RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17054
(171 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 60.8 bits (148), Expect = 3e-12
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALW 68
FQ DRD G I +EL L + + P E + + D ++ F +F +
Sbjct: 25 AFQLFDRDSDGLIDRNELGKILRSLGFNPSEAE-INKLFEEIDA-GNETVDFPEFLTVMS 82
Query: 69 KYVT------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGR 122
+ + + F+ FD+D+ G I EL L + G RLSD + +LK++D G
Sbjct: 83 VKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGD 142
Query: 123 GTILFDDFIQCCI 135
G I +++F +
Sbjct: 143 GEIDYEEFKKLIK 155
Score = 59.6 bits (145), Expect = 8e-12
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
+ + F+ FDRD+ G ID++EL L + G+ S+ I + ++ D G T+ F +F+
Sbjct: 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLT 79
Query: 133 CC-------ITLYALTSAFRSYDTDQDGVITI 157
L AF+ +D D DG I+I
Sbjct: 80 VMSVKLKRGDKEEELREAFKLFDKDHDGYISI 111
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
E L F+ D+D G+IS EL+ L + + E V ++ +D+ G I
Sbjct: 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGER-LSDEEVEKLLKEYDEDGDGEID 146
Query: 61 FEDFGALWKY 70
+E+F L K
Sbjct: 147 YEEFKKLIKD 156
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 50.2 bits (121), Expect = 3e-09
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
FR FD+D G I EL AAL + G LS+ I M+++ D+ G G I F++F++
Sbjct: 6 FRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 40.6 bits (96), Expect = 1e-05
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
F+ D+D G ISADEL+ AL + E + MI DK G I FE+F
Sbjct: 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEE-IDEMIREVDKDGDGKIDFEEF 58
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 44 VRLMIGMFDKHNRGSITFEDFGALWK----YVTD--WQNCFRSFDRDNSGNIDKSELSAA 97
+R +FDK G+I+ ++ A K +++ R D+D G ID E
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 98 LT 99
+
Sbjct: 62 MA 63
Score = 36.8 bits (86), Expect = 4e-04
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 113 MLKKFDRFGRGTILFDDFIQCCITLYALTS------AFRSYDTDQDGVITIHYEQFLDMV 166
+ FD+ G GTI D+ +L S R D D DG I +E+FL+++
Sbjct: 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDG--KIDFEEFLELM 62
Score = 27.5 bits (62), Expect = 0.95
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALS 32
S E + + + VD+D G I +E ++
Sbjct: 33 LSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
Score = 25.2 bits (56), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 140 LTSAFRSYDTDQDGVIT 156
L AFR +D D DG I+
Sbjct: 2 LREAFRLFDKDGDGTIS 18
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 51.6 bits (124), Expect = 7e-09
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWK 69
F D D SG I EL+ A+ + + P E ++ MI DK G I FE+F + K
Sbjct: 23 FDLFDTDGSGTIDPKELKVAMRSLGFEPKKEE-IKQMIADVDKDGSGKIDFEEFLDIMTK 81
Query: 70 YVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRG 123
+ + FR FD D +G I L G ++D + M+ + DR G G
Sbjct: 82 KLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDG 141
Query: 124 TILFDDFI 131
I ++F
Sbjct: 142 EISEEEFY 149
Score = 47.8 bits (114), Expect = 2e-07
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FD D SG ID EL A+ + G+ I M+ D+ G G I F++F+ +T
Sbjct: 22 AFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLD-IMT 80
Query: 137 LY--------ALTSAFRSYDTDQDGVITI 157
+ AFR +D D+ G I++
Sbjct: 81 KKLGERDPREEILKAFRLFDDDKTGKISL 109
Score = 36.2 bits (84), Expect = 0.002
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
P +E + + VD+D SG I +E ++ E + +FD G I+
Sbjct: 50 PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISL 109
Query: 62 EDF----GALWKYVTD--WQNCFRSFDRDNSGNIDKSE 93
++ L + +TD Q DR+ G I + E
Sbjct: 110 KNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEE 147
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 51.3 bits (123), Expect = 1e-08
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNPETVRL--MIGMFDKHNRGSITFEDFGAL 67
F D+D G I+ EL + S G NP L MI D G+I F +F L
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQ----NPTEAELQDMINEVDADGNGTIDFPEFLTL 72
Query: 68 W-KYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ + D + F+ FDRD +G I +EL +T G +L+D + M+++ D
Sbjct: 73 MARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD 132
Query: 121 GRGTILFDDFIQ 132
G G I +++F++
Sbjct: 133 GDGQINYEEFVK 144
Score = 42.1 bits (99), Expect = 2e-05
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
+ +++ F FD+D G I EL + + G ++ + M+ + D G GTI F +F
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 131 I-------QCCITLYALTSAFRSYDTDQDGVIT 156
+ + + + AF+ +D D +G I+
Sbjct: 70 LTLMARKMKDTDSEEEIKEAFKVFDRDGNGFIS 102
Score = 39.4 bits (92), Expect = 2e-04
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
S E + F+ DRD +GFISA EL+H ++N E V MI D G I +E
Sbjct: 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYE 140
Query: 63 DF 64
+F
Sbjct: 141 EF 142
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 40.0 bits (94), Expect = 3e-05
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 79 RSFDRDNSGNIDKSELSAALTTFGYRLSD----RMIGTMLKKFDRFGRGTILFDDFIQCC 134
+ D+D G ID EL L G +L+D +I + D+ G G I F++F++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 39.7 bits (93), Expect = 3e-05
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFN---PETVRLMIGMFDKHNRGSITFEDF 64
D+D G+I +EL+ L + E + DK G I+FE+F
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEF 56
Score = 28.1 bits (63), Expect = 0.47
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 115 KKFDRFGRGTILFDDFIQCCITLYA----------LTSAFRSYDTDQDGVITIHYEQFLD 164
K D+ G G I ++ + L + + F D D DG I+ +E+FL+
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRIS--FEEFLE 58
Query: 165 MV 166
+
Sbjct: 59 AM 60
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHAL 31
E + F +D+D G IS +E A+
Sbjct: 32 VEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 25.8 bits (57), Expect = 3.1
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 50 MFDKHNRGSITFEDFGALWKYVTD----------WQNCFRSFDRDNSGNIDKSELSAAL 98
+ DK G I E+ L K + + F D+D G I E A+
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 37.1 bits (87), Expect = 2e-04
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 SGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
G I+ +EL+ AL+ + E V ++ FD G I+FE+F L +
Sbjct: 2 KGLITREELKRALALLG-ISLSEEEVDILFREFDTDGDGKISFEEFCVLLQ 51
Score = 35.6 bits (83), Expect = 0.001
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 86 SGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
G I + EL AL G LS+ + + ++FD G G I F++F
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVL 49
Score = 26.3 bits (59), Expect = 2.0
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 56 RGSITFEDF--------GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALT 99
+G IT E+ +L + D FR FD D G I E L
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDI--LFREFDTDGDGKISFEEFCVLLQ 51
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFG 102
+ + F+ FD+D G I EL AL + G
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 31.4 bits (72), Expect = 0.018
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNG 34
L F+ D+D G+ISA+EL+ AL +
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRSL 29
Score = 24.5 bits (54), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 140 LTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
L AF+ +D D DG I+ E+ + SL
Sbjct: 2 LREAFKLFDKDGDGYIS--AEELRKALRSL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 31.7 bits (73), Expect = 0.013
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 73 DWQNCFRSFDRDNSGNIDKSELSAALTTF 101
+ + F+ FD+D G I E L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 30.5 bits (70), Expect = 0.034
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN 33
L F+ D+D G IS +E + L
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKK 28
Score = 27.0 bits (61), Expect = 0.57
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 143 AFRSYDTDQDGVITIHYEQFLDMVFSL 169
AF+ +D D DG I+ +E+F +++ L
Sbjct: 5 AFKEFDKDGDGKIS--FEEFKELLKKL 29
Score = 25.1 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 44 VRLMIGMFDKHNRGSITFEDFGALWK 69
++ FDK G I+FE+F L K
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLK 27
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 31.2 bits (72), Expect = 0.017
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 73 DWQNCFRSFDRDNSGNIDKSELSAALTTF 101
+ + FR FD+D G ID E L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 28.5 bits (65), Expect = 0.17
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 10 IFQGVDRDRSGFISADELQHALSN 33
F+ D+D G I +E + L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKA 28
Score = 27.3 bits (62), Expect = 0.51
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 143 AFRSYDTDQDGVITIHYEQFLDMVFSL 169
AFR +D D DG I +E+F D++ +L
Sbjct: 5 AFRLFDKDGDGKID--FEEFKDLLKAL 29
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.2 bits (67), Expect = 0.086
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 75 QNCFRSFDRDNSGNIDKSELSAAL 98
++ FR FD + G I K EL L
Sbjct: 2 KDLFRQFDTNGDGKISKEELKRLL 25
Score = 27.6 bits (63), Expect = 0.32
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 10 IFQGVDRDRSGFISADELQHAL 31
+F+ D + G IS +EL+ L
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|202497 pfam02982, Scytalone_dh, Scytalone dehydratase. Scytalone
dehydratases are structurally related to the NTF2 family
(see pfam02136).
Length = 160
Score = 28.7 bits (64), Expect = 1.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 58 SITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRM 109
+ITF D+ L K + +W + + S D D I L +F + + M
Sbjct: 1 TITFHDYLGLKKVLFEWADSYDSKDWDRLRKIIAPTLRIDYRSFLDKKWEAM 52
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 27.8 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 14 VDRDRSGFISADELQHALSNGTWTPFNPETVR 45
VD D I + LQ S WTPF + V+
Sbjct: 290 VDLDEEWTIPKNPLQ---SKKGWTPFEGKKVK 318
>gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class
II, gamma isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. The class II gamma isoform, PI3K-C2gamma, is
expressed in the liver, breast, and prostate. It's
biological function remains unknown.
Length = 354
Score = 27.9 bits (62), Expect = 3.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTP 38
F + RDR+ FI E+++ ++ G P
Sbjct: 238 FGSIKRDRAPFIFTSEMEYFITEGGKKP 265
>gnl|CDD|224189 COG1270, CbiB, Cobalamin biosynthesis protein CobD/CbiB [Coenzyme
metabolism].
Length = 320
Score = 27.7 bits (62), Expect = 3.4
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 101 FGYRLS---DRMIGTMLKKFDRFGRGTILFDD---FIQCCIT--LYALTSAFRSYDTDQD 152
YR D M+G +++ RFG + DD +I +T L AL S +
Sbjct: 173 LLYRAINTLDSMVGYRNERYRRFGWFSARLDDLLNYIPARLTALLLALASLVLGGGPTRQ 232
Query: 153 GV 154
+
Sbjct: 233 AL 234
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 26.0 bits (58), Expect = 3.6
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
FRS D D G I E L G L ++ + D G + ++F
Sbjct: 4 IFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFA 56
>gnl|CDD|236484 PRK09367, PRK09367, histidine ammonia-lyase; Provisional.
Length = 500
Score = 27.4 bits (62), Expect = 3.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 22 ISAD---ELQHAL----SNGTWTPFNPETVRLMI 48
I+ + +LQ L + G P E VRLM+
Sbjct: 68 IAPEDLEQLQRNLVLSHAAGVGEPLPEEVVRLMM 101
>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase.
Length = 521
Score = 27.4 bits (61), Expect = 3.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 96 AALTTFGYRLSDRM-------IGTMLKKFDRFGRGTILFDDFIQCCI---TLYALTSAFR 145
L +FG R+S R+ IG +++D F G I DDF I T A+
Sbjct: 166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH 225
Query: 146 SYDTDQDGVITI 157
D D + +
Sbjct: 226 G-DWIDDPAVPV 236
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 27.5 bits (61), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 23 SADELQHALS-NGTWTPFNPETV 44
S EL+HALS PF+P+
Sbjct: 232 SIGELKHALSGEAKVKPFDPKVT 254
>gnl|CDD|193502 cd03881, M28_Nicastrin, M28 Zn-Peptidase Nicastrin, a main
component of gamma-secretase complex. Peptidase M28
family, Nicastrin subfamily. Nicastrin is a main
component of gamma-secretase complex. Its extracellular
domain sequence resembles aminopeptidases, but certain
catalytic residues are not conserved. It is mainly
localized to the endoplasmic reticulum and Golgi. It is
highly glycosylated (Mr 120 kDa) and is essential for
substrate recognition of the N-terminus of
gamma-secretase substrates derived from APP and Notch.
Nicastrin facilitates substrate cleavage by the
catalytic presenilin subunit in the gamma-secretase
complex. One conserved glutamate is especially
important, probably because this residue forms an ion
pair with the amino terminus of the substrate. This
substrate-binding domain is often called the DAP domain
(named after DYIGS, the amino acid stretch that
modulates amyloid precursor protein (APP) processing,
and Peptidase homologous region). The sequence of the
substrate N-terminus is apparently not critical for the
interaction, but a free amino group is. Thus, nicastrin
can be considered a kind of gatekeeper for the
gamma-secretase complex: type I membrane proteins that
have not shed their ectodomains cannot interact properly
with nicastrin and do not gain access to the active
site.
Length = 308
Score = 27.0 bits (60), Expect = 5.9
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 1 MPSREFLWNIFQGVDRDRSGFIS----ADELQHALSNGTWTPFNPETVRLMIGMFDKHNR 56
+ S F +I G D SGF++ A+ LQ + +M F+ +
Sbjct: 105 LDSTGFFRDIAPGADSSVSGFVALLAAAEALQKVPDEQSDLR------NVMFVFFNGESY 158
Query: 57 GSI 59
I
Sbjct: 159 DYI 161
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 26.9 bits (60), Expect = 6.5
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 109 MIGTMLKKF--DRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVI 155
T + F DRFGR +L I L+ L S+ T
Sbjct: 333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 25.1 bits (56), Expect = 7.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
L+ L N +PE V ++ D + G + F++F
Sbjct: 36 LETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEF 73
>gnl|CDD|214861 smart00857, Resolvase, Resolvase, N terminal domain. The
N-terminal domain of the resolvase family contains the
active site and the dimer interface. The extended arm at
the C-terminus of this domain connects to the C-terminal
helix-turn-helix domain of resolvase.
Length = 148
Score = 26.0 bits (58), Expect = 8.4
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 82 DRDNSG-NIDKSELSAALTTFGYRLSDRMIGTML-KKFDRFGRGTILFDDFIQCC----I 135
D SG D+ L L L I ++ K DR GR ++ +
Sbjct: 41 DEGVSGKKADRPGLQRLLA----DLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEEKGV 96
Query: 136 TLYALTSAFRSYDTDQDGVI 155
L +L T ++
Sbjct: 97 RLVSLKEGILDTSTPAGRLL 116
>gnl|CDD|148602 pfam07088, GvpD, GvpD gas vesicle protein. This family consists of
several archaeal GvpD gas vesicle proteins. GvpD is
thought to be involved in the regulation of gas vesicle
formation.
Length = 484
Score = 26.4 bits (58), Expect = 8.6
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 28 QHALSNGTWTPFNPETVRLMIGMFDK-------HNRGSITFEDFGA 66
Q NGTW P + G+ D NRGS+ D G
Sbjct: 222 QTGPDNGTWEPLANDKAEFSTGIGDLDKILSGGTNRGSVVHLDLGK 267
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.446
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,001,902
Number of extensions: 813795
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1011
Number of HSP's successfully gapped: 69
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.9 bits)