Score=71.36 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhCC-CC-CcceeHHHHHHHHH---HcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFDR-DN-SGNIDKSELSAALT---TFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY 138 (171)
Q Consensus 70 ~~~~~~~~f~~~d~-~~-~g~i~~~el~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 138 (171)
.+..+..+|..|+. ++ +|.|+.+||+.++. .+|..++++++.++++..|.+++|.|+|.+|+.++..+.
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 45567889999998 67 89999999999997 368889999999999999999999999999999988763
No 33
>KOG0038|consensus
Probab=99.25 E-value=7.4e-11 Score=75.89 Aligned_cols=121 Identities=21% Similarity=0.392 Sum_probs=93.5
Q ss_pred cccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH-------HHHHHHhhhCCCCCcceeHHH
Q psy17054 21 FISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT-------DWQNCFRSFDRDNSGNIDKSE 93 (171)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~-------~~~~~f~~~d~~~~g~i~~~e 93 (171)
.+.++.+.+.-. +..+|+ -+++...++.+|.|.+++++|+.+++.+. ++.-+|+.+|-++++.|...+
T Consensus 55 ~vp~e~i~kMPE-Lkenpf----k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~D 129 (189)
T KOG0038|consen 55 KVPFELIEKMPE-LKENPF----KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDD 129 (189)
T ss_pred eecHHHHhhChh-hhcChH----HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHH
Confidence 355555544332 122332 35677788899999999999999987654 446689999999999999999
Q ss_pred HHHHHHHcCC-CCCHHHH----HHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhh
Q psy17054 94 LSAALTTFGY-RLSDRMI----GTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRS 146 (171)
Q Consensus 94 l~~~l~~~~~-~~~~~~~----~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~ 146 (171)
+...+..+.. .++++++ ++++..+|.+|+|++++.+|...+.+-+.....|++
T Consensus 130 L~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 130 LEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhee
Confidence 9999999843 4777664 567888999999999999999999887777766653
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.24 E-value=3.6e-11 Score=72.75 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=60.2
Q ss_pred cHHHHHHHHhhcCC-CCCCcccHHHHHHHHhcCCCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDR-DRSGFISADELQHALSNGTWTPFNP-ETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~-~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
....+.++|..||+ +++|.|+..||+.++.+..+..++. .+++.+++.+|.|++|.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678999999999 9999999999999999822344566 899999999999999999999999988765
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=2.6e-10 Score=69.85 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhC-CCCCc-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFD-RDNSG-NIDKSELSAALTT-FG----YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA 143 (171)
Q Consensus 71 ~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~ 143 (171)
...+..+|..|| .+++| .|+..++..++.. +| ..++.+.+..++..+|.+++|.|+|++|+.++..+......
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 457889999997 99999 5999999999985 44 34688999999999999999999999999999876544433
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.19 E-value=3.4e-10 Score=69.58 Aligned_cols=71 Identities=14% Similarity=0.313 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhCC-CC-CcceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDR-DN-SGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALT 141 (171)
Q Consensus 71 ~~~~~~~f~~~d~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 141 (171)
...+..+|..+|. ++ +|.|+..|+..++.. +|..++.+++..++..++.+++|.|+|++|+.++..+.-..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4578899999997 87 699999999999986 46678999999999999999999999999999998764433
No 37
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=3.8e-10 Score=69.15 Aligned_cols=69 Identities=13% Similarity=0.294 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhC-CCCCc-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFD-RDNSG-NIDKSELSAALTTF-----GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY 138 (171)
Q Consensus 70 ~~~~~~~~f~~~d-~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 138 (171)
-+..+..+|+.|| .+++| .|+..||..++... +...++..+..++..+|.+++|.|+|++|+.++..+-
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4567788999999 78998 59999999999762 3345778999999999999999999999999998763
No 38
>KOG0377|consensus
Probab=99.18 E-value=7.5e-10 Score=83.24 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=104.7
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH--------------
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK-------------- 69 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~-------------- 69 (171)
...+.+.|..+|..++|.|+......++..+.+..++=..+.. ..+....+|.|.|.+-...+.
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 3567788999999999999999999999875444433222221 123445667888888766543
Q ss_pred ----HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHH
Q psy17054 70 ----YVTDWQNCFRSFDRDNSGNIDKSELSAALTTF----GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA 139 (171)
Q Consensus 70 ----~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 139 (171)
....++.+|+.+|+|++|.|+.+||..+++-+ ..+.+...+.++.+..|.|+||.|++.||+.+++.+..
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 23467899999999999999999999988765 45688899999999999999999999999998876543
No 39
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.18 E-value=2.4e-10 Score=69.16 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred cHHHHHHHHhhcC-CCCCC-cccHHHHHHHHhc----CCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVD-RDRSG-FISADELQHALSN----GTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~----~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
....++++|..+| ++++| .|+..+|+.+++. ..+...++.++..+++.+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568999999998 79999 5999999999997 23445688999999999999999999999999887654
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=2.6e-10 Score=62.75 Aligned_cols=52 Identities=33% Similarity=0.639 Sum_probs=49.2
Q ss_pred CCcceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 85 NSGNIDKSELSAALTTFGYR-LSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
++|.|+.++|..++..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999875
No 41
>KOG0036|consensus
Probab=99.16 E-value=5.4e-10 Score=83.28 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHH
Q psy17054 41 PETVRLMIGMFDKHNRGSITFEDFGALWKY-------VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113 (171)
Q Consensus 41 ~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-------~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 113 (171)
...++.+|..+|.+++|.++..+....+.. .+....+|...|.+++|.++.+||.+.+.. .+.++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 456778899999999999999988766543 246778899999999999999999988876 34567788
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 114 LKKFDRFGRGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 114 ~~~~d~~~~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
|...|.++||+|+..|..+++..+ ++....|...|+++++.| +.+||.+.++-.|
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I--~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATI--DLEEWRDHLLLYP 148 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeee--ccHHHHhhhhcCC
Confidence 889999999999999999988876 566778888899999997 4588988877655
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.14 E-value=9.9e-10 Score=67.80 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALT 141 (171)
Q Consensus 70 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 141 (171)
....+..+|..+|.+++|.|+..++..++...| ++.+++..++..++.+++|.|+|++|+.++..+....
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999976 6788899999999999999999999999998875544
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=3.1e-10 Score=70.09 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=63.0
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQN 76 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~~~~ 76 (171)
+...++++|..+|.+++|.|+..++..+++.. .++.+++..+++.++.+++|.|++++|+.++..+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999983 357889999999999999999999999999887765544
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=5.3e-10 Score=64.21 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=56.3
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY 138 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 138 (171)
+.+|..+|.+++|.|+.+|+..++..+|. +.+.+..++..++.+++|.|+|.+|+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999874 788899999999999999999999999987653
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.09 E-value=1.4e-09 Score=65.98 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhCC--CCCcceeHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFDR--DNSGNIDKSELSAALTT-FGYR----LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 70 ~~~~~~~~f~~~d~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.+..+..+|..+|+ +++|.|+..++..++.. +|.+ .+.+.+..++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 45678889999999 89999999999999976 4543 358899999999999999999999999999865
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=1e-09 Score=67.28 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcC-CCCCC-cccHHHHHHHHhcCC----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q psy17054 4 REFLWNIFQGVD-RDRSG-FISADELQHALSNGT----WTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT 72 (171)
Q Consensus 4 ~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~ 72 (171)
...+.++|..|| .+++| .|+..||+.+++... ....++.++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 467888899999 77998 599999999997622 2233678999999999999999999999999887653
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.07 E-value=7.9e-10 Score=67.13 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=59.8
Q ss_pred CcHHHHHHHHhhcCC--CCCCcccHHHHHHHHhcCCCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 2 PSREFLWNIFQGVDR--DRSGFISADELQHALSNGTWTP----FNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~--~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
.+.+.++++|..+|. +++|.|+..++..+++...+.+ .+..++..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456789999999999 8999999999999997522222 358899999999999999999999999988755
No 48
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.07 E-value=1.9e-09 Score=65.96 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=60.7
Q ss_pred cHHHHHHHHhhcC-CCCCC-cccHHHHHHHHhc-CCC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVD-RDRSG-FISADELQHALSN-GTW---TPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQ 75 (171)
Q Consensus 3 ~~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-~~~---~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~~~ 75 (171)
..+.++++|..+| .+++| .|+..+++.+++. ++. ...+.++++.+++.+|.+++|.|+|++|+.++..+....
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3578999999997 99999 5999999999975 321 134788999999999999999999999999887654443
No 49
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.06 E-value=2.1e-09 Score=65.20 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=58.5
Q ss_pred HHHHHHHHHhh-hCCCCCc-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRS-FDRDNSG-NIDKSELSAALTTF-----GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 70 ~~~~~~~~f~~-~d~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.+..+..+|.. +|.+++| .|+.+||..++... +...++.++..+++.+|.|++|.|+|++|+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35677889999 6788876 99999999999885 335677889999999999999999999999988876
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.04 E-value=2e-09 Score=61.73 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT 72 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~ 72 (171)
++++|..+|.+++|.|+..++..+++..+ .+.++++.++..++.+++|.|++++|+.++....
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 36789999999999999999999998842 3788999999999999999999999999886543
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.03 E-value=2.6e-09 Score=59.83 Aligned_cols=61 Identities=38% Similarity=0.690 Sum_probs=56.7
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
+..+|..+|.+++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 52
>KOG2643|consensus
Probab=99.03 E-value=2e-09 Score=80.78 Aligned_cols=116 Identities=24% Similarity=0.474 Sum_probs=88.5
Q ss_pred CCCCCCcccHHHHHHHHHHHH----HHHHHHhhhCCCCCcceeHHHHHHHHHHc------CC----------CCCHHHHH
Q psy17054 52 DKHNRGSITFEDFGALWKYVT----DWQNCFRSFDRDNSGNIDKSELSAALTTF------GY----------RLSDRMIG 111 (171)
Q Consensus 52 d~~~~g~v~~~eF~~~~~~~~----~~~~~f~~~d~~~~g~i~~~el~~~l~~~------~~----------~~~~~~~~ 111 (171)
+.+.+|-|+|.||+-+++.+. ....+|.+||.|++|.|+.+||..+.+-. |. ....+.-.
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns 288 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS 288 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence 456779999999998888664 56789999999999999999998877432 11 11111112
Q ss_pred HHH-HhhCCCCCCceeHHHHHHHHHHHHH--HHHHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 112 TML-KKFDRFGRGTILFDDFIQCCITLYA--LTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 112 ~~~-~~~d~~~~g~i~~~eF~~~l~~~~~--~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
.+. .-+..++++++++++|+.++..++. +.--|..+|...+|.| ++.+|-.+++..
T Consensus 289 aL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~I--se~DFA~~lL~~ 347 (489)
T KOG2643|consen 289 ALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAI--SEVDFAELLLAY 347 (489)
T ss_pred hHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCccccccc--CHHHHHHHHHHH
Confidence 222 2357889999999999999999864 3446999999999996 889999988765
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=3.2e-09 Score=59.70 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=57.3
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTFGY-RLSDRMIGTMLKKFDRFGR-GTILFDDFIQCCIT 136 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 136 (171)
.+|..||.++.|.|...++...|++++. .+++.+++.+.+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 8999999999999999988 99999999999874
No 54
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.01 E-value=3.7e-09 Score=64.01 Aligned_cols=68 Identities=12% Similarity=0.263 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCC-CC-CCcccHHHHHHHHhcC--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDR-DR-SGFISADELQHALSNG--TWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 4 ~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
...+-.+|.+||. ++ +|.|+..||+.++++. .+.+.+++++..+++.+|.+++|.|+|++|+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3567789999997 56 8899999999999631 3566799999999999999999999999999877654
No 55
>KOG0041|consensus
Probab=98.99 E-value=5.6e-09 Score=70.80 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=77.6
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH-
Q psy17054 61 FEDFGALW-KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY- 138 (171)
Q Consensus 61 ~~eF~~~~-~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~- 138 (171)
|.+|.-+- ..++.+..+|..+|.+.+|+|+..|+.+++..+|.|.|+--+..+++..|.|.+|+|+|.+|+-+++...
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 55565333 3567889999999999999999999999999999999999999999999999999999999999988652
Q ss_pred -------HHHHHHhh--cCCCCCCe
Q psy17054 139 -------ALTSAFRS--YDTDQDGV 154 (171)
Q Consensus 139 -------~~~~~f~~--~d~~~~g~ 154 (171)
.+..+-+. .|+...|.
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV 191 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGV 191 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhh
Confidence 24444444 67666665
No 56
>KOG0751|consensus
Probab=98.99 E-value=9.5e-09 Score=78.41 Aligned_cols=161 Identities=14% Similarity=0.217 Sum_probs=115.6
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC-----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH--HHHHHHH
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWT-----PFNPETVRLMIGMFDKHNRGSITFEDFGALWKY--VTDWQNC 77 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-----~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~--~~~~~~~ 77 (171)
.....+|..+|+.++|.++.+++..++.+.... .++.+-++. .+..+....++|.+|.+++.. .+..+++
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qa 184 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQLEHAEQA 184 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999874221 123344444 333334456999999999974 4678899
Q ss_pred HhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC-CCCCCceeHHH---HHHHHHHHHHHHHHHhhcCCCCCC
Q psy17054 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFD-RFGRGTILFDD---FIQCCITLYALTSAFRSYDTDQDG 153 (171)
Q Consensus 78 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~e---F~~~l~~~~~~~~~f~~~d~~~~g 153 (171)
|+..|..++|.|+.-+++.++-....++....+++.+-... .+...++++.. |.++|..++.++++|..+.. ...
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~-~~~ 263 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAG-TRK 263 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhcc-ccc
Confidence 99999999999999999999988765544445665555543 34444566655 55677778889999988752 233
Q ss_pred eeeeeHHHHHHHHhhc
Q psy17054 154 VITIHYEQFLDMVFSL 169 (171)
Q Consensus 154 ~i~l~~~ef~~~~~~~ 169 (171)
.++++++|+..+..++
T Consensus 264 d~~~~kdq~~~~a~~~ 279 (694)
T KOG0751|consen 264 DVEVTKDQFSLAAQTS 279 (694)
T ss_pred chhhhHHHHHHHHHHh
Confidence 3446889988776554
No 57
>KOG2562|consensus
Probab=98.96 E-value=8.7e-09 Score=77.95 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=111.3
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCC------CH--------HHHHHHHHhhCCCCCCcccHHHHHHH--H
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPF------NP--------ETVRLMIGMFDKHNRGSITFEDFGAL--W 68 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~------~~--------~~~~~~~~~~d~~~~g~v~~~eF~~~--~ 68 (171)
..+.+++..++..+.+.+...+|...++.+..... ++ -.++++|-.+++.++|+|+..+.... +
T Consensus 174 t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll 253 (493)
T KOG2562|consen 174 TRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLL 253 (493)
T ss_pred HHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHH
Confidence 34556777777888888888888877775422211 11 22455666678899999999987652 2
Q ss_pred HHH---------------------HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh----hCCCCCC
Q psy17054 69 KYV---------------------TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK----FDRFGRG 123 (171)
Q Consensus 69 ~~~---------------------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~g 123 (171)
..+ ..+...|..+|+|++|.|+.+++.+..... ++.--++.+|.+ .-...+|
T Consensus 254 ~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eG 330 (493)
T KOG2562|consen 254 DALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEG 330 (493)
T ss_pred HHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecC
Confidence 211 123445888899999999999999887554 667778888882 3344688
Q ss_pred ceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHH
Q psy17054 124 TILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQF 162 (171)
Q Consensus 124 ~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef 162 (171)
+|+|++|+.++.++ +.+..+|+..|.+++|.+ +..|.
T Consensus 331 rmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~L--t~~el 373 (493)
T KOG2562|consen 331 RMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGIL--TLNEL 373 (493)
T ss_pred cccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcc--cHHHH
Confidence 99999999999998 468999999999999996 54554
No 58
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.96 E-value=8.8e-09 Score=63.28 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCC-CC-CCcccHHHHHHHHhcCC----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDR-DR-SGFISADELQHALSNGT----WTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT 72 (171)
Q Consensus 4 ~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~ 72 (171)
...++++|..+|. ++ +|.|+..|++.+++... +...+.++++.++..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678999999997 87 69999999999998521 2355789999999999999999999999999887554
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.91 E-value=7.8e-09 Score=65.60 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 70 ~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
....+..+|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|++|.||++||+.++..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999876 2355677889999999999999999999999944
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.90 E-value=9.1e-09 Score=62.39 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=57.7
Q ss_pred cHHHHHHHHhh-cCCCCCC-cccHHHHHHHHhcCC----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQG-VDRDRSG-FISADELQHALSNGT----WTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~-~d~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
....+..+|.. +|.+++| .|+.+||..++.... ....++.++..+++.+|.+++|.|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35678899999 6677765 999999999998732 234567899999999999999999999999988765
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.89 E-value=1.1e-08 Score=56.23 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=46.4
Q ss_pred CCCcccHHHHHHHHhcCCCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 18 RSGFISADELQHALSNGTWTP-FNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
++|.|+.++|+.++..+ +.. ++++++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999764 555 89999999999999999999999999998753
No 62
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.89 E-value=1.1e-08 Score=57.27 Aligned_cols=61 Identities=39% Similarity=0.514 Sum_probs=54.8
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~ 68 (171)
+..+|..+|.+++|.|+.+++..+++. .+.+.+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKS-LGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 678899999999999999999999998 4566788999999999999999999999998764
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.86 E-value=1.5e-08 Score=56.98 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=56.4
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q psy17054 9 NIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNR-GSITFEDFGALWKY 70 (171)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-g~v~~~eF~~~~~~ 70 (171)
.+|..+|.++.|.|...++..+|+.+........+++.+...+|.++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 369999999999999999999999987756688999999999999988 99999999998864
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.84 E-value=2e-08 Score=60.83 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhCCC--CCcceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRD--NSGNIDKSELSAALT-TFGYRLS----DRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 71 ~~~~~~~f~~~d~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
+..+...|..++.. ++|.|+..||..++. .+|..++ ++++..++..+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999865 589999999999996 5565566 8999999999999999999999999988854
No 65
>KOG4251|consensus
Probab=98.82 E-value=1e-08 Score=71.79 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=101.2
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCC--CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH---------
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTP--FNPETVRLMIGMFDKHNRGSITFEDFGALWKYV--------- 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~--------- 71 (171)
..+.+..+|+..|.+.++.|+..+++.+++.--... -+.++.+..|+.+|.+++|.|+++||..-+...
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 357889999999999999999999999888521111 134566778999999999999999997643211
Q ss_pred -----------HHHHHHHhhhCCCCCcc---------eeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy17054 72 -----------TDWQNCFRSFDRDNSGN---------IDKSELSAALTTF-GYRLSDRMIGTMLKKFDRFGRGTILFDDF 130 (171)
Q Consensus 72 -----------~~~~~~f~~~d~~~~g~---------i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 130 (171)
..=.+.|..-++++.|. ++..|+..+|..- ...+-...+.+++.-+|.+++.+++-.+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 01112233333333333 3336666555432 11223344566777778888888888888
Q ss_pred HHHHHH--------------HHHHHHHH-hhcCCCCCCeeeeeHHHHHHHH
Q psy17054 131 IQCCIT--------------LYALTSAF-RSYDTDQDGVITIHYEQFLDMV 166 (171)
Q Consensus 131 ~~~l~~--------------~~~~~~~f-~~~d~~~~g~i~l~~~ef~~~~ 166 (171)
++.... ...-++-| ..+|.++||.+ |.+|+-+++
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGiv--TaeELe~y~ 307 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIV--TAEELEDYV 307 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccce--eHHHHHhhc
Confidence 775421 11122233 34577888885 557776664
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=2.3e-08 Score=60.64 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=57.4
Q ss_pred cHHHHHHHHhhcCCC--CCCcccHHHHHHHHhcCCCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRD--RSGFISADELQHALSNGTWTPFN----PETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~--~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
....+...|..|+.. ++|.|+..||+.++....+..++ ..++..++..+|.+++|.|+|++|+.++..+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 356788899999865 47899999999999743444455 8999999999999999999999999987644
No 67
>KOG0040|consensus
Probab=98.74 E-value=1.4e-07 Score=79.99 Aligned_cols=124 Identities=15% Similarity=0.307 Sum_probs=97.8
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCC-C-----CHHHHHHHHHhhCCCCCCcccHHHHHHHHHH------
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTP-F-----NPETVRLMIGMFDKHNRGSITFEDFGALWKY------ 70 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~-~-----~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~------ 70 (171)
+..++.-+|+.||.+++|.++..+|..||+++++.- . +..+++.+++.+|++.+|.|+..+|.++|-.
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 446778899999999999999999999999976543 2 2348999999999999999999999998853
Q ss_pred --HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh----CC----CCCCceeHHHHHHHH
Q psy17054 71 --VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF----DR----FGRGTILFDDFIQCC 134 (171)
Q Consensus 71 --~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~g~i~~~eF~~~l 134 (171)
-..++.+|+.+|. +..+|+..++... +|++.++-.+... ++ .-.+.+.|.+|++.+
T Consensus 2331 ~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 2488999999999 8899999988643 5556666555543 22 123458899998765
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.71 E-value=8.2e-08 Score=60.96 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~ 68 (171)
..++.-+|..+|.|++|.|+.+|+..+. + ......+..++..+|.+++|.|+++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4556677777777777777777777655 1 1134555667777777777777777777665
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=8.3e-07 Score=53.51 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTF-----GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYAL 140 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 140 (171)
+..+...|..|.. +.+.++..||+.++..- +...++..++.+++..|.|+||.|+|.||+.++..+...
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4566788998884 46799999999999652 445678889999999999999999999999999887443
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.54 E-value=1.1e-06 Score=53.02 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=56.8
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcC----CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNG----TWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT 72 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~ 72 (171)
....+-.+|..|. ++.++++..||+.++.+- ...+..+..+..++...|.|++|.|+|.||+.++..+.
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3466788999996 556799999999999752 23345789999999999999999999999999887654
No 71
>KOG0377|consensus
Probab=98.51 E-value=3e-06 Score=64.35 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHH-----hhhCCCCCcceeHHHHHHHHHHc------CCC-----
Q psy17054 41 PETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCF-----RSFDRDNSGNIDKSELSAALTTF------GYR----- 104 (171)
Q Consensus 41 ~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~~~~~f-----~~~d~~~~g~i~~~el~~~l~~~------~~~----- 104 (171)
..++..-|+.+|.++.|+++..++...+..+..+.--| .....+.+|.+....-.+.+..- +..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 45667778889999999999999998876543222112 22233456666655544433321 110
Q ss_pred -CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH----------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhh
Q psy17054 105 -LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL----------YALTSAFRSYDTDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 105 -~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~----------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~ 168 (171)
-....++.+|+..|.+++|.|+.+||...+..+ ..+.+..+.+|-++||.|++ +||++....
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDl--NEfLeAFrl 615 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDL--NEFLEAFRL 615 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccH--HHHHHHHhh
Confidence 233457889999999999999999999999876 46888899999999999865 889987643
No 72
>KOG0041|consensus
Probab=98.48 E-value=4.7e-07 Score=61.66 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=62.3
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
++...+..+|++||.+.+|+|+..|+...+.+ .+.|.+.-.++.++..+|.|.+|+++|.+|+.++...
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 35677889999999999999999999999999 5677788999999999999999999999999988653
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.42 E-value=6.2e-07 Score=42.43 Aligned_cols=25 Identities=36% Similarity=0.743 Sum_probs=11.2
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALT 99 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~ 99 (171)
..+|+.+|+|++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3444444444444444444444443
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.40 E-value=5.9e-07 Score=42.50 Aligned_cols=26 Identities=46% Similarity=0.856 Sum_probs=13.7
Q ss_pred HHHHHhhcCCCCCCeeeeeHHHHHHHHh
Q psy17054 140 LTSAFRSYDTDQDGVITIHYEQFLDMVF 167 (171)
Q Consensus 140 ~~~~f~~~d~~~~g~i~l~~~ef~~~~~ 167 (171)
+..+|+.+|++++|.| +++||+.++.
T Consensus 2 ~~~~F~~~D~d~dG~I--~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKI--DFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEE--EHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcC--CHHHHHHHHH
Confidence 3445555555555553 4455555544
No 75
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.38 E-value=3.2e-06 Score=44.97 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=41.8
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 88 NIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 88 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.++..|++++|+.++..++++.+..+|..+|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999988764
No 76
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.36 E-value=5.9e-06 Score=51.44 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=58.1
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTD 73 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~ 73 (171)
.+...+..+|..++. ++|.|+-.+...++.+ . .++...+..+|...|.+++|.++++||+..++.+..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMK-S--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH-T--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-c--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 467889999999975 6899999999999987 2 456899999999999999999999999998876643
No 77
>KOG2562|consensus
Probab=98.33 E-value=6.9e-06 Score=62.64 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=93.3
Q ss_pred HhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC----CCCCcccHHHHHHHHHHH------HHHHHHHhh
Q psy17054 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDK----HNRGSITFEDFGALWKYV------TDWQNCFRS 80 (171)
Q Consensus 11 F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~----~~~g~v~~~eF~~~~~~~------~~~~~~f~~ 80 (171)
|-.+|++++|.|+.+++...- ...++...++++|+.+.+ ..+|+++|++|+-++--. ..++--|+.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~----d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYG----DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred HhhhccccccccCHHHHHHHh----ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 778899999999999998543 345667888999995443 467899999999877533 367888999
Q ss_pred hCCCCCcceeHHHHHHHHHHc-------CC--CCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy17054 81 FDRDNSGNIDKSELSAALTTF-------GY--RLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132 (171)
Q Consensus 81 ~d~~~~g~i~~~el~~~l~~~-------~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 132 (171)
+|-+++|.|+..|++-+.... |. .+.+..+.+++........++|+..+|..
T Consensus 360 lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999998776552 21 24456677888888877799999999987
No 78
>KOG0038|consensus
Probab=98.33 E-value=3.8e-06 Score=54.50 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=82.8
Q ss_pred cccHHHHHHHHHHH--HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 58 SITFEDFGALWKYV--TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR-LSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 58 ~v~~~eF~~~~~~~--~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
+|.++....+=... +--+++...|..||.|.++.++|..+++-+... +-+-.+...|+.||-++++.|.-.+....+
T Consensus 55 ~vp~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l 134 (189)
T KOG0038|consen 55 KVPFELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTL 134 (189)
T ss_pred eecHHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHH
Confidence 46666544432211 223567888899999999999999999887542 222234567888999999999999999999
Q ss_pred HHHH-----------HHHHHHhhcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 135 ITLY-----------ALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 135 ~~~~-----------~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
..+. -..++....|.+|||.+ +..||-+++...|
T Consensus 135 ~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl--~~~eFe~~i~raP 179 (189)
T KOG0038|consen 135 TSLTRDELSDEEVELICEKVIEEADLDGDGKL--SFAEFEHVILRAP 179 (189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhCc
Confidence 8872 23467788899999995 7799999988765
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.28 E-value=1.9e-06 Score=41.47 Aligned_cols=30 Identities=40% Similarity=0.691 Sum_probs=24.3
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHH-HcC
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALT-TFG 102 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~-~~~ 102 (171)
+++.+|..+|.+++|.|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 554
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.23 E-value=3.2e-05 Score=48.13 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA 139 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 139 (171)
...+..+|...+. ++|.|+..+...++...+ ++.+.+..++..+|.+++|.++++||+-+|..+..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 3567788999885 689999999999999876 67788999999999999999999999999987643
No 81
>KOG1029|consensus
Probab=98.23 E-value=4.3e-05 Score=61.85 Aligned_cols=126 Identities=17% Similarity=0.309 Sum_probs=102.4
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--------------
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT-------------- 72 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~-------------- 72 (171)
..+.|..+ +.+.|+|+-.+-++++-+ .+ ++...+.+++...|.|.+|+++..||.-.|..+.
T Consensus 18 ~~~qF~~L-kp~~gfitg~qArnfflq-S~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPP 93 (1118)
T KOG1029|consen 18 HDAQFGQL-KPGQGFITGDQARNFFLQ-SG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPP 93 (1118)
T ss_pred HHHHHhcc-CCCCCccchHhhhhhHHh-cC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCCh
Confidence 34555555 567899999999998876 33 3477888999999999999999999988775310
Q ss_pred --------------------------------------------------------------------------------
Q psy17054 73 -------------------------------------------------------------------------------- 72 (171)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (171)
T Consensus 94 sll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se 173 (1118)
T KOG1029|consen 94 SLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSE 173 (1118)
T ss_pred HHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhh
Confidence
Q ss_pred ----------------------HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy17054 73 ----------------------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130 (171)
Q Consensus 73 ----------------------~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 130 (171)
++..+|..+|+..+|+++...=+.+|...+.+ ...+..++...|.|+||+++-+||
T Consensus 174 ~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp--q~~LA~IW~LsDvd~DGkL~~dEf 251 (1118)
T KOG1029|consen 174 GRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP--QNQLAHIWTLSDVDGDGKLSADEF 251 (1118)
T ss_pred cCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc--hhhHhhheeeeccCCCCcccHHHH
Confidence 46789999999999999999999999887744 445788888999999999999999
Q ss_pred HHHHHHHH
Q psy17054 131 IQCCITLY 138 (171)
Q Consensus 131 ~~~l~~~~ 138 (171)
+-.|..++
T Consensus 252 ilam~lie 259 (1118)
T KOG1029|consen 252 ILAMHLIE 259 (1118)
T ss_pred HHHHHHHH
Confidence 98887653
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.17 E-value=2.3e-06 Score=41.20 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHh
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALS 32 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~ 32 (171)
+++++|..+|.+++|.|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578899999999999999999999988
No 83
>KOG4666|consensus
Probab=98.13 E-value=1.1e-05 Score=59.13 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCCCCCcccHHHHHHHHH--HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCceeHH
Q psy17054 52 DKHNRGSITFEDFGALWK--YVTDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIGTMLKKFDRFGRGTILFD 128 (171)
Q Consensus 52 d~~~~g~v~~~eF~~~~~--~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ 128 (171)
...+.+.+...||...+. .-..+...|.+||.+++|.++..+-...+.-+ |.+.+..-++-.+++|+...||.+.-+
T Consensus 237 r~~kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 237 REAKGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred HhccCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 334445566666655433 12467888999999999999988888887776 556888888999999999999999998
Q ss_pred HHHHHHHHHH-----HHHHHHhhcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 129 DFIQCCITLY-----ALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 129 eF~~~l~~~~-----~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
+|..+++..- ..-..|...+...+|+| ++++|...+...|
T Consensus 317 ~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki--~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 317 ILSLILQVVLGVEVLRVPVLFPSIEQKDDPKI--YASNFRKFAATEP 361 (412)
T ss_pred HHHHHHHHhcCcceeeccccchhhhcccCcce--eHHHHHHHHHhCc
Confidence 8888887652 23457888888889995 7799998887654
No 84
>KOG0169|consensus
Probab=98.07 E-value=7.6e-05 Score=60.34 Aligned_cols=131 Identities=16% Similarity=0.266 Sum_probs=107.8
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH---HHHHHHHhh
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV---TDWQNCFRS 80 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~---~~~~~~f~~ 80 (171)
..++..+|..+|++++|.++..+..++++.+ ...+...-+..+|+..+..+++++...+|..+.... ..+..+|..
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~ 213 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQ 213 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHH
Confidence 4788999999999999999999999999973 455567778889998888888999999999877533 367777777
Q ss_pred hCCCCCcceeHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHH
Q psy17054 81 FDRDNSGNIDKSELSAALTTFG--YRLSDRMIGTMLKKFDRF----GRGTILFDDFIQCCIT 136 (171)
Q Consensus 81 ~d~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 136 (171)
+-.+ .+.++..++..++...+ ...+.+.++++++.+... ..+.|+.+.|.++|..
T Consensus 214 ~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 214 YSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 7655 89999999999998874 247888899999887543 3567999999999965
No 85
>KOG0040|consensus
Probab=98.01 E-value=3.3e-05 Score=66.44 Aligned_cols=88 Identities=20% Similarity=0.486 Sum_probs=72.4
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCC--CCHH-----HHHHHHHhhCCCCCCceeHHHHHHHHHHH-------
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR--LSDR-----MIGTMLKKFDRFGRGTILFDDFIQCCITL------- 137 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~--~~~~-----~~~~~~~~~d~~~~g~i~~~eF~~~l~~~------- 137 (171)
....-+|..||++++|.++..+|...|+.+|.. +-++ .++.++...|++.+|+|+.++|.++|...
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 356678999999999999999999999999764 3344 68999999999999999999999999764
Q ss_pred -HHHHHHHhhcCCCCCCeeeeeHHHH
Q psy17054 138 -YALTSAFRSYDTDQDGVITIHYEQF 162 (171)
Q Consensus 138 -~~~~~~f~~~d~~~~g~i~l~~~ef 162 (171)
..|..+|+..+. +.-+ ++..+.
T Consensus 2333 ~~eIE~AfraL~a-~~~y--vtke~~ 2355 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPY--VTKEEL 2355 (2399)
T ss_pred hHHHHHHHHHhhc-CCcc--ccHHHH
Confidence 568889999987 4444 355544
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.94 E-value=1.9e-05 Score=35.93 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=13.9
Q ss_pred HHHHhhhCCCCCcceeHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAA 97 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~ 97 (171)
+.+|..+|.|++|.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666553
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.94 E-value=4.6e-05 Score=58.32 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
...+..+|..+|.+++|.|+.+|+.. +..+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35678899999999999999999952 4678999999999999999999988754
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.89 E-value=1.5e-05 Score=36.22 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=15.8
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHH
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHA 30 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~ 30 (171)
++++|..+|.|++|.|+.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355666777777777777776654
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.89 E-value=6e-05 Score=57.71 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=54.2
Q ss_pred HHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHc
Q psy17054 30 ALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF 101 (171)
Q Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 101 (171)
.+..+.+.+.....+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..+++..
T Consensus 322 ~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 322 RLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3333445566788999999999999999999999953 4678999999999999999999988763
No 90
>KOG1707|consensus
Probab=97.87 E-value=0.00014 Score=57.44 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=94.9
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC---CC--CCcccHHHHHHHHHH-------
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDK---HN--RGSITFEDFGALWKY------- 70 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~---~~--~g~v~~~eF~~~~~~------- 70 (171)
-+..+.++|+..|.+.+|.++-.|+...-+..++.|+.+.++..+-..+.. ++ +..++..-|+.+...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccc
Confidence 357889999999999999999999999988878999888777665554432 11 234555556554321
Q ss_pred -----------------------------------------HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCC-CHH
Q psy17054 71 -----------------------------------------VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRL-SDR 108 (171)
Q Consensus 71 -----------------------------------------~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~-~~~ 108 (171)
.+.+..+|..+|.|++|.++..|+..+++..+... ...
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~ 352 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSS 352 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCC
Confidence 12568899999999999999999999999985432 110
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 109 MIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 109 ~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.-.. .--.+..|.++|+.|++.|..+
T Consensus 353 ~~~~---~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 353 PYKD---STVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred cccc---cceecccceeehhhHHHHHHHH
Confidence 0000 0112258999999999999865
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.77 E-value=1.5e-05 Score=50.45 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 133 (171)
...+...|..+|.+++|.|+..|+..+...+ ...+.-+...+..+|.|++|.|+..|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4567788999999999999999998877655 344445678888899999999999998764
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.68 E-value=0.00026 Score=37.73 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=36.9
Q ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 22 ISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
++..|+.++++. .....+..-+..+|..+|.+++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~-~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKM-MNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHH-TT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678899999998 456668888899999999999999999999888764
No 93
>KOG4251|consensus
Probab=97.67 E-value=0.00029 Score=49.89 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=84.9
Q ss_pred cccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH---------------HHHHHHHHHhhhCCCC
Q psy17054 21 FISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK---------------YVTDWQNCFRSFDRDN 85 (171)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~---------------~~~~~~~~f~~~d~~~ 85 (171)
.++..+|..++..-.....-...++.+.+.+|.+++..++..+|+..-- ...+....=..+|.++
T Consensus 215 llteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNh 294 (362)
T KOG4251|consen 215 LLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNH 294 (362)
T ss_pred hhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCC
Confidence 4666777776654111122245677788889999999999999987431 0123455566789999
Q ss_pred CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 86 SGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 86 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
+|.++.+|+.......++..+..++..++...+.+++.+++.++.+..-
T Consensus 295 DGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~ 343 (362)
T KOG4251|consen 295 DGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERD 343 (362)
T ss_pred ccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHH
Confidence 9999999999998777777777788888888888889999999887653
No 94
>KOG4666|consensus
Probab=97.55 E-value=0.00056 Score=50.40 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=90.1
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHHHHHHhhhCCCCCccee
Q psy17054 18 RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY-------VTDWQNCFRSFDRDNSGNID 90 (171)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~-------~~~~~~~f~~~d~~~~g~i~ 90 (171)
+.+.|...+|..-++- |.+ .-+..+|..+|.+++|.++|.+....+.. ..-++-+|.+|+.+-+|.+.
T Consensus 240 kg~~igi~efa~~l~v----pvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRV----PVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred cCCCcceeEeeeeeec----chh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 4566777777654442 333 44677899999999999999998775543 24678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHh
Q psy17054 91 KSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFR 145 (171)
Q Consensus 91 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~ 145 (171)
..+|.-+|+.. ..+..-.+..++...+...+++|+|.+|.+++..-.++...|-
T Consensus 315 e~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~~ 368 (412)
T KOG4666|consen 315 EHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALSEL 368 (412)
T ss_pred hHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHhCchhhhhhh
Confidence 99999888875 2233333556777777677999999999999988777665443
No 95
>KOG0046|consensus
Probab=97.44 E-value=0.0008 Score=52.55 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR---LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
+..+...|...| +++|+|+..++..++...+.+ ...+++.+++...+.+.+|.|+|++|+..+..+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 456788899999 999999999999999998654 457889999999999999999999999977655
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.26 E-value=0.0015 Score=38.93 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=50.3
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFG-Y-RLSDRMIGTMLKKFDRF----GRGTILFDDFIQCCIT 136 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 136 (171)
+..+|..+.. +.+.|+.++|.+.|..-. . ..+.+.+..++..+..+ ..+.|++++|.++|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678888865 788999999999997763 3 36899999999998654 3789999999999863
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.26 E-value=0.00019 Score=45.47 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~ 66 (171)
..+.=.|..+|.+++|.|+..|+..+...+ .+ ...=+..+++.+|.+++|.|+..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~-~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MP-PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--ST-TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hh-hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344455777777777777777777666542 12 233456677777777777777777653
No 98
>KOG0046|consensus
Probab=97.18 E-value=0.0017 Score=50.74 Aligned_cols=66 Identities=23% Similarity=0.424 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTW--TPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
...+++.|...| +++|.|+..++..++.+... .....++++.++...+++.+|.|+|++|+.++..
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 467889999998 99999999999999987422 1234789999999999999999999999996643
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.07 E-value=0.0014 Score=39.04 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALSNGTWT-PFNPETVRLMIGMFDKH----NRGSITFEDFGALWK 69 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~v~~~eF~~~~~ 69 (171)
++..+|..+.. +.+.++.++|.+.|+..... ..+...+..++..+..+ ..+.++++.|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 47788999944 78899999999999854444 46788899998887543 357788888887663
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.04 E-value=0.0008 Score=30.61 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=18.5
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHhc
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHALSN 33 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~ 33 (171)
++++|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777766653
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.67 E-value=0.0033 Score=28.42 Aligned_cols=19 Identities=47% Similarity=0.842 Sum_probs=7.3
Q ss_pred HhhhCCCCCcceeHHHHHH
Q psy17054 78 FRSFDRDNSGNIDKSELSA 96 (171)
Q Consensus 78 f~~~d~~~~g~i~~~el~~ 96 (171)
|..+|.+++|.|+..++..
T Consensus 6 f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 6 FRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHCCCCCCcEeHHHHHH
Confidence 3333333333333333333
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.66 E-value=0.033 Score=37.69 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhh-CCC-CCCcccHHHHHHHHH-------------
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMF-DKH-NRGSITFEDFGALWK------------- 69 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-d~~-~~g~v~~~eF~~~~~------------- 69 (171)
-.|++--.-+|+|++|.|...|--.-++.++...+-....-.++... +.- ..+.+.-.-|.-.+.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34666667799999999999999999988654432111111111100 000 001111111110000
Q ss_pred -------HHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCC-----C--CHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 70 -------YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR-----L--SDRMIGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 70 -------~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~-----~--~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
..++.+.+|..+++.+.+.+|..|+..++..-... . ..-+...+...+ .+.+|.|.-++...+.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 13578899999999889999999999999884221 1 122223333333 3468999888776654
No 103
>KOG0169|consensus
Probab=96.57 E-value=0.13 Score=42.51 Aligned_cols=122 Identities=14% Similarity=0.279 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHH
Q psy17054 41 PETVRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTML 114 (171)
Q Consensus 41 ~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 114 (171)
...+..+|...|.+++|.+++.+-..+...+ ..+...|+..+..+++.+...++.+.....+..+ ++..++
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f 211 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLF 211 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHH
Confidence 4567778889999999999998877766543 3566778888888999999999999988876544 577888
Q ss_pred HhhCCCCCCceeHHHHHHHHHHHH-----------HHHHHHhhcCC-CCCCeeeeeHHHHHHHHhh
Q psy17054 115 KKFDRFGRGTILFDDFIQCCITLY-----------ALTSAFRSYDT-DQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 115 ~~~d~~~~g~i~~~eF~~~l~~~~-----------~~~~~f~~~d~-~~~g~i~l~~~ef~~~~~~ 168 (171)
..+..+ .+.++..++..++...+ +|...|..... .+.+. ++.+.|..++.+
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~--l~ldgF~~yL~S 274 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGL--LSLDGFTRYLFS 274 (746)
T ss_pred HHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccce--ecHHHHHHHhcC
Confidence 887654 88899999988887653 34444433332 23344 577999888764
No 104
>KOG4065|consensus
Probab=96.39 E-value=0.02 Score=35.90 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=42.2
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHc------CC---C-CCHHHHHHHH----HhhCCCCCCceeHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTF------GY---R-LSDRMIGTML----KKFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~------~~---~-~~~~~~~~~~----~~~d~~~~g~i~~~eF~~~ 133 (171)
..|...|.|++|.|+--|+.+++... |. | +++.+++.++ +.-|.|++|.|+|-||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45888999999999999998888553 22 2 4555555444 4457788999999998764
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.29 E-value=0.026 Score=37.79 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=46.7
Q ss_pred HHHHHhhcC---CCCCCcccHHHHHHHHhcC--CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 7 LWNIFQGVD---RDRSGFISADELQHALSNG--TWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 7 ~~~~F~~~d---~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
|+++|..|. ......++...|.++++.. ....++..++..+|..+...+...|+|++|...+..+
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 345555553 4455689999999999963 3445789999999999877777789999999877654
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.27 E-value=0.07 Score=35.77 Aligned_cols=60 Identities=22% Similarity=0.451 Sum_probs=47.4
Q ss_pred HhhhCCCCCcceeHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 78 FRSFDRDNSGNIDKSELSAALTTFGY---RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 78 f~~~d~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
|..|-..+...|+...|.++|+.++. .++...++.+|..+...+...|+|++|..+|..+
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 33344667788999999999999854 4899999999999876667789999999999865
No 107
>KOG1029|consensus
Probab=96.04 E-value=0.018 Score=47.34 Aligned_cols=66 Identities=17% Similarity=0.365 Sum_probs=57.3
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
+..+++..|+.+|+..+|+++-.+-+.+|.. . .++...+..++..-|.|++|+++-+||+..+..+
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q-S--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQ-S--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHh-c--CCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 4678899999999999999999999999886 3 3457778888999999999999999999887654
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=95.85 E-value=0.098 Score=42.57 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=53.9
Q ss_pred CCcccHHHHHHHHHHH--------HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhC-------
Q psy17054 56 RGSITFEDFGALWKYV--------TDWQNCFRSFDRDNSGNIDKSELSAALTTFGY--RLSDRMIGTMLKKFD------- 118 (171)
Q Consensus 56 ~g~v~~~eF~~~~~~~--------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d------- 118 (171)
.|.++|.+|..+.+.+ ..+..+|..+-.+ .+.|+.++|.++|..... ..+.+.+..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 4678888887766544 4777888888543 367888888888877632 256666666655431
Q ss_pred CCCCCceeHHHHHHHHHH
Q psy17054 119 RFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 119 ~~~~g~i~~~eF~~~l~~ 136 (171)
....+.++++.|..+|..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112345899999999863
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.81 E-value=0.067 Score=36.21 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH-------------HHHHHHHhhcCCCCCCeeeeeHHHHH
Q psy17054 105 LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL-------------YALTSAFRSYDTDQDGVITIHYEQFL 163 (171)
Q Consensus 105 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~-------------~~~~~~f~~~d~~~~g~i~l~~~ef~ 163 (171)
..++..+++|..++..+.+.|++.|..+++..- -+...+|... .+.+|. +.++...
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~--l~Ke~iR 161 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGF--LSKEDIR 161 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCc--EeHHHHh
Confidence 466788999999998888999999999998763 2334455554 355777 5766543
No 110
>KOG4065|consensus
Probab=94.97 E-value=0.092 Score=33.05 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=41.9
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHhcC------CCC--CC-CHHHHHHHHH----hhCCCCCCcccHHHHHH
Q psy17054 9 NIFQGVDRDRSGFISADELQHALSNG------TWT--PF-NPETVRLMIG----MFDKHNRGSITFEDFGA 66 (171)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~------~~~--~~-~~~~~~~~~~----~~d~~~~g~v~~~eF~~ 66 (171)
-.|+..|-++|+.++=-|+.+++.-. +.. |+ +..++..+++ .-|.+++|.|+|-||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 45888999999999999999988642 111 22 3455555554 44778899999999975
No 111
>KOG1265|consensus
Probab=94.78 E-value=1.4 Score=37.55 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=84.1
Q ss_pred CCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhC--CCCCCc-----ccHHHHHHHHHH---HHHHHHHHhhhCCCC
Q psy17054 16 RDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFD--KHNRGS-----ITFEDFGALWKY---VTDWQNCFRSFDRDN 85 (171)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d--~~~~g~-----v~~~eF~~~~~~---~~~~~~~f~~~d~~~ 85 (171)
.+..|.|.+..+.+.+.+ . . ....+...+..+. .+++.. .+++.|..++.. ...+..+|..+..++
T Consensus 159 vn~~grip~knI~k~F~~-~-k--~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA-D-K--KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccccHHHHHHHhhc-C-C--chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCC
Confidence 567888888888877765 2 2 1244444444432 233233 456666666654 368999999999999
Q ss_pred CcceeHHHHHHHHHHc----------CCCCCHHHHHHHHHhhCCCC----CCceeHHHHHHHHHH
Q psy17054 86 SGNIDKSELSAALTTF----------GYRLSDRMIGTMLKKFDRFG----RGTILFDDFIQCCIT 136 (171)
Q Consensus 86 ~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~ 136 (171)
..++|..+|...+..- -.+..+..+..+++.|..+. +|+|+-+.|++++..
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 9999999999999763 12367788999999987764 689999999999865
No 112
>KOG1707|consensus
Probab=94.76 E-value=0.51 Score=38.16 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=69.9
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCC-----CCCceeHHHHHHHHHHH--------
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIGTMLKKFDRF-----GRGTILFDDFIQCCITL-------- 137 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~~-------- 137 (171)
..+.++|.+.|.|.+|.++-.|+...-..+ +.++++.+++.+-...+.. .+..++...|+-+-...
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 478899999999999999999998777665 6678777766554432211 13346666666554331
Q ss_pred ----------------------------------------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhcc
Q psy17054 138 ----------------------------------------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170 (171)
Q Consensus 138 ----------------------------------------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~~ 170 (171)
+-+..+|..||.++||. ++.+|+.....+.|
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~--L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGA--LSPEELKDLFSTAP 345 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCC--cCHHHHHHHhhhCC
Confidence 23678899999999999 68899987766554
No 113
>KOG1955|consensus
Probab=94.73 E-value=0.081 Score=41.61 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=56.9
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
.|++.+..-|+.+-.|.+|.|+=.--++++.+ ..+..+++.-||...|.+.+|-++..||+..++.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 36678888999999999999998888888876 2456889999999999999999999999998864
No 114
>KOG0035|consensus
Probab=94.44 E-value=0.53 Score=39.97 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCC-H---HHHHHHHHhhCCCCCCcccHHHHHHHHHHH-------H
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFN-P---ETVRLMIGMFDKHNRGSITFEDFGALWKYV-------T 72 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~---~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~-------~ 72 (171)
..+++..|..++....|..+.+++..++..++...-. . .+...+....+.+.-|.+++.+|...+... .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4678899999999999999999999999986655543 2 333334444555555889999999988642 3
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSA 96 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~ 96 (171)
++..+|..+-+++. .+..+|+.+
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 56777888877655 677777776
No 115
>KOG1955|consensus
Probab=94.44 E-value=0.13 Score=40.60 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.+.+...|+-...|..|.|+-.--+.++.... +.-+++..+++..|.+.||-|++.|||..+..+
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 45667889999999999999998888888765 444779999999999999999999999998764
No 116
>KOG2243|consensus
Probab=94.03 E-value=0.35 Score=43.11 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=52.2
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
...|..+|+|+.|.|+..+|.+++.. ..+.+..+++-++.-+..+.+...+|++|+.-+.
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 34699999999999999999999977 3567888899999888888899999999998764
No 117
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.76 E-value=0.45 Score=28.76 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcC-------CCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNG-------TWT---PFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-------~~~---~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
.++++-+|.++ .|++|.++...|..+++.+ +.. ......++.+|.... ....|+.++|+..+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 46889999999 8999999999999887753 110 115677888888763 445799999998775
No 118
>KOG3555|consensus
Probab=93.75 E-value=0.093 Score=39.37 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
.+-.+|..+|.+.+|.++..|++.+-.. .++.-+...|+.+|...+|.|+-.||+.++..
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 5567788888888888887777655432 55566777777777777888888888777754
No 119
>KOG2243|consensus
Probab=93.73 E-value=0.15 Score=45.22 Aligned_cols=59 Identities=17% Similarity=0.429 Sum_probs=51.7
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 9 NIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
..|+.+|+++.|.|+..+|.+++.. ....++.++.-+++-...+.+..++|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4688999999999999999999986 4666889999999988889999999999998653
No 120
>KOG4578|consensus
Probab=93.65 E-value=0.048 Score=40.57 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCCCcccHHHHH---HHHHH----HHHHHHHHhhhCCCCCcceeHHHHHHHHHH
Q psy17054 45 RLMIGMFDKHNRGSITFEDFG---ALWKY----VTDWQNCFRSFDRDNSGNIDKSELSAALTT 100 (171)
Q Consensus 45 ~~~~~~~d~~~~g~v~~~eF~---~~~~~----~~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 100 (171)
+-.|..+|.|.++.++-.|+. .++.. ......+|+..|-+++..|+..|+...|..
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 334555555555555544422 22221 123345566666666666666666665544
No 121
>KOG4347|consensus
Probab=93.31 E-value=0.22 Score=40.42 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=42.9
Q ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH------HHHHHHHHhhhCCCCCcceeHHHH
Q psy17054 22 ISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY------VTDWQNCFRSFDRDNSGNIDKSEL 94 (171)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~------~~~~~~~f~~~d~~~~g~i~~~el 94 (171)
++...+..+++.+...+.+..-...+|+..|.+.+|.++|.+++..+.. ++++.-+|..+|.+++ .+..+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4445555555543333334444566667777777777777777765543 2455666777777666 6666666
No 122
>KOG0042|consensus
Probab=92.75 E-value=0.21 Score=40.08 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=58.4
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
+....+..|..+|.++.|.++..++.++++. .+..++...++..+...+.+-+|.+...+|..++...
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~-~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKS-ENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3456678899999999999999999999998 4467789999999999998889999999999877643
No 123
>KOG0998|consensus
Probab=92.70 E-value=0.18 Score=42.92 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
..++..+|..+.+. +|.++-...+.++.. ..+....+-.++...|.+.+|.++..+|...++.
T Consensus 128 ~aky~q~f~s~~p~-~g~~sg~~~~pil~~---s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 128 QAKYDQIFRSLSPS-NGLLSGDKAKPILLN---SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred HHHHHHHHhccCCC-CCccccchhhhhhhc---CCCChhhhccccccccccccCCCChhhhhhhhhH
Confidence 36677778887544 888888888888776 2344566667788889999999999999887754
No 124
>KOG0042|consensus
Probab=92.60 E-value=0.42 Score=38.47 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA 139 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 139 (171)
....-|..+|.++.|.++..++.++++..+..++.+...+++...+.+-+|.+...+|...+..+..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 4567799999999999999999999999887899999999999999888999999999999987643
No 125
>KOG4578|consensus
Probab=91.91 E-value=0.16 Score=37.97 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHhhhCCCCCcceeHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 77 CFRSFDRDNSGNIDKSELSAALTTFGY-RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 77 ~f~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
-|..+|+++++.|...|...+=.-+-. .....-...+++.+|.|+|.+|++.|+..+|.
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 455555555555555553322222110 11222334455555555555555555555554
No 126
>KOG0998|consensus
Probab=91.48 E-value=0.61 Score=39.91 Aligned_cols=129 Identities=18% Similarity=0.262 Sum_probs=99.5
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-------------
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV------------- 71 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~------------- 71 (171)
..+...|+..|..+.|.|+-.+....+.. ..+....+-+++...|..+.|.++...|...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK---SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc---cccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 45678899999999999999999988876 34457778888999999999999999998765431
Q ss_pred -----------------------------------------HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHH
Q psy17054 72 -----------------------------------------TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMI 110 (171)
Q Consensus 72 -----------------------------------------~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~ 110 (171)
..+...|+..... .|.++....+.++...+ +....+
T Consensus 88 ~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l 164 (847)
T KOG0998|consen 88 VLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVL 164 (847)
T ss_pred cccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhh
Confidence 1345556666654 77788777777776654 445556
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHH
Q psy17054 111 GTMLKKFDRFGRGTILFDDFIQCCITLYA 139 (171)
Q Consensus 111 ~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 139 (171)
..+....|.+.+|.++..+|.-.+..+..
T Consensus 165 ~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 165 GRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred ccccccccccccCCCChhhhhhhhhHHHH
Confidence 77888888899999999999888876543
No 127
>KOG3555|consensus
Probab=90.98 E-value=0.41 Score=36.11 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH--HHHHHHHHHh
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWT---PFNPETVRLMIGMFDKHNRGSITFEDFGALWK--YVTDWQNCFR 79 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~--~~~~~~~~f~ 79 (171)
-+|+.+|+.+-.+.++......+...... +.. |.=..++.=||..+|.+.++.++..|...+.. +-..+.-.|.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~-~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfn 289 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASG-FDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFN 289 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccc-cccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHh
Confidence 35677887776666655555555555443 222 23356677789999999999999999887664 3356778899
Q ss_pred hhCCCCCcceeHHHHHHHHHHcC
Q psy17054 80 SFDRDNSGNIDKSELSAALTTFG 102 (171)
Q Consensus 80 ~~d~~~~g~i~~~el~~~l~~~~ 102 (171)
..|...+|.|+..|-=..+...+
T Consensus 290 sCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 290 SCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhcccccCccccchhhhhhccCC
Confidence 99999999999888766665544
No 128
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.74 E-value=0.24 Score=28.35 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC-------CCCCceeHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDR-------FGRGTILFDDFIQ 132 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~ 132 (171)
+++..+|+.+ .+++++||..+|++.|..- .++-++.+... ...|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4678899999 7789999999999886442 22444443221 1236789988875
No 129
>KOG0035|consensus
Probab=90.04 E-value=2.2 Score=36.45 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCCCCCceeHHHHHHHHHHH-------H
Q psy17054 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSD-----RMIGTMLKKFDRFGRGTILFDDFIQCCITL-------Y 138 (171)
Q Consensus 71 ~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~-------~ 138 (171)
+..++..|..+++...|.++.+++.+.|..+|...-. +++..+++.-+.+.-|++++.+|...|.+. .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4578899999999999999999999999999876543 234445555666666999999999999874 3
Q ss_pred HHHHHHhhcCCCCCCeeeeeHHHHHH
Q psy17054 139 ALTSAFRSYDTDQDGVITIHYEQFLD 164 (171)
Q Consensus 139 ~~~~~f~~~d~~~~g~i~l~~~ef~~ 164 (171)
+.+.+|+..-++.. . +..+|++.
T Consensus 826 r~i~s~~d~~ktk~-~--lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-Y--LLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-H--HHHHHHHh
Confidence 45566766644433 3 34466654
No 130
>KOG4347|consensus
Probab=88.69 E-value=1.2 Score=36.43 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 130 (171)
-++++|+.+|.+++|.|++.++...|..+...-..+.+.-+++.++..++ .++.++-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 35778888888888888888888888777444444556667777777666 5555543
No 131
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=86.36 E-value=4.2 Score=23.35 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=35.8
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
.+..+++..+-.++... +.......+...|+.-..++|+.++|++.++.+
T Consensus 5 ~sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 5 TSPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 35567766666666554 666666677777766668889999999988876
No 132
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.95 E-value=5.7 Score=24.03 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHc-------CC----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTF-------GY----RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
++++-+|..+ .|++|.++...|...|..+ |+ ...+..+...|.... .+..|+.+.|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 3456667777 5677888888777777553 11 124445555555542 3556666777666654
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=85.25 E-value=8.3 Score=31.87 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHH--------HHHHHhhc----C--
Q psy17054 85 NSGNIDKSELSAALTTFGY--RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA--------LTSAFRSY----D-- 148 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~--------~~~~f~~~----d-- 148 (171)
+.|.++.+++..+.+.+.. ...+.++..+|..+..+ ++.|+.++|.++|...|. ...++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999877777632 24678899999999754 578999999999987532 22232221 1
Q ss_pred -CCCCCeeeeeHHHHHHHHhh
Q psy17054 149 -TDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 149 -~~~~g~i~l~~~ef~~~~~~ 168 (171)
..+.+. ++.+.|..+++.
T Consensus 92 ~~~~~~~--l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHG--LNLDDFFHFLLY 110 (599)
T ss_pred ccccccC--cCHHHHHHHHcC
Confidence 112222 588999999874
No 134
>KOG3866|consensus
Probab=83.41 E-value=2.3 Score=31.77 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=16.1
Q ss_pred HHhhcCCCCCCcccHHHHHHHHh
Q psy17054 10 IFQGVDRDRSGFISADELQHALS 32 (171)
Q Consensus 10 ~F~~~d~~~~g~i~~~e~~~~l~ 32 (171)
.|.+.|.|++|.++..++..++.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred heeeeccCCcccccHHHHHHHHH
Confidence 45566677778887777776655
No 135
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=83.37 E-value=7.5 Score=23.23 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=40.9
Q ss_pred cceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 87 GNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 87 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
..||..||.+..+..+.++|++.++.++.....+.=+..+-++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999999999998876655566666666666655
No 136
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=83.16 E-value=1.3 Score=27.96 Aligned_cols=31 Identities=10% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 39 FNPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 39 ~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
+++++++.++..+..+..|.+.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5789999999999999999999999998664
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.16 E-value=5.8 Score=32.62 Aligned_cols=62 Identities=11% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCC--CCCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGY--RLSDRMIGTMLKKFDR-FGRGTILFDDFIQCCIT 136 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~~ 136 (171)
.+..+|..+.. ++.++.++|.++|..... ..+.+.+..++..+.. ...+.++++.|.++|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44555555532 346666666666655432 2355556666665422 13456777777777754
No 138
>KOG2871|consensus
Probab=82.95 E-value=1.1 Score=34.22 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNP-ETVRLMIGMFDKHNRGSITFEDFGA 66 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~g~v~~~eF~~ 66 (171)
.+++++.|..+|+.++|.|+++-+..++..+ +.+.+. ..+..+-..+++..-|.+-..+|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 4789999999999999999999999999974 344443 3333333355666666666666554
No 139
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.47 E-value=1.8 Score=27.43 Aligned_cols=32 Identities=13% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 105 LSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 105 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
++++.++.+...+-.|..|.|.|.+|++-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 78899999999999999999999999998874
No 140
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=80.37 E-value=2.7 Score=29.01 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 65 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
++++...+..+++|..||..+--.++.+++.+++...|+.-+...+..++..
T Consensus 48 ~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 48 LTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 4455677889999999999999999999999999999887766666655544
No 141
>KOG1264|consensus
Probab=79.84 E-value=18 Score=31.19 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH-----HHH----
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVT-----DWQ---- 75 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~~-----~~~---- 75 (171)
.++++.+...|......|+..++.+.+-++...-.+...+.+-+..... .++.++|++|..+...+- .+.
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~ 222 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKAILLEFK 222 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchhhhhccc
Confidence 4567777788877777899999999988765554455555555554433 346799999998775431 111
Q ss_pred HHH--hhhCCCCCcceeHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCC-----CCCceeHHHHHHHHHHH
Q psy17054 76 NCF--RSFDRDNSGNIDKSELSAALTTFGYR---LSDRMIGTMLKKFDRF-----GRGTILFDDFIQCCITL 137 (171)
Q Consensus 76 ~~f--~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~~ 137 (171)
..| ..-+...--.++..+|.++|...... .....+...+..+-.+ ..-.+...||+.+|-..
T Consensus 223 ~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 223 KDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred chhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 111 11122223468999999999765322 1222344455544322 23368899999998653
No 142
>KOG3449|consensus
Probab=79.36 E-value=13 Score=23.32 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 133 (171)
+..+|-++...++-..+..++..+|...|.....+.+..+++... |+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 456778888888888999999999999999999999999999973 22 56666554
No 143
>PLN02228 Phosphoinositide phospholipase C
Probab=79.25 E-value=12 Score=30.75 Aligned_cols=28 Identities=11% Similarity=0.492 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 40 NPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 40 ~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
++.++..+|..+..+ +.++.++|..++.
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~ 49 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVS 49 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHH
Confidence 455555555555422 3455555555543
No 144
>PLN02222 phosphoinositide phospholipase C 2
Probab=78.67 E-value=9.3 Score=31.47 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC-CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWT-PFNPETVRLMIGMFDK-HNRGSITFEDFGALWK 69 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~-~~~g~v~~~eF~~~~~ 69 (171)
..++..+|..+.. ++.++.++|.++|+..... ..+.+.+..++..+.. ...+.++++.|..++.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3588999999853 5799999999999875444 3467788888887643 2345699999998773
No 145
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=78.31 E-value=3.5 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.298 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHH
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKH---NRGSITFEDFGALWKYV 71 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~---~~g~v~~~eF~~~~~~~ 71 (171)
..+.+.|..+.. +|.+..+.|..++.- . -+.+-+..+|..+.+. ....|+.+|...+|.++
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM-~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGM-K---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCC-c---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 457788888855 889999999988864 2 2455566666554221 23568888877777654
No 146
>KOG4286|consensus
Probab=76.89 E-value=47 Score=28.42 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHHH-------------------HHHHHHHhhhCCCCCcceeHHHHHHHH
Q psy17054 39 FNPETVRLMIGMFDKHNR-GSITFEDFGALWKYV-------------------TDWQNCFRSFDRDNSGNIDKSELSAAL 98 (171)
Q Consensus 39 ~~~~~~~~~~~~~d~~~~-g~v~~~eF~~~~~~~-------------------~~~~~~f~~~d~~~~g~i~~~el~~~l 98 (171)
++-..+..+|...+..++ .......-+..+... -.+..++..||..++|.|..-+|+..+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 445566677777665543 334444444433211 145778999999999999999999888
Q ss_pred HHcCCCCCHHHHHHHHHhhCCCCCCceeHH-------HHHHHHHHH------------HHHHHHHhhcCCCCCCeeeeeH
Q psy17054 99 TTFGYRLSDRMIGTMLKKFDRFGRGTILFD-------DFIQCCITL------------YALTSAFRSYDTDQDGVITIHY 159 (171)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~-------eF~~~l~~~------------~~~~~~f~~~d~~~~g~i~l~~ 159 (171)
..+.....++....+|+.....+. .++-. +.+.+.+.+ +..+.+|+ .-.|..+++.
T Consensus 497 i~lck~~leek~~ylF~~vA~~~s-q~~q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~----~v~~~pei~~ 571 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTS-QCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQ----FVNNKPEIEA 571 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchh-hHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHH----hcCCCCcchH
Confidence 777665666667789999875433 23222 333333333 23456666 2345556788
Q ss_pred HHHHHHHhh
Q psy17054 160 EQFLDMVFS 168 (171)
Q Consensus 160 ~ef~~~~~~ 168 (171)
.+|.+++..
T Consensus 572 ~~f~dw~~~ 580 (966)
T KOG4286|consen 572 ALFLDWMRL 580 (966)
T ss_pred HHHHHHhcc
Confidence 999988753
No 147
>PLN02228 Phosphoinositide phospholipase C
Probab=76.74 E-value=14 Score=30.37 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=48.7
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWT-PFNPETVRLMIGMFDKH----NRGSITFEDFGALWK 69 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~v~~~eF~~~~~ 69 (171)
-..++..+|..+.. ++.++.++|.++|+...+. ..+.+.+..++..+... ..|.++.+.|..++.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 35788999999853 3589999999999864443 34567788889887643 336799999988773
No 148
>PLN02230 phosphoinositide phospholipase C 4
Probab=76.55 E-value=16 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=35.3
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcC-C--CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFG-Y--RLSDRMIGTMLKKFDR-------FGRGTILFDDFIQCCIT 136 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~l~~ 136 (171)
..+..+|..+..++ +.|+.++|.++|.... . ..+.+.+..++..+.. -..+.++.+.|..+|..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34555566654332 5666666666665543 1 1244455555543311 12346899999998864
No 149
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=76.03 E-value=8 Score=19.89 Aligned_cols=31 Identities=10% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhc-CCCCCCeeeeeHHHHHHHHh
Q psy17054 136 TLYALTSAFRSY-DTDQDGVITIHYEQFLDMVF 167 (171)
Q Consensus 136 ~~~~~~~~f~~~-d~~~~g~i~l~~~ef~~~~~ 167 (171)
.+..+..+|+.| .++|+..- |++.||...+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~-Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDT-LSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTS-EEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCe-EcHHHHHHHHH
Confidence 345566777766 33444332 67777776653
No 150
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=73.42 E-value=4.4 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=36.2
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKH-------NRGSITFEDFGA 66 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~-------~~g~v~~~eF~~ 66 (171)
+.+++.+.|+.+ .++.+.|+..+|+..+.. +.++-+.+.+... ..|..+|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p--------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP--------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C--------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc--------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 568899999999 777899999999977643 1123334333211 225688888864
No 151
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=70.15 E-value=14 Score=20.69 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.2
Q ss_pred hhhCCCCCcceeHHHHHHHHHHc----------CCCCCHHHHHHHHHhh
Q psy17054 79 RSFDRDNSGNIDKSELSAALTTF----------GYRLSDRMIGTMLKKF 117 (171)
Q Consensus 79 ~~~d~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~ 117 (171)
+++|...+.+|+.+++.++...- |..+|..-+..++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 46788888899999998888762 4456666555555443
No 152
>KOG3866|consensus
Probab=69.75 E-value=20 Score=27.03 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHhhCCCCCCceeHHHHHHH
Q psy17054 111 GTMLKKFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 111 ~~~~~~~d~~~~g~i~~~eF~~~ 133 (171)
+.+++..|.|.+..|+.++|++.
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhh
Confidence 34455555555555555555543
No 153
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=66.33 E-value=22 Score=20.24 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=31.4
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 89 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
++.+++..+++..|.+++..++..+++.-+..+--.++-..+..+|.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 34467888888888889999988888885543333444445555544
No 154
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.78 E-value=11 Score=26.03 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 65 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
..+++..+.++++|..||...--..+.+++.+++..-+.-.+...+..++..
T Consensus 46 ~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~N 97 (179)
T TIGR00624 46 ITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIAN 97 (179)
T ss_pred HHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHH
Confidence 3455667889999999999988889999999999988877777666666554
No 155
>PLN02230 phosphoinositide phospholipase C 4
Probab=63.90 E-value=39 Score=28.12 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCC--CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q psy17054 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDK-------HNRGSITFEDFGALWK 69 (171)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~d~-------~~~g~v~~~eF~~~~~ 69 (171)
+.++..+|..+. ++++.++.++|...|+..... ..+.+.+..++..+-. -+.+.++.+.|..++.
T Consensus 28 ~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 468899999994 444899999999999974422 2356667777764421 1234699999998763
No 156
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=63.85 E-value=40 Score=22.89 Aligned_cols=56 Identities=18% Similarity=0.420 Sum_probs=38.9
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy17054 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQD 152 (171)
Q Consensus 89 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~ 152 (171)
|...+++.-|++.|...+...-..+++..-.++.|.| |..|. .++.+-++||++++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~~-------~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNIQ-------GIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehHH-------HHHHHHHhcCCCCc
Confidence 3456788888888988877777778888777766665 44442 25556677776665
No 157
>KOG1265|consensus
Probab=63.14 E-value=33 Score=29.89 Aligned_cols=65 Identities=14% Similarity=0.404 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHhcC---------CCCCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHH
Q psy17054 5 EFLWNIFQGVDRDRSGFISADELQHALSNG---------TWTPFNPETVRLMIGMFDKHN----RGSITFEDFGALWK 69 (171)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~---------~~~~~~~~~~~~~~~~~d~~~----~g~v~~~eF~~~~~ 69 (171)
.++.++|..+-.++..+++..+|..+++.- .+.+..+..++.++..+..+. +|.++-+-|+..+.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 568889999977777899999999999852 344577899999999987664 58899999988764
No 158
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=62.97 E-value=9.4 Score=26.53 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 65 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
..++...+.++.+|..||...--.++.+++.+++..-+.-.+...+..++..
T Consensus 47 ~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 47 ITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 3345567889999999999988888999999999887766666666665554
No 159
>PLN02223 phosphoinositide phospholipase C
Probab=62.83 E-value=36 Score=27.86 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=10.7
Q ss_pred CceeHHHHHHHHHH
Q psy17054 123 GTILFDDFIQCCIT 136 (171)
Q Consensus 123 g~i~~~eF~~~l~~ 136 (171)
+.++.+.|.++|..
T Consensus 79 ~~l~~~~f~~~L~s 92 (537)
T PLN02223 79 RCLELDHLNEFLFS 92 (537)
T ss_pred cccCHHHHHHHhcC
Confidence 56888888888864
No 160
>PLN02223 phosphoinositide phospholipase C
Probab=62.71 E-value=37 Score=27.77 Aligned_cols=66 Identities=6% Similarity=0.054 Sum_probs=47.0
Q ss_pred cHHHHHHHHhhcCCCCCCcccHHHHHHHH---hcCC-CCCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRDRSGFISADELQHAL---SNGT-WTPFNPETVRLMIGMFDKH--------NRGSITFEDFGALWK 69 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l---~~~~-~~~~~~~~~~~~~~~~d~~--------~~g~v~~~eF~~~~~ 69 (171)
..+.++..|..+ .+++|.++...+.+++ .... ....+.++++.++..+-.. ..+.++.+.|..++.
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 357889999999 5778999999999988 4322 2345677777777755322 125689999988774
No 161
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=62.46 E-value=36 Score=21.31 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=8.6
Q ss_pred hCCCCCcceeHHHHHHHHH
Q psy17054 81 FDRDNSGNIDKSELSAALT 99 (171)
Q Consensus 81 ~d~~~~g~i~~~el~~~l~ 99 (171)
+|...+-+|+.+++..+..
T Consensus 12 YDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cCCCccceeeHHHHHHHHH
Confidence 4444444444444444443
No 162
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.32 E-value=32 Score=21.79 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 132 (171)
+..+|-+....++..+|.+++..+|+..|..+....+..+++.+.. .+.++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3456667777777789999999999999999999888888888743 24555554
No 163
>KOG2871|consensus
Probab=61.75 E-value=10 Score=29.26 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=43.1
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHH-hhCCCCCCceeHHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLK-KFDRFGRGTILFDDFIQC 133 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~i~~~eF~~~ 133 (171)
+++++.|+.+|+.++|.|+.+-++.++...+...++...-.++. ..+...-|.|-..+|..-
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 37899999999999999999999999999875555543333332 245544555555555443
No 164
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=58.32 E-value=14 Score=23.78 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCcceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH-------HHHHHHHhhcCCCCCCee
Q psy17054 85 NSGNIDKSELSAALTTF--GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL-------YALTSAFRSYDTDQDGVI 155 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~-------~~~~~~f~~~d~~~~g~i 155 (171)
-+|.++..|...+...+ ...++......++..+........++.+++..+... .-+..++...-. ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 36778888877666555 223445556666666554434456677777666441 223445555554 4566
Q ss_pred eeeHHHHHHHHh
Q psy17054 156 TIHYEQFLDMVF 167 (171)
Q Consensus 156 ~l~~~ef~~~~~ 167 (171)
+..+.+++.-+.
T Consensus 114 ~~~E~~~l~~ia 125 (140)
T PF05099_consen 114 SPEEQEFLRRIA 125 (140)
T ss_dssp SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 567777766543
No 165
>KOG3077|consensus
Probab=56.96 E-value=77 Score=23.36 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=41.5
Q ss_pred cHHHHHHHHhhcC-CCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVD-RDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 3 ~~~~~~~~F~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
+...+.+.|..+- +..+..|..+.+..+...++..|.+... -.+.-.+....=+.++-++|+..+.
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~-LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISV-LVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHH-HHHHHHhccchhhhhhHHHHHHHHH
Confidence 4556777787772 2233588999999999986655533222 2223344444457788999988665
No 166
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.87 E-value=57 Score=21.52 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHH-------HHHHHHHhhhCCCC
Q psy17054 20 GFISADELQHALSNGTWTPFNPETVRLMIGMFDK-------HNRGSITFEDFGALWKYV-------TDWQNCFRSFDRDN 85 (171)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~-------~~~g~v~~~eF~~~~~~~-------~~~~~~f~~~d~~~ 85 (171)
+.++..||.++-+-..+ +...++.++..+.. +..+.|+|+-|..+|.-. +-...+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~ey---s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY---STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 45666666655442111 22334444444421 223457777777666521 22355666665443
No 167
>KOG4004|consensus
Probab=55.15 E-value=5.8 Score=27.75 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHhhhCCC-CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 76 NCFRSFDRD-NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 76 ~~f~~~d~~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
..|-.+|+. .+|++|-.|+..+-..+ .+.+.-+...|+.+|.|++|.|+.++|-.++..
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eeeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 345566653 67888888876544332 133344566778888888999999888877653
No 168
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=55.08 E-value=18 Score=15.43 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=7.4
Q ss_pred CCCCCCcccHHHHHH
Q psy17054 15 DRDRSGFISADELQH 29 (171)
Q Consensus 15 d~~~~g~i~~~e~~~ 29 (171)
|.+++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 345555555555543
No 169
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=55.08 E-value=12 Score=25.89 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 65 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
..++...+.++.+|.-||.+.--.++.+++.+++..-+.-.+...+..++..
T Consensus 42 ~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~N 93 (179)
T PF03352_consen 42 STILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINN 93 (179)
T ss_dssp HHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 3445567889999999999888889999999999887777777777666555
No 170
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=54.60 E-value=52 Score=20.70 Aligned_cols=55 Identities=7% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 134 (171)
..+|-+....++..+|.+++..+|+..|..+....+..+++.+.. .+.++.+.-.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 455666777778789999999999999999988888888877643 2456665543
No 171
>PHA02335 hypothetical protein
Probab=54.43 E-value=38 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy17054 110 IGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDG 153 (171)
Q Consensus 110 ~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g 153 (171)
+.-.++.+. +...|++++|..-++++.-|+..|..|...++=
T Consensus 12 m~fAi~~Y~--np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 12 MLFAIKNYN--NPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGEL 53 (118)
T ss_pred HHHHHHhcC--CcccccHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 344555654 256789999999999888888888888877664
No 172
>KOG0039|consensus
Probab=54.29 E-value=36 Score=28.65 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=51.9
Q ss_pred ccHHHHHH-HHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHc--------CCCCCHHHHHHHHHhhCCCCCCceeHHH
Q psy17054 59 ITFEDFGA-LWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF--------GYRLSDRMIGTMLKKFDRFGRGTILFDD 129 (171)
Q Consensus 59 v~~~eF~~-~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~i~~~e 129 (171)
+++++|.. .++.-++++..|..+|. ++|.++.+++..++... ....+.+....++...+.++.|.+.+.+
T Consensus 4 ~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 4 ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNED 82 (646)
T ss_pred cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecc
Confidence 66666651 11234567777777777 78888888887776553 1224555667778888777788888777
Q ss_pred HHHHHHHH
Q psy17054 130 FIQCCITL 137 (171)
Q Consensus 130 F~~~l~~~ 137 (171)
+...+...
T Consensus 83 ~~~ll~~~ 90 (646)
T KOG0039|consen 83 LEILLLQI 90 (646)
T ss_pred hhHHHHhc
Confidence 77777654
No 173
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=53.55 E-value=47 Score=19.89 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 20 GFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
..++..||.+..+. .+.+++.+.++.++.....+.=.-.+-++=..++..+
T Consensus 13 n~iT~~eLlkyskq-y~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQ-YNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 36889999999998 7888999999999998876665566777766666544
No 174
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=53.00 E-value=27 Score=21.21 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=31.2
Q ss_pred CcceeHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 86 SGNIDKSELSAALTTFG--YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 86 ~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
+|.++..|...+-..+. ..+++.+...++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56677777655554331 2356666777776665544455677777777654
No 175
>KOG1954|consensus
Probab=52.59 E-value=33 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~ 68 (171)
.+.++|..+ .--||.|+-..-.+.+-. ..++...+-.+|...|.+.+|.++-+||...-
T Consensus 445 ~yde~fy~l-~p~~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefala~ 503 (532)
T KOG1954|consen 445 TYDEIFYTL-SPVNGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFALAN 503 (532)
T ss_pred chHhhhhcc-cccCceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHHHH
Confidence 455666666 445777776666665544 23456677777888888888888888876543
No 176
>PHA02105 hypothetical protein
Probab=51.81 E-value=39 Score=18.48 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=7.6
Q ss_pred CCeeeeeHHHHHHHHh
Q psy17054 152 DGVITIHYEQFLDMVF 167 (171)
Q Consensus 152 ~g~i~l~~~ef~~~~~ 167 (171)
...+.|+++||..++.
T Consensus 41 i~yvyls~~e~~si~p 56 (68)
T PHA02105 41 IKYVYLSYEEFNSIMP 56 (68)
T ss_pred eEEEEEeHHHhccccc
Confidence 4444455555544443
No 177
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=51.78 E-value=53 Score=23.02 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=32.9
Q ss_pred CCcccHHHHHHHHHHH---HHHHHHHhhhCCCCCcceeHHH-HHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHH
Q psy17054 56 RGSITFEDFGALWKYV---TDWQNCFRSFDRDNSGNIDKSE-LSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131 (171)
Q Consensus 56 ~g~v~~~eF~~~~~~~---~~~~~~f~~~d~~~~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 131 (171)
+|.|+.+++...+... .++..++.. --++.||..+ |.+++..++.+. ++-++.+.+....++ .|.+|.
T Consensus 11 DGTITl~Ds~~~itdtf~~~e~k~l~~~---vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp----~fKef~ 82 (220)
T COG4359 11 DGTITLNDSNDYITDTFGPGEWKALKDG---VLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP----GFKEFV 82 (220)
T ss_pred CCceEecchhHHHHhccCchHHHHHHHH---HhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc----cHHHHH
Confidence 3556655555544321 233322222 2344555443 455565554433 333344444344442 355555
Q ss_pred HHHHH
Q psy17054 132 QCCIT 136 (171)
Q Consensus 132 ~~l~~ 136 (171)
..+..
T Consensus 83 e~ike 87 (220)
T COG4359 83 EWIKE 87 (220)
T ss_pred HHHHH
Confidence 55543
No 178
>KOG2419|consensus
Probab=51.31 E-value=13 Score=30.92 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred CceeHHHHHHHHHHH-------------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhhc
Q psy17054 123 GTILFDDFIQCCITL-------------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169 (171)
Q Consensus 123 g~i~~~eF~~~l~~~-------------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~~ 169 (171)
|.++.++.+.++... +.-...+..+++.+-..-++++.|.++-+...
T Consensus 520 ~~vtVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~ 579 (975)
T KOG2419|consen 520 GVVTVDELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWAGQSITRSQLVEGLQSW 579 (975)
T ss_pred CeeEHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCCccccchhhhhhhhhcc
Confidence 889999998888742 12234566677777766677777777665543
No 179
>KOG4403|consensus
Probab=49.87 E-value=1e+02 Score=24.63 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=17.8
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHH
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTT 100 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~ 100 (171)
+.++.+-+.+|-|.+|.|+.+|-..+++.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHH
Confidence 45556666666666666666665555543
No 180
>KOG0506|consensus
Probab=48.33 E-value=58 Score=26.32 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=54.5
Q ss_pred HHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh---hC-----CCCCCceeHHHHHHHHHHH-----------
Q psy17054 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK---FD-----RFGRGTILFDDFIQCCITL----------- 137 (171)
Q Consensus 77 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~---~d-----~~~~g~i~~~eF~~~l~~~----------- 137 (171)
+|..+-...++.++..-|-.+|+..|..-++-.+..+|.+ ++ ....+.++-+-|-+++...
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkq 170 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQ 170 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcC
Confidence 5777766667899999999999999887666666666554 22 2335568888888877431
Q ss_pred ----------HHHHHHHhhcCCCCCCee
Q psy17054 138 ----------YALTSAFRSYDTDQDGVI 155 (171)
Q Consensus 138 ----------~~~~~~f~~~d~~~~g~i 155 (171)
..|..+|...-....|.+
T Consensus 171 mVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 171 MVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 456677777766666664
No 181
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=47.19 E-value=53 Score=18.67 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=26.3
Q ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy17054 22 ISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68 (171)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~ 68 (171)
++-+++..++.. .+.++++.++..++++-+..+-..++-+.+..++
T Consensus 14 l~d~~m~~if~l-~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFAL-AGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHH-cCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 344566667765 6667777777777776544333334444444433
No 182
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=45.63 E-value=55 Score=18.42 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=28.4
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.+..|+.+-++.++..+|..+++..+..+++..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366799999999999999999999998888764
No 183
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.82 E-value=84 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALT 99 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~ 99 (171)
.+...||++++|.|+.-.++.++.
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHhCCCCCCeeehhHHHHHHH
Confidence 344445555555555555444443
No 184
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=44.09 E-value=61 Score=18.67 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.4
Q ss_pred ccHHHHHHHHH
Q psy17054 59 ITFEDFGALWK 69 (171)
Q Consensus 59 v~~~eF~~~~~ 69 (171)
++.++-..+|.
T Consensus 46 ~~~eeiq~LCd 56 (71)
T PF04282_consen 46 MPVEEIQKLCD 56 (71)
T ss_pred CCHHHHHHHhH
Confidence 55555444443
No 185
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=43.98 E-value=83 Score=19.96 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=38.4
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 132 (171)
..+|-+.-..++-.+|.+++..+|...|..+....+..+++.+.. -+.++.+.
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 345555655667779999999999999988888888877777643 24555553
No 186
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=43.78 E-value=40 Score=17.83 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCC
Q psy17054 18 RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKH 54 (171)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 54 (171)
.+|.++..+++..+.. +.+-+-.++..+|..
T Consensus 7 ~~~~itv~~~rd~lg~------sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLLGL------SRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHHTS-------HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHCc------cHHHHHHHHHHHhcc
Confidence 3778888888888865 566666677666643
No 187
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=43.62 E-value=57 Score=18.00 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=21.3
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 88 NIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 88 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.+|.+|+...+..++..++.++...++...
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 467777777777777777777766666664
No 188
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=42.12 E-value=83 Score=19.46 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=38.2
Q ss_pred HHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC---CCCCceeHHHHHHHHHHHH
Q psy17054 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDR---FGRGTILFDDFIQCCITLY 138 (171)
Q Consensus 73 ~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~eF~~~l~~~~ 138 (171)
.++.-|..+.. +|.|+.+.|-..+ |..-+.+.+.++|..... -..+.|+-++...++.++.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 34555666655 8899999998877 444566777777766432 1256788888888887763
No 189
>KOG4301|consensus
Probab=41.54 E-value=51 Score=25.30 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=47.2
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
......+|..+.|.++..-+..++..+....-.+....++..... .+|.+.+..|..++..+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH
Confidence 445667899999999999999999887544444557778887754 48888888888888764
No 190
>KOG4070|consensus
Probab=40.75 E-value=31 Score=23.09 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred cHHHHHHHHhhcCCC----CCC-cccHHHHHHHHhcC---CCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 3 SREFLWNIFQGVDRD----RSG-FISADELQHALSNG---TWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 3 ~~~~~~~~F~~~d~~----~~g-~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
....+.+.|..|..- .+| .++-..+.++++.. .+..++..+....|+.+.-...+.++|++|...+..+
T Consensus 10 ~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 10 DMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred chhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 344556666666432 334 57888888888853 2344566667777877766666789999997766543
No 191
>PRK00523 hypothetical protein; Provisional
Probab=40.21 E-value=74 Score=18.38 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=28.6
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.+..|+.+-++.++..+|..+++..+..+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366799999999999999999999998888765
No 192
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=40.08 E-value=72 Score=21.33 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHHHHc
Q psy17054 59 ITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF 101 (171)
Q Consensus 59 v~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l~~~ 101 (171)
-+.+.+...+..+..+..-....|..+.++||.++++.++-.+
T Consensus 56 ~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 56 PQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3455577777788888888889999999999999999887554
No 193
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=39.18 E-value=38 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=16.4
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFD 118 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 118 (171)
..|+||..++..+|.... ++.+.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 356677777777776432 55566666666543
No 194
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.78 E-value=78 Score=18.17 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.+..|+.+-++-++...|..+++..+..+++..
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 366799999999999999999998888888765
No 195
>KOG3449|consensus
Probab=37.91 E-value=1e+02 Score=19.39 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy17054 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66 (171)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~ 66 (171)
+-..|-+++..++...+..++.+++..+ +.....+.+..+++.+. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 3455667777788888999999999984 45568888888888876 44 6666554
No 196
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.02 E-value=69 Score=21.27 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=38.6
Q ss_pred HHHhhhCCCCCcceeHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 76 NCFRSFDRDNSGNIDKSELSAALTTF--GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 76 ~~f~~~d~~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
-+|+.... +|.++..|.....+-+ .+.++.+.+..++.....-+...+++-.|...+.+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45666655 4557777755444333 35577778888877766555667788888887764
No 197
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.28 E-value=56 Score=15.46 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=13.8
Q ss_pred CCceeHHHHHHHHHHHHHHH
Q psy17054 122 RGTILFDDFIQCCITLYALT 141 (171)
Q Consensus 122 ~g~i~~~eF~~~l~~~~~~~ 141 (171)
.|.|++.+++.+..++....
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~ 21 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFY 21 (33)
T ss_pred CceecHHHHHHHHHHHHHHH
Confidence 56778888887777654443
No 198
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.02 E-value=1.3e+02 Score=19.77 Aligned_cols=49 Identities=8% Similarity=0.203 Sum_probs=35.5
Q ss_pred CCcceeHHHHHHHHHHcCC---------CCCHHHHHHHHHhhCCCCCC-ceeHHHHHHH
Q psy17054 85 NSGNIDKSELSAALTTFGY---------RLSDRMIGTMLKKFDRFGRG-TILFDDFIQC 133 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~---------~~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 133 (171)
|+-.||.+||.++++.-.. .++++.+..+...+...+.+ .++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6778999999988877421 26888888888887765444 4888777654
No 199
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=34.79 E-value=71 Score=17.91 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=19.8
Q ss_pred CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q psy17054 86 SGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDR 119 (171)
Q Consensus 86 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 119 (171)
++.++..++...+...|..++++.+...++..+.
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~ 44 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER 44 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 3456666666666665666666666655555543
No 200
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=34.57 E-value=81 Score=18.69 Aligned_cols=44 Identities=27% Similarity=0.334 Sum_probs=29.4
Q ss_pred CceeHHHHHHHHHHH--HHHHHHHhhcCCCCCCeeeeeHHHHHHHH
Q psy17054 123 GTILFDDFIQCCITL--YALTSAFRSYDTDQDGVITIHYEQFLDMV 166 (171)
Q Consensus 123 g~i~~~eF~~~l~~~--~~~~~~f~~~d~~~~g~i~l~~~ef~~~~ 166 (171)
-+++|.+.+..+.++ ..-..+|..-|.+||..---|-+|...++
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRITVRSDeEm~AMl 66 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAML 66 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeeccccCCeeEecchHHHHHHH
Confidence 458888888777764 33456788888888876555555554443
No 201
>KOG2301|consensus
Probab=33.23 E-value=29 Score=32.32 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCC-H--HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q psy17054 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFN-P--ETVRLMIGMFDKHNRGSITFEDFGALWKY 70 (171)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~--~~~~~~~~~~d~~~~g~v~~~eF~~~~~~ 70 (171)
.+.++..++|..+|++..|.|...++..+++.+. .|+. . ...+-+.-......++.|++.+-+.++.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~-ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD-PPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC-CccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4567899999999999999999999999999742 2211 0 00022222344556678888887766543
No 202
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=32.74 E-value=1.2e+02 Score=21.11 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=17.0
Q ss_pred CCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 82 DRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 82 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
..+.+|.++.+++.+.+..-+..++.+++..+...
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 34566667766666666655555566666666655
No 203
>PRK01844 hypothetical protein; Provisional
Probab=31.82 E-value=1.1e+02 Score=17.72 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=28.4
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.+..|+.+-++.++...|..+++..+..+++..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356799999999999999999999998888765
No 204
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=31.80 E-value=84 Score=17.42 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.4
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHH
Q psy17054 88 NIDKSELSAALTTFGYRLSDRMIGT 112 (171)
Q Consensus 88 ~i~~~el~~~l~~~~~~~~~~~~~~ 112 (171)
.|+.++|..+|+.....++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4778888888888766677766654
No 205
>KOG1264|consensus
Probab=29.80 E-value=2.2e+02 Score=25.16 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHH-HHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRM-IGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 74 ~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
+...+-..|......|+..+++.+|...+..++... ..+-+.... -+.+.++|+.|..+...+
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~-~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDG-ARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhh-hccccccHHHHHHHHHHH
Confidence 345566667777777999999999988776654432 223333332 347789999998887764
No 206
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=29.60 E-value=1.7e+02 Score=20.21 Aligned_cols=13 Identities=8% Similarity=0.232 Sum_probs=6.2
Q ss_pred CCCCcccHHHHHH
Q psy17054 54 HNRGSITFEDFGA 66 (171)
Q Consensus 54 ~~~g~v~~~eF~~ 66 (171)
+.+|.++.++.+.
T Consensus 29 d~~G~v~v~~Ll~ 41 (179)
T PRK00819 29 DEEGWVDIDALIE 41 (179)
T ss_pred CCCCCEEHHHHHH
Confidence 3444555555444
No 207
>PF14277 DUF4364: Domain of unknown function (DUF4364)
Probab=27.30 E-value=1.6e+02 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q psy17054 96 AALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY 138 (171)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 138 (171)
-++..++.|+|...+..++-. +|.++|=.+..++..+.
T Consensus 7 YiL~~v~~pltn~qit~~iL~-----~~~~nYF~lqq~l~eL~ 44 (163)
T PF14277_consen 7 YILKKVKFPLTNSQITEFILE-----NEYTNYFTLQQALSELV 44 (163)
T ss_pred HHHHhCCCCCCHHHHHHHHHh-----cCcccHHHHHHHHHHHH
Confidence 356777889999888777765 67888888888887653
No 208
>PF12943 DUF3839: Protein of unknown function (DUF3839); InterPro: IPR024365 This is a family of uncharacterised proteins that are found in Trichomonas.
Probab=27.22 E-value=54 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=21.8
Q ss_pred ceeHHHHHHHHHHHHHHHHHHhhcCCCCCCee
Q psy17054 124 TILFDDFIQCCITLYALTSAFRSYDTDQDGVI 155 (171)
Q Consensus 124 ~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g~i 155 (171)
.-+|++|++.+... +|+.-|+++.|.+
T Consensus 137 fktydnfvslva~c-----vw~ir~kdrrgkv 163 (242)
T PF12943_consen 137 FKTYDNFVSLVAKC-----VWQIRDKDRRGKV 163 (242)
T ss_pred ccccchHHHHHHHH-----HHHHHccccccch
Confidence 45788999887754 8888999999885
No 209
>KOG0506|consensus
Probab=26.94 E-value=2.7e+02 Score=22.77 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHH-------------HHHHHHHhhcCCCCCCeeeeeHHHHHHHHhh
Q psy17054 112 TMLKKFDRFGRGTILFDDFIQCCITL-------------YALTSAFRSYDTDQDGVITIHYEQFLDMVFS 168 (171)
Q Consensus 112 ~~~~~~d~~~~g~i~~~eF~~~l~~~-------------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~~~ 168 (171)
-+|..+.....+++++..|+..|+.. ++++.+=+....+.+|-. |+++.|.+++..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~-LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWL-LDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhccccccee-ecHHHHHHhhcc
Confidence 34455544446899999999999874 233333333334555554 899999988653
No 210
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=26.66 E-value=1.5e+02 Score=17.72 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCCCCCeeeeeHH
Q psy17054 138 YALTSAFRSYDTDQDGVITIHYE 160 (171)
Q Consensus 138 ~~~~~~f~~~d~~~~g~i~l~~~ 160 (171)
+.+..+|+.+| .||.+.++|.
T Consensus 61 ~~~g~LY~~~~--~dGfLyi~Ys 81 (87)
T cd01612 61 ENVGNLYRCFG--TNGELIVSYC 81 (87)
T ss_pred hHHHHHHHhcC--CCCEEEEEEe
Confidence 34667788884 5777766653
No 211
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.55 E-value=68 Score=21.03 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q psy17054 85 NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136 (171)
Q Consensus 85 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 136 (171)
.+|.|...-++.+..- ....+...+.....+. ..|+.+|++|++.+..
T Consensus 53 ~~~~Il~~g~k~~~~V-~~~~n~~~i~~al~~~---qsGqttF~ef~~~la~ 100 (137)
T COG5562 53 SDGVILIKGVKKVVGV-AEVFNTTLIKTALRRH---QSGQTTFEEFCSALAE 100 (137)
T ss_pred cCCEEEeeccccccce-ecccCHHHHHHHHHHH---hcCCccHHHHHHHHHh
Confidence 4555665555544433 2335666666666653 4889999999998864
No 212
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=26.18 E-value=1.1e+02 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=14.9
Q ss_pred CCCCcceeHHHHHHHHHHcCCC
Q psy17054 83 RDNSGNIDKSELSAALTTFGYR 104 (171)
Q Consensus 83 ~~~~g~i~~~el~~~l~~~~~~ 104 (171)
.||+|.+.+-=+..+|...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 4677777777667777766653
No 213
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=25.73 E-value=1.3e+02 Score=16.66 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCC
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGY 103 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~ 103 (171)
..+++.++.+....++.++...-.+..|.
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 45566666565666777777777777654
No 214
>PRK08181 transposase; Validated
Probab=25.65 E-value=2.8e+02 Score=20.53 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=35.2
Q ss_pred CcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q psy17054 86 SGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 86 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 137 (171)
...|+.+.+...|+.+..+-..+.+..+..... .+.++|.+|+..+...
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a~---~~~~~~~e~L~~ll~~ 52 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQAD---KEGWPAARFLAAIAEH 52 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHH
Confidence 456788889999999877655555566655443 4568999999988653
No 215
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.43 E-value=1.6e+02 Score=17.59 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=9.5
Q ss_pred HHHHHHHhhcCCCCCCe
Q psy17054 138 YALTSAFRSYDTDQDGV 154 (171)
Q Consensus 138 ~~~~~~f~~~d~~~~g~ 154 (171)
.++..||+.+..+++..
T Consensus 59 ~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 59 MELEEAFRLYELNKDSE 75 (83)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 34556666665555544
No 216
>PRK03968 DNA primase large subunit; Validated
Probab=25.38 E-value=2.5e+02 Score=22.05 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=39.0
Q ss_pred CCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH
Q psy17054 84 DNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFL 163 (171)
Q Consensus 84 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g~i~l~~~ef~ 163 (171)
...+.+...+...+-+..+..+.+++...+...+ .|.+.+|...+..- .+...+ -++|.|.+++++|+
T Consensus 117 ~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~y------~i~~~df~~l~gs~-sLt~~i-----L~nG~VYLdkee~i 184 (399)
T PRK03968 117 VNAIEIPEKDRKILERVRGRELPPEELEDLLPEY------KIKWKDLLDLIGSG-SLTDLY-----IRNGRVYLRREEFL 184 (399)
T ss_pred cccccccchhhhhhhhhcccccCHHHHHHHhhhc------cccHHHHHHhcCCc-chhhhh-----hcCcEEEecHHHHH
Confidence 3455566666666666666666666666655543 35566666643321 222221 12566667777776
Q ss_pred HHH
Q psy17054 164 DMV 166 (171)
Q Consensus 164 ~~~ 166 (171)
..+
T Consensus 185 ki~ 187 (399)
T PRK03968 185 KLW 187 (399)
T ss_pred HHH
Confidence 654
No 217
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.57 E-value=1.7e+02 Score=17.55 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q psy17054 18 RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69 (171)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~ 69 (171)
++|.|+.++...+-.. +.++..++.+++.+... |..-.+-|..++.
T Consensus 26 ~n~~it~E~y~~V~a~----~T~qdkmRkLld~v~ak--G~~~k~~F~~iL~ 71 (85)
T cd08324 26 KNDYFSTEDAEIVCAC----PTQPDKVRKILDLVQSK--GEEVSEYFLYLLQ 71 (85)
T ss_pred ccCCccHHHHHHHHhC----CCCHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 5778888887766543 55677788888876543 3444555655544
No 218
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.46 E-value=2e+02 Score=19.08 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=22.0
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q psy17054 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDR 119 (171)
Q Consensus 89 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 119 (171)
.|.++++.+...+...+|++++..++...+.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4667777776666666788888877777654
No 219
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=23.44 E-value=1.9e+02 Score=17.66 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q psy17054 18 RSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYV 71 (171)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~~~~~ 71 (171)
++|.++.++...+-.. +.+.+.+..++..... .|.--|..|+..+...
T Consensus 32 ~~gIlT~~~~e~I~a~----~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e~ 79 (94)
T cd08327 32 QEGILTESHVEEIESQ----TTSRRKTMKLLDILPS--RGPKAFHAFLDSLEEF 79 (94)
T ss_pred hCCCCCHHHHHHHHcc----CChHHHHHHHHHHHHh--hChhHHHHHHHHHHHH
Confidence 4667777777766643 3456777777877653 3557788888777543
No 220
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.74 E-value=2e+02 Score=17.90 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=33.2
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy17054 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135 (171)
Q Consensus 89 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 135 (171)
+|.+++..+|...|..++...+..+++.+.. .+.++.+.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 9999999999999999999988888888642 24566665443
No 221
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.73 E-value=2.1e+02 Score=17.96 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=4.9
Q ss_pred CCCCCHHHHHHHHHh
Q psy17054 102 GYRLSDRMIGTMLKK 116 (171)
Q Consensus 102 ~~~~~~~~~~~~~~~ 116 (171)
|...++++++..+..
T Consensus 64 gI~vsd~evd~~i~~ 78 (118)
T PF09312_consen 64 GIKVSDEEVDEAIAN 78 (118)
T ss_dssp T----HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 444444444444444
No 222
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.59 E-value=1.1e+02 Score=14.52 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=14.1
Q ss_pred ceeHHHHHHHHHHcCCCCC
Q psy17054 88 NIDKSELSAALTTFGYRLS 106 (171)
Q Consensus 88 ~i~~~el~~~l~~~~~~~~ 106 (171)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677888888888876643
No 223
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.30 E-value=2.2e+02 Score=21.85 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCceeHHHHHHHHHHH------HHHHHHHhhcCCCCCCeeeeeHHHHHHHH
Q psy17054 122 RGTILFDDFIQCCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMV 166 (171)
Q Consensus 122 ~g~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~l~~~ef~~~~ 166 (171)
.|+|+.+|=+..+... +.+...++.++ +|.+||..++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg--------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG--------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC--------CCHHHHHHHh
Confidence 4666777766666653 22344444433 5777777654
No 224
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.7e+02 Score=19.04 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=22.6
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHHHHHHhhhCCCCCcceeHHHHHHHH
Q psy17054 51 FDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAAL 98 (171)
Q Consensus 51 ~d~~~~g~v~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~el~~~l 98 (171)
|+...+..|+.++...++.. -.-|...|...+.-|+.+-+.+++
T Consensus 21 YnT~TSTYVTL~dla~mVk~----gedF~V~DAKsgeDiT~sVLtQII 64 (193)
T COG5394 21 YNTGTSTYVTLEDLAQMVKE----GEDFRVQDAKSGEDITHSVLTQII 64 (193)
T ss_pred cccCCceeeeHHHHHHHHhc----CCceEEeeccccchhhHHHHHHHH
Confidence 44455566777766655543 123555555544445555554443
No 225
>KOG0455|consensus
Probab=21.76 E-value=1.3e+02 Score=22.41 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHhcCCCCCCC
Q psy17054 6 FLWNIFQGVDRDRSGFISADELQHALSNGTWTPFN 40 (171)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~ 40 (171)
.+.-+|+.|...+-|.++.+++.++.+++++....
T Consensus 179 TLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPD 213 (364)
T KOG0455|consen 179 TLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPD 213 (364)
T ss_pred cHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCC
Confidence 35567888876677899999999999987765433
No 226
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.72 E-value=2.1e+02 Score=18.22 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=15.8
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy17054 90 DKSELSAALTTFGYRLSDRMIGTMLKK 116 (171)
Q Consensus 90 ~~~el~~~l~~~~~~~~~~~~~~~~~~ 116 (171)
+..|++.++..-+..++++.+..++.-
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildi 107 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDI 107 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 345666666666655666666555543
No 227
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.33 E-value=28 Score=16.28 Aligned_cols=8 Identities=50% Similarity=0.434 Sum_probs=3.3
Q ss_pred CCCCCCee
Q psy17054 148 DTDQDGVI 155 (171)
Q Consensus 148 d~~~~g~i 155 (171)
|.+++-.|
T Consensus 9 DTDgn~qI 16 (30)
T PF07492_consen 9 DTDGNFQI 16 (30)
T ss_pred ccCCCcEE
Confidence 44444443
No 228
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=21.29 E-value=63 Score=21.96 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy17054 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117 (171)
Q Consensus 72 ~~~~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 117 (171)
.++..++..+-..+...++..+|...+.- |..+|++++......+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV-GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACGV-GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTTT-T----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcCC-CeEECHHHHHHHHHHH
Confidence 46677777776666667888888877755 7789999888777765
No 229
>KOG0713|consensus
Probab=21.00 E-value=1.1e+02 Score=23.55 Aligned_cols=48 Identities=6% Similarity=0.156 Sum_probs=33.2
Q ss_pred CcHHHHHHHHhhc------CCCCCCcccHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q psy17054 2 PSREFLWNIFQGV------DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMF 51 (171)
Q Consensus 2 ~~~~~~~~~F~~~------d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 51 (171)
+...+++++|+.+ |+|.+...-.++|.++-.+ +..+++++.+...+.+
T Consensus 28 Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~A--YEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 28 ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAA--YEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH--HHHhcCHHHHHHHHhh
Confidence 4567788888776 5666777777777776654 4556677777777665
No 230
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.91 E-value=1.5e+02 Score=17.45 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q psy17054 93 ELSAALTTFGYRLSDRMIGTM 113 (171)
Q Consensus 93 el~~~l~~~~~~~~~~~~~~~ 113 (171)
|+-.+|+.+|..+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 355677888988888875543
No 231
>PF13551 HTH_29: Winged helix-turn helix
Probab=20.87 E-value=2.1e+02 Score=17.21 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=12.6
Q ss_pred cccHHHHHHHH-hcCCCCCCCHHHHHHHHH
Q psy17054 21 FISADELQHAL-SNGTWTPFNPETVRLMIG 49 (171)
Q Consensus 21 ~i~~~e~~~~l-~~~~~~~~~~~~~~~~~~ 49 (171)
..+...+...+ ....+..++...+..++.
T Consensus 80 ~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~ 109 (112)
T PF13551_consen 80 RWTLEELAEWLIEEEFGIDVSPSTIRRILK 109 (112)
T ss_pred cccHHHHHHHHHHhccCccCCHHHHHHHHH
Confidence 34455555432 322334444444444443
No 232
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=20.52 E-value=2.4e+02 Score=23.31 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=34.9
Q ss_pred HHHHhhhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q psy17054 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120 (171)
Q Consensus 75 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 120 (171)
..+-...+..+.|.++.+|...+|..+...-..-+++++++....+
T Consensus 458 ~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 458 RDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 3445556777888899999999999987766556677888887655
No 233
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=20.49 E-value=1.2e+02 Score=17.70 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=17.3
Q ss_pred hCCCCCCceeHHHHHHHHHHH
Q psy17054 117 FDRFGRGTILFDDFIQCCITL 137 (171)
Q Consensus 117 ~d~~~~g~i~~~eF~~~l~~~ 137 (171)
...|..|.|+++.|++.+..+
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l~ 31 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSLT 31 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHHH
Confidence 345779999999999988865
No 234
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=20.05 E-value=2.1e+02 Score=17.12 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=20.4
Q ss_pred CcccHHHHHHHHhcCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy17054 20 GFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGAL 67 (171)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~eF~~~ 67 (171)
-.|.=.+|...+....+.. +..+...+=..+|...++.|+.=||-.+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~-~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPIS-SGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp SEEEHHHHHHHHHHHS--S-SHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCC-chHHHHHHHHHHhcccCCccchhhhHHH
Confidence 3455555555555432222 2233344444455555555555554443
Done!