RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17054
(171 letters)
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 227 bits (581), Expect = 2e-77
Identities = 107/169 (63%), Positives = 129/169 (76%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+P + FLWN+FQ VD+DRSG IS ELQ ALSNGTWTPFNP TVR +I MFD+ N+ +
Sbjct: 3 LPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
F +F +WKY+TDWQN FR++DRDNSG IDK+EL AL+ FGYRLSD+ +++KFDR
Sbjct: 63 FSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQ 122
Query: 121 GRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
GRG I FDDFIQ CI L LT FR YDTDQDG I + YEQ+L MVFS+
Sbjct: 123 GRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 171
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 217 bits (554), Expect = 3e-73
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 1/169 (0%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
M + L F+ VD D SG IS EL ALS+ PF+ T ++ M+DK++ G IT
Sbjct: 23 MNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGV-PFSLATTEKLLHMYDKNHSGEIT 81
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
F++F L ++ + FR D G +D +E+ AAL + GY++S++ +++KFDR
Sbjct: 82 FDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQ 141
Query: 121 GRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
RG++ FDD+++ I + + + F YD ++ G +T ++ F+ S+
Sbjct: 142 RRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSI 190
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 209 bits (533), Expect = 2e-69
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ ++ F GVDRDRSG + +EL G +P+T M+ +FD G I+
Sbjct: 47 LDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGI-RLSPQTALRMMRIFDTDFNGHIS 105
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
F +F A++K++ N F R SG ++ E+ AL G+ ++ R + + F R
Sbjct: 106 FYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFAR- 164
Query: 121 GRGTILFDDFIQCCITLYALTSAFR-----SYDTDQDGVITIHYEQFLDMVFSL 169
G + +I C SA++ Y + + +FLD+V SL
Sbjct: 165 GMAFCDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGKFLDVVTSL 218
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 197 bits (503), Expect = 2e-65
Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALS----NGTWTPFNPETVRLMIGMFDKHNRG 57
+++ L+ F + G I ADELQ L+ G + PFN ET RLM+ M D+ G
Sbjct: 30 QTQDPLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSG 88
Query: 58 SITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117
++ F +F LW + W+ F SFD D SG +D EL ALTT G+RLS + + ++ K++
Sbjct: 89 TMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148
Query: 118 DRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
G I FDD+I CC+ L ALT +FR DT Q GV+ Y+ F+ V S+
Sbjct: 149 ST--NGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
Score = 64.0 bits (156), Expect = 2e-13
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
F D DRSG + ELQ AL+ + +P+ V + + G IT
Sbjct: 99 WAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFR-LSPQAVNSIAKRYST--NGKIT 155
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNI 89
F+D+ A + + FR D G +
Sbjct: 156 FDDYIACCVKLRALTDSFRRRDTAQQGVV 184
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 186 bits (475), Expect = 1e-61
Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALS----NGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
++ F V + G + A+ELQ L+ NGT++PF+ ET R+MI M D+ + G + F
Sbjct: 2 VYTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 63 DFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGR 122
F LW + W+ F + D+D SG ++ EL A+ GYRLS + + T++K++ +
Sbjct: 61 AFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--N 118
Query: 123 GTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
G I FDD++ CC+ L ALT FR D Q G Y+ FL ++
Sbjct: 119 GRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 165
Score = 61.2 bits (149), Expect = 1e-12
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ F VD+D SG + EL+ A+ + +P+T+ ++ + K+ G I
Sbjct: 66 WAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYR-LSPQTLTTIVKRYSKN--GRIF 122
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNI 89
F+D+ A + + FR D G+
Sbjct: 123 FDDYVACCVKLRALTDFFRKRDHLQQGSA 151
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 185 bits (472), Expect = 5e-61
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALS----NGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ L+ F V + G I ADELQ L+ G + PFN ET RLM+ M D+ G++
Sbjct: 2 DPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
F +F LW + W+ F SFD D SG +D EL ALTT G+RL+ + + ++ K++
Sbjct: 61 FNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS 120
Query: 121 GRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
G+ I FDD+I CC+ L ALT +FR D+ Q G++ Y+ F+ V ++
Sbjct: 121 GK--ITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 167
Score = 62.0 bits (151), Expect = 6e-13
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
F D DRSG + ELQ AL+ + NP+TV + + G IT
Sbjct: 68 WAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFR-LNPQTVNSIAKRYS--TSGKIT 124
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNI 89
F+D+ A + + FR D G +
Sbjct: 125 FDDYIACCVKLRALTDSFRRRDSAQQGMV 153
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 178 bits (453), Expect = 4e-58
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWT-------PFNPETVRLMIGMFDKHNRG 57
+F + D +SA EL + L+ F +T R M+ + D G
Sbjct: 4 RQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 58 SITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117
+ FE+F LW + WQ ++ FD D SG I SEL A G+ L++ + +++++
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRY 122
Query: 118 DRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
G + FD+FI C + L A+ AF+S D D G I ++ +++L +
Sbjct: 123 SD-EGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT 170
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 183 bits (465), Expect = 2e-54
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTW-------TPFNPETVRLMIGMFDKHNRGSI 59
+F + +SA EL + L+ F +T R M+ + D G +
Sbjct: 733 FRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL 791
Query: 60 TFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDR 119
FE+F LW + WQ ++ F+ D SG I +EL A G+ L+ + +++++
Sbjct: 792 GFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSD 851
Query: 120 FGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFS 168
G + FD+FI C + L A+ AFRS D + G I ++ +++L +
Sbjct: 852 -ETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLTMY 899
Score = 158 bits (399), Expect = 2e-45
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALS-------NGTWTPFNPETVRLMIGMFDK 53
+ +F + D IS ELQ L+ + F+ E+ R M+ + D+
Sbjct: 530 EEIDDNFKTLFSKLAGDD-MEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDR 588
Query: 54 HNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113
G + +F LW + ++ FR FD D SG++ E+ A+ G++L ++ +
Sbjct: 589 DGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVI 648
Query: 114 LKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSLKI 171
+ +F I FD+F++C + L L F+ D + G I + +L K+
Sbjct: 649 VARFAD-DELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSFSVLGKL 705
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 168 bits (425), Expect = 2e-49
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWT-------PFNPETVRLMIGMFDK 53
+ +F + ISA ELQ L F+ ET ++M+ M D+
Sbjct: 528 EDIGDGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDE 586
Query: 54 HNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113
G + ++F LW + +Q +R D D SG ++ E+ AL G++L ++ +
Sbjct: 587 DGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVI 646
Query: 114 LKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
+ +F I FD+F++C + L L F+ D + G I + +L
Sbjct: 647 VARFAD-DELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSFS 698
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 152 bits (384), Expect = 1e-47
Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 13/175 (7%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWT-----PFNPETVRLMIGMFDKHN 55
M S + G+ R I A +LQ L+ T F+ + R ++ + +
Sbjct: 1 MGSSHHHHHHSSGL-VPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKV 59
Query: 56 RGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALT----TFGYRLSDRMIG 111
G + E+F LWK + +Q+ F+ + G + S+L A+ G +S ++
Sbjct: 60 NGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLH 118
Query: 112 TMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
+ ++ G + F + + L A+ FR+ D G + + +++ +V
Sbjct: 119 LVTLRYSD-SVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKG-LYLTEMEWMSLV 171
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 150 bits (381), Expect = 2e-45
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 2/154 (1%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
L +F SG S +L+ L+ ++ + M + +G +++
Sbjct: 122 NILRQLFLSSAVSGSGKFSFQDLKQVLAKYAD-TIPEGPLKKLFVMVENDTKGRMSYITL 180
Query: 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
A+ + FR D +++G + + E G+ + + + D
Sbjct: 181 VAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDD 239
Query: 125 ILFDDFIQCCITLYALTSAFRSYDTDQDGVITIH 158
+ F +++ + L L + D D+ G ++
Sbjct: 240 VGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKE 273
Score = 111 bits (280), Expect = 2e-30
Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 3/139 (2%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
L F+ +D + +G +S E + + + D+ +
Sbjct: 184 ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD--KKSVQDALFRYADEDESDDVG 241
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYR-LSDRMIGTMLKKFDR 119
F ++ L + + + D D SG + K E+ L + + D
Sbjct: 242 FSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDV 301
Query: 120 FGRGTILFDDFIQCCITLY 138
++ + +F+ + ++
Sbjct: 302 DDSKSLSYQEFVMLVLLMF 320
Score = 96.0 bits (239), Expect = 2e-24
Identities = 19/159 (11%), Positives = 44/159 (27%), Gaps = 4/159 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTW--TPFNPETVRLMIGMFDKHNRGSIT 60
+ D+ A E + + ++ + G
Sbjct: 49 KEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNR 108
Query: 61 FEDFGALWKY--VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFD 118
+ + F S SG +L L + + + + + +
Sbjct: 109 LRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVE 168
Query: 119 RFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITI 157
+G + + + L AL + FR DT+ +G ++
Sbjct: 169 NDTKGRMSYITLVAVANDLAALVADFRKIDTNSNGTLSR 207
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 85.7 bits (213), Expect = 9e-22
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 24/171 (14%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
F D+D G I+ EL + S G NP ++ MI D G+I F +
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLG----QNPTEAELQDMINEVDADGNGTIDFPE 68
Query: 64 FGAL-WKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116
F + + + D + FR FD+D +G I +EL +T G +L+D + M+++
Sbjct: 69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 128
Query: 117 FDRFGRGTILFDDFIQCCITLYA----------LTSAFRSYDTDQDGVITI 157
D G G + +++F+Q + + R+ +
Sbjct: 129 ADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSVL 179
Score = 27.1 bits (61), Expect = 2.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D DG IT
Sbjct: 16 AFSLFDKDGDGTITTK 31
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 81.1 bits (201), Expect = 7e-20
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 23/170 (13%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
L +F+ +D D SG I+ DEL+ L E ++ ++ D G+I + +F A
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE-IKDLMDAADIDKSGTIDYGEFIA 70
Query: 67 LWKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
++ + F FD+D SG I E+ A FG L D I M+K+ D+
Sbjct: 71 ATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQD 128
Query: 121 GRGTILFDDFI--------------QCCITLYALTSAFRSYDTDQDGVIT 156
G I + +F + L A D + VI
Sbjct: 129 NDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
Score = 66.5 bits (163), Expect = 2e-14
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F+ D DNSG I EL L G L + I ++ D GTI + +FI + L
Sbjct: 16 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHL 75
Query: 138 YALTS------AFRSYDTDQDGVITI 157
L AF +D D G IT+
Sbjct: 76 NKLEREENLVSAFSYFDKDGSGYITL 101
Score = 54.2 bits (131), Expect = 7e-10
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
E L + F D+D SG+I+ DE+Q A + + + MI D+ N G I +
Sbjct: 80 REENLVSAFSYFDKDGSGYITLDEIQQACKD---FGLDDIHIDDMIKEIDQDNDGQIDYG 136
Query: 63 DFGALWKYVTDWQN--------------CFRSFDRDNSGNIDKSEL 94
+F A+ + D ++ I+
Sbjct: 137 EFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 182
Score = 26.8 bits (60), Expect = 2.7
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
F+ DTD G IT
Sbjct: 15 LFKMIDTDNSGTITFD 30
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 81.8 bits (202), Expect = 1e-19
Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 42/194 (21%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTP-----FNPETVRLMIGMFDKHNRGSITF 61
+ I+ D D SG++ ELQ+ + ++ + + + + G I
Sbjct: 18 FFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGI 77
Query: 62 EDFGALWKYVTDWQNC---------------FRSFDRDNSGNIDKSELSAALTTFGYRLS 106
+ + ++ +R +D D+SG I+ EL L + +
Sbjct: 78 VELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKAN 137
Query: 107 DRM--------IGTMLKKFDRFGRGTILFDDFIQ--------------CCITLYALTSAF 144
+ MLK FD G + + + + AF
Sbjct: 138 KTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAF 197
Query: 145 RSYDTDQDGVITIH 158
YD D +G I +
Sbjct: 198 ELYDQDGNGYIDEN 211
Score = 78.0 bits (192), Expect = 4e-18
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 26/157 (16%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-------GTWTPFNPETVRLMIGMFDKHN 55
S E ++ D D SGFI +EL++ L + E LM+ +FD +N
Sbjct: 101 SCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNN 160
Query: 56 RGSITFEDFGALWK--------------YVTDWQNCFRSFDRDNSGNIDKSELSAALTTF 101
G + + L ++ F +D+D +G ID++EL A L
Sbjct: 161 DGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDL 220
Query: 102 GYRLSDRMIGTMLKKF-----DRFGRGTILFDDFIQC 133
+ + + + G + D
Sbjct: 221 CEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALI 257
Score = 38.3 bits (89), Expect = 5e-04
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMI-----GMFDKHN 55
+ F+ D+D +G+I +EL L + E I + +
Sbjct: 187 KMCGKEFNKAFELYDQDGNGYIDENELDALLKD-LCEKNKQELDINNISTYKKNIMALSD 245
Query: 56 RGSITFEDFGAL 67
G + D +
Sbjct: 246 GGKLYRTDLALI 257
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 77.1 bits (191), Expect = 8e-19
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
+ F D D +G I EL+ A+ + G F P E ++ MI DK G + F D
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRALG----FEPKKEEIKKMISEIDKEGTGKMNFGD 63
Query: 64 FGALWKYVTDWQN----------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113
F + +T + F+ FD D +G I L G L+D + M
Sbjct: 64 FLTV---MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEM 120
Query: 114 LKKFDRFGRGTILFDDFIQ 132
+ + DR G G + +F++
Sbjct: 121 IDEADRDGDGEVSEQEFLR 139
Score = 66.0 bits (162), Expect = 1e-14
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FD D +G ID EL A+ G+ I M+ + D+ G G + F DF+
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQ 70
Query: 137 LYA-------LTSAFRSYDTDQDGVITI 157
+ + AF+ +D D+ G I+
Sbjct: 71 KMSEKDTKEEILKAFKLFDDDETGKISF 98
Score = 27.0 bits (61), Expect = 2.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D G I +
Sbjct: 11 AFDLFDADGTGTIDVK 26
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 76.9 bits (190), Expect = 1e-18
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGAL--- 67
F D+ G I+ D L L + P N ++ + S+T + L
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEV 69
Query: 68 ---------WKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFD 118
D+ F+ FD++++G + +L LT G +L+D + +LK +
Sbjct: 70 NEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVE 129
Query: 119 RFGRGTILFDDFIQ 132
G I + FI+
Sbjct: 130 VDSNGEIDYKKFIE 143
Score = 57.2 bits (139), Expect = 3e-11
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 21/103 (20%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK-FDRFGRGTILFDD 129
++ F FD+ G I K L L GY +++++ ++ ++ D
Sbjct: 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQ 62
Query: 130 FIQCCITLYA----------------LTSAFRSYDTDQDGVIT 156
L AF+ +D + G ++
Sbjct: 63 I----TGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVS 101
Score = 26.0 bits (58), Expect = 4.3
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 143 AFRSYDTDQDGVITIH 158
F +D G I
Sbjct: 9 IFTLFDKKGQGAIAKD 24
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 77.2 bits (191), Expect = 1e-18
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
F D D G IS EL + G NP E + +I D+ G+I FE+
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLG----QNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 64 FGALW------KYVTDWQ----NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113
F + + NCFR FD++ G ID EL L G +++ I +
Sbjct: 78 FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 137
Query: 114 LKKFDRFGRGTILFDDFIQ 132
+K D+ G I FD+F++
Sbjct: 138 MKDSDKNNDGRIDFDEFLK 156
Score = 68.0 bits (167), Expect = 3e-15
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FD D G+I EL + G + + ++++ D G GTI F++F+ +
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR 84
Query: 137 LYALTS----------AFRSYDTDQDGVITI 157
+ FR +D + DG I I
Sbjct: 85 QMKEDAKGKSEEELANCFRIFDKNADGFIDI 115
Score = 44.1 bits (105), Expect = 3e-06
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
S E L N F+ D++ GFI +EL L G E + ++ DK+N G I F
Sbjct: 94 SEEELANCFRIFDKNADGFIDIEELGEILRATG--EHVTEEDIEDLMKDSDKNNDGRIDF 151
Query: 62 EDF 64
++F
Sbjct: 152 DEF 154
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D G I+
Sbjct: 25 AFDMFDADGGGDISTK 40
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 77.2 bits (191), Expect = 1e-18
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F D + GF+ EL+ A+ + G F + +I +D R + ++DF +
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALG----FELPKREILDLIDEYDSEGRHLMKYDDFYIV 84
Query: 68 W-KYVTDW------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ + + F+ FD D++G I L G L+D + M+++FD
Sbjct: 85 MGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLD 144
Query: 121 GRGTILFDDFIQ 132
G G I ++FI
Sbjct: 145 GDGEINENEFIA 156
Score = 67.2 bits (165), Expect = 8e-15
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F FD +N G +D EL A+ G+ L R I ++ ++D GR + +DDF
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88
Query: 138 YA-------LTSAFRSYDTDQDGVITI 157
+ AF+ +D D G I+I
Sbjct: 89 ILKRDPLDEIKRAFQLFDDDHTGKISI 115
Score = 43.7 bits (104), Expect = 4e-06
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ + FQ D D +G IS L+ G E +R MI FD G I
Sbjct: 94 PLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG--ETLTDEELRAMIEEFDLDGDGEINE 151
Query: 62 EDF 64
+F
Sbjct: 152 NEF 154
Score = 26.7 bits (60), Expect = 3.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D + DG + H
Sbjct: 28 AFSLFDMNNDGFLDYH 43
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 77.2 bits (191), Expect = 1e-18
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
+ F D D SG I A EL+ A+ + G F P E ++ MI DK G+I FE+
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRALG----FEPKKEEIKKMISEIDKDGSGTIDFEE 85
Query: 64 FGALW-KYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116
F + + + + FR FD DNSG I +L G L++ + M+ +
Sbjct: 86 FLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAE 145
Query: 117 FDRFGRGTILFDDFIQ 132
DR I D+FI+
Sbjct: 146 ADRNDDNEIDEDEFIR 161
Score = 66.1 bits (162), Expect = 2e-14
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F FD D SG ID EL A+ G+ I M+ + D+ G GTI F++F+
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93
Query: 138 YA-------LTSAFRSYDTDQDGVITI 157
+ AFR +D D G ITI
Sbjct: 94 MGERDSREEILKAFRLFDDDNSGTITI 120
Score = 43.3 bits (103), Expect = 5e-06
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
SRE + F+ D D SG I+ +L+ G E ++ MI D+++ I
Sbjct: 99 SREEILKAFRLFDDDNSGTITIKDLRRVAKELG--ENLTEEELQEMIAEADRNDDNEIDE 156
Query: 62 EDF 64
++F
Sbjct: 157 DEF 159
Score = 27.2 bits (61), Expect = 2.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +DTD G I
Sbjct: 33 AFDLFDTDGSGTIDAK 48
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 81.1 bits (200), Expect = 1e-18
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
F D+D G I+ EL + S G NP ++ MI D G+I F +
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLG----QNPTEAELQDMINEVDADGNGTIDFPE 369
Query: 64 FGAL-WKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKK 116
F + + + D + FR FD+D +G I +EL +T G +L+D + M+++
Sbjct: 370 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 429
Query: 117 FDRFGRGTILFDDFIQ 132
D G G + +++F+Q
Sbjct: 430 ADIDGDGQVNYEEFVQ 445
Score = 79.6 bits (196), Expect = 4e-18
Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 29/163 (17%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70
+D + + E++ R+ + D G+I +
Sbjct: 253 RTIFFKDDGNYKTRAEVKFEGDT--------LVNRIELKGIDFKEDGNILGHKLEYNTRD 304
Query: 71 ------VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
+ +++ F FD+D G I EL + + G ++ + M+ + D G GT
Sbjct: 305 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 364
Query: 125 ILFDDFIQCCITLYA-----------LTSAFRSYDTDQDGVIT 156
I F +F +T+ A + AFR +D D +G I+
Sbjct: 365 IDFPEF----LTMMARKMKDTDSEEEIREAFRVFDKDGNGYIS 403
Score = 45.3 bits (107), Expect = 3e-06
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMI-----GTMLKKFDRFGRGTILFDDFIQ 132
F +D+ ++E+ T R+ + I G +L + L ++ I
Sbjct: 253 RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEEQIA 312
Query: 133 CCITLYALTSAFRSYDTDQDGVITIH 158
AF +D D DG IT
Sbjct: 313 ------EFKEAFSLFDKDGDGTITTK 332
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 78.4 bits (193), Expect = 1e-18
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMF--------DKH 54
++ +F+ D++ +G + DE+ F + F
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLE 106
Query: 55 NRGSITFEDFGAL---WKYVTDWQNC---FRSFDRDNSGNIDKSELSAALTTFG-YRLSD 107
N+GS F +F Y+ D+ F D + +D+ E A+ +
Sbjct: 107 NKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKV 166
Query: 108 RMIGTMLKKFDRFGRGTILFDDFIQ 132
+ K+ D+ G G++ FD+F
Sbjct: 167 EDPAALFKELDKNGTGSVTFDEFAA 191
Score = 57.6 bits (139), Expect = 6e-11
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ L +F +D + + +E + A+ E + DK+ GS+T
Sbjct: 126 IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVT 185
Query: 61 FEDF 64
F++F
Sbjct: 186 FDEF 189
Score = 53.0 bits (127), Expect = 4e-09
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 78 FRSFDRDNSGNIDKSELSAALT-TFGYRLSDRMIGTMLKK---------FDRFGRGTILF 127
F+ FD++ +G + E+ + + + K+ +G+ F
Sbjct: 54 FKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDF 113
Query: 128 DDFIQCCITLYALTS------AFRSYDTDQDGVITI 157
+F++ + L + F D + ++
Sbjct: 114 VEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDE 149
Score = 26.0 bits (57), Expect = 6.5
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 21/96 (21%)
Query: 96 AALTTFGYRLSDRMI-------GTMLKKFDRFGRGTILFDDFIQCCITLYALT------- 141
A + + KKFD+ G + +D+ C+ + L
Sbjct: 29 EAWERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVR 88
Query: 142 -------SAFRSYDTDQDGVITIHYEQFLDMVFSLK 170
R+ + + + + +FL+ L
Sbjct: 89 DITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLC 124
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 76.4 bits (189), Expect = 2e-18
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F D+D G I+ EL + S G NP ++ MI D G+I F +F +L
Sbjct: 16 FALFDKDGDGTITTKELGTVMRSLG----QNPTEAELQDMINEVDADGNGTIDFPEFLSL 71
Query: 68 WKYVTDWQN----------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKF 117
+ F+ FDRD +G I +EL +T G +L+D + M+++
Sbjct: 72 ---MARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128
Query: 118 DRFGRGTILFDDFIQ 132
D G G I +++F++
Sbjct: 129 DIDGDGHINYEEFVR 143
Score = 64.4 bits (158), Expect = 6e-14
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134
+ F FD+D G I EL + + G ++ + M+ + D G GTI F +F
Sbjct: 13 KEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF---- 68
Query: 135 ITLYA-----------LTSAFRSYDTDQDGVIT 156
++L A L AF+ +D D +G+I+
Sbjct: 69 LSLMARKMKEQDSEEELIEAFKVFDRDGNGLIS 101
Score = 31.7 bits (73), Expect = 0.051
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 33/87 (37%)
Query: 15 DRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTD 73
DRD +G ISA EL+H ++N G + V MI
Sbjct: 93 DRDGNGLISAAELRHVMTNLGE--KLTDDEVDEMI------------------------- 125
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTT 100
R D D G+I+ E + +
Sbjct: 126 -----READIDGDGHINYEEFVRMMVS 147
Score = 27.4 bits (62), Expect = 1.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D DG IT
Sbjct: 15 AFALFDKDGDGTITTK 30
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 75.2 bits (186), Expect = 7e-18
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
L +F +D D+SG I+ +EL+ L E + ++ D N G+I +++F A
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESE-ILDLMQAADVDNSGTIDYKEFIA 87
Query: 67 LWKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
++ + F FD+D SG I EL A FG + D I +++ D+
Sbjct: 88 ATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQD 145
Query: 121 GRGTILFDDFIQ 132
G I +++F+
Sbjct: 146 NDGRIDYNEFVA 157
Score = 68.7 bits (169), Expect = 2e-15
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F D D SG I EL A L G L + I +++ D GTI + +FI + L
Sbjct: 33 FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHL 92
Query: 138 YALTS------AFRSYDTDQDGVITI 157
+ AF +D D G IT
Sbjct: 93 NKIEREDHLFAAFTYFDKDGSGYITP 118
Score = 46.0 bits (110), Expect = 5e-07
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
+ L+ F D+D SG+I+ DELQ A + ++ D+ N G I +
Sbjct: 97 REDHLFAAFTYFDKDGSGYITPDELQQACEE---FGVEDVRIEELMRDVDQDNDGRIDYN 153
Query: 63 DF 64
+F
Sbjct: 154 EF 155
Score = 27.5 bits (62), Expect = 1.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 143 AFRSYDTDQDGVITIH 158
F D D+ G IT
Sbjct: 32 MFNMIDADKSGQITFE 47
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 73.4 bits (181), Expect = 4e-17
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 7 LWNIFQGVDRD-RSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFE 62
F G IS EL + G NP E ++ MI D+ G++ F+
Sbjct: 20 FKAAFDIFVLGAEDGSISTKELGKVMRMLG----QNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 63 DFGALWKYVTDWQN----------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGT 112
+F + + FR FD++ G ID EL L G +++ I
Sbjct: 76 EFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEE 135
Query: 113 MLKKFDRFGRGTILFDDFIQ 132
++K D+ G I +D+F++
Sbjct: 136 LMKDGDKNNDGRIDYDEFLE 155
Score = 62.6 bits (153), Expect = 4e-13
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 78 FRSFDRD-NSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F F G+I EL + G + + M+ + D G GT+ FD+F+ +
Sbjct: 24 FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR 83
Query: 137 LYA----------LTSAFRSYDTDQDGVITI 157
L+ FR +D + DG I +
Sbjct: 84 SMKDDSKGKSEEELSDLFRMFDKNADGYIDL 114
Score = 43.3 bits (103), Expect = 4e-06
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSI 59
S E L ++F+ D++ G+I +EL+ L G + + ++ DK+N G I
Sbjct: 91 GKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG--ETITEDDIEELMKDGDKNNDGRI 148
Query: 60 TFEDF 64
+++F
Sbjct: 149 DYDEF 153
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 72.6 bits (179), Expect = 4e-17
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
L F+ D+D+ G+I+ +L + + G + P + + + + G + F+D
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTMG----YMPTEMELIELSQQINMNLGGHVDFDD 68
Query: 64 FGAL-----------WKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF-GYRLSDRMIG 111
F L V + ++ FR FD + G I SEL A+ G+++ R I
Sbjct: 69 FVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIE 128
Query: 112 TMLKKFDRFGRGTILFDDFIQ 132
+++ D G G + F++F++
Sbjct: 129 EIIRDVDLNGDGRVDFEEFVR 149
Score = 67.2 bits (165), Expect = 7e-15
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
FR FD+D G I+ +L + T GY ++ + + ++ + G + FDDF++
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGP 75
Query: 137 LYA-----------LTSAFRSYDTDQDGVITI 157
L AFR +DT+ DG I+
Sbjct: 76 KLLAETADMIGVKELRDAFREFDTNGDGEIST 107
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
M + L + F+ D + G IS EL+ A+ + +I D + G +
Sbjct: 84 MIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVD 143
Query: 61 FEDF 64
FE+F
Sbjct: 144 FEEF 147
Score = 26.7 bits (60), Expect = 2.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 143 AFRSYDTDQDGVITIH 158
AFR +D D+DG I
Sbjct: 16 AFREFDKDKDGYINCR 31
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 72.1 bits (178), Expect = 7e-17
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F D+D SG ISA EL + S G +P V ++ D +I F +F AL
Sbjct: 17 FALFDKDNSGSISASELATVMRSLG----LSPSEAEVADLMNEIDVDGNHAIEFSEFLAL 72
Query: 68 WKYVT-------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ F+ FD++ G I +EL LT+ G +L+D + ML++
Sbjct: 73 MSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSD- 131
Query: 121 GRGTILFDDFIQ 132
G G I F
Sbjct: 132 GSGEINIKQFAA 143
Score = 64.4 bits (158), Expect = 6e-14
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FD+DNSG+I SEL+ + + G S+ + ++ + D G I F +F +
Sbjct: 16 AFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF----LA 71
Query: 137 LYA-----------LTSAFRSYDTDQDGVITI 157
L + L AF+ +D + DG+I+
Sbjct: 72 LMSRQLKCNDSEQELLEAFKVFDKNGDGLISA 103
Score = 27.8 bits (63), Expect = 1.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D G I+
Sbjct: 16 AFALFDKDNSGSISAS 31
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 72.5 bits (178), Expect = 1e-16
Identities = 27/144 (18%), Positives = 40/144 (27%), Gaps = 21/144 (14%)
Query: 10 IFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVR-LMIGMF---DKHNRGSITF 61
Q VD GFIS ++ + + E R + + I+
Sbjct: 19 RMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISV 78
Query: 62 EDFGALW-------------KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDR 108
E+ V + D D G + E A L G L+D
Sbjct: 79 EEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDD 138
Query: 109 MIGTMLKKFDRFGRGTILFDDFIQ 132
T D G I D+F+
Sbjct: 139 KAITCFNTLDFNKNGQISRDEFLV 162
Score = 50.9 bits (122), Expect = 1e-08
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
+ ++ +D D+ G++S E + L + D + G I+ +
Sbjct: 100 AVIQSLIMYDCIDTDKDGYVSLPEFKAFLQA-VGPDLTDDKAITCFNTLDFNKNGQISRD 158
Query: 63 DFGALWK 69
+F
Sbjct: 159 EFLVTVN 165
Score = 49.0 bits (117), Expect = 6e-08
Identities = 9/111 (8%), Positives = 26/111 (23%), Gaps = 22/111 (19%)
Query: 69 KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFG---------YRLSDRMIGTMLKKFDR 119
++ + + D G I + + + + + +
Sbjct: 11 YHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGL 70
Query: 120 FGRGTILFDDFIQCCITLYA-------------LTSAFRSYDTDQDGVITI 157
I ++ + DTD+DG +++
Sbjct: 71 APGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSL 121
Score = 27.4 bits (61), Expect = 1.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 140 LTSAFRSYDTDQDGVITIH 158
+ + + D DG I+
Sbjct: 16 MKTRMQRVDVTGDGFISRE 34
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 72.7 bits (179), Expect = 1e-16
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFG 65
L + F +D D G+I+ ++L+ L +G P L++ D G I + +F
Sbjct: 54 LKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP---YNFDLLLDQIDSDGSGKIDYTEFI 110
Query: 66 AL---WKYVTD--WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLS-----DRMIGTMLK 115
A K ++ FR FD DN G I +EL+ L + + + M++
Sbjct: 111 AAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIR 170
Query: 116 KFDRFGRGTILFDDFIQ 132
D+ G I F +F +
Sbjct: 171 DVDKNNDGKIDFHEFSE 187
Score = 65.3 bits (160), Expect = 6e-14
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F D D G I K +L L G +L +L + D G G I + +FI +
Sbjct: 58 FLVLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLLDQIDSDGSGKIDYTEFIAAALDR 116
Query: 138 YALT-----SAFRSYDTDQDGVITI 157
L+ AFR +D D DG IT
Sbjct: 117 KQLSKKLIYCAFRVFDVDNDGEITT 141
Score = 51.1 bits (123), Expect = 1e-08
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVRLMIGMFDKHNRGS 58
S++ ++ F+ D D G I+ EL H L N G T + V+ MI DK+N G
Sbjct: 120 SKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGK 179
Query: 59 ITFEDF 64
I F +F
Sbjct: 180 IDFHEF 185
Score = 28.0 bits (63), Expect = 1.3
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 140 LTSAFRSYDTDQDGVITI 157
L S F D D G IT
Sbjct: 54 LKSTFLVLDEDGKGYITK 71
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 71.8 bits (177), Expect = 1e-16
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 19/141 (13%)
Query: 7 LWNIFQGVDR-DRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFE 62
L F+ + + SG +S D++ L G T+R +I FD G I F+
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLG----IQQTKSTIRQLIDEFDPFGNGDIDFD 70
Query: 63 DFGALW-KYVTDWQN----------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIG 111
F + +++ + N FR +D++ +G I + L LS +
Sbjct: 71 SFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLD 130
Query: 112 TMLKKFDRFGRGTILFDDFIQ 132
M+ + D G GT+ F++F+
Sbjct: 131 AMIDEIDADGSGTVDFEEFMG 151
Score = 63.0 bits (154), Expect = 3e-13
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 78 FRSFDR-DNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
FR F+ + SG + ++ L G + + I ++ +FD FG G I FD F
Sbjct: 19 FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGAR 78
Query: 137 LYA-----------LTSAFRSYDTDQDGVITI 157
L AFR YD + +G I+
Sbjct: 79 FLGEEVNPEQMQQELREAFRLYDKEGNGYIST 110
Score = 43.7 bits (104), Expect = 3e-06
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
++ L F+ D++ +G+IS D ++ L+ + E + MI D G++ F
Sbjct: 89 MQQELREAFRLYDKEGNGYISTDVMREILAELD--ETLSSEDLDAMIDEIDADGSGTVDF 146
Query: 62 EDF 64
E+F
Sbjct: 147 EEF 149
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 71.9 bits (177), Expect = 1e-16
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
F +D++ G I D+L+ + G E + MI K G I F F +
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAAMGRLNV-KNEELDAMI----KEASGPINFTVFLTM-- 83
Query: 70 YVTDW----------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDR 119
+ F+ D D G+I KS L LTT G R + I M F
Sbjct: 84 -FGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPP 142
Query: 120 FGRGTILFDDFIQ 132
G + + +
Sbjct: 143 DVAGNVDYKNICY 155
Score = 54.5 bits (132), Expect = 5e-10
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 18/91 (19%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F D++ G IDK +L G L + G I F F +T
Sbjct: 30 AFTVIDQNADGIIDKDDLRETFAAMGRLNVKN---EELDAMIKEASGPINFTVF----LT 82
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
++ + AF+ D D G I
Sbjct: 83 MFGEKLKGADPEDVIMGAFKVLDPDGKGSIK 113
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ + F+ +D D G I L+ L+ G F PE ++ M F G++ +
Sbjct: 93 PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG--GRFTPEEIKNMWAAFPPDVAGNVDY 150
Query: 62 EDF 64
++
Sbjct: 151 KNI 153
Score = 27.2 bits (61), Expect = 1.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF D + DG+I
Sbjct: 30 AFTVIDQNADGIIDKD 45
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 72.8 bits (179), Expect = 1e-16
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
FR DRD S ++D E L G L + +K+DR G GT+ ++F++
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 138 YALTS------AFRSYDTDQDGVITI 157
+ AF D DGV+T+
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTV 128
Score = 68.9 bits (169), Expect = 3e-15
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 23/161 (14%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFG 65
L F+ +DRD S + ADE + L G + + +D++ G++ E+F
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGL--VLDQAEAEGVCRKWDRNGSGTLDLEEFL 96
Query: 66 ALWKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTF-------GYRLSDRMIGT 112
+ F DR G + +L + G D ++
Sbjct: 97 RALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRR 156
Query: 113 MLKKFD-RFGRGTILFDDFIQCCITLYALTSAFRSYDTDQD 152
L FD G + +F Y+ SA S +TD++
Sbjct: 157 FLDNFDSSEKDGQVTLAEFQD----YYSGVSA--SMNTDEE 191
Score = 42.3 bits (100), Expect = 1e-05
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFN------PETVRLMIGMFDKHNR 56
+ F +DR G ++ D+L+ S E +R + FD +
Sbjct: 107 REAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEK 166
Query: 57 -GSITFEDF 64
G +T +F
Sbjct: 167 DGQVTLAEF 175
Score = 25.8 bits (57), Expect = 8.2
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 143 AFRSYDTDQDGVITIH 158
FR D D +
Sbjct: 42 FFRQLDRDGSRSLDAD 57
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 71.4 bits (176), Expect = 1e-16
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F+ D +R+GFI+ + LQ L G M D G I F +F ++
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFG----VRVEPAAFNEMFNEADATGNGKIQFPEFLSM 67
Query: 68 -WKYVTDW------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ + + FR+FD + +G I K+ L AL G RL L +
Sbjct: 68 MGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITET- 126
Query: 121 GRGTILFDDFIQ 132
+G I +D+FI
Sbjct: 127 EKGQIRYDNFIN 138
Score = 66.0 bits (162), Expect = 1e-14
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FD + +G I K L L FG R+ M + D G G I F +F ++
Sbjct: 11 AFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEF----LS 66
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
+ L AFR++D + G I
Sbjct: 67 MMGRRMKQTTSEDILRQAFRTFDPEGTGYIP 97
Score = 40.2 bits (95), Expect = 6e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
S + L F+ D + +G+I LQ AL N G P +G+ + +G I +
Sbjct: 77 SEDILRQAFRTFDPEGTGYIPKAALQDALLNLG--DRLKPHEFAEFLGITET-EKGQIRY 133
Query: 62 EDF 64
++F
Sbjct: 134 DNF 136
Score = 27.1 bits (61), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D+++ G IT
Sbjct: 11 AFELFDSERTGFITKE 26
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 74.7 bits (184), Expect = 2e-16
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGM-------------FDK 53
L IF+ +D + G + DEL + D
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM 392
Query: 54 HNRGSITFEDFGA----LWKYVTD--WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSD 107
GSI + +F A ++ + F+ FD+D SG I EL + +
Sbjct: 393 DGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQM 452
Query: 108 RMIGTMLKKFDRFGRGTILFDDFIQ 132
+ +++++ D G + F++F++
Sbjct: 453 EELESIIEQVDNNKDGEVDFNEFVE 477
Score = 57.0 bits (138), Expect = 3e-10
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTF--------------GYRLSDRMIGTMLKKFDRFGRG 123
FR D +N G +D+ EL F + I +++ D G G
Sbjct: 337 FRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSG 396
Query: 124 TILFDDFIQCCITLY------ALTSAFRSYDTDQDGVITI 157
+I + +FI I + AF+ +D D G I+
Sbjct: 397 SIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKIST 436
Score = 53.9 bits (130), Expect = 3e-09
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
SRE + F+ D+D SG IS EL S + E + +I D + G + F
Sbjct: 415 SRERMERAFKMFDKDGSGKISTKELFKLFSQAD-SSIQMEELESIIEQVDNNKDGEVDFN 473
Query: 63 DFGALWKYVTDWQ 75
+F + + +
Sbjct: 474 EFVEMLQNFVRNE 486
Score = 38.1 bits (89), Expect = 6e-04
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 9 NIFQGVDRDRSGFISADE-------LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
++ +D D SG I E LS MFDK G I+
Sbjct: 385 SLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERM--------ERAFKMFDKDGSGKIST 436
Query: 62 EDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAALTTF 101
++ L+ + ++ D + G +D +E L F
Sbjct: 437 KELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF 482
Score = 28.9 bits (65), Expect = 0.89
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 140 LTSAFRSYDTDQDGVITI 157
LT FR DT+ DG++
Sbjct: 333 LTEIFRKLDTNNDGMLDR 350
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 71.1 bits (175), Expect = 2e-16
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 19/133 (14%)
Query: 14 VDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGALWKY 70
R G + A ++ L G NP V G K + E+ +++
Sbjct: 20 FWDGRDGDVDAAKVGDLLRCLG----MNPTEAQVHQHGGT-KKMGEKAYKLEEILPIYEE 74
Query: 71 VT---------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF- 120
++ ++ F++FDR+ G I +E+ L G R+++ + D
Sbjct: 75 MSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIRE 134
Query: 121 -GRGTILFDDFIQ 132
G I ++D ++
Sbjct: 135 DIDGNIKYEDLMK 147
Score = 51.0 bits (123), Expect = 8e-09
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 20/101 (19%)
Query: 71 VTDWQNCFRSFD--RDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFD 128
+ + + F FD G++D +++ L G ++ + + G +
Sbjct: 8 IEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGT-KKMGEKAYKLE 66
Query: 129 DFIQCCITLYA-------------LTSAFRSYDTDQDGVIT 156
+ + +Y AF+++D + G+I+
Sbjct: 67 EIL----PIYEEMSSKDTGTAADEFMEAFKTFDREGQGLIS 103
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 71.9 bits (177), Expect = 3e-16
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
L NIF +D D SG +S+ E+ L + P+ + ++ D + G I + DF A
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPD-IHQVLRDIDSNASGQIHYTDFLA 117
Query: 67 ----LWKYVTD--WQNCFRSFDRDNSGNIDKSELSAAL--TTFGYRLSDRMIGTMLKKFD 118
Y+ F+ FD D +G I EL L D+ I ++L++ D
Sbjct: 118 ATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVD 177
Query: 119 RFGRGTILFDDFIQ 132
G G I F +F+
Sbjct: 178 LNGDGEIDFHEFML 191
Score = 70.7 bits (174), Expect = 7e-16
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F + D DNSG + E+ L GY+ I +L+ D G I + DF+ I
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDK 122
Query: 138 YALTS------AFRSYDTDQDGVITI 157
F+ +D D +G I++
Sbjct: 123 QTYLKKEVCLIPFKFFDIDGNGKISV 148
Score = 49.1 bits (118), Expect = 5e-08
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALS-NGTWTPFNPETVRLMIGMFDKHNRGSITF 61
+E F+ D D +G IS +EL+ + P + + ++ D + G I F
Sbjct: 127 KKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDF 186
Query: 62 EDF 64
+F
Sbjct: 187 HEF 189
Score = 28.3 bits (64), Expect = 0.97
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 140 LTSAFRSYDTDQDGVITIH 158
L + F + D D G ++
Sbjct: 59 LRNIFIALDVDNSGTLSSQ 77
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 70.6 bits (174), Expect = 3e-16
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 14 VDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGALWKY 70
R G + A +L G NP E V +G K S+ FE+F ++
Sbjct: 20 FWDGRDGAVDAFKLGDVCRCLG----INPRNEDVF-AVGGTHKMGEKSLPFEEFLPAYEG 74
Query: 71 VTDWQN--------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF-- 120
+ D + F++FDR+ G I +EL LT G RLSD + ++K D
Sbjct: 75 LMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQED 134
Query: 121 GRGTILFDDFIQ 132
G + ++DF++
Sbjct: 135 LEGNVKYEDFVK 146
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 77 CFRSFD--RDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134
F FD G +D +L G + + + + G ++ F++F+
Sbjct: 14 VFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSLPFEEFL--- 69
Query: 135 ITLYA------------LTSAFRSYDTDQDGVIT 156
Y AF+++D + G I+
Sbjct: 70 -PAYEGLMDCEQGTFADYMEAFKTFDREGQGFIS 102
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 70.3 bits (173), Expect = 4e-16
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 15 DRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMF--DKHNRGSITFEDFGALWK 69
DR G I + + + G NP V ++G D+ + FE F + +
Sbjct: 20 DRVGDGKILYSQCGDVMRALG----QNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQ 75
Query: 70 YVT---------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
V D+ FR FD++ +G + +EL LTT G ++++ + T+L
Sbjct: 76 AVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HED 134
Query: 121 GRGTILFDDFIQ 132
G I ++ F++
Sbjct: 135 SNGCINYEAFLK 146
Score = 58.8 bits (143), Expect = 1e-11
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLK--KFDRFGRGTILFDDFIQCC 134
F FDR G I S+ + G ++ + +L K D + F+ F
Sbjct: 15 AFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETF---- 70
Query: 135 ITLYA-------------LTSAFRSYDTDQDGVITI 157
+ + FR +D + +G +
Sbjct: 71 LPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMG 106
Score = 26.4 bits (59), Expect = 3.2
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D DG I
Sbjct: 15 AFELFDRVGDGKILYS 30
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 69.4 bits (171), Expect = 7e-16
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F +D++R GFI ++L L++ G NP E + M+ G I F F +
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMG----KNPTDEYLEGMM----SEAPGPINFTMFLTM 64
Query: 68 -WKYVTDW------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ + +N F FD + SG I + L LTT G R +D + M ++
Sbjct: 65 FGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPID 124
Query: 121 GRGTILFDDFIQ 132
+G + +F +
Sbjct: 125 KKGNFNYVEFTR 136
Score = 57.1 bits (139), Expect = 4e-11
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F D++ G IDK +L L + G +D + M+ + G I F F +T
Sbjct: 12 AFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMF----LT 63
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
++ + +AF +D + G I
Sbjct: 64 MFGEKLNGTDPEDVIRNAFACFDEEASGFIH 94
Score = 41.3 bits (98), Expect = 2e-05
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ + N F D + SGFI D L+ L+ G F E V M +G+ +
Sbjct: 74 PEDVIRNAFACFDEEASGFIHEDHLRELLTTMG--DRFTDEEVDEMYREAPIDKKGNFNY 131
Query: 62 EDF 64
+F
Sbjct: 132 VEF 134
Score = 26.7 bits (60), Expect = 3.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF D ++DG I
Sbjct: 12 AFNMIDQNRDGFIDKE 27
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 69.6 bits (171), Expect = 7e-16
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-G 65
L F+ +D D SG +S +E NP V+ +I +FD G + F++F
Sbjct: 8 LGKRFKKLDLDNSGSLSVEEFMSLPELQ----QNPL-VQRVIDIFDTDGNGEVDFKEFIE 62
Query: 66 ALWKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTF-GYRLSD----RMIGTML 114
+ ++ FR +D D G I EL L G L D +++ +
Sbjct: 63 GVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTI 122
Query: 115 KKFDRFGRGTILFDDFIQ 132
D+ G G I F++F
Sbjct: 123 INADKDGDGRISFEEFCA 140
Score = 54.5 bits (132), Expect = 3e-10
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F+ D DNSG++ E + L R+I FD G G + F +FI+
Sbjct: 12 FKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVI----DIFDTDGNGEVDFKEFIEGVSQF 67
Query: 138 YALTS-------AFRSYDTDQDGVIT 156
AFR YD D+DG I+
Sbjct: 68 SVKGDKEQKLRFAFRIYDMDKDGYIS 93
Score = 42.6 bits (101), Expect = 9e-06
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPE----TVRLMIGMFDKHNR 56
+ L F+ D D+ G+IS EL L V I DK
Sbjct: 71 GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGD 130
Query: 57 GSITFEDF 64
G I+FE+F
Sbjct: 131 GRISFEEF 138
Score = 26.4 bits (59), Expect = 3.8
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 139 ALTSAFRSYDTDQDGVITIHYEQFLDM 165
L F+ D D G ++ E+F+ +
Sbjct: 7 RLGKRFKKLDLDNSG--SLSVEEFMSL 31
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 69.1 bits (170), Expect = 1e-15
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
+ FQ D+D G +S +EL AL + G NP + + G +
Sbjct: 7 IQECFQIFDKDNDGKVSIEELGSALRSLG----KNPTNAELNTIKGQLNA---KEFDLAT 59
Query: 64 FGALWKYVT--------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLK 115
F +++ + + FR+ D++ +G I ++EL L G L+ + ++K
Sbjct: 60 FKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMK 119
Query: 116 KFDRFGRGTILFDDFIQ 132
+ G G I ++ F+
Sbjct: 120 EVSVSGDGAINYESFVD 136
Score = 53.3 bits (129), Expect = 8e-10
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
CF+ FD+DN G + EL +AL + G ++ + T+ + + F T
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNA---KEFDLATFK----T 62
Query: 137 LYA------------LTSAFRSYDTDQDGVIT 156
+Y + AFR+ D + +G I
Sbjct: 63 VYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQ 94
Score = 31.3 bits (72), Expect = 0.075
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 34/93 (36%)
Query: 15 DRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTD 73
D++ +G I EL+ L N G V ++
Sbjct: 86 DKEGNGTIQEAELRQLLLNLGD--ALTSSEVEELM------------------------- 118
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLS 106
+ G I+ L T GY L+
Sbjct: 119 -----KEVSVSGDGAINYESFVDMLVT-GYPLA 145
Score = 26.0 bits (58), Expect = 5.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 143 AFRSYDTDQDGVITIH 158
F+ +D D DG ++I
Sbjct: 10 CFQIFDKDNDGKVSIE 25
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 69.1 bits (170), Expect = 1e-15
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 15 DRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDK--HNRGSITFEDFGALWK 69
DR I+A ++ + G NP + ++G K N +ITFE+F + +
Sbjct: 18 DRTGDAKITASQVGDIARALG----QNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQ 73
Query: 70 YVT---------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
D+ R FD++ +G + +EL L T G ++++ + ++K +
Sbjct: 74 AAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQED- 132
Query: 121 GRGTILFDDFIQ 132
G I ++ F++
Sbjct: 133 SNGCINYEAFVK 144
Score = 55.2 bits (134), Expect = 2e-10
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLK--KFDRFGRGTILFDDFIQCC 134
F FDR I S++ G ++ I +L + I F++F+
Sbjct: 13 AFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPML 72
Query: 135 ITLYA---------LTSAFRSYDTDQDGVIT 156
R +D + +G +
Sbjct: 73 QAAANNKDQGTFEDFVEGLRVFDKEGNGTVM 103
Score = 26.3 bits (59), Expect = 3.8
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D IT
Sbjct: 13 AFLLFDRTGDAKITAS 28
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 69.2 bits (170), Expect = 2e-15
Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTP--------FNP--ETVRLMIGMFDKHNR 56
L IF+ +D + G + EL + V ++ D
Sbjct: 42 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN 101
Query: 57 GSITFEDFGALWKYVTDWQN------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMI 110
G I + +F + + F+ FD D SG I EL + D
Sbjct: 102 GYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE--VDDETW 159
Query: 111 GTMLKKFDRFGRGTILFDDFIQ 132
+L++ D+ G + F++F++
Sbjct: 160 HQVLQECDKNNDGEVDFEEFVE 181
Score = 60.8 bits (148), Expect = 3e-12
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 78 FRSFDRDNSGNIDKSELSAALT-----------TFGYRLSDRMIGTMLKKFDRFGRGTIL 126
FR D + G +D+ EL + + +L+ D G I
Sbjct: 46 FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIE 105
Query: 127 FDDFIQCCITLYALTS------AFRSYDTDQDGVITI 157
+ +F+ C+ L S AF+ +D+D G IT
Sbjct: 106 YSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITN 142
Score = 53.4 bits (129), Expect = 2e-09
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
SRE L FQ D D SG I+ +EL T + ET ++ DK+N G + FE
Sbjct: 121 SRERLLAAFQQFDSDGSGKITNEELGRLFGV---TEVDDETWHQVLQECDKNNDGEVDFE 177
Query: 63 DFGALWKYVTDWQ 75
+F + + + D +
Sbjct: 178 EFVEMMQKICDVK 190
Score = 27.3 bits (61), Expect = 2.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 140 LTSAFRSYDTDQDGVITIH 158
LT FR D + DG +
Sbjct: 42 LTQIFRQLDNNGDGQLDRK 60
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 67.6 bits (166), Expect = 3e-15
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
+F+ +D + G +S +E++ +S N + ++L+ D G I +F +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIK-NEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 70 YVTDWQNC---------FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ ++ D D G + K E+++ G + K D
Sbjct: 64 SIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQV----MKADAN 119
Query: 121 GRGTILFDDFIQ 132
G G I ++F++
Sbjct: 120 GDGYITLEEFLE 131
Score = 66.4 bits (163), Expect = 8e-15
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F+ D + G + E+ A ++ +++++ + K D G G I ++F + ++
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Query: 138 YA---------LTSAFRSYDTDQDGVIT 156
L ++ D D DG +T
Sbjct: 66 QGQDLSDDKIGLKVLYKLMDVDGDGKLT 93
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
+ L +++ +D D G ++ +E+ E V + D + G IT E
Sbjct: 73 DKIGLKVLYKLMDVDGDGKLTKEEVTSFFKK-----HGIEKVAEQVMKADANGDGYITLE 127
Query: 63 DF 64
+F
Sbjct: 128 EF 129
Score = 25.6 bits (57), Expect = 5.4
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 143 AFRSYDTDQDGVITI 157
F+ D + DG ++
Sbjct: 5 LFKEIDVNGDGAVSY 19
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 70.1 bits (171), Expect = 3e-15
Identities = 31/204 (15%), Positives = 55/204 (26%), Gaps = 52/204 (25%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL------SNGTWTPFNP---ETVRLMIGMFDKHNRG 57
I+Q D D +G+I EL + + + + +D G
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDG 72
Query: 58 SITFEDFGALWKYVT-----------------DWQNCFRSFDRDNSGNIDKSELSAALTT 100
+ E+ + ++ +R +D D+SG I +EL L
Sbjct: 73 RLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD 132
Query: 101 FG--------YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA------------- 139
D M+K FD+ G + +D +
Sbjct: 133 LFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQV 192
Query: 140 -----LTSAFRSYDTDQDGVITIH 158
F YD + G +
Sbjct: 193 ERKRDFEKIFAHYDVSRTGALEGP 216
Score = 69.3 bits (169), Expect = 7e-15
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 33/164 (20%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNP-------ETVRLMIGMFDKHN 55
+ I++ D D SG+ISA EL++ L + E M+ +FDK+
Sbjct: 102 NSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNK 161
Query: 56 RGSITFEDFGALWKYVT------------------DWQNCFRSFDRDNSGNIDKSELSAA 97
G + D + D++ F +D +G ++ E+
Sbjct: 162 DGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGF 221
Query: 98 LTTFGYRLS--------DRMIGTMLKKFDRFGRGTILFDDFIQC 133
+ + D+ +L D G I + C
Sbjct: 222 VKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 38.5 bits (89), Expect = 4e-04
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 23/99 (23%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ + IF D R+G + E+ + + + R SI+
Sbjct: 192 VERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD-----------------MMELVRPSIS 234
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALT 99
D + + D + G I KSEL+ L
Sbjct: 235 GGDLDKFRECL------LTHCDMNKDGKIQKSELALCLG 267
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 67.8 bits (166), Expect = 4e-15
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 29/153 (18%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVRL----------MIGMFD 52
+ F D+D +G I + A + L + G+ D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIAD 65
Query: 53 KHNRGSITFEDFGALW-KYVTDWQN------------CFRSFDRDNSGNIDKSELSAALT 99
+ IT E+F K + D + D D G + ++ + ALT
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 100 TFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
FG + + + D G G + + +
Sbjct: 126 AFG--VPEDLARQAAAALDTDGDGKVGETEIVP 156
Score = 51.3 bits (123), Expect = 6e-09
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFE 62
R FL D D G ++ + AL+ G + R D G +
Sbjct: 97 RPFLHAALGVADTDGDGAVTVADTARALTAFG----VPEDLARQAAAALDTDGDGKVGET 152
Query: 63 DFGALWK 69
+ +
Sbjct: 153 EIVPAFA 159
Score = 50.5 bits (121), Expect = 1e-08
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 28/107 (26%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFG---------------YRLSDRMIGTMLKKFDRFGR 122
F +FD+D +G+ID+S+ S A Y ++ + + DR G
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 123 GTILFDDFIQCCITLYA-------------LTSAFRSYDTDQDGVIT 156
I ++F+ + L +A DTD DG +T
Sbjct: 70 QRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVT 116
Score = 44.3 bits (105), Expect = 2e-06
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSN------GTWTPFNPETVRLMIGMFDKHN 55
+ + DRD I+ +E + + +G+ D
Sbjct: 52 GAEALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDG 111
Query: 56 RGSITFEDFGALWKYV----TDWQNCFRSFDRDNSGNIDKSELSAALTTF 101
G++T D + + D D G + ++E+ A +
Sbjct: 112 DGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 26.6 bits (59), Expect = 3.2
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 140 LTSAFRSYDTDQDGVIT 156
+ + F ++D D +G I
Sbjct: 6 IAARFTTFDQDGNGHID 22
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 70.5 bits (173), Expect = 5e-15
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 17/140 (12%)
Query: 7 LWNIFQGVDRDRSGFISADELQHAL--------SNGTWTPFNPETVRLMIGMFDKHNRGS 58
L +IF+ +D++ G + EL + E ++ G D G
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAIL-GAADFDRNGY 406
Query: 59 ITFEDFGA----LWKYVTD--WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGT 112
I + +F ++ ++ F+ FD+D +G I EL++ L +
Sbjct: 407 IDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDH--LESKTWKE 464
Query: 113 MLKKFDRFGRGTILFDDFIQ 132
M+ D G + F++F +
Sbjct: 465 MISGIDSNNDGDVDFEEFCK 484
Score = 58.6 bits (142), Expect = 8e-11
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 75 QNCFRSFDRDNSGNIDKSELSAALTTFG--------YRLSDRMIGTMLKKFDRFGRGTIL 126
+ FR D++ G +D+ EL + + + +L D G I
Sbjct: 349 TDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYID 408
Query: 127 FDDFIQCCITLY------ALTSAFRSYDTDQDGVITIH 158
+ +F+ + L SAF+ +D D +G I++
Sbjct: 409 YSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVD 446
Score = 54.3 bits (131), Expect = 2e-09
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
S++ L + FQ D+D +G IS DEL +T + MI D +N G + FE
Sbjct: 424 SKDKLESAFQKFDQDGNGKISVDELASVFGLD---HLESKTWKEMISGIDSNNDGDVDFE 480
Query: 63 DFGAL 67
+F +
Sbjct: 481 EFCKM 485
Score = 40.1 bits (94), Expect = 2e-04
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 9 NIFQGVDRDRSGFISADE-------LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
I D DR+G+I E + LS FD+ G I+
Sbjct: 394 AILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKL--------ESAFQKFDQDGNGKISV 445
Query: 62 ED----FGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAAL 98
++ FG W+ D +N G++D E +
Sbjct: 446 DELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 28.1 bits (63), Expect = 1.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 140 LTSAFRSYDTDQDGVITI 157
LT FR D + DG +
Sbjct: 348 LTDIFRHIDKNGDGQLDR 365
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 70.1 bits (172), Expect = 7e-15
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPET----------VRLMIGMFDKHNR 56
L IF +D++ G + EL + V ++ D
Sbjct: 337 LTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKN 396
Query: 57 GSITFEDFGA----LWKYVTD--WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMI 110
G I + +F ++ + FR FD DNSG I +EL+ +
Sbjct: 397 GYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSD--VDSETW 454
Query: 111 GTMLKKFDRFGRGTILFDDFIQ 132
++L + D+ G + FD+F Q
Sbjct: 455 KSVLSEVDKNNDGEVDFDEFQQ 476
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTF-----------GYRLSDRMIGTMLKKFDRFGRGTIL 126
F D++ G +D++EL + + +L D G I
Sbjct: 341 FHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE 400
Query: 127 FDDFIQCCITLY------ALTSAFRSYDTDQDGVITIH 158
+ +F+ + L AFR +D+D G I+
Sbjct: 401 YSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISST 438
Score = 55.9 bits (135), Expect = 6e-10
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
SRE L F+ D D SG IS+ EL + ET + ++ DK+N G + F+
Sbjct: 416 SRERLERAFRMFDSDNSGKISSTELATIFGVS---DVDSETWKSVLSEVDKNNDGEVDFD 472
Query: 63 DFGALWKYVTD 73
+F + +
Sbjct: 473 EFQQMLLKLCG 483
Score = 38.1 bits (89), Expect = 7e-04
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 9 NIFQGVDRDRSGFISADE-------LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ VD D++G+I E + LS MFD N G I+
Sbjct: 386 QVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERL--------ERAFRMFDSDNSGKISS 437
Query: 62 EDFGALWKY----VTDWQNCFRSFDRDNSGNIDKSELSAAL 98
+ ++ W++ D++N G +D E L
Sbjct: 438 TELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
Score = 28.1 bits (63), Expect = 1.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 140 LTSAFRSYDTDQDGVITI 157
LT+ F D + DG +
Sbjct: 337 LTAIFHKMDKNGDGQLDR 354
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 67.3 bits (165), Expect = 9e-15
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
+ +F +D + +G +S E+ L++ + ++ D ++RG+IT+ +F A
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLAS---VGIKKWDINRILQALDINDRGNITYTEFMA 97
Query: 67 L---WKYVTD--WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFG 121
WK + + F D+D G I KS++ + + L + I
Sbjct: 98 GCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIK 155
Query: 122 RGTILFDDFIQ 132
+G +
Sbjct: 156 KGIPREHIINK 166
Score = 60.8 bits (148), Expect = 2e-12
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F D +++G++ E+ L + G + I +L+ D RG I + +F+ C
Sbjct: 45 FYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTEFMAGCYRW 102
Query: 138 YALT-----SAFRSYDTDQDGVITI 157
+ +AF D D+DG I+
Sbjct: 103 KNIESTFLKAAFNKIDKDEDGYISK 127
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMI--------GMFDKH 54
FL F +D+D G+IS ++ + + + + G+ +H
Sbjct: 106 ESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV---LDNNDIDNFFLSVHSIKKGIPREH 162
Query: 55 NRGSITFEDF 64
I+F++F
Sbjct: 163 IINKISFQEF 172
Score = 26.9 bits (60), Expect = 2.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 140 LTSAFRSYDTDQDGVITI 157
+ F DT+ +G ++
Sbjct: 41 INELFYKLDTNHNGSLSH 58
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 66.5 bits (163), Expect = 1e-14
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 15 DRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGALWKYV 71
++ G IS D + G P + + ++ ++T+E +
Sbjct: 25 EKSSGGKISIDNASYNARKLG----LAPSSIDEKKIKELYG----DNLTYEQYLEYLSIC 76
Query: 72 TDWQN-------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
++ F FD + +G + KS++ LTT+G L+D+ L F
Sbjct: 77 VHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFS--SEDN 134
Query: 125 ILFDDFIQ 132
I + F +
Sbjct: 135 IDYKLFCE 142
Score = 53.0 bits (128), Expect = 1e-09
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
V + ++ + G I S G S + + + + ++ +
Sbjct: 14 VDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTYEQY 69
Query: 131 IQCCITLYA-------LTSAFRSYDTDQDGVIT 156
++ L F +D + G +T
Sbjct: 70 LEYLSICVHDKDNVEELIKMFAHFDNNCTGYLT 102
Score = 37.2 bits (87), Expect = 6e-04
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
F D + +G+++ ++++ L+ + + F +I ++ F
Sbjct: 90 FAHFDNNCTGYLTKSQMKNILTTWGD-ALTDQEAIDALNAFSSE--DNIDYKLF 140
Score = 26.4 bits (59), Expect = 4.1
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 143 AFRSYDTDQDGVITIH 158
+ G I+I
Sbjct: 20 RIYFNEKSSGGKISID 35
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 66.0 bits (162), Expect = 1e-14
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
F DR +G I + L + G NP I + + E F +
Sbjct: 11 FSLFDRHGTGRIPKTSIGDLLRACG----QNPT--LAEITEIESTLPAEVDMEQFLQVLN 64
Query: 70 YVT---------DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
++ F+ FD+D +G I EL LT+ G +LS+ + +LK
Sbjct: 65 RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV- 123
Query: 121 GRGTILFDDFIQ 132
G + + DF+Q
Sbjct: 124 KDGMVNYHDFVQ 135
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 21/93 (22%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F FDR +G I K+ + L G + I + + + + F +
Sbjct: 10 AFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI----TEIESTLPAEVDMEQF----LQ 61
Query: 137 LYA-------------LTSAFRSYDTDQDGVIT 156
+ F+ +D D G+I
Sbjct: 62 VLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIG 94
Score = 25.9 bits (58), Expect = 5.1
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D G I
Sbjct: 10 AFSLFDRHGTGRIPKT 25
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 66.0 bits (162), Expect = 2e-14
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F +D DR GF+S ++++ G P + + M+ K G + F F ++
Sbjct: 24 FSMIDVDRDGFVSKEDIKAISEQLG----RAPDDKELTAML----KEAPGPLNFTMFLSI 75
Query: 68 --WKYV-TDWQ----NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
K TD + N F FD + ++ + L G + + K+
Sbjct: 76 FSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE 135
Query: 121 GRGTILFDDFIQ 132
G G + F
Sbjct: 136 G-GKFDYVKFTA 146
Score = 57.5 bits (140), Expect = 3e-11
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F D D G + K ++ A G D+ + MLK+ G + F F ++
Sbjct: 23 AFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPLNFTMF----LS 74
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
+++ + +AF +D + +
Sbjct: 75 IFSDKLSGTDSEETIRNAFAMFDEQETKKLN 105
Score = 37.9 bits (89), Expect = 4e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
S E + N F D + ++ + ++ L N G FN + +R+ G +
Sbjct: 85 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMG--DNFNKDEMRMTFKEAPV-EGGKFDY 141
Query: 62 EDF 64
F
Sbjct: 142 VKF 144
Score = 26.7 bits (60), Expect = 3.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF D D+DG ++
Sbjct: 23 AFSMIDVDRDGFVSKE 38
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 67.2 bits (164), Expect = 2e-14
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 27/151 (17%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMF-------DKHNRGS 58
L+ F D D G + DE+ + E V M
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 59 ITFEDFGALWKYVTD-----------------WQNCFRSFDRDNSGNIDKSELSAALTTF 101
+ ED+ + + + + D D G +D EL + F
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
Query: 102 GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
+ T +K D G + + +
Sbjct: 158 D--VPQEAAYTFFEKADTDKSGKLERTELVH 186
Score = 52.5 bits (126), Expect = 5e-09
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 35/140 (25%)
Query: 52 DKHNRGSITFEDFGALWKY---------VTDWQNCFRSFDRDNSGNIDKSELSAALTTFG 102
+++N G W++ ++ F +FD D+ G ++ E+
Sbjct: 7 EQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMR 66
Query: 103 YRLSDR---------MIGTMLKKFDRFGRGTILFDDFIQCCITLY--------------- 138
++ + +L +D+++
Sbjct: 67 QLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLI 126
Query: 139 --ALTSAFRSYDTDQDGVIT 156
S + D D DG +
Sbjct: 127 ALLSNSYYDVLDDDGDGTVD 146
Score = 48.3 bits (115), Expect = 1e-07
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ + +D D G + DEL+ + E D G +
Sbjct: 125 LIALLSNSYYDVLDDDGDGTVDVDELKTMMKA---FDVPQEAAYTFFEKADTDKSGKLER 181
Query: 62 EDFGALWK 69
+ L++
Sbjct: 182 TELVHLFR 189
Score = 26.7 bits (59), Expect = 3.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPET 43
F+ D D+SG + EL H P++P+
Sbjct: 167 FFEKADTDKSGKLERTELVHLFRKFWMEPYDPQW 200
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 68.6 bits (168), Expect = 3e-14
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPET-------VRLMIGMFDKHNRGSI 59
L +IF+ +D++ G + EL + V ++ D G I
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
Query: 60 TFEDF--GALWKYVTDWQN----CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTM 113
+ +F + K + + F FD D SG I K EL+ +S++ +
Sbjct: 417 EYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTS--ISEKTWNDV 474
Query: 114 LKKFDRFGRGTILFDDFIQ 132
L + D+ I FD+F+
Sbjct: 475 LGEADQNKDNMIDFDEFVS 493
Score = 58.9 bits (143), Expect = 6e-11
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
S E L F D D+SG I+ +EL + + +T ++G D++ I F+
Sbjct: 433 SEERLRRAFNLFDTDKSGKITKEELANLFGLT---SISEKTWNDVLGEADQNKDNMIDFD 489
Query: 63 DFGALWKYVTDWQN 76
+F ++ + D +
Sbjct: 490 EFVSMMHKICDHKT 503
Score = 58.6 bits (142), Expect = 8e-11
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFG--------YRLSDRMIGTMLKKFDRFGRGTILFDD 129
F+ D++ G +DK EL + + + +LK+ D G I + +
Sbjct: 361 FKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSE 420
Query: 130 FIQCCITLY------ALTSAFRSYDTDQDGVITIH 158
FI C+ L AF +DTD+ G IT
Sbjct: 421 FISVCMDKQILFSEERLRRAFNLFDTDKSGKITKE 455
Score = 37.4 bits (87), Expect = 0.001
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 9 NIFQGVDRDRSG------FISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
NI + VD D++G FIS + L F+ E +R +FD G IT E
Sbjct: 403 NILKEVDFDKNGYIEYSEFISVCMDKQIL-------FSEERLRRAFNLFDTDKSGKITKE 455
Query: 63 DFGALWKYV----TDWQNCFRSFDRDNSGNIDKSELSAAL 98
+ L+ W + D++ ID E + +
Sbjct: 456 ELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Score = 29.7 bits (67), Expect = 0.42
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 96 AALTTFGYRLSDR----MIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA-------- 143
AA+ G +L+ + + KK D+ G G + + I+ L +
Sbjct: 339 AAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVE 398
Query: 144 ------FRSYDTDQDGVITIHYEQFL 163
+ D D++G I Y +F+
Sbjct: 399 EEVDNILKEVDFDKNG--YIEYSEFI 422
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 66.0 bits (161), Expect = 3e-14
Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 26/152 (17%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGT-----WTPFNPETVRLMIGMFDKHN----RG 57
++F +D + +G IS DE+ + S+ TP + + + F
Sbjct: 18 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGV 77
Query: 58 SITFEDFGALWK-----------------YVTDWQNCFRSFDRDNSGNIDKSELSAALTT 100
+ + WK F D+D +G I E A
Sbjct: 78 ETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA 137
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
G S + D G + D+ +
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Score = 48.6 bits (116), Expect = 9e-08
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
R + +F VD+D++G I+ DE + + E + D G +
Sbjct: 105 TLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA-AGIIQSSEDCEETFRVCDIDESGQLD 163
Query: 61 FEDFGALWK 69
++
Sbjct: 164 VDEMTRQHL 172
Score = 45.6 bits (108), Expect = 9e-07
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 27/106 (25%)
Query: 78 FRSFDRDNSGNIDKSELSA-----ALTTFGYRLSDRMIGTMLKKFDRFGRGT-----ILF 127
F D +++G I E+ + G + G G +
Sbjct: 22 FNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDW 81
Query: 128 DDFI-----------------QCCITLYALTSAFRSYDTDQDGVIT 156
+I + + + F D DQ+G IT
Sbjct: 82 PAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAIT 127
Score = 26.7 bits (59), Expect = 3.7
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
F D + +G I++
Sbjct: 21 MFNFLDVNHNGKISLD 36
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 65.9 bits (161), Expect = 5e-14
Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 33/154 (21%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-- 64
L + F+ +DR++ G++S +LQ + NP R +I F + F F
Sbjct: 31 LHHRFRALDRNKKGYLSRMDLQQIGALA----VNPLGDR-IIESFFPDGSQRVDFPGFVR 85
Query: 65 -------------GALWKYVTDWQN--------CFRSFDRDNSGNIDKSELSAALTT-FG 102
+ N F+ +D D G I + E+ L G
Sbjct: 86 VLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVG 145
Query: 103 YRLSD----RMIGTMLKKFDRFGRGTILFDDFIQ 132
++++ + +++ D G G + F +F +
Sbjct: 146 VQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Score = 50.9 bits (122), Expect = 1e-08
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
+ + FR+ DR+ G + + +L L DR+I + F G + F F
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRII----ESFFPDGSQRVDFPGF 83
Query: 131 IQCCITLYALTS-----------------------AFRSYDTDQDGVIT 156
++ + AF+ YD D+DG I+
Sbjct: 84 VRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKIS 132
Score = 42.8 bits (101), Expect = 1e-05
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRL----MIGMFDKHNRGSIT 60
L FQ D DR G IS E+ L E + + D+ G+++
Sbjct: 114 NKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVS 173
Query: 61 FEDF 64
F +F
Sbjct: 174 FVEF 177
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 65.5 bits (160), Expect = 6e-14
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 26/152 (17%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGT-----WTPFNPETVRLMIGMF----DKHNRG 57
++F +D + +G I+ DE+ S+ TP + ++ + F
Sbjct: 22 HKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGK 81
Query: 58 SITFEDFGALWKYVT-----------------DWQNCFRSFDRDNSGNIDKSELSAALTT 100
I F F WK + F FD+D SG I E A
Sbjct: 82 EIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKI 141
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
G S + D G + D+ +
Sbjct: 142 SGISPSQEDCEATFRHCDLDNAGDLDVDEMTR 173
Score = 50.5 bits (121), Expect = 2e-08
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 27/106 (25%)
Query: 78 FRSFDRDNSGNIDKSELSA-----ALTTFGYRLSDRMIGTMLKKFDRFGRGT-----ILF 127
F D + +G I E+ + + + G G I F
Sbjct: 26 FDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 128 DDFIQCCITLYA-----------------LTSAFRSYDTDQDGVIT 156
F+ L + F +D D G IT
Sbjct: 86 PQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTIT 131
Score = 47.4 bits (113), Expect = 2e-07
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSIT 60
RE+ +F D+D SG I+ DE + G + E D N G +
Sbjct: 110 LIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG--ISPSQEDCEATFRHCDLDNAGDLD 167
Query: 61 FEDF 64
++
Sbjct: 168 VDEM 171
Score = 27.0 bits (60), Expect = 2.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 140 LTSAFRSYDTDQDGVITI 157
F D + +G IT+
Sbjct: 22 HKHMFDFLDINGNGKITL 39
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 64.5 bits (158), Expect = 6e-14
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
F +D+DR GFI ++L+ S G P + + M+ G + F F L
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLG----RVPPDDELNAMLKECP----GQLNFTAFLTL 73
Query: 68 -WKYVTDW------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ V+ +N F FD D G I + L L G S I + K
Sbjct: 74 FGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPL- 132
Query: 121 GRGTILFDDFIQ 132
++ +
Sbjct: 133 KNKQFNYNKMVD 144
Score = 57.9 bits (141), Expect = 2e-11
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F D+D G I +L ++ G D + MLK+ G + F F +T
Sbjct: 21 AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAF----LT 72
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
L+ L +AF +D D G I
Sbjct: 73 LFGEKVSGTDPEDALRNAFSMFDEDGQGFIP 103
Score = 37.5 bits (88), Expect = 5e-04
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ L N F D D GFI D L+ L N G F+ E ++ + +
Sbjct: 83 PEDALRNAFSMFDEDGQGFIPEDYLKDLLENMG--DNFSKEEIKNVWKDAPL-KNKQFNY 139
Query: 62 EDF 64
Sbjct: 140 NKM 142
Score = 26.7 bits (60), Expect = 2.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF D D+DG I +
Sbjct: 21 AFTMIDQDRDGFIGME 36
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 64.8 bits (158), Expect = 8e-14
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 30/151 (19%)
Query: 10 IFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVRL----------MIGMFDKHN 55
F D D +G + + + + E L + +
Sbjct: 12 RFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGS 71
Query: 56 RGSITFEDFGALWKYVTDWQN--------------CFRSFDRDNSGNIDKSELSAALTTF 101
GS+T E F + + + Q D++ G I+ E +A LT
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL 131
Query: 102 GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
G +S + D G G + D+ +
Sbjct: 132 G--MSKAEAAEAFNQVDTNGNGELSLDELLT 160
Score = 50.1 bits (120), Expect = 2e-08
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+ I D++ G I+ADE L+ + D + G ++ ++
Sbjct: 101 GPVVKGIVGMCDKNADGQINADEFAAWLTA---LGMSKAEAAEAFNQVDTNGNGELSLDE 157
Query: 64 FGALWK 69
+
Sbjct: 158 LLTAVR 163
Score = 47.4 bits (113), Expect = 2e-07
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 9 NIFQGVDRDRSGFISADELQHALSN-------GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ + G ++ ++ N ++ V+ ++GM DK+ G I
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 62 EDFGALWKYV----TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSD 107
++F A + + F D + +G + EL A+ F + D
Sbjct: 122 DEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLD 171
Score = 47.4 bits (113), Expect = 2e-07
Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 29/108 (26%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFG---------------YRLSDRMIGTMLKKFDRFGR 122
F +D D +G +++++ + + K+
Sbjct: 13 FDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSD 72
Query: 123 GTILFDDFIQCCITLY--------------ALTSAFRSYDTDQDGVIT 156
G++ + FI+ L + D + DG I
Sbjct: 73 GSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQIN 120
Score = 26.6 bits (59), Expect = 3.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 140 LTSAFRSYDTDQDGVIT 156
L F +D D +G +
Sbjct: 9 LKKRFDRWDFDGNGALE 25
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 64.6 bits (158), Expect = 1e-13
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFEDFGAL 67
FQ +D+D+ GFIS ++++ + G + + M+ G I F F +
Sbjct: 63 FQLIDQDKDGFISKNDIRATFDSLG----RLCTEQELDSMV----AEAPGPINFTMFLTI 114
Query: 68 -WKYVTDW------QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRF 120
+ N F FD + G + L +LTT+G + S + L +
Sbjct: 115 FGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPID 173
Query: 121 GRGTILFDDFIQ 132
G G I F Q
Sbjct: 174 GNGLIDIKKFAQ 185
Score = 53.5 bits (129), Expect = 2e-09
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCIT 136
F+ D+D G I K+++ A + G +++ + +M+ + G I F F +T
Sbjct: 62 AFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINFTMF----LT 113
Query: 137 LYA-----------LTSAFRSYDTDQDGVIT 156
++ + +AF +D + DG
Sbjct: 114 IFGDRIAGTDEEDVIVNAFNLFD-EGDGKCK 143
Score = 26.9 bits (60), Expect = 3.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 143 AFRSYDTDQDGVITIH 158
AF+ D D+DG I+ +
Sbjct: 62 AFQLIDQDKDGFISKN 77
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 64.0 bits (156), Expect = 2e-13
Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 23/144 (15%)
Query: 10 IFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKH---------NRGSI 59
F +D D+ G I+ + + + E ++++ I
Sbjct: 11 YFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGI 70
Query: 60 TFEDFGALWKYVTDWQN-----------CFRSFDRDNSGNIDKSELSAALTTFGYRLSDR 108
F K + FR+ D + NI + E G L
Sbjct: 71 DETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKT 128
Query: 109 MIGTMLKKFDRFGRGTILFDDFIQ 132
M D G + ++F+
Sbjct: 129 MAPASFDAIDTNNDGLLSLEEFVI 152
Score = 51.6 bits (124), Expect = 5e-09
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
L F+ VD + IS DE + D +N G ++ E+
Sbjct: 93 EGPLPLFFRAVDTNEDNNISRDEYGIFFGM---LGLDKTMAPASFDAIDTNNDGLLSLEE 149
Query: 64 FGALWK 69
F
Sbjct: 150 FVIAGS 155
Score = 46.6 bits (111), Expect = 4e-07
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLS------DRMIGTMLKKFDRF-----GR 122
+ F D D G I + + + F ++ ++ +D F G
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 123 GTILFDDFIQCCITLY-----------ALTSAFRSYDTDQDGVIT 156
I FI + L FR+ DT++D I+
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNIS 112
Score = 27.0 bits (60), Expect = 2.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 140 LTSAFRSYDTDQDGVITIH 158
+ + F D D+DG IT
Sbjct: 8 MKTYFNRIDFDKDGAITRM 26
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 63.3 bits (154), Expect = 3e-13
Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 31/147 (21%)
Query: 15 DRDRSGFISADELQHALSN----GTWTPFNPETVRL----------MIGMFDKHNRGSIT 60
D + G I D+ + A+ +W + + D++ +T
Sbjct: 23 DCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVT 82
Query: 61 FEDFGALWKYVTD---------------WQNCFRSFDRDNSGNIDKSELSAALTTFGYRL 105
E++ +W F D IDK E S ++G +
Sbjct: 83 KEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYG--I 140
Query: 106 SDRMIGTMLKKFDRFGRGTILFDDFIQ 132
G+ + + F +
Sbjct: 141 PKSDCDAAFDTLSDGGKTMVTREIFAR 167
Score = 50.2 bits (120), Expect = 3e-08
Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 9/85 (10%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+++ +F D I E + + +T E
Sbjct: 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMS---YGIPKSDCDAAFDTLSDGGKTMVTREI 164
Query: 64 FGALWKYVTDWQNCFRSFDRDNSGN 88
F LW F S DR GN
Sbjct: 165 FARLWT------EYFVSNDRGAKGN 183
Score = 48.7 bits (116), Expect = 9e-08
Identities = 19/151 (12%), Positives = 40/151 (26%), Gaps = 36/151 (23%)
Query: 50 MFDKHNRGSITFEDFGALWKYVTD---------------------WQNCFRSFDRDNSGN 88
+D ++ G I ++DF K + + W + D +
Sbjct: 21 FYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQ 80
Query: 89 IDKSELSAALTTFG---------YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL-- 137
+ K E + + M D G I ++ ++
Sbjct: 81 VTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI 140
Query: 138 --YALTSAFRSYDTDQDGVITIHYEQFLDMV 166
+AF + ++T E F +
Sbjct: 141 PKSDCDAAFDTLSDGGKTMVT--REIFARLW 169
Score = 40.6 bits (95), Expect = 5e-05
Identities = 12/114 (10%), Positives = 29/114 (25%), Gaps = 31/114 (27%)
Query: 74 WQNCFRS-FDRDNSGNIDKSELSAALTTFG---------------YRLSDRMIGTMLKKF 117
F + +D ++ G I+ + A+ + + K
Sbjct: 14 ILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYA 73
Query: 118 DRFGRGTILFDDFIQCCITL---------------YALTSAFRSYDTDQDGVIT 156
D + +++++ + F DT D +I
Sbjct: 74 DENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIID 127
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 58.3 bits (142), Expect = 3e-12
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F FD + +G+ID EL A+ G+ + I ++ ++DR G G I FDDF+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 11 FQGVDRDRSGFISADELQHAL-SNGTWTPFNP--ETVRLMIGMFDKHNRGSITFEDF 64
F D +++G I EL+ A+ + G F+ + ++ +D+ G I F+DF
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALG----FDVKKPEILELMNEYDREGNGYIGFDDF 65
Score = 26.7 bits (60), Expect = 1.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +DT++ G I H
Sbjct: 12 AFDLFDTNKTGSIDYH 27
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 60.3 bits (146), Expect = 4e-12
Identities = 17/147 (11%), Positives = 44/147 (29%), Gaps = 31/147 (21%)
Query: 15 DRDRSGFISADELQHALSNGT----WTPFNPETVRL----------MIGMFDKHNRGSIT 60
D + G I ++ + ++ + + + + + G D + ++
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVS 78
Query: 61 FEDFGALWKYVTDWQN---------------CFRSFDRDNSGNIDKSELSAALTTFGYRL 105
+E++ A+W+ F+ D G +D E F L
Sbjct: 79 WEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--L 136
Query: 106 SDRMIGTMLKKFDRFGRGTILFDDFIQ 132
+ + G+ T + + +
Sbjct: 137 QCADVPAVYNVITDGGKVTFDLNRYKE 163
Score = 49.1 bits (117), Expect = 5e-08
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+ + +F+G+D G + +E Q+ N V + + + +
Sbjct: 104 QNRIPFLFKGMDVSGDGIVDLEEFQNYCKN---FQLQCADVPAVYNVITDGGKVTFDLNR 160
Query: 64 FGALWK 69
+ L+
Sbjct: 161 YKELYY 166
Score = 44.9 bits (106), Expect = 2e-06
Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 36/151 (23%)
Query: 50 MFDKHNRGSITFEDFGALWKYVTD---------------------WQNCFRSFDRDNSGN 88
D ++ GSI DF + + W++ D +
Sbjct: 17 FLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDV 76
Query: 89 IDKSELSAALTTFGY---------RLSDRMIGTMLKKFDRFGRGTILFDDFIQCC----I 135
+ E A I + K D G G + ++F C +
Sbjct: 77 VSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL 136
Query: 136 TLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
+ + + ++ ++
Sbjct: 137 QCADVPAVYNVITDGGKVTFD--LNRYKELY 165
Score = 43.4 bits (102), Expect = 7e-06
Identities = 11/110 (10%), Positives = 25/110 (22%), Gaps = 12/110 (10%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPE--------TVRLMIGMFDKHN 55
+ ++ D ++ +S +E T + + + D
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 56 RGSITFEDFGALWKYV----TDWQNCFRSFDRDNSGNIDKSELSAALTTF 101
G + E+F K D + D +
Sbjct: 119 DGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
Score = 37.6 bits (87), Expect = 6e-04
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 31/115 (26%)
Query: 74 WQNCFRSF-DRDNSGNIDKSELSAALTTFG---------------YRLSDRMIGTMLKKF 117
+ F F D ++ G+I ++ +T + + + +
Sbjct: 10 IKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRA 69
Query: 118 DRFGRGTILFDDFIQCCITLYA---------------LTSAFRSYDTDQDGVITI 157
D + +++++ A + F+ D DG++ +
Sbjct: 70 DINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDL 124
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 59.5 bits (144), Expect = 5e-12
Identities = 16/91 (17%), Positives = 33/91 (36%)
Query: 42 ETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF 101
+ ++ + D L + +T ++ + FD +N G ID L +
Sbjct: 20 ARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL 79
Query: 102 GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
G + + M+ + TI + DF+
Sbjct: 80 GVPKTHLEMKKMISEVTGGVSDTISYRDFVN 110
Score = 48.3 bits (115), Expect = 7e-08
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
+ D + G I L+ + G ++ MI +I++ D
Sbjct: 52 FKEKYMEFDLNNEGEIDLMSLKRMMEKLG----VPKTHLEMKKMISEVTGGVSDTISYRD 107
Query: 64 FGAL-WKYVTDWQNCFRSFDRDNSGNIDK 91
F + + F+ + + K
Sbjct: 108 FVNMMLGKRSAVLKLVMMFEGKANESSPK 136
Score = 27.5 bits (61), Expect = 1.5
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 103 YRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSAFRSYDTDQDGVITI 157
+ + L + +R + D L A + +D + +G I +
Sbjct: 15 FGILKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDL 69
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 57.9 bits (140), Expect = 6e-12
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F +FD + I + E A L+D + + +G + + DF+
Sbjct: 30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84
Score = 50.9 bits (122), Expect = 3e-09
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+ F+ D ++ IS +E + + E + + +G + + D
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNR-RVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Query: 64 F 64
F
Sbjct: 82 F 82
Score = 38.2 bits (89), Expect = 2e-04
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 110 IGTMLKKFDRFGRGTILFDDFIQCCITLYA-LTSA-----FRSYDTDQDGVITIHYEQFL 163
I + FD TI ++F C LT + + G + Y FL
Sbjct: 26 ITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKG--RLKYPDFL 83
Query: 164 DM 165
Sbjct: 84 SR 85
Score = 27.1 bits (60), Expect = 1.7
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 138 YALTSAFRSYDTDQDGVIT 156
+A+T F ++DT + I+
Sbjct: 24 HAITQEFENFDTMKTNTIS 42
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 56.8 bits (138), Expect = 1e-11
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F FD D G+I EL + G + + ++++ D G GTI F++F+
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Score = 40.3 bits (95), Expect = 2e-05
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFED 63
F D D G IS EL + G NP E + +I D+ G+I FE+
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLG----QNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 64 F 64
F
Sbjct: 78 F 78
Score = 27.6 bits (62), Expect = 0.92
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 143 AFRSYDTDQDGVITIH 158
AF +D D G I+
Sbjct: 25 AFDMFDADGGGDISTK 40
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 59.0 bits (143), Expect = 2e-11
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 32/155 (20%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-G 65
L++ F +D+ +G +S ++ Q NP +I F + F F
Sbjct: 31 LYSRFTSLDKGENGTLSREDFQRIPELA----INP-LGDRIINAFFSEGEDQVNFRGFMR 85
Query: 66 ALWKYVTDWQN---------------------CFRSFDRDNSGNIDKSELSAALT-TFGY 103
L + N FR +D D I + EL L G
Sbjct: 86 TLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGV 145
Query: 104 RLSDRMIGT----MLKKFDRFGRGTILFDDFIQCC 134
+SD +G+ +++ D+ G I F +F++
Sbjct: 146 NISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Score = 48.2 bits (115), Expect = 1e-07
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 26/108 (24%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
+T + F S D+ +G + + + L DR+I F G + F F
Sbjct: 28 ITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRII----NAFFSEGEDQVNFRGF 83
Query: 131 IQCCITLYALTS----------------------AFRSYDTDQDGVIT 156
++ + AFR YD D+D I+
Sbjct: 84 MRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKIS 131
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 55.7 bits (135), Expect = 3e-11
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 77 CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ FD+DN + EL + G + + I ++K +D+ G + F+
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74
Score = 42.6 bits (101), Expect = 2e-06
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
FQ D+D ++A+EL + P + + ++ +DK N G E F
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANP-TKQKISEIVKDYDKDNSGKFDQETF 72
Score = 26.5 bits (59), Expect = 1.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 143 AFRSYDTDQDGVITIH 158
AF+ +D D D +T
Sbjct: 19 AFQLFDKDNDNKLTAE 34
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 56.8 bits (137), Expect = 4e-11
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 47 MIGMFDKHNRGSITFEDFGA---LWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGY 103
+ N+ + + L + ++ + FD + +G+ID L L G
Sbjct: 20 QEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGV 79
Query: 104 RLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
+ + ++++ T + DF++
Sbjct: 80 PKTHLELKRLIREVSSGSEETFSYSDFLRM 109
Score = 47.6 bits (113), Expect = 1e-07
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFED 63
E + D + +G I L+ L G P ++ +I + + ++ D
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEKLG--VPKTHLELKRLIREVSSGSEETFSYSD 105
Query: 64 FGAL-WKYVTDWQNCFRSFDRDNSG 87
F + + ++ N
Sbjct: 106 FLRMMLGKRSAILRMILMYEEKNKE 130
Score = 27.6 bits (61), Expect = 1.3
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 113 MLKKFDRFGRGTILFDDFIQCCIT---LYALTSAFRSYDTDQDGVITI 157
++ + + + + L A + +D + +G I I
Sbjct: 20 QEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDI 67
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 57.9 bits (140), Expect = 5e-11
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 22/158 (13%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVTD 73
+ SG + E + V M FD + +I F ++ AL +
Sbjct: 33 EECPSGTLFMHEFKRFFKVPDNEEATQY-VEAMFRAFDTNGDNTIDFLEYVAALNLVLRG 91
Query: 74 WQN-----CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFD 128
F+ +D+D +G ID+ EL + + + ++ + + D
Sbjct: 92 TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVD 151
Query: 129 DFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
F D + DG ++ +F++
Sbjct: 152 RI-------------FLLVDENGDGQLS--LNEFVEGA 174
Score = 55.6 bits (134), Expect = 3e-10
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 71 VTDWQNCFRSF-DRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDD 129
Q ++ F + SG + E + + + M + FD G TI F +
Sbjct: 21 AAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLE 80
Query: 130 FIQCCITLYALTS------AFRSYDTDQDGVITIHYEQFLDMVFSL 169
++ + T F+ YD D++G I ++ LD+V S+
Sbjct: 81 YVAALNLVLRGTLEHKLKWTFKIYDKDRNGCID--RQELLDIVESI 124
Score = 34.4 bits (79), Expect = 0.010
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKY 70
F+ D+DR+G I EL + I K + E G L
Sbjct: 101 FKIYDKDRNGCIDRQELLD--------------IVESIYKLKKACSVEVEAEQQGKLLTP 146
Query: 71 VTDWQNCFRSFDRDNSGNIDKSE 93
F D + G + +E
Sbjct: 147 EEVVDRIFLLVDENGDGQLSLNE 169
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 54.0 bits (131), Expect = 7e-11
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
F FD++ G + E F + I ++ D G G + D+F C
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 10 IFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68
+F+ D+++ G +S DE + F E + D G + ++F +
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFS--PYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Query: 69 K 69
+
Sbjct: 64 E 64
Score = 25.1 bits (56), Expect = 3.7
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 143 AFRSYDTDQDGVITI 157
F +D ++DG +++
Sbjct: 6 VFEKFDKNKDGKLSL 20
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 54.1 bits (131), Expect = 7e-11
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ D + G + E+ A ++ +++++ + K D G G I ++F +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Score = 44.5 bits (106), Expect = 3e-07
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
+F+ +D + G +S +E++ +S N + ++L+ D G I +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 67 LWK 69
+
Sbjct: 61 FYG 63
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 44 VRLMIGMFDKHNRGSITFEDFGALWKYV------TDWQNCFRSFDRDNSGNIDKSELSAA 97
+ D + G++++E+ A Q F+S D D +G ID++E +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 98 LTT 100
+
Sbjct: 62 YGS 64
Score = 32.1 bits (74), Expect = 0.013
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN 33
+ + L IF+ +D D +G I +E +
Sbjct: 34 NEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Score = 25.2 bits (56), Expect = 3.3
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 140 LTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
+ F+ D + DG ++ YE+ V
Sbjct: 2 AEALFKEIDVNGDGAVS--YEEVKAFVSKK 29
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 55.8 bits (135), Expect = 8e-11
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 39 FNPETVRLMIGMFDKHNRGSITFEDFGAL-------WKYVTDWQNCFRSFDRDNSGNIDK 91
P + M+ + +ED + ++V++ F I
Sbjct: 1 MEPT-EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITA 59
Query: 92 SELSAALTTFGY-RLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
L G +S M+++ D G G + +F
Sbjct: 60 ESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101
Score = 44.3 bits (105), Expect = 2e-06
Identities = 10/62 (16%), Positives = 20/62 (32%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
L F + I+A+ L+ + E + M+ D G++
Sbjct: 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Query: 63 DF 64
+F
Sbjct: 98 EF 99
Score = 35.0 bits (81), Expect = 0.004
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 7/52 (13%)
Query: 113 MLKKFDRFGRGTILFDDFIQCCITLYA-------LTSAFRSYDTDQDGVITI 157
ML + + ++D + L F + +IT
Sbjct: 8 MLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITA 59
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 53.3 bits (129), Expect = 2e-10
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
FR+FD+D G+I EL A+ G L + M+++ D G + +++F +
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFAR 66
Score = 44.0 bits (105), Expect = 5e-07
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
F+ D+D G I+ DEL+ A++ G P E + MI D G + +E+F
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLG--QPLPQEELDAMIREADVDQDGRVNYEEF 64
Score = 26.3 bits (59), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 140 LTSAFRSYDTDQDGVITI 157
L AFR++D D DG IT+
Sbjct: 8 LQVAFRAFDQDGDGHITV 25
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 54.3 bits (131), Expect = 2e-10
Identities = 11/62 (17%), Positives = 26/62 (41%)
Query: 71 VTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
+ ++ + FD + +G+ID L L G + + ++ + T + DF
Sbjct: 31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDF 90
Query: 131 IQ 132
++
Sbjct: 91 LR 92
Score = 40.8 bits (96), Expect = 2e-05
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 11 FQGVDRDRSGFISADELQHALSN-GTWTPFNP--ETVRLMIGMFDKHNRGSITFEDF 64
+ D + +G I L+ L G ++ +IG + + ++ DF
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLG----VPKTHLELKKLIGEVSSGSGETFSYPDF 90
Score = 27.7 bits (62), Expect = 0.90
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 143 AFRSYDTDQDGVITI 157
+ +D + +G I I
Sbjct: 37 KYMEFDLNGNGDIDI 51
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 53.4 bits (129), Expect = 2e-10
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ FD+D +G I SEL + G +L+D + M+K+ D G G + +++F++
Sbjct: 15 FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69
Score = 45.3 bits (108), Expect = 3e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ E L F+ D+D++G+ISA EL+H + N G E V MI D G + +
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMINLG--EKLTDEEVEQMIKEADLDGDGQVNY 64
Query: 62 EDF 64
E+F
Sbjct: 65 EEF 67
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 140 LTSAFRSYDTDQDGVITI 157
L AF+ +D DQ+G I+
Sbjct: 11 LKEAFKVFDKDQNGYISA 28
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 52.9 bits (128), Expect = 3e-10
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
F+ D DNSG I EL L G L + I ++ D GTI + +FI
Sbjct: 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82
Score = 40.2 bits (95), Expect = 2e-05
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+F+ +D D SG I+ DEL+ L E ++ ++ D G+I + +F
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESE-IKDLMDAADIDKSGTIDYGEF 81
Score = 27.1 bits (61), Expect = 1.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 143 AFRSYDTDQDGVITI 157
F+ DTD G IT
Sbjct: 28 LFKMIDTDNSGTITF 42
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 54.8 bits (132), Expect = 6e-10
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVTD 73
SG ++ E + +P + V M FD + G I F ++ AL +
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKG 84
Query: 74 W-----QNCFRSFDRDNSGNIDKSELSAALTTFGY-------RLSDRMIGTMLKKFDRFG 121
+ F+ +D D +G ID+ EL + ++ + K D G
Sbjct: 85 KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDING 144
Query: 122 RGTILFDDFIQCC 134
G + ++F++
Sbjct: 145 DGELSLEEFMEGV 157
Score = 39.4 bits (92), Expect = 2e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN--GTWTPFNPET----VRLMIGMFDKHNRGSIT 60
L F+ D D +G I EL + + T ++ D + G ++
Sbjct: 90 LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Query: 61 FEDF 64
E+F
Sbjct: 150 LEEF 153
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 52.7 bits (127), Expect = 7e-10
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 42 ETVRLMIGMFDKHNRGSITFEDFGAL----WKYVTDWQNCFRSFDRDNSGNIDKSELSAA 97
E ++ IG F S + F + K D + F D+D SG I++ EL +
Sbjct: 9 EDIKKAIGAFTAA--DSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSI 66
Query: 98 LTTF---GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
L F LS + T++ D+ G G I ++F
Sbjct: 67 LKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104
Score = 48.1 bits (115), Expect = 4e-08
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDKHNRGS 58
S + + +F +D+D+SGFI DEL L + + + + ++ DK G
Sbjct: 37 KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGK 96
Query: 59 ITFEDFGALWK 69
I E+F L
Sbjct: 97 IGVEEFSTLVA 107
Score = 30.3 bits (69), Expect = 0.11
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 100 TFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI----TLYALTSAFRSYDTDQDGVI 155
+ LS I + F + F Q + + F D D+ G I
Sbjct: 1 SMTDLLSAEDIKKAIGAFT--AADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFI 58
Query: 156 T 156
Sbjct: 59 E 59
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 52.3 bits (126), Expect = 8e-10
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
FR D+D +G I +EL +T G +L+D + M+++ D G G + +++F+Q
Sbjct: 35 FRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89
Score = 43.8 bits (104), Expect = 1e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITF 61
S E + F+ D+D +G+ISA EL+H ++N G E V MI D G + +
Sbjct: 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNY 84
Query: 62 EDF 64
E+F
Sbjct: 85 EEF 87
Score = 25.3 bits (56), Expect = 6.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 143 AFRSYDTDQDGVIT 156
AFR D D +G I+
Sbjct: 34 AFRVEDKDGNGYIS 47
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 54.0 bits (130), Expect = 1e-09
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 32/158 (20%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVTD 73
SG + E + L + + + FD + G + F +F A+ + +
Sbjct: 30 MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQE 89
Query: 74 WQN-----CFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFD 128
F+ +D D +G+IDK+EL L+ + + + +
Sbjct: 90 KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAV-QALNGQQTLSPEEFINLV-------- 140
Query: 129 DFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
F D + DG +T E+F++ +
Sbjct: 141 ---------------FHKIDINNDGELT--LEEFINGM 161
Score = 51.3 bits (123), Expect = 1e-08
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 75 QNCFRSF-DRDNSGNIDKSELSAALTTFG-YRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
+R+F SG E L G + +++ I + FD G + F +FI
Sbjct: 22 HVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIA 81
Query: 133 CCITLYALTS------AFRSYDTDQDGVITIHYEQFLDMVFSL 169
+ F+ YD D +G I + LDM ++
Sbjct: 82 AVNLIMQEKMEQKLKWYFKLYDADGNGSID--KNELLDMFMAV 122
Score = 44.0 bits (104), Expect = 5e-06
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHAL-----SNGTWTPFNPETVRLMIGMFDKHNRGSI 59
+ L F+ D D +G I +EL NG T E + L+ D +N G +
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGEL 152
Query: 60 TFEDFGALWKYVTDW-QNCFRSFDRDNSGNIDKSE 93
T E+F D + ++SFD N + +
Sbjct: 153 TLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNG 187
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 53.7 bits (129), Expect = 1e-09
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMF-DKHNRGSITFEDFGALWKYVTD-------WQNCFRSFDRDNSGN 88
T F ++ F G ++ E+F ++ ++ FR+FD + G
Sbjct: 20 TDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
ID E AL+ ++ + +D G G I + ++ +Y + S+
Sbjct: 80 IDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMP 139
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
FR DT++DG ++ E+F+
Sbjct: 140 EDESTPEKRTEKIFRQMDTNRDGKLS--LEEFIRGA 173
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 19/107 (17%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+F ++F+ D + G I E ALS + + ++ M+D G I+ +
Sbjct: 63 KFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLE-QKLKWAFSMYDLDGNGYISKAEM 121
Query: 65 GALWKYVTD------------------WQNCFRSFDRDNSGNIDKSE 93
+ + + + FR D + G + E
Sbjct: 122 LEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
Score = 33.3 bits (76), Expect = 0.021
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALS-----NGTWTPFNP------ETVRLMIG 49
+ L F D D +G+IS E+ + + + +
Sbjct: 95 GKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFR 154
Query: 50 MFDKHNRGSITFEDF 64
D + G ++ E+F
Sbjct: 155 QMDTNRDGKLSLEEF 169
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 51.9 bits (125), Expect = 2e-09
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN--GTWTPFNPETVRLMIGMFDKHNRGSIT 60
+ + + +F +D+D+SGFI +ELQ L N + + + D G I
Sbjct: 40 TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIG 99
Query: 61 FEDFGALWK 69
E+F +L K
Sbjct: 100 VEEFQSLVK 108
Score = 48.0 bits (115), Expect = 4e-08
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 57 GSITFEDF----GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGY---RLSDRM 109
S ++ F G K + F D+D SG I++ EL L F L+
Sbjct: 23 DSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82
Query: 110 IGTMLKKFDRFGRGTILFDDFIQ 132
L D G G I ++F
Sbjct: 83 TKAFLAAGDTDGDGKIGVEEFQS 105
Score = 29.2 bits (66), Expect = 0.30
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLY----ALTSAFRSYDTDQDGVIT 156
LS + I + L + + F + F D D+ G I
Sbjct: 3 ITDILSAKDIESALSSCQ--AADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIE 60
Query: 157 I 157
Sbjct: 61 E 61
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 50.6 bits (122), Expect = 2e-09
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYR-LSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ FD + G ID E + G L+D + +K+ D G G I +F+
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69
Score = 48.7 bits (117), Expect = 1e-08
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
E + F+ D + G I DE + + P V + D+ G I
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIP 65
Query: 63 DF 64
+F
Sbjct: 66 EF 67
Score = 26.4 bits (59), Expect = 2.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 140 LTSAFRSYDTDQDGVITI 157
+ AF+ +D + DGVI
Sbjct: 10 ILRAFKVFDANGDGVIDF 27
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 50.4 bits (121), Expect = 3e-09
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+F D +RSG + +E + + P + D G+ITF++F
Sbjct: 32 VFAACDANRSGRLEREEFRALCTE---LRVRPADAEAVFQRLDADRDGAITFQEF 83
Score = 47.7 bits (114), Expect = 4e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F + D + SG +++ E A T + + ++ D G I F +F +
Sbjct: 33 FAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFAR 85
Score = 25.0 bits (55), Expect = 6.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 140 LTSAFRSYDTDQDGVIT 156
L S F + D ++ G +
Sbjct: 29 LRSVFAACDANRSGRLE 45
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 50.4 bits (121), Expect = 5e-09
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 42 ETVRLMIGMFDKHNRGSITFEDFGAL----WKYVTDWQNCFRSFDRDNSGNIDKSELSAA 97
+ + S + + F + K + + FR D D SG I++ EL
Sbjct: 9 SDIAAALRDCQAP--DSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYF 66
Query: 98 LTTFGY---RLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
L F L+ T L D G G I ++F +
Sbjct: 67 LQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
Score = 48.4 bits (116), Expect = 3e-08
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWTP--FNPETVRLMIGMFDKHNRGSIT 60
S L IF+ +D D+SGFI DEL++ L + + D G I
Sbjct: 39 SSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIG 98
Query: 61 FEDFGAL 67
E+F +
Sbjct: 99 AEEFQEM 105
Score = 30.7 bits (70), Expect = 0.084
Identities = 14/61 (22%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----LTSAFRSYDTDQDGVIT 156
LS I L+ + F Q L FR D DQ G I
Sbjct: 2 LTDILSPSDIAAALRDCQ--APDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIE 59
Query: 157 I 157
Sbjct: 60 E 60
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 52.3 bits (125), Expect = 5e-09
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 30/158 (18%)
Query: 37 TPFNPETVRLMIGMF-DKHNRGSITFEDFGALWKYVTDW-------QNCFRSFDRDNSGN 88
T F+ E + F G IT + F +++ Q+ FRSFD + G
Sbjct: 28 TKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT 87
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
+D E AL +++ + +D G GTI ++ ++ + ++ + +
Sbjct: 88 LDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKL 147
Query: 144 ---------------FRSYDTDQDGVITIHYEQFLDMV 166
++ + + D +T ++F++
Sbjct: 148 LPDDENTPEKRAEKIWKYFGKNDDDKLT--EKEFIEGT 183
Score = 39.6 bits (92), Expect = 2e-04
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 17/130 (13%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+ ++F+ D + G + E AL T N + + ++D G+I+ +
Sbjct: 71 AYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTN-QKLEWAFSLYDVDGNGTISKNEV 129
Query: 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
+ F+ ++ + E + ++ + K F +
Sbjct: 130 LEI------VMAIFKMITPEDVKLLPDDENTP----------EKRAEKIWKYFGKNDDDK 173
Query: 125 ILFDDFIQCC 134
+ +FI+
Sbjct: 174 LTEKEFIEGT 183
Score = 31.9 bits (72), Expect = 0.066
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQH---------ALSNGTWTPFNPET----VRLM 47
+ + L F D D +G IS +E+ + P + T +
Sbjct: 103 GKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKI 162
Query: 48 IGMFDKHNRGSITFEDF 64
F K++ +T ++F
Sbjct: 163 WKYFGKNDDDKLTEKEF 179
Score = 26.1 bits (57), Expect = 5.1
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 9 NIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLM 47
I++ ++ ++ E N E +RL+
Sbjct: 161 KIWKYFGKNDDDKLTEKEFIEGTLA------NKEILRLI 193
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 50.3 bits (121), Expect = 6e-09
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 57 GSITFEDF----GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF---GYRLSDRM 109
S ++ F G K D + F D+D SG I++ EL L F L+D
Sbjct: 23 DSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAE 82
Query: 110 IGTMLKKFDRFGRGTILFDDFIQ 132
LK D G G I D++
Sbjct: 83 TKAFLKAGDSDGDGAIGVDEWAA 105
Score = 49.6 bits (119), Expect = 1e-08
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDKHNRGSIT 60
S + + F +D+D+SGFI DEL+ L + + + D G+I
Sbjct: 40 SADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIG 99
Query: 61 FEDFGAL 67
+++ AL
Sbjct: 100 VDEWAAL 106
Score = 36.8 bits (86), Expect = 5e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----LTSAFRSYDTDQDGVIT 156
F L+D + LK + + + F + AF D D+ G I
Sbjct: 3 FSGILADADVAAALKACE--AADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIE 60
Query: 157 I 157
Sbjct: 61 E 61
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 50.0 bits (120), Expect = 7e-09
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 57 GSITFEDFGALW----KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGY---RLSDRM 109
+ + F + ++ FR D D SG +D EL L F L++
Sbjct: 22 DTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESE 81
Query: 110 IGTMLKKFDRFGRGTILFDDFIQ 132
+++ D G G I D+F +
Sbjct: 82 TKSLMDAADNDGDGKIGADEFQE 104
Score = 47.3 bits (113), Expect = 7e-08
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSN--GTWTPFNPETVRLMIGMFDKHNRGSIT 60
S + +IF+ +D D+SG++ DEL++ L + ++ D G I
Sbjct: 39 SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIG 98
Query: 61 FEDFGAL 67
++F +
Sbjct: 99 ADEFQEM 105
Score = 27.6 bits (62), Expect = 0.99
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 101 FGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI----TLYALTSAFRSYDTDQDGVIT 156
LS I L++ T F Q + + FR D DQ G +
Sbjct: 2 ITDILSAEDIAAALQECQ--DPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLD 59
Query: 157 I 157
Sbjct: 60 G 60
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 51.7 bits (124), Expect = 8e-09
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 41/163 (25%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVTD 73
G I +E Q AL N R+ +FD G I F +F +L +
Sbjct: 49 SIIDDGLIHKEEFQLALFRNRNRR-NLFADRIF-DVFDVKRNGVIEFGEFVRSLGVFHPS 106
Query: 74 WQN------CFRSFDRDNSGNIDKSELSAALTTF----GYRLSDRMIGTMLKKFDRFGRG 123
F+ +D +G I++ EL + LS+ MI M+ K
Sbjct: 107 APVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKA------ 160
Query: 124 TILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
F D DG I +++ D V
Sbjct: 161 --------------------FVQADRKNDGKID--IDEWKDFV 181
Score = 37.1 bits (86), Expect = 0.001
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 11 FQGVDRDRSGFISADELQHALS---NGTWTPFNPETVRL----MIGMFDKHNRGSITFED 63
F+ D ++GFI +EL+ + + + + + + + D+ N G I ++
Sbjct: 117 FKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
Query: 64 F 64
+
Sbjct: 177 W 177
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.8 bits (117), Expect = 1e-08
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNP----ETVRLMIGMFDKHNRGSITF 61
L F+ +D + G+++A ELQ + + + E +I M DK++ G I+
Sbjct: 9 LEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68
Query: 62 EDF 64
E+F
Sbjct: 69 EEF 71
Score = 46.5 bits (111), Expect = 9e-08
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGT------MLKKFDRFGRGTILFDDFI 131
F+ D + G + EL + T + ++K D+ G I ++F+
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72
Query: 132 Q 132
Sbjct: 73 N 73
Score = 26.0 bits (58), Expect = 2.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 143 AFRSYDTDQDGVIT 156
AF+ D + DG +T
Sbjct: 12 AFKKLDANGDGYVT 25
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 48.3 bits (116), Expect = 1e-08
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ FD + G I SEL+ AL T G S + M+ + D G G I F++FI
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Score = 44.1 bits (105), Expect = 5e-07
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFG 65
+ IF+ D + G IS EL AL G+ + + V+ M+ D G I F +F
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTS---ADEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 66 AL 67
+
Sbjct: 62 SF 63
Score = 26.0 bits (58), Expect = 2.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 140 LTSAFRSYDTDQDGVIT 156
+ F+ +DT+ DG I+
Sbjct: 5 MERIFKRFDTNGDGKIS 21
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 51.4 bits (123), Expect = 1e-08
Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMF-DKHNRGSITFEDFGALWKYVTD-------WQNCFRSFDRDNSGN 88
+ F + ++++ F ++ G + E F ++ F +FD D++G
Sbjct: 59 SKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGA 118
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
+ + L+ + +D G I ++ + +Y +
Sbjct: 119 VSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPV 178
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
F+ D ++DGV+T ++F++
Sbjct: 179 LKEDAPRQHVETFFQKMDKNKDGVVT--IDEFIESC 212
Score = 45.3 bits (107), Expect = 2e-06
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 75 QNCFRSF-DRDNSGNIDKSELSAALTTFGYRLSDRMIGT-MLKKFDRFGRGTILFDDFIQ 132
Q +R F + SG +++ + F + + FD G + F+DFI+
Sbjct: 67 QILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIK 126
Query: 133 CCITL------YALTSAFRSYDTDQDGVITIHYEQFLDMVFSLK 170
L L AF YD ++DG IT E+ LD++ ++
Sbjct: 127 GLSILLRGTVQEKLNWAFNLYDINKDGYIT--KEEMLDIMKAIY 168
Score = 37.9 bits (88), Expect = 6e-04
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 19/140 (13%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
+F D D +G +S ++ LS E + ++D + G IT E+ + K
Sbjct: 107 LFNAFDTDHNGAVSFEDFIKGLSILLRGTVQ-EKLNWAFNLYDINKDGYITKEEMLDIMK 165
Query: 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDD 129
+ + + + + + T +K D+ G + D+
Sbjct: 166 ------AIYDMMGKCTYPVLKEDAP------------RQHVETFFQKMDKNKDGVVTIDE 207
Query: 130 FIQCCITLYALTSAFRSYDT 149
FI+ C + + + ++
Sbjct: 208 FIESCQKDENIMRSMQLFEN 227
Score = 35.2 bits (81), Expect = 0.006
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHAL-------SNGTWTPFNPETVRL----MIG 49
+E L F D ++ G+I+ +E+ + T+ + R
Sbjct: 134 GTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQ 193
Query: 50 MFDKHNRGSITFEDF 64
DK+ G +T ++F
Sbjct: 194 KMDKNKDGVVTIDEF 208
Score = 25.6 bits (56), Expect = 7.6
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 9 NIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFD 52
FQ +D+++ G ++ DE + + +R M +F+
Sbjct: 190 TFFQKMDKNKDGVVTIDEFIESCQK------DENIMRSM-QLFE 226
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 48.8 bits (117), Expect = 1e-08
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F+ FD + G I SEL AL T G ++ + M+ + D G G I FD+F
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTD 70
Score = 42.2 bits (100), Expect = 4e-06
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRGSITFEDFG 65
IF+ D + G IS+ EL AL G+ T P+ VR M+ D G I+F++F
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGSVT---PDEVRRMMAEIDTDGDGFISFDEFT 69
Query: 66 AL 67
Sbjct: 70 DF 71
Score = 29.9 bits (68), Expect = 0.13
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 50 MFDKHNRGSITFEDFGALWKYV-----TDWQNCFRSFDRDNSGNIDKSE 93
FD + G I+ + G K + + + D D G I E
Sbjct: 19 RFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDE 67
Score = 26.5 bits (59), Expect = 2.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 140 LTSAFRSYDTDQDGVITI 157
F+ +DT+ DG I+
Sbjct: 13 RERIFKRFDTNGDGKISS 30
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 48.7 bits (117), Expect = 2e-08
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 57 GSITFEDF----GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTF---GYRLSDRM 109
S ++F G K + D + F D+D SG I++ EL L F L+D
Sbjct: 22 DSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAE 81
Query: 110 IGTMLKKFDRFGRGTILFDDFIQ 132
L D+ G G I D+F
Sbjct: 82 TKAFLADGDKDGDGMIGVDEFAA 104
Score = 47.6 bits (114), Expect = 6e-08
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 3 SREFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDKHNRGSIT 60
S + + F +D+D+SGFI DEL+ L N + + + + DK G I
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIG 98
Query: 61 FEDFGAL 67
++F A+
Sbjct: 99 VDEFAAM 105
Score = 31.8 bits (73), Expect = 0.038
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 105 LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----LTSAFRSYDTDQDGVITI 157
L D + L + +F + AF D D+ G I
Sbjct: 6 LKDADVAAALAACS--AADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEE 60
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 48.7 bits (117), Expect = 3e-08
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 40 NPETVRLMIGMFDKHNRGSITFEDFGAL----WKYVTDWQNCFRSFDRDNSGNIDKSELS 95
+ ++ + GS + F AL D + F++ D D SG I++ EL
Sbjct: 8 KADDIKKALDAVKAE--GSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELK 65
Query: 96 AALTTF---GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
L +F G L+D LK D+ G G I D+F
Sbjct: 66 FVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDKHNRGS 58
S + +F+ +D D SGFI +EL+ L + + + DK G
Sbjct: 38 AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGK 97
Query: 59 ITFEDFGAL 67
I ++F L
Sbjct: 98 IGIDEFETL 106
Score = 32.2 bits (74), Expect = 0.028
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 6/58 (10%)
Query: 104 RLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----LTSAFRSYDTDQDGVITI 157
L I L G+ F + F++ D D G I
Sbjct: 6 LLKADDIKKALDAVK--AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEE 61
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 50.6 bits (121), Expect = 3e-08
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 41/163 (25%)
Query: 15 DRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVTD 73
G I+ +E Q AL + R+ +FD + G + FE+F AL + +
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKKE-SLFADRVF-DLFDTKHNGILGFEEFARALSVFHPN 117
Query: 74 WQN------CFRSFDRDNSGNIDKSELSAALTTF----GYRLSDRMIGTMLKKFDRFGRG 123
F+ +D G I++ E+ + G L D +I ++ K
Sbjct: 118 APIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKT------ 171
Query: 124 TILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMV 166
F DT DG I E++ +V
Sbjct: 172 --------------------FEEADTKHDGKID--KEEWRSLV 192
Score = 25.9 bits (57), Expect = 6.8
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 9 NIFQGVDRDRSGFISADELQHALSNGTW 36
F+ D G I +E + +
Sbjct: 170 KTFEEADTKHDGKIDKEEWRSLVLRHPS 197
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 49.4 bits (118), Expect = 4e-08
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 28/155 (18%)
Query: 37 TPFNPETVRLMIGMF-DKHNRGSITFEDFGALWKYVTDW-------QNCFRSFDRDNSGN 88
T F ++++ F ++ G + E F ++ F +FD +G+
Sbjct: 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
+ + AL+ + +D G I ++ + +Y +
Sbjct: 73 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 132
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDM 165
F+ D ++DG++T ++FL+
Sbjct: 133 LKEDTPRQHVDVFFQKMDKNKDGIVT--LDEFLES 165
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 19/140 (13%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
+F D ++G + ++ ALS + E +R ++D + G I E+ +
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVH-EKLRWTFNLYDINKDGYINKEEMMDI-- 117
Query: 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDD 129
+ + + + + + + +K D+ G + D+
Sbjct: 118 ----VKAIYDMMGKYTYPVLKEDTP------------RQHVDVFFQKMDKNKDGIVTLDE 161
Query: 130 FIQCCITLYALTSAFRSYDT 149
F++ + + + +
Sbjct: 162 FLESXQEDDNIMRSLQLFQN 181
Score = 33.2 bits (76), Expect = 0.023
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQH-------ALSNGTWTPFNPETVRL----MIG 49
E L F D ++ G+I+ +E+ + T+ +T R
Sbjct: 88 GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 147
Query: 50 MFDKHNRGSITFEDF 64
DK+ G +T ++F
Sbjct: 148 KMDKNKDGIVTLDEF 162
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 49.4 bits (118), Expect = 5e-08
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMFDK-HNRGSITFEDF-------GALWKYVTDWQNCFRSFDRDNSGN 88
T F+ + ++ F K G + +F + F FD D +G
Sbjct: 20 TRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
ID E AL+ + + + +D G I +D+ ++ +Y + +
Sbjct: 80 IDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLP 139
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
F D ++DG +T E+F +
Sbjct: 140 EDEDTPEKRVNKIFNMMDKNKDGQLT--LEEFCEGS 173
Score = 40.6 bits (95), Expect = 7e-05
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
F +F D D++G+I E ALS + N + + ++D N G I++++
Sbjct: 63 AFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELN-DKLIWAFQLYDLDNNGLISYDEM 121
Query: 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
+ ++ D+ ++ + + D+ G
Sbjct: 122 LRIVD------AIYKMVGSMVKLPEDEDTP------------EKRVNKIFNMMDKNKDGQ 163
Query: 125 ILFDDFIQCCITLYALTSAFRSYDT 149
+ ++F + + SA YD
Sbjct: 164 LTLEEFCEGSKRDPTIVSALSLYDG 188
Score = 34.8 bits (80), Expect = 0.005
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHAL-----SNGTWTPFNP------ETVRLMIG 49
+ L FQ D D +G IS DE+ + G+ + V +
Sbjct: 95 GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFN 154
Query: 50 MFDKHNRGSITFEDF 64
M DK+ G +T E+F
Sbjct: 155 MMDKNKDGQLTLEEF 169
Score = 26.7 bits (59), Expect = 3.0
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDK 53
+ + IF +D+++ G ++ +E +P V + ++D
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEFCEGSKR------DPTIVSAL-SLYDG 188
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 47.2 bits (113), Expect = 8e-08
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWT--PFNPETVRLMIGMFDKHNRGS 58
+ + +F+ +D+D+SGFI +EL+ L + N + ++ D + G
Sbjct: 37 GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGK 96
Query: 59 ITFEDFGAL 67
I ++F +
Sbjct: 97 IGADEFAKM 105
Score = 45.3 bits (108), Expect = 4e-07
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 44 VRLMIGMFDKHNRGSITFEDFGALWKYVTDWQN----CFRSFDRDNSGNIDKSELSAALT 99
+ I F G+ ++ F L F D+D SG I++ EL L
Sbjct: 11 INKAISAFKDP--GTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLK 68
Query: 100 TF---GYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
F G L+D +L D G I D+F +
Sbjct: 69 GFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAK 104
Score = 32.5 bits (75), Expect = 0.021
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 105 LSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA----LTSAFRSYDTDQDGVITI 157
L I + F GT + F + F D DQ G I
Sbjct: 6 LKADDINKAISAFK--DPGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEE 60
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 48.3 bits (115), Expect = 1e-07
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMFDK-HNRGSITFEDFGALWKYVTD-------WQNCFRSFDRDNSGN 88
T F+ ++ F + G + EDF ++K + F FD+DN+G
Sbjct: 20 TYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGF 79
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
I E L+T + + + +D G I FD+ + ++Y + +
Sbjct: 80 IHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLN 139
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
F+ D ++DG IT ++F +
Sbjct: 140 EDEATPEMRVKKIFKLMDKNEDGYIT--LDEFREGS 173
Score = 39.5 bits (92), Expect = 2e-04
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+F ++F D+D +GFI +E LS + E + ++D ++ G ITF++
Sbjct: 63 DFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLE-EKLSWAFELYDLNHDGYITFDEM 121
Query: 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
+ + ++ + N D++ + + + K D+ G
Sbjct: 122 LTIVA------SVYKMMGSMVTLNEDEATP------------EMRVKKIFKLMDKNEDGY 163
Query: 125 ILFDDFIQCCITLYALTSAFRSYDT 149
I D+F + ++ A YD
Sbjct: 164 ITLDEFREGSKVDPSIIGALNLYDG 188
Score = 33.7 bits (77), Expect = 0.015
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALS-----NGTWTPFNP------ETVRLMIGM 50
E L F+ D + G+I+ DE+ ++ G+ N V+ + +
Sbjct: 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKL 155
Query: 51 FDKHNRGSITFEDF 64
DK+ G IT ++F
Sbjct: 156 MDKNEDGYITLDEF 169
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 47.0 bits (111), Expect = 6e-07
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMFDKH-NRGSITFEDFGALWKYV-------TDWQNCFRSFDRDNSGN 88
T F + ++ + F G + + F ++ T F +FD D +G
Sbjct: 86 TKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGA 145
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
I + L+ + +D G I ++ + ++Y +
Sbjct: 146 IHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPI 205
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
F+ D +QDGV+T ++FL+
Sbjct: 206 LREDAPLEHVERFFQKMDRNQDGVVT--IDEFLETC 239
Score = 38.1 bits (88), Expect = 5e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHAL-------SNGTWTPFNPETVRL----MIG 49
E L F D ++ G I+ +E+ + T+ +
Sbjct: 161 GTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQ 220
Query: 50 MFDKHNRGSITFEDF 64
D++ G +T ++F
Sbjct: 221 KMDRNQDGVVTIDEF 235
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 46.1 bits (109), Expect = 9e-07
Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 28/156 (17%)
Query: 37 TPFNPETVRLMIGMF-DKHNRGSITFEDFGALWKYVTDWQN-------CFRSFDRDNSGN 88
T F ++++ F ++ G + E F ++ + F +FD +G+
Sbjct: 46 TNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105
Query: 89 IDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA----- 143
+ + AL+ + +D G I ++ + +Y +
Sbjct: 106 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 165
Query: 144 -------------FRSYDTDQDGVITIHYEQFLDMV 166
F+ D ++DG++T ++FL+
Sbjct: 166 LKEDTPRQHVDVFFQKMDKNKDGIVT--LDEFLESC 199
Score = 38.4 bits (89), Expect = 4e-04
Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
+F D ++G + ++ ALS + E +R ++D + G I E+ + K
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVH-EKLRWTFNLYDINKDGYINKEEMMDIVK 152
Query: 70 YVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDD 129
+ + + + + + +K D+ G + D+
Sbjct: 153 ------AIYDMMGKYTYPVLKEDTP------------RQHVDVFFQKMDKNKDGIVTLDE 194
Query: 130 FIQCCITLYALTSAFRSYDT 149
F++ C + + + +
Sbjct: 195 FLESCQEDDNIMRSLQLFQN 214
Score = 34.2 bits (78), Expect = 0.012
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHAL-------SNGTWTPFNPETVRL----MIG 49
E L F D ++ G+I+ +E+ + T+ +T R
Sbjct: 121 GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 180
Query: 50 MFDKHNRGSITFEDF 64
DK+ G +T ++F
Sbjct: 181 KMDKNKDGIVTLDEF 195
Score = 25.7 bits (56), Expect = 7.5
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 9 NIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLM 47
FQ +D+++ G ++ DE + + +R +
Sbjct: 177 VFFQKMDKNKDGIVTLDEFLESCQE------DDNIMRSL 209
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 46.4 bits (109), Expect = 1e-06
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 73 DWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQ 132
+++ F FDR +G +D + A L + GY + + ++ D G + F FI
Sbjct: 726 EFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFID 785
Query: 133 CCITLYA-------LTSAFR 145
A + ++F+
Sbjct: 786 FMSRETADTDTADQVMASFK 805
Score = 30.6 bits (68), Expect = 0.23
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
F DR ++G + ++ + L + + E R+M + D + G +TF+ F
Sbjct: 727 FRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIM-SIVDPNRMGVVTFQAFID 785
Query: 67 LWKYVT----DWQNCFRSFDR--DNSGNIDKSELSAALT 99
T SF + I EL L
Sbjct: 786 FMSRETADTDTADQVMASFKILAGDKNYITVDELRRELP 824
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 43.0 bits (102), Expect = 2e-06
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 1 MPSREFLWNIFQGVDRDR--SGFISADELQHALSN-GTWTPFNPETVRLMIGMFDKHNRG 57
M S E + F+ IS +EL+ + G T+ MI DK+ G
Sbjct: 1 MKSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDG 60
Query: 58 SITFEDF 64
++FE+F
Sbjct: 61 EVSFEEF 67
Score = 39.9 bits (94), Expect = 2e-05
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 76 NCFRSFDRD--NSGNIDKSELSAALTTFGYRLSDRM--IGTMLKKFDRFGRGTILFDDFI 131
F F + I K EL + T G L M + M+++ D+ G G + F++F+
Sbjct: 9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFL 68
Query: 132 Q 132
Sbjct: 69 V 69
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 44.8 bits (106), Expect = 2e-06
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 49 GMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDR 108
G D I ++ F F FD + G I+ SE AL+ D
Sbjct: 41 GQLDAAGFQKI-YKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDE 99
Query: 109 MIGTMLKKFDRFGRGTILFDDFIQCCITLYALTSA------------------FRSYDTD 150
+ K +D G I ++ + +Y + F D +
Sbjct: 100 KLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKN 159
Query: 151 QDGVITIHYEQFLDMV 166
DG +T ++F +
Sbjct: 160 ADGKLT--LQEFQEGS 173
Score = 40.2 bits (94), Expect = 9e-05
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 75 QNCFRSF-DRDNSGNIDKSELSAALTTFGYRLSDRMIGT-MLKKFDRFGRGTILFDDFIQ 132
Q ++ F SG +D + F T + FD G I F +FIQ
Sbjct: 28 QQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQ 87
Query: 133 CCITLYALTS------AFRSYDTDQDGVITIHYEQFLDMVFSL 169
T AF+ YD D DG IT + LD+V ++
Sbjct: 88 ALSVTSRGTLDEKLRWAFKLYDLDNDGYIT--RNEMLDIVDAI 128
Score = 36.4 bits (84), Expect = 0.002
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 19/145 (13%)
Query: 5 EFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+F +F D ++ G I E ALS + + E +R ++D N G IT +
Sbjct: 63 KFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLD-EKLRWAFKLYDLDNDGYITRNEM 121
Query: 65 GALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGT 124
+ ++ +++ ++ + + D+ G
Sbjct: 122 LDIVD------AIYQMVGNTVELPEEENTP------------EKRVDRIFAMMDKNADGK 163
Query: 125 ILFDDFIQCCITLYALTSAFRSYDT 149
+ +F + ++ A YD
Sbjct: 164 LTLQEFQEGSKADPSIVQALSLYDG 188
Score = 32.9 bits (75), Expect = 0.029
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHAL-------SNGTWTPFNPET----VRLMIG 49
E L F+ D D G+I+ +E+ + N P T V +
Sbjct: 95 GTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFA 154
Query: 50 MFDKHNRGSITFEDF 64
M DK+ G +T ++F
Sbjct: 155 MMDKNADGKLTLQEF 169
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 43.6 bits (103), Expect = 6e-06
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 14 VDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTD 73
V+ + +++ NP R+ + S++FEDF L +D
Sbjct: 37 VESSLRAQVPFEQILSLPELK----ANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSD 92
Query: 74 WQN-------CFRSFDRDNSGNIDKSELSAALTTF-----GYRLSDRMIGT----MLKKF 117
FR FD D+ G +++ +LS + RLS + +L++
Sbjct: 93 TATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEES 152
Query: 118 DRFGRGTILFDDFIQCC 134
D GTI +F
Sbjct: 153 DIDRDGTINLSEFQHVI 169
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 69 KYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFD 128
++ RS + + ++ + +R+ + ++ F+
Sbjct: 25 RFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVF---STSPAKDSLSFE 81
Query: 129 DFIQCCITLYALTS-------AFRSYDTDQDGVITIHYEQFLDMVFSL 169
DF+ + AFR +D D DG + E +V L
Sbjct: 82 DFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLN--REDLSRLVNCL 127
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 10 IFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVRL----MIGMFDKHNRGSITF 61
F+ D D G ++ ++L ++ G T + ++ ++ D G+I
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 62 EDF 64
+F
Sbjct: 163 SEF 165
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 42.4 bits (100), Expect = 6e-06
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
R +F D+ SG ++ + + L + + + + D G +T E+
Sbjct: 13 RLKYRQLFNSHDKTMSGHLTGPQARTILMQ---SSLPQAQLASIWNLSDIDQDGKLTAEE 69
Query: 64 F 64
F
Sbjct: 70 F 70
Score = 33.6 bits (77), Expect = 0.007
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
++ F S D+ SG++ + L L + ++ D G + ++FI
Sbjct: 16 YRQLFNSHDKTMSGHLTGPQARTILMQ--SSLPQAQLASIWNLSDIDQDGKLTAEEFILA 73
Query: 134 C 134
Sbjct: 74 M 74
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 43.3 bits (102), Expect = 8e-06
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 14 VDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF-GALWKYVT 72
V+ + +++ NP R+ + S++FEDF L +
Sbjct: 68 VESSLRAQVPFEQILSLPELK----ANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSD 123
Query: 73 DW------QNCFRSFDRDNSGNIDKSELSAALT-----TFGYRLSD----RMIGTMLKKF 117
FR FD D+ G +++ +LS + RLS ++I +L++
Sbjct: 124 TATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEES 183
Query: 118 DRFGRGTILFDDFIQCC 134
D GTI +F
Sbjct: 184 DIDRDGTINLSEFQHVI 200
Score = 36.0 bits (83), Expect = 0.002
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 12/97 (12%)
Query: 80 SFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITLYA 139
S + + ++ + +R+ + ++ F+DF+
Sbjct: 67 SVESSLRAQVPFEQILSLPELKANPFKERICRVF---STSPAKDSLSFEDFLDLLSVFSD 123
Query: 140 LTS-------AFRSYDTDQDGVITIHYEQFLDMVFSL 169
+ AFR +D D DG + E +V L
Sbjct: 124 TATPDIKSHYAFRIFDFDDDGTLN--REDLSRLVNCL 158
Score = 35.6 bits (82), Expect = 0.004
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 10 IFQGVDRDRSGFISADELQHALSN----GTWTPFNPETVRL----MIGMFDKHNRGSITF 61
F+ D D G ++ ++L ++ G T + ++ ++ D G+I
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 62 EDF 64
+F
Sbjct: 194 SEF 196
Score = 28.3 bits (63), Expect = 1.2
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 10 IFQGVDRDRS-GFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALW 68
I + + +S ++ LS + T +FD + G++ ED L
Sbjct: 96 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV 155
Query: 69 KYVTDWQNC---------------FRSFDRDNSGNIDKSELSAALT 99
+T D D G I+ SE ++
Sbjct: 156 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 41.2 bits (97), Expect = 1e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+ IF D+D GF+S E++ T + + + D + G ++ +
Sbjct: 9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLK---TGLPSTLLAHIWSLCDTKDCGKLSKDQ 65
Query: 64 F 64
F
Sbjct: 66 F 66
Score = 32.8 bits (75), Expect = 0.011
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
+ F D+D G + E+ L ++ + D G + D F
Sbjct: 12 YDEIFLKTDKDMDGFVSGLEVREIFLK--TGLPSTLLAHIWSLCDTKDCGKLSKDQFALA 69
Query: 134 C 134
Sbjct: 70 F 70
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 40.5 bits (95), Expect = 2e-05
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
R++ N F+ + D +GFI + + + + + + D G++T ++
Sbjct: 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTK---SKLPILELSHIWELSDFDKDGALTLDE 64
Query: 64 F 64
F
Sbjct: 65 F 65
Score = 32.8 bits (75), Expect = 0.011
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 74 WQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQC 133
+ N F++ D +G I S T L + + + D G + D+F
Sbjct: 11 YVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAA 68
Query: 134 C 134
Sbjct: 69 F 69
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 40.9 bits (96), Expect = 2e-05
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
RE+ N F+ + D S FIS ++ + + + + + + D G++T +
Sbjct: 21 REYYVNQFRSLQPDPSSFISGSVAKNFFTK---SKLSIPELSYIWELSDADCDGALTLPE 77
Query: 64 F 64
F
Sbjct: 78 F 78
Score = 29.3 bits (66), Expect = 0.29
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134
N FRS D S I S T +LS + + + D G + +F
Sbjct: 25 VNQFRSLQPDPSSFISGSVAKNFFTK--SKLSIPELSYIWELSDADCDGALTLPEFCAAF 82
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 40.2 bits (94), Expect = 3e-05
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
++ V+ +G + A + L + + + + D +G ++ ++
Sbjct: 10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKK---SGLPDLILGKIWDLADTDGKGVLSKQE 66
Query: 64 FGALWKYVTDWQN 76
F + V QN
Sbjct: 67 FFVALRLVACAQN 79
Score = 34.8 bits (80), Expect = 0.003
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 75 QNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCC 134
+ +R + N+G + + +A L G L D ++G + D G+G + +F
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 41.1 bits (97), Expect = 7e-05
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 4/64 (6%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
P + N + D S I+ + L G P T + G
Sbjct: 378 KPVHTTILNPHIHLMGDESACIAYIRITQYLDAGG----IPRTAQSEETRVWHRRDGKWQ 433
Query: 61 FEDF 64
F
Sbjct: 434 IVHF 437
Score = 31.1 bits (71), Expect = 0.18
Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 21/127 (16%)
Query: 11 FQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA---L 67
Q ++ +G E + + T F PE + ++ D F F
Sbjct: 325 EQLIEAISNGDF---ESYTKMCDPGMTAFEPEALGNLVEGLD--------FHRFYFENLW 373
Query: 68 WKYVTDWQ----NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRG 123
+ N D S I ++ L G R + + G
Sbjct: 374 SRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGG---IPRTAQSEETRVWHRRDG 430
Query: 124 TILFDDF 130
F
Sbjct: 431 KWQIVHF 437
Score = 28.0 bits (63), Expect = 1.6
Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 78 FRSFDRDNSGNID--KSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135
+ + ++G+ + +T F ++ + F RF + +
Sbjct: 325 EQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGL--DFHRFYFENLWSRNSKPVHT 382
Query: 136 TLYALTSAFRSYDTDQDGVITI 157
T+ D+ I
Sbjct: 383 TILN---PHIHLMGDESACIAY 401
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 39.2 bits (91), Expect = 1e-04
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 19/98 (19%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSIT 60
M +E + F+ D D + + EL A+++ + ++
Sbjct: 64 MSPQELQLHYFKMHDYDGNNLLDGLELSTAITH-------------VHKEEGSEQAPLMS 110
Query: 61 FEDFGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAAL 98
++ + V R D++N G ID +E + +L
Sbjct: 111 EDELINIIDGV------LRDDDKNNDGYIDYAEFAKSL 142
Score = 38.8 bits (90), Expect = 2e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCITL 137
F+ D D + +D ELS A+ T + K + + ++ +D + I
Sbjct: 74 FKMHDYDGNNLLDGLELSTAI-------------THVHKEEGSEQAPLMSEDELINII-- 118
Query: 138 YALTSAFRSYDTDQDGVITIHYEQFLDMV 166
R D + DG I Y +F +
Sbjct: 119 ---DGVLRDDDKNNDGYID--YAEFAKSL 142
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 39.1 bits (90), Expect = 3e-04
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
+ + + D+++ ++ EL+ L + R + D S+ E+
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELN-IQVDDGYARKIFRECDHSQTDSLEDEEIET 71
Query: 67 LWKYVT 72
+K +T
Sbjct: 72 FYKMLT 77
Score = 33.7 bits (76), Expect = 0.023
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 107 DRMIGTMLKKFDRFGRGTILFDDFIQCC------ITLYALTSAFRSYDTDQDGVITIHYE 160
I + L+K D+ + F + + FR D Q + E
Sbjct: 10 QHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLE--DE 67
Query: 161 QFLDMVFSLK 170
+ L
Sbjct: 68 EIETFYKMLT 77
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 33.6 bits (77), Expect = 0.006
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
+ IF + +GF+S D+++ L N + + + + D + G + ++
Sbjct: 14 KAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSK---LPVDILGRVWELSDIDHDGMLDRDE 69
Query: 64 FGALWKYVTDWQN 76
F V
Sbjct: 70 FAVAMFLVYCALE 82
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 34.3 bits (78), Expect = 0.010
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 51 FDKHNRGSITFEDFGALWKYVTD------WQNCFRSFDRDNSGNIDKSELSAALT----- 99
+ +T ++ ++ +TD + F D++ G + E+ +
Sbjct: 71 KRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASA 130
Query: 100 ---TFGYRLSDRMIGTMLKKFDRFGRGTILFDDF 130
+ +D ++++ D G I +D
Sbjct: 131 NKLSKIKERADEYTALIMEELDPTNLGYIEMEDL 164
Score = 30.4 bits (68), Expect = 0.21
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 10 IFQGVDRDRSGFISADELQHAL-------SNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
F VD++ G ++A+E++ + E L++ D N G I E
Sbjct: 103 FFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEME 162
Query: 63 DFGAL 67
D AL
Sbjct: 163 DLEAL 167
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 32.9 bits (75), Expect = 0.017
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 4 REFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFED 63
R F + SGFI+ D+ ++ + + + + D +N G + +
Sbjct: 32 RAKHDQQFHSLK-PISGFITGDQARNFFFQ---SGLPQPVLAQIWALADMNNDGRMDQVE 87
Query: 64 F 64
F
Sbjct: 88 F 88
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.4 bits (71), Expect = 0.042
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 16/73 (21%)
Query: 78 FRSFDRDNSGNIDKSELSAALTTFGYRLSD----------------RMIGTMLKKFDRFG 121
F D ++ G +D+ EL A T ++ D RM ++K D
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 122 RGTILFDDFIQCC 134
+ ++F+
Sbjct: 86 DRLVTLEEFLAST 98
Score = 24.9 bits (54), Expect = 9.9
Identities = 9/84 (10%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 10 IFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWK 69
F D + G + EL+ + + + ++ + E+ + +
Sbjct: 25 FFILHDINSDGVLDEQELEALFTK---------ELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 70 YVTDWQNCFRSFDRDNSGNIDKSE 93
+V ++ D + + E
Sbjct: 76 HV------MKNVDTNQDRLVTLEE 93
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.1 bits (70), Expect = 0.10
Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITF 61
+ IF + +G I+ + + + + + + D G +
Sbjct: 48 KDKPTYDEIFYTLS-PVNGKITGANAKKEMVK---SKLPNTVLGKIWKLADVDKDGLLDD 103
Query: 62 EDFGALWKYVTDWQN 76
E+F +
Sbjct: 104 EEFALANHLIKVKLE 118
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 30.1 bits (68), Expect = 0.12
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 80 SFDRDNSGNIDKSELSAALTT-FGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
S + N + + +L L T + + K+ D G + F +F+
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFL 72
Score = 25.5 bits (56), Expect = 4.6
Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDK 53
M + + +++ + + + D+L+ L + + + D
Sbjct: 1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDI 60
Query: 54 HNRGSITFEDFGALWKYVTDWQNCFRSFDRDN 85
+ G++ F++F L + + ++
Sbjct: 61 NTDGAVNFQEFLILVIKMG--VAAHKKSHEES 90
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.4 bits (66), Expect = 0.22
Identities = 9/89 (10%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADELQHALSNG----TWTPFNPETVRLMIG 49
M + + + F ++ EL+ L+ + + ++
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 50 MFDKHNRGSITFEDFGALWKYVTDWQNCF 78
D + + F+++ + N F
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEF 89
Score = 26.3 bits (58), Expect = 2.3
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 80 SFDRDNSGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
S + ++KSEL LT G R + ++ D + F ++
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 76
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 29.1 bits (65), Expect = 0.27
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADELQHALSNG----TWTPFNPETVRLMIG 49
M S + + + F ++ EL+ L+ + + ++
Sbjct: 4 MASPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMS 63
Query: 50 MFDKHNRGSITFEDFGALWKYVTDWQNCF 78
D + + F+++ + N F
Sbjct: 64 NLDSNRDNEVDFQEYCVFLSSIAMMSNEF 92
Score = 27.9 bits (62), Expect = 0.88
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 76 NCFRSF--DRDNSGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFD 128
+ F + + ++KSEL LT G R + ++ D + F
Sbjct: 17 STFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 76
Query: 129 DFI 131
++
Sbjct: 77 EYC 79
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 29.1 bits (65), Expect = 0.29
Identities = 9/89 (10%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADELQHAL----SNGTWTPFNPETVRLMIG 49
M + + + F ++ EL+ L + + + ++
Sbjct: 13 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 72
Query: 50 MFDKHNRGSITFEDFGALWKYVTDWQNCF 78
D + + F+++ + N F
Sbjct: 73 NLDSNRDNEVDFQEYCVFLSCIAMMCNEF 101
Score = 28.0 bits (62), Expect = 0.76
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 76 NCFRSF--DRDNSGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFD 128
+ F + + ++KSEL LT G R + ++ D + F
Sbjct: 26 STFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 85
Query: 129 DFI 131
++
Sbjct: 86 EYC 88
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 28.6 bits (64), Expect = 0.41
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 9 NIFQGVDRDRSGFISADELQHAL----SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
F D+ G+++ ++L+ + +P V ++ D+ G + F+ F
Sbjct: 13 FTFHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSF 71
Query: 65 GALWKYVTDWQNCF 78
+L +T N +
Sbjct: 72 FSLIAGLTIACNDY 85
Score = 26.3 bits (58), Expect = 2.9
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 28/94 (29%)
Query: 76 NCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRGTILFDDFIQCCI 135
F F D G + K +L + F F++
Sbjct: 13 FTFHKFAGD-KGYLTKEDLRVLMEK-------------------------EFPGFLENQK 46
Query: 136 TLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
A+ + D +DG + ++ F ++ L
Sbjct: 47 DPLAVDKIMKDLDQCRDGKVG--FQSFFSLIAGL 78
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 29.3 bits (65), Expect = 0.52
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 6 FLWNIFQGVDRDRSGFISADELQHA---LSNGTWTPFNPETVRLMIGMFDKHNRGSITFE 62
+L N++ D R+G I + L + R + G
Sbjct: 136 WLLNVY---DTGRTGRIRVLSFKTGIISLCKAH----LEDKYRYLFKQVASST-GFCDQR 187
Query: 63 DFGAL 67
G L
Sbjct: 188 RLGLL 192
Score = 28.9 bits (64), Expect = 0.78
Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 34/147 (23%)
Query: 7 LWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGA 66
L I+ ++++ + ++ N ++ ++D G I F
Sbjct: 109 LTTIYDRLEQEHNNLVNVPLCVDMCLN------------WLLNVYDTGRTGRIRVLSFKT 156
Query: 67 LW------KYVTDWQNCFRSFDRDNSGNIDKSELSAALT-------------TFGYRLSD 107
++ F+ ++G D+ L L +FG +
Sbjct: 157 GIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIE 215
Query: 108 RMIGTMLKKFDRFGRGTILFDDFIQCC 134
+ + + + + I F+
Sbjct: 216 PSVRSCFQFAN--NKPEIEAALFLDWM 240
Score = 26.2 bits (57), Expect = 6.8
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 21/107 (19%)
Query: 83 RDNSGNIDKSELSAALTTFGYRL-------------SDRMIGTMLKKFDRFGRGTILFDD 129
+ N +D ++ LTT RL D + +L +D G I
Sbjct: 94 KQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLS 153
Query: 130 FIQCCITLYA------LTSAFRSYDTDQDGVIT-IHYEQFLDMVFSL 169
F I+L F+ G L +
Sbjct: 154 FKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQI 199
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 0.65
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 22/74 (29%)
Query: 3 SREFLWNIFQGVDRDRSGFISAD--------ELQHALSNGTWTPFNPETVRLMIGMF-DK 53
SR R+GF+ A + AL G P M DK
Sbjct: 1167 SRPA--------TTTRNGFMEAQGAGIQIIMQADLALKMG--VPIYGIVA--MAATATDK 1214
Query: 54 HNRGSITFEDFGAL 67
R S+ G L
Sbjct: 1215 IGR-SVPAPGKGIL 1227
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 27.4 bits (61), Expect = 0.89
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDN 85
LQ LS+ + + V ++ D++ G + F++F L +T C F ++
Sbjct: 37 LQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT--VACNNFFWENS 93
Score = 24.8 bits (54), Expect = 8.5
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 127 FDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
F+ A+ + D + DG + +++F+ +V +L
Sbjct: 41 LSSFLDVQKDADAVDKIMKELDENGDG--EVDFQEFVVLVAAL 81
Score = 24.8 bits (54), Expect = 9.9
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 80 SFDRDNSGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
S + + K EL L T + + ++K+ D G G + F +F+
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.0
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 65/213 (30%)
Query: 2 PSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETV-RL-------------- 46
+ +FL + + R S Q F V RL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 47 ---------MIGMFDKH--------NRGSITFEDFGALWKYVTDWQNCFRSFDRDNS--- 86
++G K + DF W + ++ + +
Sbjct: 149 PAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFW--LN-----LKNCNSPETVLE 200
Query: 87 ------GNIDKSELSAALTTFGYRLSDRMIGTMLKKF---DRFGRGTILFDD-------- 129
ID + S + + +L I L++ + ++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 130 -F-IQCCITLYALTSAFRSYDTDQDGVITIHYE 160
F + C I L LT+ F+ T H
Sbjct: 261 AFNLSCKI-L--LTTRFKQVTDFLSAATTTHIS 290
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.5 bits (61), Expect = 1.1
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCF 78
L L + + E ++ ++G D+++ + F+++ +T N F
Sbjct: 39 LHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMSNDF 90
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.5 bits (61), Expect = 1.1
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADEL----QHALSNGTWTPFNPETVRLMIG 49
MPS+ + L +F +S EL L++ + +P V ++
Sbjct: 1 MPSKLEGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMN 60
Query: 50 MFDKHNRGSITFEDFGALWKYVTDWQNCF 78
D + + F +F L +T N F
Sbjct: 61 DLDSNKDNEVDFNEFVVLVAALTVACNDF 89
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 28.6 bits (63), Expect = 1.2
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 64 FGALWKYVTDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRG 123
F + + F+ ++ N K + A + Y L D + +++
Sbjct: 207 FSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGMVWA 266
Query: 124 --TILFDDFIQCCITLYALTSAFRSYDTDQDG---------VITIHYEQFLD 164
D + + + S DG +T HY + L
Sbjct: 267 CKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAHGTVTRHYYKHLK 318
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 27.1 bits (60), Expect = 1.3
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 11 FQGVDRDRSGFISADELQHAL----SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+ IS + L ++ N + +I D ++ G I+F+++
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEY 77
Score = 26.3 bits (58), Expect = 2.9
Identities = 5/43 (11%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 127 FDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
+ + A ++ D + DG I+ ++++ ++ +
Sbjct: 44 LNHMLSDTGNRKAADKLIQNLDANHDGRIS--FDEYWTLIGGI 84
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 1.5
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 8/56 (14%)
Query: 1 MPSREFLWNIFQGVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDKHNR 56
+P E + + + + N T ++ + + F K
Sbjct: 178 LPPNE--------ILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAE 225
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 26.6 bits (59), Expect = 1.6
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 1 MPSR-----EFLWNIFQ--GVDRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMFD 52
M + + F +S EL+ + ++ ++ D
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLD 60
Query: 53 KHNRGSITFEDFGALWKYVTDWQNCF 78
K++ I F+++ + N F
Sbjct: 61 KNSDQEIDFKEYSVFLTMLCMAYNDF 86
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand
binding protein; 1.78A {Synechocystis SP} SCOP:
a.118.1.22 a.261.1.1
Length = 233
Score = 27.9 bits (61), Expect = 1.6
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 22 ISADELQHALSNGTWTPFNPETVRLMIGM--FDKHNRGSITFEDFGALWKYVTDWQNCFR 79
I LQ AL + + + T + + R + F +
Sbjct: 91 IDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTE--------------VE 136
Query: 80 SFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFG 121
F + I+ + FG+ + R+ K+F +
Sbjct: 137 KFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTKLW 178
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.7 bits (59), Expect = 1.9
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 13/90 (14%)
Query: 1 MPSR-----EFLWNIFQ---GVDRDRSGFISADELQHAL----SNGTWTPFNPETVRLMI 48
M + FQ G D + EL+ L + T T F +
Sbjct: 1 MARPLEQAVAAIVCTFQEYAGRCGD-KYKLCQAELKELLQKELATWTPTEFRECDYNKFM 59
Query: 49 GMFDKHNRGSITFEDFGALWKYVTDWQNCF 78
+ D + + F ++ + + + +
Sbjct: 60 SVLDTNKDCEVDFVEYVRSLACLCLYCHEY 89
Score = 25.6 bits (56), Expect = 5.3
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 127 FDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
+ DT++D + + +++ + L
Sbjct: 42 LATWTPTEFRECDYNKFMSVLDTNKDCEVD--FVEYVRSLACL 82
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 26.7 bits (59), Expect = 2.1
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRD 84
L L+N + + + D + + F++F +L + ++
Sbjct: 40 LTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIAL--KAAHYHTHKE 95
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 26.7 bits (59), Expect = 2.1
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+ L+ T +P + M+ D + G + F++F
Sbjct: 41 MNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEF 78
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 26.3 bits (58), Expect = 2.5
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 27 LQHALSNGTWTPFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCF 78
+ + LS+ E V ++ D + G F++F A +T + F
Sbjct: 37 INNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTACHEF 88
>3rmr_A ATR1, avirulence protein; effector, RPP1-recognized,
alpha-helical, W-motif, seahorse, RPP1, R-protein,
protein binding; 2.30A {Hyaloperonospora parasitica}
Length = 260
Score = 27.1 bits (59), Expect = 2.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 38 PFNPETVRLMIGMFDKHNRGSITFEDFGALWKYVTDWQNCFRSFDRDN 85
PF P V +I D+H R S+ D + K V W+ + +RD+
Sbjct: 13 PFGPSAVEALIETIDRHGRVSLN--DEAKMKKVVRTWK---KLIERDD 55
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 26.6 bits (58), Expect = 4.5
Identities = 22/164 (13%), Positives = 37/164 (22%), Gaps = 34/164 (20%)
Query: 35 TWTPFNPETVRLMIGMFDKHNRGSITFED-----------------------FGALWKYV 71
T N + R I D+ F
Sbjct: 154 VVTDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTIS 213
Query: 72 TDWQNCFRSFDRDNSGNIDKSELSAALTTFGYRLSDRMIGTMLKKFDRFGRG--TILFDD 129
+ F+ + K + +AA + Y L D ++ M+K D
Sbjct: 214 KQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDV 273
Query: 130 FIQCCITLYALTSAFRSYDTDQD---------GVITIHYEQFLD 164
+ + + S G + HY Q L
Sbjct: 274 MSDMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLK 317
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 25.0 bits (55), Expect = 5.1
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 15 DRDRSGFISADELQHAL-SNGTWTPFNPETVRLMIGMFDKHNRGSITFEDF 64
+S +EL+ + + P T+ + DK+ G ++FE+F
Sbjct: 19 KEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEF 69
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD,
structural GE riken structural genomics/proteomics
initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP:
d.166.1.5
Length = 186
Score = 26.1 bits (57), Expect = 6.4
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 13 GVDRDRSGFISADELQHALSNGTWTPFNPETVRLMIGMFDK 53
GV R G+ E+ L W+ + + K
Sbjct: 21 GVRLTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDPK 61
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 26.1 bits (56), Expect = 7.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 125 ILFDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFL 163
+LFD+ I R D ++ + Q +
Sbjct: 1103 VLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLV 1141
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 26.0 bits (58), Expect = 7.5
Identities = 4/51 (7%), Positives = 18/51 (35%), Gaps = 16/51 (31%)
Query: 13 GVDRDRSGFISADE---------LQHALSNGTWTPFNPETVRLMIGMFDKH 54
D++ ++ A + A++ + + ++ +F ++
Sbjct: 294 EQPDDKNDWVVAHDLNPEKARILAMVAMTKTQ----DSKELQ---RIFWEY 337
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 25.4 bits (55), Expect = 7.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 78 FRSFDRDNSGNIDKSELSAAL 98
+ D D G I+ E +
Sbjct: 21 HKQMDDDKDGGIEVEESDEFI 41
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 24.8 bits (54), Expect = 8.6
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 127 FDDFIQCCITLYALTSAFRSYDTDQDGVITIHYEQFLDMVFSL 169
F+Q A+ + D + D + + +F+ V ++
Sbjct: 41 LPGFLQSGKDKDAVDKLLKDLDANGDA--QVDFSEFIVFVAAI 81
Score = 24.8 bits (54), Expect = 8.9
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 80 SFDRDNSGNIDKSELSAALTT-----FGYRLSDRMIGTMLKKFDRFGRGTILFDDFI 131
S ++ + K EL + + +LK D G + F +FI
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFI 75
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 25.6 bits (57), Expect = 9.1
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 8/28 (28%)
Query: 15 DRDRSGFISAD--------ELQHALSNG 34
D++R GF+ A +L+ AL+ G
Sbjct: 242 DKNRDGFVIAGGAGVLVLEDLETALARG 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.446
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,773,353
Number of extensions: 155786
Number of successful extensions: 1983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 544
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)