Query psy17056
Match_columns 251
No_of_seqs 188 out of 1158
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:45:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1.5E-66 3.2E-71 512.4 11.4 205 1-251 190-394 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 1.8E-64 3.9E-69 493.2 16.5 207 1-250 219-427 (821)
3 cd01381 MYSc_type_VII Myosin m 100.0 2.7E-64 5.8E-69 485.7 17.0 208 1-251 120-327 (671)
4 cd01385 MYSc_type_IX Myosin mo 100.0 1.2E-63 2.6E-68 482.6 17.7 208 2-251 132-339 (692)
5 cd01383 MYSc_type_VIII Myosin 100.0 1.3E-63 2.8E-68 480.9 16.7 206 1-251 125-330 (677)
6 cd01380 MYSc_type_V Myosin mot 100.0 1.8E-63 3.9E-68 481.7 17.1 205 2-251 127-331 (691)
7 cd01377 MYSc_type_II Myosin mo 100.0 2.1E-63 4.6E-68 481.3 17.0 204 2-251 136-340 (693)
8 cd01379 MYSc_type_III Myosin m 100.0 1.1E-62 2.5E-67 472.7 19.0 212 2-251 122-334 (653)
9 cd01384 MYSc_type_XI Myosin mo 100.0 2.1E-62 4.6E-67 472.3 16.8 206 2-250 127-332 (674)
10 cd01378 MYSc_type_I Myosin mot 100.0 2.9E-62 6.2E-67 472.2 16.8 204 2-251 124-331 (674)
11 cd01387 MYSc_type_XV Myosin mo 100.0 5.4E-62 1.2E-66 470.1 16.5 207 1-251 122-328 (677)
12 cd00124 MYSc Myosin motor doma 100.0 1.5E-61 3.3E-66 469.2 18.0 207 1-250 121-327 (679)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-61 4.3E-66 468.7 17.0 232 2-251 126-364 (717)
14 smart00242 MYSc Myosin. Large 100.0 2.4E-61 5.2E-66 467.1 17.0 207 1-251 129-335 (677)
15 KOG0164|consensus 100.0 8.1E-61 1.8E-65 443.6 7.2 201 2-250 134-335 (1001)
16 PF00063 Myosin_head: Myosin h 100.0 1.6E-59 3.4E-64 457.8 13.8 204 2-250 125-328 (689)
17 KOG0162|consensus 100.0 8.9E-59 1.9E-63 430.5 11.7 204 1-251 141-348 (1106)
18 KOG0163|consensus 100.0 9E-59 1.9E-63 431.4 9.3 235 1-251 178-418 (1259)
19 cd01386 MYSc_type_XVIII Myosin 100.0 1.2E-57 2.6E-62 443.6 16.8 191 4-241 125-316 (767)
20 KOG0160|consensus 100.0 1.5E-51 3.2E-56 396.9 6.0 204 1-251 130-333 (862)
21 KOG0161|consensus 100.0 1.5E-50 3.3E-55 414.2 6.6 203 2-250 210-413 (1930)
22 KOG4229|consensus 100.0 2.8E-42 6E-47 339.9 4.2 206 3-251 185-391 (1062)
23 cd01379 MYSc_type_III Myosin m 92.8 0.22 4.7E-06 49.2 5.8 120 108-232 233-363 (653)
24 cd01363 Motor_domain Myosin an 86.9 0.67 1.5E-05 38.1 3.2 36 7-42 60-96 (186)
25 cd01380 MYSc_type_V Myosin mot 83.5 1.9 4.2E-05 42.9 5.1 110 118-232 243-360 (691)
26 cd01382 MYSc_type_VI Myosin mo 80.9 2.6 5.7E-05 42.1 5.1 75 101-175 251-336 (717)
27 cd01383 MYSc_type_VIII Myosin 80.4 2.5 5.3E-05 42.0 4.6 109 119-232 243-359 (677)
28 smart00242 MYSc Myosin. Large 80.4 2.6 5.6E-05 41.9 4.8 110 118-232 246-364 (677)
29 cd01378 MYSc_type_I Myosin mot 80.3 2.8 6.1E-05 41.7 5.0 58 118-175 240-304 (674)
30 cd01386 MYSc_type_XVIII Myosin 79.9 3 6.5E-05 42.1 5.1 64 112-175 234-303 (767)
31 cd01377 MYSc_type_II Myosin mo 79.8 3.2 6.9E-05 41.4 5.2 112 116-232 250-369 (693)
32 cd01384 MYSc_type_XI Myosin mo 78.2 3.6 7.7E-05 40.9 5.0 58 118-175 242-310 (674)
33 cd00124 MYSc Myosin motor doma 77.5 3.8 8.1E-05 40.8 4.9 110 118-232 238-357 (679)
34 PTZ00014 myosin-A; Provisional 77.2 3.8 8.2E-05 41.6 4.9 108 119-231 336-456 (821)
35 cd01385 MYSc_type_IX Myosin mo 74.0 5.6 0.00012 39.7 5.1 110 118-232 248-368 (692)
36 COG5022 Myosin heavy chain [Cy 72.8 6.1 0.00013 42.0 5.1 110 120-234 309-425 (1463)
37 cd01387 MYSc_type_XV Myosin mo 72.6 6.6 0.00014 39.1 5.2 110 117-231 237-356 (677)
38 PF00063 Myosin_head: Myosin h 72.5 4.4 9.6E-05 40.3 4.0 56 118-173 241-304 (689)
39 cd01381 MYSc_type_VII Myosin m 71.6 6 0.00013 39.3 4.7 109 119-232 238-356 (671)
40 KOG0163|consensus 66.4 15 0.00033 36.8 6.0 81 103-185 306-398 (1259)
41 PF07499 RuvA_C: RuvA, C-termi 62.8 16 0.00035 22.9 3.8 24 156-179 4-27 (47)
42 PF13443 HTH_26: Cro/C1-type H 58.9 29 0.00063 22.5 4.8 20 207-226 39-58 (63)
43 COG4056 McrC Methyl coenzyme M 57.5 2.4 5.2E-05 34.0 -0.9 30 160-189 86-115 (204)
44 PF12844 HTH_19: Helix-turn-he 54.2 47 0.001 21.6 5.2 56 157-226 3-59 (64)
45 PHA01976 helix-turn-helix prot 49.6 41 0.00089 22.1 4.4 57 157-226 6-62 (67)
46 PF14490 HHH_4: Helix-hairpin- 48.4 57 0.0012 23.5 5.3 63 120-185 14-83 (94)
47 PF08199 E2: Bacteriophage E2- 46.5 1.8 4E-05 25.0 -2.3 8 27-34 8-15 (37)
48 PRK09430 djlA Dna-J like membr 46.2 2E+02 0.0044 25.1 10.1 27 205-231 148-174 (267)
49 PF10440 WIYLD: Ubiquitin-bind 44.1 52 0.0011 22.4 4.1 38 154-192 10-47 (65)
50 PF10075 PCI_Csn8: COP9 signal 42.3 22 0.00047 27.7 2.4 40 210-249 99-138 (143)
51 KOG0164|consensus 41.5 64 0.0014 32.4 5.7 57 117-173 249-311 (1001)
52 PF01476 LysM: LysM domain; I 40.9 59 0.0013 19.2 3.8 39 205-244 3-44 (44)
53 PF01978 TrmB: Sugar-specific 40.1 64 0.0014 21.4 4.2 44 162-230 1-44 (68)
54 COG4103 Uncharacterized protei 39.6 28 0.0006 27.6 2.5 20 208-227 123-142 (148)
55 KOG0161|consensus 39.5 36 0.00077 38.0 4.1 53 120-172 328-388 (1930)
56 smart00027 EH Eps15 homology d 37.4 1.5E+02 0.0033 21.0 6.6 24 155-178 29-52 (96)
57 TIGR03264 met_CoM_red_C methyl 37.4 7.6 0.00016 31.9 -0.9 26 164-189 88-113 (194)
58 PF12728 HTH_17: Helix-turn-he 36.9 32 0.00069 21.4 2.2 24 211-234 4-27 (51)
59 PF08667 BetR: BetR domain; I 33.9 81 0.0018 25.1 4.4 62 156-226 8-69 (147)
60 PF12244 DUF3606: Protein of u 32.9 58 0.0013 21.4 2.9 30 201-230 13-42 (57)
61 TIGR01448 recD_rel helicase, p 31.8 1.5E+02 0.0033 29.8 7.0 97 123-230 152-263 (720)
62 PF02852 Pyr_redox_dim: Pyridi 31.3 53 0.0012 24.0 2.9 19 32-50 50-69 (110)
63 PF13833 EF-hand_8: EF-hand do 31.1 1.1E+02 0.0023 19.0 4.0 24 156-179 8-34 (54)
64 TIGR01764 excise DNA binding d 30.6 53 0.0012 19.6 2.4 22 211-232 4-25 (49)
65 PF02962 CHMI: 5-carboxymethyl 29.5 60 0.0013 25.0 2.9 43 44-86 37-79 (124)
66 PF00376 MerR: MerR family reg 29.0 56 0.0012 19.5 2.2 17 211-227 2-18 (38)
67 PRK10856 cytoskeletal protein 28.9 73 0.0016 28.8 3.8 68 157-231 18-85 (331)
68 PF01381 HTH_3: Helix-turn-hel 28.7 45 0.00098 20.8 1.9 21 205-225 35-55 (55)
69 cd04762 HTH_MerR-trunc Helix-T 28.5 59 0.0013 19.2 2.3 22 211-232 3-24 (49)
70 PF00325 Crp: Bacterial regula 27.7 64 0.0014 18.6 2.1 20 212-231 6-25 (32)
71 PF13309 HTH_22: HTH domain 27.0 58 0.0012 21.8 2.2 21 209-229 43-63 (64)
72 PF01876 RNase_P_p30: RNase P 26.7 2E+02 0.0043 22.4 5.6 56 171-231 91-149 (150)
73 PHA02591 hypothetical protein; 26.6 66 0.0014 22.8 2.4 20 211-230 62-81 (83)
74 PF13413 HTH_25: Helix-turn-he 26.1 53 0.0011 21.9 1.9 56 160-225 4-62 (62)
75 PF01152 Bac_globin: Bacterial 25.7 1.6E+02 0.0035 21.7 4.7 27 156-182 87-113 (120)
76 PF02954 HTH_8: Bacterial regu 25.6 73 0.0016 19.2 2.3 19 211-229 21-39 (42)
77 cd04761 HTH_MerR-SF Helix-Turn 25.4 67 0.0015 19.4 2.2 20 211-230 3-22 (49)
78 PF05952 ComX: Bacillus compet 25.2 62 0.0014 21.4 2.0 25 205-229 10-38 (57)
79 PF04458 DUF505: Protein of un 25.1 41 0.00088 32.8 1.5 49 174-231 519-567 (591)
80 cd00052 EH Eps15 homology doma 24.2 1.4E+02 0.003 19.0 3.7 23 156-178 19-41 (67)
81 cd07923 Gallate_dioxygenase_C 24.0 3E+02 0.0064 20.2 5.7 59 153-230 22-82 (94)
82 PF05172 Nup35_RRM: Nup53/35/4 23.9 63 0.0014 23.9 2.0 33 7-39 18-63 (100)
83 TIGR02899 spore_safA spore coa 23.8 70 0.0015 18.5 2.0 36 209-244 5-43 (44)
84 PF05099 TerB: Tellurite resis 22.3 78 0.0017 24.0 2.5 47 167-227 91-137 (140)
85 PRK15031 5-carboxymethyl-2-hyd 22.2 1.3E+02 0.0029 23.1 3.7 42 45-86 39-80 (126)
86 PRK09706 transcriptional repre 22.0 2.2E+02 0.0047 21.7 4.9 58 157-227 9-66 (135)
87 PF00356 LacI: Bacterial regul 21.6 1E+02 0.0022 19.2 2.4 22 211-232 2-23 (46)
88 PF10049 DUF2283: Protein of u 21.4 1.4E+02 0.0031 18.8 3.1 21 29-49 27-47 (50)
89 PF03683 UPF0175: Uncharacteri 20.8 2.9E+02 0.0063 19.0 5.9 53 162-235 7-61 (76)
90 COG4868 Uncharacterized protei 20.6 3.3E+02 0.007 24.9 6.1 65 154-231 323-390 (493)
91 PF01465 GRIP: GRIP domain; I 20.3 85 0.0018 19.6 1.8 18 169-186 21-38 (46)
92 smart00530 HTH_XRE Helix-turn- 20.3 74 0.0016 18.6 1.6 19 207-225 38-56 (56)
93 PF09048 Cro: Cro; InterPro: 20.2 97 0.0021 20.7 2.1 22 211-232 15-36 (59)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-66 Score=512.37 Aligned_cols=205 Identities=34% Similarity=0.617 Sum_probs=193.8
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++.++++||||||||||||+|||||||||||++|.||.+|.|+||+|.+|||||||||+|+.+|||||||||||+|.++
T Consensus 190 iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~ 269 (1463)
T COG5022 190 IEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPE 269 (1463)
T ss_pred HHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
..++.+++.++.+|.||++++|..++|+||..+|. .++.
T Consensus 270 ~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk-----------------------------------------~t~~ 308 (1463)
T COG5022 270 ELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFK-----------------------------------------ITLD 308 (1463)
T ss_pred HHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHH-----------------------------------------HHHH
Confidence 88888888999999999999999999998876665 8999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+.+++..||+|||||||||||+|..+. ++...+.+.+.++.+|.|||||++.|.++|+.|.|+++||+
T Consensus 309 AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r-----~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~ 383 (1463)
T COG5022 309 ALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDR-----NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEW 383 (1463)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhhcceeeeecc-----cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceE
Confidence 9999999999999999999999999999998754 44567889999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
|.+|++..||+
T Consensus 384 i~~~~n~~QA~ 394 (1463)
T COG5022 384 IVVPLNLEQAL 394 (1463)
T ss_pred EEecCCHHHHH
Confidence 99999999985
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.8e-64 Score=493.19 Aligned_cols=207 Identities=34% Similarity=0.554 Sum_probs=187.6
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++.++.|||||||||||||+|||||||||||++|+|+.+|.|+||+|++||||||||++|++||||||||||||+|+++
T Consensus 219 ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~ 298 (821)
T PTZ00014 219 IQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGAND 298 (821)
T ss_pred HHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++.+|+||++ +|..+++++|..+| ..+++
T Consensus 299 ~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f-----------------------------------------~~~~~ 336 (821)
T PTZ00014 299 EMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDF-----------------------------------------EEVME 336 (821)
T ss_pred HHHHHcCCCChHhccccCC-CCccCCCCchHHHH-----------------------------------------HHHHH
Confidence 9999999999999999995 56667777765554 49999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecC--HHHHHHHHhhcCCCHHHHHHhHhhceEEcCC
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRN--TEVVVLISELLRVKKETLLAALTAKHARASD 238 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~--~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~g 238 (251)
||++|||+++|+..||+|||||||||||+|...+... .++++.+.+ .+.++.+|.||||++++|.++||+|++.++|
T Consensus 337 A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~-~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 415 (821)
T PTZ00014 337 SFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGG-LTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGN 415 (821)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCC-CCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCC
Confidence 9999999999999999999999999999998754321 233445544 5699999999999999999999999999999
Q ss_pred eEEEEeCCcccC
Q psy17056 239 ETLVINYRLPEV 250 (251)
Q Consensus 239 e~i~~~~~~~eA 250 (251)
|.+.+|++++||
T Consensus 416 e~i~~~~~~~qA 427 (821)
T PTZ00014 416 QKIEGPWSKDES 427 (821)
T ss_pred eeEecCCCHHHH
Confidence 999999999987
No 3
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.7e-64 Score=485.70 Aligned_cols=208 Identities=35% Similarity=0.613 Sum_probs=193.5
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++.++.|||||||||||||++||||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++
T Consensus 120 i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~ 199 (671)
T cd01381 120 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLST 199 (671)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++.+|+||++++|..+++++|..+| ..++.
T Consensus 200 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f-----------------------------------------~~~~~ 238 (671)
T cd01381 200 DEKERLKLGEASDYHYLAQGGCITCEGRDDAKDF-----------------------------------------ADIRS 238 (671)
T ss_pred HHHHHcCCCChhhceeecCCCCccCCCccHHHHH-----------------------------------------HHHHH
Confidence 9999999999999999999888877777765554 49999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+.|||+++|+..||+|||||||||||+|...+.+ ..+.+.+.+++.++.+|.||||++++|.++||+|++.++||+
T Consensus 239 al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~--~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~ 316 (671)
T cd01381 239 AMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVD--NLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGET 316 (671)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCC--CCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCce
Confidence 999999999999999999999999999999876432 245678999999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 317 i~~~~~~~qA~ 327 (671)
T cd01381 317 VVTPLSREQAV 327 (671)
T ss_pred EEecCCHHHHH
Confidence 99999999873
No 4
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.2e-63 Score=482.60 Aligned_cols=208 Identities=59% Similarity=0.866 Sum_probs=191.7
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||.+|+||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 132 ~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~ 211 (692)
T cd01385 132 EQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEE 211 (692)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+|.+++|.+..+|+||+++++...++++|..+ |..+++|
T Consensus 212 ~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~-----------------------------------------f~~~~~a 250 (692)
T cd01385 212 ERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE-----------------------------------------FERLKQA 250 (692)
T ss_pred HHHHhcCCChhcCCeeCCCCCccCCCCCHHHH-----------------------------------------HHHHHHH
Confidence 99999998888999999887765566666554 4499999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|+.|||+++++..||+|||||||||||+|.+.++. ..++.+.+.+++.++.||.||||++++|.++||++++.++||.+
T Consensus 251 l~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~-~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i 329 (692)
T cd01385 251 MEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATY-HRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETL 329 (692)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccCceeeecccC-CCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeE
Confidence 99999999999999999999999999999875432 23566789999999999999999999999999999999999999
Q ss_pred EEeCCcccCC
Q psy17056 242 VINYRLPEVL 251 (251)
Q Consensus 242 ~~~~~~~eA~ 251 (251)
++|++++||.
T Consensus 330 ~~~~~~~qa~ 339 (692)
T cd01385 330 ILPYSLSEAI 339 (692)
T ss_pred EecCCHHHHH
Confidence 9999999883
No 5
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.3e-63 Score=480.94 Aligned_cols=206 Identities=36% Similarity=0.628 Sum_probs=190.9
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
|++.+..|||||||||||||.+|+||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++
T Consensus 125 i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~ 204 (677)
T cd01383 125 IEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPP 204 (677)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++.+|+||++++|..+++++|..+| +.+++
T Consensus 205 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f-----------------------------------------~~~~~ 243 (677)
T cd01383 205 ALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRF-----------------------------------------HTLVE 243 (677)
T ss_pred HHHHHhCCCCHHHCceecCCCcccCCCccHHHHH-----------------------------------------HHHHH
Confidence 9999999999999999999888877777765554 49999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+.|||+++|+..||+|||||||||||+|...++ ++.+.+.+.+.++.+|.||||++++|.++||+|++.++||.
T Consensus 244 al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 244 ALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDN----ENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCC----CcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999987543 33456778889999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 320 ~~~~~~~~qa~ 330 (677)
T cd01383 320 IVQKLTLQQAI 330 (677)
T ss_pred EeecCCHHHHH
Confidence 99999999873
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.8e-63 Score=481.70 Aligned_cols=205 Identities=37% Similarity=0.605 Sum_probs=188.8
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..+||||||||||||.+|+||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 127 ~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~ 206 (691)
T cd01380 127 EEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQ 206 (691)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+|++|+|.++..|+||++++|..+++++|..+ |+.+++|
T Consensus 207 ~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~-----------------------------------------f~~~~~a 245 (691)
T cd01380 207 ELKELHLGHADKFNYLNQGGAPTIEGVDDAED-----------------------------------------FNATVQA 245 (691)
T ss_pred HHHHhCCCCHHHCccccCCCCccCCCCChHHH-----------------------------------------HHHHHHH
Confidence 99999999999999999988877777766555 4499999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|+.|||+++|+.+||+|||||||||||+|...++ +.+....+.+.++.+|.||||++++|.++||+|++.++||.+
T Consensus 246 l~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i 321 (691)
T cd01380 246 LTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN----DSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKI 321 (691)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC----ccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeE
Confidence 9999999999999999999999999999987543 222334567789999999999999999999999999999999
Q ss_pred EEeCCcccCC
Q psy17056 242 VINYRLPEVL 251 (251)
Q Consensus 242 ~~~~~~~eA~ 251 (251)
.+|++++||.
T Consensus 322 ~~~~~~~qA~ 331 (691)
T cd01380 322 VKPLTKEQAI 331 (691)
T ss_pred EecCCHHHHH
Confidence 9999999883
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.1e-63 Score=481.30 Aligned_cols=204 Identities=35% Similarity=0.597 Sum_probs=187.6
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||.+||||||||||++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 136 ~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~ 215 (693)
T cd01377 136 EDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPE 215 (693)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCc-cccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLKKI-ESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~~~-~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+|++|+|.+. .+|+||+++++. .++++|. .+|+.++.
T Consensus 216 ~~~~l~L~~~~~~y~yL~~~~~~-~~~~~d~-----------------------------------------~~f~~~~~ 253 (693)
T cd01377 216 LKSMLLLTGNPNDYRYLSQGELT-IPGVDDA-----------------------------------------EEFKLTDE 253 (693)
T ss_pred HHHHcCCCCchhcCeeeCCCCcc-CCCCcHH-----------------------------------------HHHHHHHH
Confidence 9999999886 899999987653 4555554 44559999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+.|||+++++.+||+|||||||||||+|...+. ++.+.+.+.+.++.+|.||||++++|.++||+|++.++||.
T Consensus 254 al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 329 (693)
T cd01377 254 AFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQR----EEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREW 329 (693)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCC----CCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCee
Confidence 99999999999999999999999999999987532 34567899999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 330 i~~~~~~~~A~ 340 (693)
T cd01377 330 VTKGQNVEQVS 340 (693)
T ss_pred EeeCCCHHHHH
Confidence 99999999873
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.1e-62 Score=472.73 Aligned_cols=212 Identities=30% Similarity=0.551 Sum_probs=190.9
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..+||||||||||||.+|+||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 122 ~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~ 201 (653)
T cd01379 122 QEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEE 201 (653)
T ss_pred HHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH-hhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DR-HSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~-~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++ ++++|.++..|+||+++++..+++++|.. +|+.+|+.+++
T Consensus 202 ~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~-------------------------------------~~~~~f~~~~~ 244 (653)
T cd01379 202 KKLAEYKLPESKTPRYLQNEATRVVQDITSNK-------------------------------------FYKDQFEQIEQ 244 (653)
T ss_pred HHHHhcCCCCccccCccCCCCccccCCCccch-------------------------------------hHHHHHHHHHH
Confidence 76 78999999999999988776566554421 23456889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|+..||+|||||||||||+|...+... ..+.+.+.+++.++.+|.||||+.++|.++||+|++.++||.
T Consensus 245 al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~-~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~ 323 (653)
T cd01379 245 CFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEH-QTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGET 323 (653)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccC-CCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCce
Confidence 9999999999999999999999999999998764321 234567899999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 324 i~~~~~~~qA~ 334 (653)
T cd01379 324 IVRHNTVEKAT 334 (653)
T ss_pred eeecCCHHHHH
Confidence 99999999873
No 9
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.1e-62 Score=472.29 Aligned_cols=206 Identities=33% Similarity=0.571 Sum_probs=186.4
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..+||||||||||||.+|+||||||||++|+|+.+|.|+||+|++||||||||++|++||||||||||||+| +++
T Consensus 127 ~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~ 205 (674)
T cd01384 127 EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPE 205 (674)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+|++|+|.++.+|+||++++|..+++++|..+ |+.+++|
T Consensus 206 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~-----------------------------------------f~~~~~a 244 (674)
T cd01384 206 DVKKYKLGDPKEFHYLNQSNCFELDGVDDAEE-----------------------------------------YLATRRA 244 (674)
T ss_pred HHHHcCCCChHhCccccCCCCccccccchHHH-----------------------------------------HHHHHHH
Confidence 99999999999999999988877777776554 4499999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|+.|||+++|+..||+|||||||||||+|...+.. +........+.+.++.||.||||++++|.++||+|++.++||.+
T Consensus 245 l~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~-~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i 323 (674)
T cd01384 245 MDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEI-DSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVI 323 (674)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCC-CcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceE
Confidence 99999999999999999999999999999865431 11111222446899999999999999999999999999999999
Q ss_pred EEeCCcccC
Q psy17056 242 VINYRLPEV 250 (251)
Q Consensus 242 ~~~~~~~eA 250 (251)
.+|++++||
T Consensus 324 ~~~~~~~~a 332 (674)
T cd01384 324 TKPLDPDSA 332 (674)
T ss_pred EecCCHHHH
Confidence 999999987
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.9e-62 Score=472.22 Aligned_cols=204 Identities=39% Similarity=0.651 Sum_probs=190.3
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||++|+||||||||++|+|+.+|.++||+|++||||||||+.|++||||||||||||+|++++
T Consensus 124 ~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~ 203 (674)
T cd01378 124 KDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQ 203 (674)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+|++|+|.++.+|+||+++++..+++++|..+ |..+++|
T Consensus 204 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~-----------------------------------------f~~~~~a 242 (674)
T cd01378 204 LLRELGLQKPEYYYYLNQSQCYTVDGIDDKKD-----------------------------------------FKETQNA 242 (674)
T ss_pred HHHHhCCCChhhCeeecCCCccCCCCccHHHH-----------------------------------------HHHHHHH
Confidence 99999999999999999988877777766544 4599999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCC---
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASD--- 238 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~g--- 238 (251)
|+.|||+++|+..||+|||||||||||+|...++ +.+.+.+++.++.+|.||||++++|.++||+|++.++|
T Consensus 243 l~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-----~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~ 317 (674)
T cd01378 243 MKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-----GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGR 317 (674)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-----CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCC
Confidence 9999999999999999999999999999987542 23678999999999999999999999999999999999
Q ss_pred -eEEEEeCCcccCC
Q psy17056 239 -ETLVINYRLPEVL 251 (251)
Q Consensus 239 -e~i~~~~~~~eA~ 251 (251)
|.+.+|++++||.
T Consensus 318 ~e~i~~~~~~~~a~ 331 (674)
T cd01378 318 GEVYDVPLNVEQAA 331 (674)
T ss_pred ceeEEecCCHHHHH
Confidence 9999999999873
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=5.4e-62 Score=470.07 Aligned_cols=207 Identities=37% Similarity=0.629 Sum_probs=189.4
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++.+..|||||||||||||++|+||||||||++|+|+ +|.|+||+|++||||||||+.|++||||||||||||+|+++
T Consensus 122 i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~ 200 (677)
T cd01387 122 ITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPA 200 (677)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCH
Confidence 35678899999999999999999999999999999996 79999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++.+|+||+++++..+++.+|.. +|+.+++
T Consensus 201 ~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~-----------------------------------------~f~~~~~ 239 (677)
T cd01387 201 QLRQAFSLQEAETYYYLNQGGNCEIAGKSDAD-----------------------------------------DFRRLLA 239 (677)
T ss_pred HHHHHhcCCCHHhCchhcCCCcccCCCcCHHH-----------------------------------------HHHHHHH
Confidence 99999999999999999988776666665544 4559999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+.|||+++|+..||+|||||||||||+|..... +..+.+.+.+++.++.+|.||||++++|.++||++++.++||.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~--~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~ 317 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRET--DAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREK 317 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccC--CCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCce
Confidence 99999999999999999999999999999987542 1234567889999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 318 i~~~~~~~~a~ 328 (677)
T cd01387 318 IFTPLTVESAV 328 (677)
T ss_pred EeccCCHHHHH
Confidence 99999999883
No 12
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.5e-61 Score=469.25 Aligned_cols=207 Identities=43% Similarity=0.699 Sum_probs=192.1
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
|++.+..|||||||||||||++|+||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++
T Consensus 121 i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~ 200 (679)
T cd00124 121 IEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASP 200 (679)
T ss_pred HHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++..|+||+++++...++.+|..+ |..+++
T Consensus 201 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~-----------------------------------------f~~~~~ 239 (679)
T cd00124 201 EERKKLGLKRPESYRYLNQGGCNDVDGIDDAEE-----------------------------------------FEELKE 239 (679)
T ss_pred HHHHhcCCCCcccCeeeCCCCcccCCCCCHHHH-----------------------------------------HHHHHH
Confidence 999999999999999999988776666666554 459999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++++.+||+|||||||||||+|...+.. ....+.+.+++.++.+|.||||++++|.++||++++.++||.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~ 317 (679)
T cd00124 240 ALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGE--GQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEV 317 (679)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCC--CcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCce
Confidence 999999999999999999999999999999876542 122478999999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+|++++||
T Consensus 318 ~~~~~~~~~a 327 (679)
T cd00124 318 ITIPLTKEEA 327 (679)
T ss_pred EEecCCHHHH
Confidence 9999999987
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2e-61 Score=468.66 Aligned_cols=232 Identities=33% Similarity=0.526 Sum_probs=193.0
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||.+|+||||||||++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 126 ~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~ 205 (717)
T cd01382 126 DDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASED 205 (717)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCC--chHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNV--DEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQ 159 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~--~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~ 159 (251)
+|++|+|.++..|+||+++........ ++..... +. + +-....++...++++|..+|+.++
T Consensus 206 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~--~~-------s--------~~~~~~~~~~~~~~dD~~~f~~~~ 268 (717)
T cd01382 206 IREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQN--RK-------S--------PEHLKKGALKDPLLDDYGDFQRMC 268 (717)
T ss_pred HHHHhcCCChhhCeeecCCccccccccccccccccc--cc-------c--------cccccccccCCCCCcHHHHHHHHH
Confidence 999999999999999997532111000 0000000 00 0 000112344556788999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEE----
Q psy17056 160 QSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHAR---- 235 (251)
Q Consensus 160 ~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~---- 235 (251)
+||++|||+++|+..||+|||||||||||+|...++. ...+.+...+.+.++.+|.||||++++|.++||+|++.
T Consensus 269 ~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~-~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g 347 (717)
T cd01382 269 VALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAG 347 (717)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCC-CCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccc
Confidence 9999999999999999999999999999999875431 12334455678999999999999999999999999998
Q ss_pred -cCCeEEEEeCCcccCC
Q psy17056 236 -ASDETLVINYRLPEVL 251 (251)
Q Consensus 236 -~~ge~i~~~~~~~eA~ 251 (251)
++||.+.+|++++||.
T Consensus 348 ~~~~~~i~~~l~~~qA~ 364 (717)
T cd01382 348 GAKGTVIKVPLKVEQAN 364 (717)
T ss_pred cCCCceEEecCCHHHHH
Confidence 7899999999999873
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2.4e-61 Score=467.10 Aligned_cols=207 Identities=41% Similarity=0.694 Sum_probs=190.4
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
|++.+..|||||||||||||.+|+||||||||++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|+++
T Consensus 129 i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~ 208 (677)
T smart00242 129 VEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASE 208 (677)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+++++|+|.++.+|+||+++++..+++.+|..+ |+.+++
T Consensus 209 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~-----------------------------------------f~~~~~ 247 (677)
T smart00242 209 ELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE-----------------------------------------FKETLN 247 (677)
T ss_pred HHHHhcCCCChhhCceeCCCCCccCCCCCHHHH-----------------------------------------HHHHHH
Confidence 999999999999999999988777777666544 459999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+.|||+++|+.+||+|||||||||||+|...+.+ +....+.+.+.++.+|.||||++++|.++||++++.++||.
T Consensus 248 al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 324 (677)
T smart00242 248 AMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRND---NAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEV 324 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCC---CcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCce
Confidence 999999999999999999999999999999876532 22223889999999999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
+.+|++++||.
T Consensus 325 ~~~~~~~~~a~ 335 (677)
T smart00242 325 ITKPLNVEQAL 335 (677)
T ss_pred EEecCCHHHHH
Confidence 99999999873
No 15
>KOG0164|consensus
Probab=100.00 E-value=8.1e-61 Score=443.56 Aligned_cols=201 Identities=37% Similarity=0.623 Sum_probs=184.9
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
|+++++|||||||||||||.||||||||||||.|+||-+|..+|++|..|||||||||.|.+||||||||||||.|++++
T Consensus 134 Kn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~ 213 (1001)
T KOG0164|consen 134 KNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQ 213 (1001)
T ss_pred HHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC-CccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLK-KIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~-~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+..+|+|. ++..|.||+++ +..+.+++|+. +|+.+++
T Consensus 214 ~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~-----------------------------------------dfk~V~~ 251 (1001)
T KOG0164|consen 214 LLRQLGLERNPQSYNYLNQG-SAKVSSINDAS-----------------------------------------DFKAVQK 251 (1001)
T ss_pred HHHHhccccCcchhhhhhhh-hhhhcccccHH-----------------------------------------HHHHHHH
Confidence 99999995 78899999986 55555555544 4558999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|++.+|+|+|||||||||+|...+. +..+.+...++.+|+||++.+++|+++||+|++.++||.
T Consensus 252 Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed------~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~ 325 (1001)
T KOG0164|consen 252 AMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED------SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEI 325 (1001)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc------ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999987543 223556689999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+++++.||
T Consensus 326 v~k~hn~~qA 335 (1001)
T KOG0164|consen 326 VLKQHNVEQA 335 (1001)
T ss_pred hhccccHHHH
Confidence 9999999987
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.6e-59 Score=457.83 Aligned_cols=204 Identities=43% Similarity=0.709 Sum_probs=180.6
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
.+.+.++||||||||||||++|+||||||||++|+|+.+|.++||+|++||||||||+.|++||||||||||||+|++++
T Consensus 125 ~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~ 204 (689)
T PF00063_consen 125 EKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDE 204 (689)
T ss_dssp HHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHH
T ss_pred cceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccceecccccccceeeccccccccchhhhhhhccchh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+|++|+|.++.+|+||+++++...++.+|..+ |..+++|
T Consensus 205 ~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~-----------------------------------------f~~l~~a 243 (689)
T PF00063_consen 205 ERKELRLNDASDYRYLNQSGCSTIPGIDDAEE-----------------------------------------FQELKDA 243 (689)
T ss_dssp HHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHH-----------------------------------------HHHHHHH
T ss_pred hhhcccccccccccceecccccccCCccCHHH-----------------------------------------hhhhhhh
Confidence 99999999999999999988777777666544 4599999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|++|||+++++..||+|||||||||||+|....+ ++.+.+.+++.++.+|.||||++++|.++||+|++.+++|.+
T Consensus 244 l~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 319 (689)
T PF00063_consen 244 LKTLGFSDEEIDDIFRILAAILHLGNIEFVEDES----DESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETV 319 (689)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETT----SSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEE
T ss_pred hccccCchhHHHHHHHHHHHHhhhcccccccccc----ccceeechHHHHHHhhhhcCCCHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999998763 455688999999999999999999999999999999999999
Q ss_pred EEeCCcccC
Q psy17056 242 VINYRLPEV 250 (251)
Q Consensus 242 ~~~~~~~eA 250 (251)
.+|++.+||
T Consensus 320 ~~~~~~~~a 328 (689)
T PF00063_consen 320 TKPLSVEQA 328 (689)
T ss_dssp EEE-BHHHH
T ss_pred ccccchhhh
Confidence 999999987
No 17
>KOG0162|consensus
Probab=100.00 E-value=8.9e-59 Score=430.51 Aligned_cols=204 Identities=32% Similarity=0.607 Sum_probs=192.1
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+|+.++.+||+|||||||||+||+||||||||+||+|+..|..+|++|..|||||+|||.|.++||||||||||+.|++.
T Consensus 141 vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~ 220 (1106)
T KOG0162|consen 141 VKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQ 220 (1106)
T ss_pred hhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+.|..+++..+..|.||+.++|...+++||..+|+ .++.
T Consensus 221 ~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq-----------------------------------------~Tl~ 259 (1106)
T KOG0162|consen 221 EYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ-----------------------------------------ETLH 259 (1106)
T ss_pred HHHhhhCcCCchheeeeccccceeccccchHHHHH-----------------------------------------HHHH
Confidence 99999999999999999999999999888876665 8999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcC---
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARAS--- 237 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~--- 237 (251)
||+++|+.++||+.||++||+|||||||.|.+.++ .+.|.+.+.++.+|.||||+...|++.||.|.|.+.
T Consensus 260 AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~~------~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 260 AMKVIGINQEEQDEVLRMVAGILHLGNISFIEEGN------YAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HheeccCChHHHHHHHHHHHHHHhccceeEEeeCC------cceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999998432 356899999999999999999999999999999864
Q ss_pred -CeEEEEeCCcccCC
Q psy17056 238 -DETLVINYRLPEVL 251 (251)
Q Consensus 238 -ge~i~~~~~~~eA~ 251 (251)
.|.+.+||+++||.
T Consensus 334 kr~~~~v~LNv~QA~ 348 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQAS 348 (1106)
T ss_pred cceeEEecccHHHHH
Confidence 49999999999983
No 18
>KOG0163|consensus
Probab=100.00 E-value=9e-59 Score=431.40 Aligned_cols=235 Identities=32% Similarity=0.549 Sum_probs=196.0
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
|++.++-|||||||||||||.||+||||||||++|||+.+|.++|+-+++|||||||||.|+.+||||||||||++|+++
T Consensus 178 Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~ 257 (1259)
T KOG0163|consen 178 IQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASP 257 (1259)
T ss_pred HHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcc-cCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYT-LDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQ 159 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~-~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~ 159 (251)
+++++|+|.+|++|+||+. ||.. ..+... + +.+.++ ..++ ..-..|+..++-+||..+|.++.
T Consensus 258 dl~~kL~L~~pd~f~YL~r-G~t~yFan~~t--~-~ki~~n----r~S~--------~~~~~~~~kD~iidD~~dF~rl~ 321 (1259)
T KOG0163|consen 258 DLRKKLSLGKPDDFRYLKR-GCTQYFANAKT--E-QKIPGN----RKSK--------NHQQKGSLKDPIIDDYQDFHRLE 321 (1259)
T ss_pred HHHHHhccCCchhhhHHhc-chhhhccCcch--h-hcCccc----ccCc--------cccccCcccCcccccHHHHHHHH
Confidence 9999999999999999985 3322 111000 0 000000 0000 00112445566678889999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEc---
Q psy17056 160 QSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARA--- 236 (251)
Q Consensus 160 ~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~--- 236 (251)
.||..+|++++|...||+++|||||||||+|++..++..++|.+.-.+...|..+|+|||+++++|.-+||.|.|.+
T Consensus 322 ~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~G 401 (1259)
T KOG0163|consen 322 KALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKG 401 (1259)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999876655556666666778899999999999999999999999884
Q ss_pred --CCeEEEEeCCcccCC
Q psy17056 237 --SDETLVINYRLPEVL 251 (251)
Q Consensus 237 --~ge~i~~~~~~~eA~ 251 (251)
.|..|++|+.++||.
T Consensus 402 G~kGTvIrVPLK~~eA~ 418 (1259)
T KOG0163|consen 402 GFKGTVIRVPLKIHEAS 418 (1259)
T ss_pred CccceEEEeeccHHhhc
Confidence 579999999999983
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.2e-57 Score=443.63 Aligned_cols=191 Identities=30% Similarity=0.434 Sum_probs=165.0
Q ss_pred hhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChhHH
Q psy17056 4 VKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDR 83 (251)
Q Consensus 4 ~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~~~ 83 (251)
.+..+||||||||||||.+||||||||||++|+|+.+|.|+||+|++|||||||||.|++||||||||||||+|++++++
T Consensus 125 ~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~ 204 (767)
T cd01386 125 KVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLR 204 (767)
T ss_pred HHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccccccccCCCC-cccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHHH
Q psy17056 84 HSLHLKKIESYHYLNRSGP-YTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQSM 162 (251)
Q Consensus 84 ~~l~L~~~~~y~yL~~~~~-~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~Al 162 (251)
++|+|.+...+.+.....+ ...++. +|...|+.+++||
T Consensus 205 ~~l~L~~~~~~~~~~~~~~~~~~d~~-----------------------------------------~D~~~f~~~~~Al 243 (767)
T cd01386 205 TELHLEQMAESSSFGMGGLSKPEDKQ-----------------------------------------KAAIDFSRLQQAM 243 (767)
T ss_pred HHhcCCCccccchhhcCCCCCCcCcc-----------------------------------------cHHHHHHHHHHHH
Confidence 9999987655433332211 112223 3455677999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 163 EMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 163 ~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
++|||+++|+..||+|||||||||||+|.... +.+.+.+++.++.+|.||||++++|.++|++++++.+++.+
T Consensus 244 ~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~------~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~ 316 (767)
T cd01386 244 EVLGISEGEQRAIWRVLAAIYHLGAAGATKVA------GRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQM 316 (767)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhccCceeeecC------CccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceee
Confidence 99999999999999999999999999997621 23567889999999999999999999999999888776543
No 20
>KOG0160|consensus
Probab=100.00 E-value=1.5e-51 Score=396.91 Aligned_cols=204 Identities=33% Similarity=0.551 Sum_probs=187.9
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
|++.++.+|||+||||||||.+|+||||||||++|+|+.+|+|.||.++|||||||||+.++++|||||||||+|+|.+
T Consensus 130 vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~- 208 (862)
T KOG0160|consen 130 IENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP- 208 (862)
T ss_pred HHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+++.+|+|..+..|.|+++++|..+.+++|..+|. .++.
T Consensus 209 ~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~-----------------------------------------~t~~ 247 (862)
T KOG0160|consen 209 EELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFL-----------------------------------------STTE 247 (862)
T ss_pred hhhhccCcCccccceecccccchhhcccccHHHHH-----------------------------------------HHHH
Confidence 99999999999999999999999888888776655 8999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||..+|++.++|..||++||||||||||+|...... ..+...+. .+..+|.|||++.+.|...|+.|.+.+++|+
T Consensus 248 A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~----~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~ 322 (862)
T KOG0160|consen 248 AMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEE----TSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTARES 322 (862)
T ss_pred HHHHhcCChHHHHHHHHHHHHHhccCceEeeccccc----ccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcccce
Confidence 999999999999999999999999999999876532 22223333 8899999999999999999999999999999
Q ss_pred EEEeCCcccCC
Q psy17056 241 LVINYRLPEVL 251 (251)
Q Consensus 241 i~~~~~~~eA~ 251 (251)
|+++++..+|+
T Consensus 323 i~k~l~~~qa~ 333 (862)
T KOG0160|consen 323 IVKPLTLSQAV 333 (862)
T ss_pred eecccCHHHHH
Confidence 99999988874
No 21
>KOG0161|consensus
Probab=100.00 E-value=1.5e-50 Score=414.24 Aligned_cols=203 Identities=36% Similarity=0.633 Sum_probs=187.1
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
.+.+..+||||||||||+|++|+|||||||||.|+|+.+|.|+||.|.+||||||||++|+++|||||||||+|.|.++.
T Consensus 210 e~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~ 289 (1930)
T KOG0161|consen 210 EDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPE 289 (1930)
T ss_pred HHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC-ccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLKK-IESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~~-~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++..|.|.+ +.+|.|+.++.. ++++++|+.+|. .+..
T Consensus 290 l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~-----------------------------------------~t~~ 327 (1930)
T KOG0161|consen 290 LKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQ-----------------------------------------ETDE 327 (1930)
T ss_pred HHHHHhhcccchhhhhhccccC-CCCCcchHHHHH-----------------------------------------HHHH
Confidence 999999975 889999987665 777877766554 8999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||+++||+++|+.+||+|+|||||||||.|.... +.+...+.+.+.+..+|.||||+.++|.++|+++.++++++.
T Consensus 328 a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~----~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~ 403 (1930)
T KOG0161|consen 328 AMDILGFSEEEKISIFRIVSAILHLGNIKFKQEP----REEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREW 403 (1930)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccc----cccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchh
Confidence 9999999999999999999999999999998753 245567899999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+...-+.+||
T Consensus 404 v~k~q~~~q~ 413 (1930)
T KOG0161|consen 404 VSKAQNVEQV 413 (1930)
T ss_pred hhhcchHHHH
Confidence 9988887765
No 22
>KOG4229|consensus
Probab=100.00 E-value=2.8e-42 Score=339.88 Aligned_cols=206 Identities=39% Similarity=0.660 Sum_probs=190.3
Q ss_pred hhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChhH
Q psy17056 3 KVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQD 82 (251)
Q Consensus 3 ~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~~ 82 (251)
..+.+|||+||+||||+|.+||||||||||+++.|..+|.+.||++..|||||+||+.|..+||||||||++++|++.++
T Consensus 185 ~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e 264 (1062)
T KOG4229|consen 185 QLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENE 264 (1062)
T ss_pred hhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccccccccCCCCccc-CCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 83 RHSLHLKKIESYHYLNRSGPYTL-DNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 83 ~~~l~L~~~~~y~yL~~~~~~~~-~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
+..+.|..+.+|.||+...+..+ ++.++ ..+|.++..+
T Consensus 265 ~~~~~l~~~e~y~yL~~~~~~~~~d~~~~-----------------------------------------~~~~~~l~~~ 303 (1062)
T KOG4229|consen 265 LKAFVLGEAENYEYLEQGALFTISDGEDD-----------------------------------------VAQFIRLEAA 303 (1062)
T ss_pred hhHHhhcCCCCHHHhhccccccccchHHH-----------------------------------------HHhHHHHHHH
Confidence 99999999999999999877665 44433 3456699999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|+++||+.+++.+||++++||||+|||.|...... ..+...+.|...+..+|.||.++++.|.++||.++..++||.+
T Consensus 304 m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~--~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~ 381 (1062)
T KOG4229|consen 304 MSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALD--QQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELL 381 (1062)
T ss_pred HHHhccchhHHHHHHHhcccceeecceeHHhhhcc--cccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhh
Confidence 99999999999999999999999999999876542 4566789999999999999999999999999999999999999
Q ss_pred EEeCCcccCC
Q psy17056 242 VINYRLPEVL 251 (251)
Q Consensus 242 ~~~~~~~eA~ 251 (251)
..+|++++|+
T Consensus 382 ~~~l~~~~A~ 391 (1062)
T KOG4229|consen 382 LAPLLVERAV 391 (1062)
T ss_pred hhhhhHHHhc
Confidence 9999999985
No 23
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=92.80 E-value=0.22 Score=49.19 Aligned_cols=120 Identities=14% Similarity=0.258 Sum_probs=71.8
Q ss_pred CchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc-----h---HHHHHHHHHHHHHcCCCHHHHHHHH
Q psy17056 108 VDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD-----E---KYEFSRLQQSMEMVGFTQEKQRRLF 176 (251)
Q Consensus 108 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~-----~---~~~f~~l~~Al~~lG~~~~e~~~I~ 176 (251)
.+|..+|..+..||+.+||+++++..+|++++++ |+..+...+ + -..-..+..+.+.||++.++....+
T Consensus 233 ~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L 312 (653)
T cd01379 233 KFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEAL 312 (653)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHh
Confidence 4578899999999999999999999999999997 333221110 1 1234568888999999999765443
Q ss_pred HHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 177 AVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 177 ~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
-.- .+..++-.+... ....++....|.=+-...+.|+.+=.+.+-.+|...
T Consensus 313 ~~~--~~~~~ge~i~~~---~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~ 363 (653)
T cd01379 313 TSH--CVVTRGETIVRH---NTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHD 363 (653)
T ss_pred ccc--EEEeCCceeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 110 011111111100 001112222233334566677777777777777654
No 24
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=86.86 E-value=0.67 Score=38.10 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=29.5
Q ss_pred hhchHHHHhc-CcccCCCCCCCCccceEEEEeCCCCc
Q psy17056 7 KEKNKIHAFG-NAKTAHNNNSSRFGKFIQVNYKENGM 42 (251)
Q Consensus 7 ~~n~iLEaFG-nAkT~~N~nSSRfgk~~~l~f~~~g~ 42 (251)
...+..+++. +|.|.+|++|||+..+++|++.....
T Consensus 60 ~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 60 DLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred HHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 4455667788 99999999999999999999975443
No 25
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=83.46 E-value=1.9 Score=42.91 Aligned_cols=110 Identities=15% Similarity=0.271 Sum_probs=63.3
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhCCC---CccCCcc--h---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceE
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSASGP---YTLDNVD--E---KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVE 189 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~~~---~~~~~~~--~---~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~ 189 (251)
..||+.+||+++++..+|++|+++-+ ..+...+ + ...-..+..+.+.||++.++....+- .-.+..|+=.
T Consensus 243 ~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~--~~~~~~~~e~ 320 (691)
T cd01380 243 VQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLV--KRQIVTRSEK 320 (691)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHH--hCEEEECCee
Confidence 46899999999999999999999833 3221111 0 01123678889999999988654321 1112222211
Q ss_pred EeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 190 FVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 190 F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+... ....++...+|.-+....+.|+.+=.+.+-.+|...
T Consensus 321 i~~~---~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~ 360 (691)
T cd01380 321 IVKP---LTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTG 360 (691)
T ss_pred EEec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 1110 001122222333344566777887777777777655
No 26
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=80.93 E-value=2.6 Score=42.14 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCC---CccCCcc---h-----HHHHHHHHHHHHHcCCCH
Q psy17056 101 GPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGP---YTLDNVD---E-----KYEFSRLQQSMEMVGFTQ 169 (251)
Q Consensus 101 ~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~---~~~~~~~---~-----~~~f~~l~~Al~~lG~~~ 169 (251)
++...++++|..+|..+..||+.+||+++++..+|++|+++-+ ..+...+ + ......+..+.+.||++.
T Consensus 251 ~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~ 330 (717)
T cd01382 251 GALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQ 330 (717)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCH
Confidence 4445678999999999999999999999999999999999733 2221110 0 012346788999999999
Q ss_pred HHHHHH
Q psy17056 170 EKQRRL 175 (251)
Q Consensus 170 ~e~~~I 175 (251)
++....
T Consensus 331 ~~L~~~ 336 (717)
T cd01382 331 DDLRVS 336 (717)
T ss_pred HHHHHH
Confidence 876544
No 27
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=80.40 E-value=2.5 Score=42.05 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=61.7
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCcch-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEE
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVDE-----KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEF 190 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~~-----~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F 190 (251)
.||+.+||+++++..+|++|+++ |+..+...++ ...-..+..+.+.||++.++....+ +.-.+..|+-.+
T Consensus 243 ~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l--~~~~~~~~~e~~ 320 (677)
T cd01383 243 EALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLAL--STRKMHVNNDNI 320 (677)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHh--hhcEEEeCCceE
Confidence 57999999999999999999997 3333311110 0112357889999999998765432 111122232111
Q ss_pred eecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 191 VPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
... ....++....|.-+....+.|+.+=.+.+-.+|...
T Consensus 321 ~~~---~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~ 359 (677)
T cd01383 321 VQK---LTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVG 359 (677)
T ss_pred eec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 110 001112222233334556677777777777777643
No 28
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=80.39 E-value=2.6 Score=41.92 Aligned_cols=110 Identities=17% Similarity=0.286 Sum_probs=62.0
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhCC---CCccCCcc--h----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcce
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSASG---PYTLDNVD--E----KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNV 188 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~~---~~~~~~~~--~----~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI 188 (251)
..||+.+||+++++..+|++|+++- +......+ + -.....+..+.+.||++.++....+- .-.+..|+=
T Consensus 246 ~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~--~~~~~~~~e 323 (677)
T smart00242 246 LNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALT--KRKIKTGGE 323 (677)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhc--ccEEEeCCc
Confidence 4789999999999999999999973 32221110 0 12345688889999999987654421 111222331
Q ss_pred EEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 189 EFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 189 ~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
.+...- ...++....+.-+....+.|+.+=.+.+-.+|..+
T Consensus 324 ~~~~~~---~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~ 364 (677)
T smart00242 324 VITKPL---NVEQALDARDALAKALYSRLFDWLVKRINKSLSFK 364 (677)
T ss_pred eEEecC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111110 01112222233334456667777777776666543
No 29
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=80.34 E-value=2.8 Score=41.66 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=41.4
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhCCC---CccCCcc----hHHHHHHHHHHHHHcCCCHHHHHHH
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSASGP---YTLDNVD----EKYEFSRLQQSMEMVGFTQEKQRRL 175 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~~~---~~~~~~~----~~~~f~~l~~Al~~lG~~~~e~~~I 175 (251)
..||+.+||+++++..+|++++++-+ ......+ .-.+-..+..+.+.||++.++....
T Consensus 240 ~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 304 (674)
T cd01378 240 QNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGAAVISDKDVLDFAAYLLGVDPSELEKA 304 (674)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCCccccCChHHHHHHHHHcCCCHHHHHHH
Confidence 46899999999999999999999833 3221111 0112346788899999999876544
No 30
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=79.91 E-value=3 Score=42.06 Aligned_cols=64 Identities=30% Similarity=0.397 Sum_probs=47.0
Q ss_pred HHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCC---ccCCcc---hHHHHHHHHHHHHHcCCCHHHHHHH
Q psy17056 112 YEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPY---TLDNVD---EKYEFSRLQQSMEMVGFTQEKQRRL 175 (251)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~---~~~~~~---~~~~f~~l~~Al~~lG~~~~e~~~I 175 (251)
.+|..+..||+.+||+++++..+|++|+++-++ ...... .-.....+..+.+.||++.++....
T Consensus 234 ~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~~~~~~~~~~~~~~vA~LLgv~~~~L~~a 303 (767)
T cd01386 234 IDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVAGRKQFARPEWAQKAAELLGCPLEELSSA 303 (767)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecCCccccCCHHHHHHHHHHhCCCHHHHHHH
Confidence 358899999999999999999999999998433 221100 1112346778899999999886543
No 31
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=79.75 E-value=3.2 Score=41.39 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=65.5
Q ss_pred HhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCc--chH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcc
Q psy17056 116 RLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV--DEK---YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGN 187 (251)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~--~~~---~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGN 187 (251)
.+..||+.+|++++++..+|++|+++ |+..+... ++. ..-..+..|.+.||++.++....+ +.-.+..|+
T Consensus 250 ~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l--~~~~~~~~~ 327 (693)
T cd01377 250 LTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKAL--LHPRIKVGR 327 (693)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHh--cceEEEECC
Confidence 45689999999999999999999997 44333211 111 123468889999999998765442 111223343
Q ss_pred eEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 188 VEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 188 I~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
-.+... ....++...+|.-+....+.|+.+=.+.+-.+|...
T Consensus 328 e~i~~~---~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~ 369 (693)
T cd01377 328 EWVTKG---QNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK 369 (693)
T ss_pred eeEeeC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 222111 011122223333344566677777777776666544
No 32
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=78.15 E-value=3.6 Score=40.92 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=41.3
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhC---CCCccCCc--------chHHHHHHHHHHHHHcCCCHHHHHHH
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV--------DEKYEFSRLQQSMEMVGFTQEKQRRL 175 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~--------~~~~~f~~l~~Al~~lG~~~~e~~~I 175 (251)
..||+.+||+++++..+|++|+++ |+..+... .+...-..+..+.+.||++.++....
T Consensus 242 ~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 310 (674)
T cd01384 242 RRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDA 310 (674)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHH
Confidence 478999999999999999999997 33322111 11111246888999999999876543
No 33
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=77.51 E-value=3.8 Score=40.79 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=63.1
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhCC---CCccCCcc-------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcc
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSASG---PYTLDNVD-------EKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGN 187 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~~---~~~~~~~~-------~~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGN 187 (251)
..||+.+||+++++..+|++|+++- +....... .-.....+..+.+.||++.++....+- .-+...|+
T Consensus 238 ~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~--~~~~~~~~ 315 (679)
T cd00124 238 KEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALT--YKVTKVGG 315 (679)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhh--ccEEEeCC
Confidence 4689999999999999999999973 33222110 011234688889999999987654421 11222333
Q ss_pred eEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 188 VEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 188 I~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
=.+.. . ....++....|.-+....+.|+..=.+.+-.+|..+
T Consensus 316 ~~~~~-~--~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~ 357 (679)
T cd00124 316 EVITI-P--LTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK 357 (679)
T ss_pred ceEEe-c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111 0 001122223333344566677777777777777543
No 34
>PTZ00014 myosin-A; Provisional
Probab=77.16 E-value=3.8 Score=41.64 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=61.5
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCC-----cchH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDN-----VDEK-----YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLL 185 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~-----~~~~-----~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhL 185 (251)
.||+.+||+++++..+|++++++ |+..+.. ..+. .....+..+.+.||++.++....+ +.-.+..
T Consensus 336 ~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L--~~~~~~~ 413 (821)
T PTZ00014 336 ESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKEL--TVKVTYA 413 (821)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHh--hceEEEe
Confidence 57999999999999999999997 3333211 1111 113467889999999998765432 1111223
Q ss_pred cceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 186 GNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 186 GNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
|+-..... ....++....|.-+-...+.|+.+=.+.+-.+|..
T Consensus 414 ~~e~i~~~---~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~ 456 (821)
T PTZ00014 414 GNQKIEGP---WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEP 456 (821)
T ss_pred CCeeEecC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33111110 00111222223333455667777777777777754
No 35
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=74.05 E-value=5.6 Score=39.71 Aligned_cols=110 Identities=27% Similarity=0.307 Sum_probs=62.8
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhC---CCCccCC-----cchH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhc
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDN-----VDEK---YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLG 186 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~-----~~~~---~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLG 186 (251)
..||+.+||+++++..+|++|+++ |+..+.. .++. ..-..+..+.+.||++.++....+-. -.+..|
T Consensus 248 ~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~--~~~~~~ 325 (692)
T cd01385 248 KQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTK--KRTVTV 325 (692)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhcc--CeEEeC
Confidence 468999999999999999999997 3333211 0111 12346788899999999875543211 111122
Q ss_pred ceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 187 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 187 NI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+-.+... ....++...+|.=+-...+.|+.+=.+.+-.+|..+
T Consensus 326 ~e~i~~~---~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~ 368 (692)
T cd01385 326 NETLILP---YSLSEAITARDAMAKCLYSALFDWIVLRINHALLNK 368 (692)
T ss_pred CCeEEec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2111110 001111122233334566778888888887777654
No 36
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=72.83 E-value=6.1 Score=42.01 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=70.4
Q ss_pred hhhhcCccHHHHHHHHHHHhhC---CCCccCCc-chHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEee
Q psy17056 120 SMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV-DEKYE---FSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVP 192 (251)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~-~~~~~---f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~ 192 (251)
||.++||+++++..+|.+|++. |+...... ++... -..+..+...||+++..... .++-=++.-|.=....
T Consensus 309 AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~~~~~~~c~LLgId~~~f~k--~lvk~~ikt~~E~i~~ 386 (1463)
T COG5022 309 ALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLDKACYLLGIDPSLFVK--WLVKRQIKTGGEWIVV 386 (1463)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchhhcCCchHHHHHHHHhCCCHHHHHH--HHHHhHhhcCceEEEe
Confidence 6899999999999999999987 44433221 22222 24688899999999876432 2333333344311111
Q ss_pred cCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceE
Q psy17056 193 RKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHA 234 (251)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~ 234 (251)
.- ....++.+.|.-+-...+.|++.=.+.+-++|.+...
T Consensus 387 ~~---n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~ 425 (1463)
T COG5022 387 PL---NLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA 425 (1463)
T ss_pred cC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 11 1123444555556667888999999999999987654
No 37
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=72.57 E-value=6.6 Score=39.08 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=60.8
Q ss_pred hhhhhhhcCccHHHHHHHHHHHhhCC---CCccCCc----ch---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhc
Q psy17056 117 LQQSMEMVGFTQEKQRRLFAVLSASG---PYTLDNV----DE---KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLG 186 (251)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~l~~~~---~~~~~~~----~~---~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLG 186 (251)
+..||+.+||+++++..+|++|+++- +..+... .+ -..-..+..+.+.||++.++....+.. -+...|
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~--~~~~~~ 314 (677)
T cd01387 237 LLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITF--KVTETR 314 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcc--CeEEeC
Confidence 46799999999999999999999973 3222110 00 011235788899999999876544211 011111
Q ss_pred ceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 187 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 187 NI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
+-.+.. +....++...+|.-+....+.|+.+=.+.+-.+|..
T Consensus 315 ~e~i~~---~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~ 356 (677)
T cd01387 315 REKIFT---PLTVESAVDARDAIAKVLYALLFNWLITRVNALVSP 356 (677)
T ss_pred CceEec---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111100 000111222233334456667777777777776653
No 38
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=72.52 E-value=4.4 Score=40.27 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=37.5
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcch-----HHHHHHHHHHHHHcCCCHHHHH
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVDE-----KYEFSRLQQSMEMVGFTQEKQR 173 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~~-----~~~f~~l~~Al~~lG~~~~e~~ 173 (251)
+.||+.+|++++++..+|++|+++ |+..+....+ ..+-..+..+.+.||++.++..
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~ 304 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELE 304 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHH
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHH
Confidence 478999999999999999999997 4443322110 1122358889999999988643
No 39
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=71.61 E-value=6 Score=39.31 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=61.4
Q ss_pred hhhhhcCccHHHHHHHHHHHhhCC---CCccCCc-----c--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcce
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSASG---PYTLDNV-----D--EKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNV 188 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~~---~~~~~~~-----~--~~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI 188 (251)
.||+.+||+++++..+|++|+++- +..+... + .-..-..+..+.+.||++.++....+- .-.+..|+-
T Consensus 238 ~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt--~~~~~~~~e 315 (671)
T cd01381 238 SAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALT--SRTIFTRGE 315 (671)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhc--eEEEEeCCc
Confidence 589999999999999999999973 3322110 0 011234688899999999987554331 111112221
Q ss_pred EEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 189 EFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 189 ~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
.+... ....++...+|.-+....+.|+.+=.+.+-.+|..+
T Consensus 316 ~i~~~---~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~ 356 (671)
T cd01381 316 TVVTP---LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKP 356 (671)
T ss_pred eEEec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 11110 001112222233344566677777777777777544
No 40
>KOG0163|consensus
Probab=66.40 E-value=15 Score=36.79 Aligned_cols=81 Identities=17% Similarity=0.390 Sum_probs=58.1
Q ss_pred cccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCc-chHH--------HHHHHHHHHHHcCCCHH
Q psy17056 103 YTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV-DEKY--------EFSRLQQSMEMVGFTQE 170 (251)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~-~~~~--------~f~~l~~Al~~lG~~~~ 170 (251)
...+-+||-.+|.++..||..+|.+++|..-+|.+.+++ |+..+... ||.. .=+.+..|.+.||+.+.
T Consensus 306 ~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~ 385 (1259)
T KOG0163|consen 306 LKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQT 385 (1259)
T ss_pred ccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHH
Confidence 344567888999999999999999999999999999886 33322111 1111 12468889999999998
Q ss_pred HHHHHHHHHHHHhhh
Q psy17056 171 KQRRLFAVLSAVLLL 185 (251)
Q Consensus 171 e~~~I~~iLaaILhL 185 (251)
|.. ..+.+-|+.-
T Consensus 386 elr--~~L~aRvMqt 398 (1259)
T KOG0163|consen 386 ELR--TGLCARVMQT 398 (1259)
T ss_pred HHH--HHHHHHHHHh
Confidence 865 3455566643
No 41
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=62.78 E-value=16 Score=22.87 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFAVL 179 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~iL 179 (251)
.++..||..|||+..|...+.+-+
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 378999999999998765554433
No 42
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=58.94 E-value=29 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=14.9
Q ss_pred CHHHHHHHHhhcCCCHHHHH
Q psy17056 207 NTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 207 ~~~~l~~vA~LLgv~~~~L~ 226 (251)
+.+.+..+|..|||++++|.
T Consensus 39 ~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 39 SLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp -HHHHHHHHHHHT--HHHCT
T ss_pred cHHHHHHHHHHcCCCHHHHh
Confidence 45789999999999999874
No 43
>COG4056 McrC Methyl coenzyme M reductase, subunit C [Coenzyme metabolism]
Probab=57.47 E-value=2.4 Score=34.02 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=26.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhhhcceE
Q psy17056 160 QSMEMVGFTQEKQRRLFAVLSAVLLLGNVE 189 (251)
Q Consensus 160 ~Al~~lG~~~~e~~~I~~iLaaILhLGNI~ 189 (251)
+.=.++|++++|...|-+---++.||||+.
T Consensus 86 ~~g~tfgl~P~Eveqi~rHkl~ViHlGnvk 115 (204)
T COG4056 86 QRGSTFGLSPEEVEQINRHKLAVIHLGNVK 115 (204)
T ss_pred ccCCccccCHHHHHHhhhceEEEEEecchH
Confidence 344678999999999999999999999975
No 44
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=54.18 E-value=47 Score=21.60 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAV-LSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~i-LaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~ 226 (251)
+++++.+..|++..+......+ -+.|-.+=+ +. ...+...+..+|..|||+++.|.
T Consensus 3 ~lk~~r~~~~lt~~~~a~~~~i~~~~i~~~e~------------g~--~~~~~~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 3 RLKELREEKGLTQKDLAEKLGISRSTISKIEN------------GK--RKPSVSTLKKIAEALGVSLDELF 59 (64)
T ss_dssp HHHHHHHHCT--HHHHHHHHTS-HHHHHHHHT------------TS--S--BHHHHHHHHHHHTS-HHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC------------CC--cCCCHHHHHHHHHHhCCCHHHHh
Confidence 5666667777777766654444 222222211 11 13346789999999999999874
No 45
>PHA01976 helix-turn-helix protein
Probab=49.59 E-value=41 Score=22.11 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~ 226 (251)
++..+.+..|++..+......+=.. ++.+++ . + ....+.+.+..+|..|||+++.|.
T Consensus 6 rl~~~R~~~glt~~~lA~~~gvs~~--~v~~~e---~------g--~~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 6 QLIKARNARAWSAPELSRRAGVRHS--LIYDFE---A------D--KRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH---c------C--CCCCCHHHHHHHHHHHCcCHHHHh
Confidence 5667777778888776555432211 122222 1 1 124567789999999999999884
No 46
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=48.41 E-value=57 Score=23.49 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=36.9
Q ss_pred hhhhcCccHHHHHHHHHHHhhC-------CCCccCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhh
Q psy17056 120 SMEMVGFTQEKQRRLFAVLSAS-------GPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLL 185 (251)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhL 185 (251)
-+...|++.....++++..+.. .||.+-..-+...|+...+.-..+|+..++ -.|+-|+|++.
T Consensus 14 ~L~~~gl~~~~a~kl~~~yg~~ai~~l~~nPY~L~~~i~gi~F~~aD~iA~~~g~~~~d---~~Ri~A~i~~~ 83 (94)
T PF14490_consen 14 FLQEYGLSPKLAMKLYKKYGDDAIEILKENPYRLIEDIDGIGFKTADKIALKLGIEPDD---PRRIRAAILYV 83 (94)
T ss_dssp HHHHTT--HHHHHHHHHHH-TTHHHHHHH-STCCCB-SSSSBHHHHHHHHHTTT--TT----HHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHhHHHHHHHHHChHHHHHHccCCCHHHHHHHHHHcCCCCCC---HHHHHHHHHHH
Confidence 3445688888888888876542 666554422344588888877889998764 56667777654
No 47
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=46.53 E-value=1.8 Score=25.05 Aligned_cols=8 Identities=88% Similarity=1.506 Sum_probs=5.8
Q ss_pred CCccceEE
Q psy17056 27 SRFGKFIQ 34 (251)
Q Consensus 27 SRfgk~~~ 34 (251)
||||||++
T Consensus 8 ~rfgk~ik 15 (37)
T PF08199_consen 8 SRFGKFIK 15 (37)
T ss_pred HHHHHHHH
Confidence 67888764
No 48
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=46.22 E-value=2e+02 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.5
Q ss_pred ecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 205 VRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 205 v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
......+..||.+||++..++...+-.
T Consensus 148 ~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 148 PNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333567999999999999998877653
No 49
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=44.11 E-value=52 Score=22.42 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEee
Q psy17056 154 EFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVP 192 (251)
Q Consensus 154 ~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~ 192 (251)
++....++|+.+||+..++..+.+=|--+. =||-.|.+
T Consensus 10 R~daA~dam~~lG~~~~~v~~vl~~LL~lY-~~nW~lIE 47 (65)
T PF10440_consen 10 RIDAALDAMRQLGFSKKQVRPVLKNLLKLY-DGNWELIE 47 (65)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCchhhh
Confidence 455788999999999998776655443322 26755554
No 50
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=42.27 E-value=22 Score=27.69 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCHHHHHHhHhhceEEcCCeEEEEeCCccc
Q psy17056 210 VVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPE 249 (251)
Q Consensus 210 ~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i~~~~~~~e 249 (251)
.+..+|.+||++.+++.+.+..+-=...+..+..+.+.++
T Consensus 99 s~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~~~ 138 (143)
T PF10075_consen 99 SLSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNPEE 138 (143)
T ss_dssp -HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---HHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCCcc
Confidence 3788999999999999999999866666666666655443
No 51
>KOG0164|consensus
Probab=41.46 E-value=64 Score=32.41 Aligned_cols=57 Identities=18% Similarity=0.429 Sum_probs=40.9
Q ss_pred hhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcchH---HHHHHHHHHHHHcCCCHHHHH
Q psy17056 117 LQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVDEK---YEFSRLQQSMEMVGFTQEKQR 173 (251)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~~~---~~f~~l~~Al~~lG~~~~e~~ 173 (251)
++.||.++||+++|-...|+++++. |+..+....|. ..-..+...-+.++.+.++..
T Consensus 249 V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~~~~~~~~~l~~~aell~v~~del~ 311 (1001)
T KOG0164|consen 249 VQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDSSGIVNGAQLKYIAELLSVTGDELE 311 (1001)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCcccccchhHHHHHHHHHHcCCHHHHH
Confidence 5789999999999999999999987 33322211111 112467778889999998875
No 52
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=40.94 E-value=59 Score=19.24 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=25.4
Q ss_pred ecCHHHHHHHHhhcCCCHHHHHHhH---hhceEEcCCeEEEEe
Q psy17056 205 VRNTEVVVLISELLRVKKETLLAAL---TAKHARASDETLVIN 244 (251)
Q Consensus 205 v~~~~~l~~vA~LLgv~~~~L~~aL---t~r~~~~~ge~i~~~ 244 (251)
|...|.+..+|.-+|++.++|.++= .... ...|+.+++|
T Consensus 3 V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~iP 44 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCIP 44 (44)
T ss_dssp E-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEEC
T ss_pred ECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEeC
Confidence 4556679999999999999998743 3333 4567777765
No 53
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=40.05 E-value=64 Score=21.40 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=29.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHh
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALT 230 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt 230 (251)
|+.+|+++.|.. |+.++|.-|.+. ...+|.-+|++.....++|-
T Consensus 1 L~~~gLs~~E~~----vy~~Ll~~~~~t---------------------~~eIa~~l~i~~~~v~~~L~ 44 (68)
T PF01978_consen 1 LEVLGLSENEAK----VYLALLKNGPAT---------------------AEEIAEELGISRSTVYRALK 44 (68)
T ss_dssp HHHHCHHHHHHH----HHHHHHHHCHEE---------------------HHHHHHHHTSSHHHHHHHHH
T ss_pred CCcCCcCHHHHH----HHHHHHHcCCCC---------------------HHHHHHHHCcCHHHHHHHHH
Confidence 457888887753 444445444422 66688999999987777654
No 54
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.57 E-value=28 Score=27.57 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcCCCHHHHHH
Q psy17056 208 TEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 208 ~~~l~~vA~LLgv~~~~L~~ 227 (251)
...+.++|+||||+++++.+
T Consensus 123 d~vi~RvAeLLgV~~~d~V~ 142 (148)
T COG4103 123 DHVIWRVAELLGVSPEDRVR 142 (148)
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 34689999999999999844
No 55
>KOG0161|consensus
Probab=39.45 E-value=36 Score=37.97 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=39.5
Q ss_pred hhhhcCccHHHHHHHHHHHhhCCCCccCC-----cchHH---HHHHHHHHHHHcCCCHHHH
Q psy17056 120 SMEMVGFTQEKQRRLFAVLSASGPYTLDN-----VDEKY---EFSRLQQSMEMVGFTQEKQ 172 (251)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~---~f~~l~~Al~~lG~~~~e~ 172 (251)
||+++||+++++..+|++++++.+++-.. ..+.. +......|+..+|++..+.
T Consensus 328 a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~ 388 (1930)
T KOG0161|consen 328 AMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEF 388 (1930)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHH
Confidence 68999999999999999999985543211 11222 3456788999999998874
No 56
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=37.40 E-value=1.5e+02 Score=21.05 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q psy17056 155 FSRLQQSMEMVGFTQEKQRRLFAV 178 (251)
Q Consensus 155 f~~l~~Al~~lG~~~~e~~~I~~i 178 (251)
+..+..+|..+|++.+++..|++.
T Consensus 29 ~~el~~~l~~~~~~~~ev~~i~~~ 52 (96)
T smart00027 29 GAQAKPILLKSGLPQTLLAKIWNL 52 (96)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457888888899999988888764
No 57
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=37.39 E-value=7.6 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.7
Q ss_pred HcCCCHHHHHHHHHHHHHHhhhcceE
Q psy17056 164 MVGFTQEKQRRLFAVLSAVLLLGNVE 189 (251)
Q Consensus 164 ~lG~~~~e~~~I~~iLaaILhLGNI~ 189 (251)
+.|++++|++.|-+-=.||+|+||+.
T Consensus 88 ~fgl~~~E~~qI~~HklAV~h~GNvk 113 (194)
T TIGR03264 88 TFGLTPEEIEQINRHKLAVIHLGNVK 113 (194)
T ss_pred ccCCCHHHHHHHhhcCEEEEEeCCHH
Confidence 56999999999999999999999974
No 58
>PF12728 HTH_17: Helix-turn-helix domain
Probab=36.92 E-value=32 Score=21.42 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCHHHHHHhHhhceE
Q psy17056 211 VVLISELLRVKKETLLAALTAKHA 234 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~r~~ 234 (251)
.+.+|++|||+...+.+.+....+
T Consensus 4 ~~e~a~~l~is~~tv~~~~~~g~i 27 (51)
T PF12728_consen 4 VKEAAELLGISRSTVYRWIRQGKI 27 (51)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCC
Confidence 567999999999999998876554
No 59
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=33.95 E-value=81 Score=25.12 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHH
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~ 226 (251)
.++.+.|..-|+...+.. ..||-||.|.-=.+.-. -..-..-+-..+..+|..||++.++|.
T Consensus 8 erV~~Ll~~~Gi~kr~~~---s~LA~iL~Is~ssa~RK------L~G~~~ftl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 8 ERVRELLDRKGIPKRKHA---SELADILGISYSSAYRK------LNGKSPFTLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred HHHHHHHHHcCCcchhhH---HHHHHHHCCCHHHHHHH------hcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence 478888999999887653 47788886654333211 011123456789999999999999998
No 60
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=32.92 E-value=58 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=25.8
Q ss_pred cceeecCHHHHHHHHhhcCCCHHHHHHhHh
Q psy17056 201 ESVTVRNTEVVVLISELLRVKKETLLAALT 230 (251)
Q Consensus 201 ~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt 230 (251)
..+.+.++..+..-|.-|||+++.|..|.-
T Consensus 13 ~~I~~~e~~ev~ywa~~~gvt~~~L~~AV~ 42 (57)
T PF12244_consen 13 DRIDLSEPYEVRYWAKRFGVTEEQLREAVR 42 (57)
T ss_pred HhcCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 346778889999999999999999998763
No 61
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=31.85 E-value=1.5e+02 Score=29.80 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=58.4
Q ss_pred hcCccHHHHHHHHHHHhhC-------CCCccCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhh-cceEEeecC
Q psy17056 123 MVGFTQEKQRRLFAVLSAS-------GPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLL-GNVEFVPRK 194 (251)
Q Consensus 123 ~~g~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhL-GNI~F~~~~ 194 (251)
..|++.....+++...+.. +||.+-.......|....+....+|+..+ +-.|+-|||+|. -...|.. +
T Consensus 152 ~~gi~~~~a~ki~~~yg~~~~~~i~~nPY~L~~~i~gigF~~aD~iA~~~g~~~~---d~~Ri~a~i~~~L~~~~~~~-G 227 (720)
T TIGR01448 152 GLGIGIKLAQRIYKFYQADTLDRVEKDPYLLAEDVKGIGFLTADQLAQALGIALN---DPRRITAGLVYSLQQACTEE-G 227 (720)
T ss_pred HcCCCHHHHHHHHHHHhHHHHHHHHhCchhhhhhcCCCCHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHHHHhhcC-C
Confidence 3477777777777654332 55544321122347676666677888754 456777888765 2222221 1
Q ss_pred CCCCCCcceeecCHHHHHHHHhhcCCC-------HHHHHHhHh
Q psy17056 195 SAYHHDESVTVRNTEVVVLISELLRVK-------KETLLAALT 230 (251)
Q Consensus 195 ~~~~~~~~~~v~~~~~l~~vA~LLgv~-------~~~L~~aLt 230 (251)
.+.+.-.+.++.++.||+++ ++.+..++.
T Consensus 228 -------ht~~~~~~l~~~~~~ll~~~~~~~~~~~~~l~~~~~ 263 (720)
T TIGR01448 228 -------HTYLPRNRFIKQVVHLLNVQPQERLLVPEAVELERL 263 (720)
T ss_pred -------CEEccHHHHHHHHHHHhCCCcccccccHHHHHHHHH
Confidence 23455567789999999998 466666554
No 62
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=31.28 E-value=53 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=15.8
Q ss_pred eEEEEeCC-CCcEeeeEeee
Q psy17056 32 FIQVNYKE-NGMVHGAVVQK 50 (251)
Q Consensus 32 ~~~l~f~~-~g~l~ga~i~~ 50 (251)
|++|.||. +|+|.|+++-.
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg 69 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVG 69 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEE
T ss_pred eeEEEEEeeccceeeeeeec
Confidence 67889997 89999998643
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=31.06 E-value=1.1e+02 Score=18.98 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.1
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHHH
Q psy17056 156 SRLQQSMEMVG---FTQEKQRRLFAVL 179 (251)
Q Consensus 156 ~~l~~Al~~lG---~~~~e~~~I~~iL 179 (251)
..++.+|..+| ++++++..||+..
T Consensus 8 ~~~~~~l~~~g~~~~s~~e~~~l~~~~ 34 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEEVDRLFREF 34 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 36777887776 6788877777654
No 64
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=30.61 E-value=53 Score=19.60 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCHHHHHHhHhhc
Q psy17056 211 VVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~r 232 (251)
++.+|++|||+...+.+.+-..
T Consensus 4 ~~e~a~~lgis~~ti~~~~~~g 25 (49)
T TIGR01764 4 VEEAAEYLGVSKDTVYRLIHEG 25 (49)
T ss_pred HHHHHHHHCCCHHHHHHHHHcC
Confidence 5679999999999998877544
No 65
>PF02962 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; InterPro: IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase transforms 5-carboxymethyl-2-hydroxy-muconic acid into 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid during the third step of the homoprotocatechuate catabolic pathway []. Homoprotocatechuate (HPC; 3,4-dihydroxyphenylacetate) is catabolized to Krebs cycle intermediates via extradiol (meta-) cleavage and the necessary enzymes are chromosomally encoded in a variety of bacteria []. 5-carboxymethyl-2-hydroxymuconate isomerase is probably a dimer of two identical subunits []. A comparison of the N-terminal half of the isomerase/decarboxylase sequence from the pathway (both encoded by the gene hpcE), with the second half showed significant similarity. This suggests that a duplication may have occurred to produce a bifunctional gene [].; PDB: 3E6Q_H 1OTG_B.
Probab=29.50 E-value=60 Score=25.02 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=31.2
Q ss_pred eeeEeeeeecccccccccCCCCcceeEEeeeccCCChhHHhhc
Q psy17056 44 HGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSL 86 (251)
Q Consensus 44 ~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~~~~~l 86 (251)
.|-+...+-++.-||....+...--||.-.+++|-+++.|+.+
T Consensus 37 ~~IK~Ra~~~~~y~vgdg~~~~~FvHv~l~il~GRs~e~k~~l 79 (124)
T PF02962_consen 37 GGIKVRAIRCDHYRVGDGQPDDAFVHVTLRILAGRSEEQKKAL 79 (124)
T ss_dssp GG-EEEEEEESSEEETTSSS-EEEEEEEEEEETT--HHHHHHH
T ss_pred hceeeeeEecccEEEccCCCCCcEEEEEeeecCCCCHHHHHHH
Confidence 3566777888888887666666677999999999999998765
No 66
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=29.01 E-value=56 Score=19.46 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.4
Q ss_pred HHHHHhhcCCCHHHHHH
Q psy17056 211 VVLISELLRVKKETLLA 227 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~ 227 (251)
+..+|+++||++..|..
T Consensus 2 i~e~A~~~gvs~~tlR~ 18 (38)
T PF00376_consen 2 IGEVAKLLGVSPRTLRY 18 (38)
T ss_dssp HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 45789999999999865
No 67
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=28.88 E-value=73 Score=28.84 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
+++++.+.+|++.+++..-+++=-..+ .+++ .+. .. ......--...+..+|.+|||+++.|...+-.
T Consensus 18 ~Lr~aRe~~GlSq~~vA~~l~l~~~~I--~~iE---~g~-~~-~~~~~tf~RGyir~yA~~lgv~~~~L~~~~~~ 85 (331)
T PRK10856 18 RLRQAREQLGLTQQAVAERLCLKVSTV--RDIE---EDK-AP-ADLASTFLRGYIRSYARLVHIPEEELLPGLEK 85 (331)
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHH--HHHH---CCC-CC-CChhHHHHHHHHHHHHHHHCcCHHHHHHhhhh
Confidence 688999999999988776655422222 2222 110 00 00000001245889999999999999876643
No 68
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=28.68 E-value=45 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.5
Q ss_pred ecCHHHHHHHHhhcCCCHHHH
Q psy17056 205 VRNTEVVVLISELLRVKKETL 225 (251)
Q Consensus 205 v~~~~~l~~vA~LLgv~~~~L 225 (251)
..+.+.+..+|..|||+++.|
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHC
Confidence 345678999999999999875
No 69
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=28.53 E-value=59 Score=19.24 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCHHHHHHhHhhc
Q psy17056 211 VVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+..+|.+|||+...|.+..-.-
T Consensus 3 ~~e~a~~lgvs~~tl~~~~~~g 24 (49)
T cd04762 3 TKEAAELLGVSPSTLRRWVKEG 24 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHHcC
Confidence 4678999999999998876543
No 70
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=27.74 E-value=64 Score=18.64 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHhhcCCCHHHHHHhHhh
Q psy17056 212 VLISELLRVKKETLLAALTA 231 (251)
Q Consensus 212 ~~vA~LLgv~~~~L~~aLt~ 231 (251)
+.+|+.||+..|.+.+.|..
T Consensus 6 ~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 6 QDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp HHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHH
Confidence 56899999999999888763
No 71
>PF13309 HTH_22: HTH domain
Probab=27.02 E-value=58 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCCHHHHHHhH
Q psy17056 209 EVVVLISELLRVKKETLLAAL 229 (251)
Q Consensus 209 ~~l~~vA~LLgv~~~~L~~aL 229 (251)
.+++.+|+.|||+...+.+.|
T Consensus 43 gav~~vA~~L~iS~~TVY~YL 63 (64)
T PF13309_consen 43 GAVEYVAEKLGISRATVYRYL 63 (64)
T ss_pred cHHHHHHHHHCCCHHHHHHHc
Confidence 358999999999999887765
No 72
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=26.72 E-value=2e+02 Score=22.42 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhh---cceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 171 KQRRLFAVLSAVLLL---GNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 171 e~~~I~~iLaaILhL---GNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
....+++-+.-++.+ -||-+.... ....++.+|..+...+.+||++.++-.+++++
T Consensus 91 ~r~~~~~~~~~l~~~~~~~~iiiSSgA-----~~~~elr~P~dv~~l~~~lGl~~~~a~~avs~ 149 (150)
T PF01876_consen 91 NRRNFISNARRLIRLTKKKNIIISSGA-----SSPLELRSPRDVINLLALLGLSEEEAKKAVST 149 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH--EEEE--------SSGGG---HHHHHHHHHHTT--HHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCC-----CChhhCcCHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 334444444444433 356665432 33467899999999999999999999998875
No 73
>PHA02591 hypothetical protein; Provisional
Probab=26.60 E-value=66 Score=22.76 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHhhcCCCHHHHHHhHh
Q psy17056 211 VVLISELLRVKKETLLAALT 230 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt 230 (251)
.+.+|.+|||+.+...+.|-
T Consensus 62 qeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 62 VEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 67899999999998887663
No 74
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=26.14 E-value=53 Score=21.86 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhh-h--cceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHH
Q psy17056 160 QSMEMVGFTQEKQRRLFAVLSAVLL-L--GNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 225 (251)
Q Consensus 160 ~Al~~lG~~~~e~~~I~~iLaaILh-L--GNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L 225 (251)
++=...|++-+++....+|=.-.|. | |+.+.-+ . .+--...+...|.+||+|++.|
T Consensus 4 ~~R~~~glsl~~va~~t~I~~~~l~aiE~~~~~~lp--------~--~~y~rg~lr~Ya~~Lgld~~~l 62 (62)
T PF13413_consen 4 EAREAKGLSLEDVAEETKISVSYLEAIENGDFDSLP--------S--PVYARGYLRKYARFLGLDPDEL 62 (62)
T ss_dssp HHHHCTT--HHHHHHHCS--HHHHHHHHCT-GCCSS--------S--HHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHCcChhhCC--------c--HHHHHHHHHHHHHHhCcCcccC
Confidence 3344456666666665555444442 2 2222111 0 1112356899999999999875
No 75
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=25.71 E-value=1.6e+02 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFAVLSAV 182 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~iLaaI 182 (251)
..+.+||+.+|++++.+..++..+..+
T Consensus 87 ~~~~~al~~~~v~~~~~~~~~~~~~~~ 113 (120)
T PF01152_consen 87 ELLKQALDELGVPEELIDELLARLESL 113 (120)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 347789999999999999998887764
No 76
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=25.57 E-value=73 Score=19.17 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCHHHHHHhH
Q psy17056 211 VVLISELLRVKKETLLAAL 229 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aL 229 (251)
+..+|.+|||+...|.+=|
T Consensus 21 ~~~aA~~Lgisr~tL~~kl 39 (42)
T PF02954_consen 21 VSKAARLLGISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 6789999999999887643
No 77
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.45 E-value=67 Score=19.40 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=16.5
Q ss_pred HHHHHhhcCCCHHHHHHhHh
Q psy17056 211 VVLISELLRVKKETLLAALT 230 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt 230 (251)
+..+|+++||++..|....-
T Consensus 3 ~~e~a~~~gv~~~tlr~~~~ 22 (49)
T cd04761 3 IGELAKLTGVSPSTLRYYER 22 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999987643
No 78
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=25.24 E-value=62 Score=21.42 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.0
Q ss_pred ecCHHHHHHH----HhhcCCCHHHHHHhH
Q psy17056 205 VRNTEVVVLI----SELLRVKKETLLAAL 229 (251)
Q Consensus 205 v~~~~~l~~v----A~LLgv~~~~L~~aL 229 (251)
+.||+.++.+ |.|+||+.++....+
T Consensus 10 v~nPevl~kl~~g~asLIGv~~~e~~aIi 38 (57)
T PF05952_consen 10 VQNPEVLEKLKEGEASLIGVDKDEQKAII 38 (57)
T ss_pred HHChHHHHHHHcCCeeEecCCHHHHHHHH
Confidence 4567776655 679999998766544
No 79
>PF04458 DUF505: Protein of unknown function (DUF505); InterPro: IPR007548 This is a family of uncharacterised prokaryotic proteins.
Probab=25.09 E-value=41 Score=32.77 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 174 RLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 174 ~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
-+++||.||-..|+..-...+ +.+ -+...+.+..++|++++.+.++|..
T Consensus 519 ~~~rVL~Ai~~~g~lyvKe~K--------vRi-~pk~~ke~~K~sgL~~e~f~kaL~~ 567 (591)
T PF04458_consen 519 TIYRVLKAIREVGTLYVKEKK--------VRI-LPKNIKEAIKLSGLTPEEFKKALEV 567 (591)
T ss_pred HHHHHHHHHHHhhhhhhhhhh--------hhc-CccchHHHHHhcCCCHHHHHHHHHH
Confidence 689999999999997654332 111 2344556779999999999999974
No 80
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=24.17 E-value=1.4e+02 Score=19.01 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFAV 178 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~i 178 (251)
.++..+|..+|++.+++..||+.
T Consensus 19 ~el~~~l~~~g~~~~~~~~i~~~ 41 (67)
T cd00052 19 DEARPFLGKSGLPRSVLAQIWDL 41 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36778888889988888888754
No 81
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=23.96 E-value=3e+02 Score=20.20 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHH-HHHHHHHcCCCHHHHHHHH-HHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHh
Q psy17056 153 YEFSR-LQQSMEMVGFTQEKQRRLF-AVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALT 230 (251)
Q Consensus 153 ~~f~~-l~~Al~~lG~~~~e~~~I~-~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt 230 (251)
+.|.+ -...|+--|++++|++.|. +=+.+.+++|..-| .+.+.|..+|++-.++..+.|
T Consensus 22 erF~~D~ea~~~e~gLt~Ee~~av~~rD~~~li~~G~n~y-------------------~L~K~a~~~G~~~~~~~a~m~ 82 (94)
T cd07923 22 ERFLEDPEALFDEAGLTEEERTLIRNRDWIGMIRYGVIFF-------------------VLEKLAAVVGVSNLHVYAAMR 82 (94)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHcchHHHHHHccCcHH-------------------HHHHHHHHcCCCHHHHHHHhh
Confidence 34433 5567888999999998775 23455667754322 356666666666666555544
No 82
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=23.91 E-value=63 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=24.1
Q ss_pred hhchHHHHhcCcccCCCC-------------CCCCccceEEEEeCC
Q psy17056 7 KEKNKIHAFGNAKTAHNN-------------NSSRFGKFIQVNYKE 39 (251)
Q Consensus 7 ~~n~iLEaFGnAkT~~N~-------------nSSRfgk~~~l~f~~ 39 (251)
.+|-||+-|..--++..+ .+..=|.|+.|.|+.
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~ 63 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDN 63 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESS
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCC
Confidence 567788888777777776 356678999999986
No 83
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=23.81 E-value=70 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCCHHHHHHh---HhhceEEcCCeEEEEe
Q psy17056 209 EVVVLISELLRVKKETLLAA---LTAKHARASDETLVIN 244 (251)
Q Consensus 209 ~~l~~vA~LLgv~~~~L~~a---Lt~r~~~~~ge~i~~~ 244 (251)
+.+..+|.-+|++.++|.++ +........|+.+.+|
T Consensus 5 dtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip 43 (44)
T TIGR02899 5 DTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIP 43 (44)
T ss_pred CCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecC
Confidence 45778999999999988664 2222334456666654
No 84
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=22.27 E-value=78 Score=24.04 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 167 FTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 167 ~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
++.++...+++.+..|-+- |..+...-...+..+|.+||++.+++..
T Consensus 91 ~~~~~r~~ll~~l~~ia~A--------------DG~~~~~E~~~l~~ia~~L~i~~~~~~~ 137 (140)
T PF05099_consen 91 LSPEEREDLLRMLIAIAYA--------------DGEISPEEQEFLRRIAEALGISEEDFQR 137 (140)
T ss_dssp --HHHHHHHHHHHHHHCTC--------------TTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred hchHHHHHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence 3466666776666666543 1112333356799999999999988764
No 85
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=22.20 E-value=1.3e+02 Score=23.15 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=32.7
Q ss_pred eeEeeeeecccccccccCCCCcceeEEeeeccCCChhHHhhc
Q psy17056 45 GAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSL 86 (251)
Q Consensus 45 ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~~~~~l 86 (251)
|-+...+-++-.||-...+..---||.-.+++|-+++.|+.+
T Consensus 39 ~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l 80 (126)
T PRK15031 39 GIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEV 80 (126)
T ss_pred ccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHH
Confidence 456667777777886655555667999999999999998775
No 86
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=21.99 E-value=2.2e+02 Score=21.73 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
++..+.+..|++..+......|=.. ++++++ . + ....+.+.+..+|..|||+++.|..
T Consensus 9 rlk~~R~~~gltq~~lA~~~gvs~~--~is~~E---~------g--~~~p~~~~l~~la~~l~vs~~~l~~ 66 (135)
T PRK09706 9 RIRYRRKQLKLSQRSLAKAVKVSHV--SISQWE---R------D--ETEPTGKNLFALAKALQCSPTWLLF 66 (135)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH---c------C--CCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 6777788888888876655432211 122221 1 1 1234567799999999999988753
No 87
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.60 E-value=1e+02 Score=19.24 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCHHHHHHhHhhc
Q psy17056 211 VVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+..+|.++||+...+.++|-.+
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~ 23 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGP 23 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHhCC
Confidence 5679999999999999999765
No 88
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=21.37 E-value=1.4e+02 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.2
Q ss_pred ccceEEEEeCCCCcEeeeEee
Q psy17056 29 FGKFIQVNYKENGMVHGAVVQ 49 (251)
Q Consensus 29 fgk~~~l~f~~~g~l~ga~i~ 49 (251)
.+-=+-+.||..|+++|--|.
T Consensus 27 ~~~~iild~d~~G~ivGIEIl 47 (50)
T PF10049_consen 27 LDDGIILDYDEDGRIVGIEIL 47 (50)
T ss_pred ecCCEEEEECCCCCEEEEEEE
Confidence 333577899999999997764
No 89
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=20.80 E-value=2.9e+02 Score=18.97 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHH-hhh-cceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAV-LLL-GNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHAR 235 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaI-LhL-GNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~ 235 (251)
+..+..++++...-+++..|| |+- |- + .+.++|+++|++..++...|-.+-+.
T Consensus 7 ~~~l~~~~~e~~~~~r~~~Ai~lY~~g~---------------i------S~gkAAelag~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 7 LQALRLTPDEFEQELREELAIKLYEEGK---------------I------SLGKAAELAGMSRWEFLELLKERGIP 61 (76)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCC---------------C------CHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 455567888777666666665 431 22 1 37789999999999999999887654
No 90
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=3.3e+02 Score=24.94 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcc--eEEeecCCCCCCCcceeecCHHH-HHHHHhhcCCCHHHHHHhHh
Q psy17056 154 EFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGN--VEFVPRKSAYHHDESVTVRNTEV-VVLISELLRVKKETLLAALT 230 (251)
Q Consensus 154 ~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGN--I~F~~~~~~~~~~~~~~v~~~~~-l~~vA~LLgv~~~~L~~aLt 230 (251)
-+.+..-.|..+|++++++.-+....---=..|. +-|+-. |... -.+-++|+|.+...+.++|.
T Consensus 323 ~~krie~~M~~~G~t~eDRkVv~~A~~k~E~tg~pa~A~elp-------------dG~iiTGK~SeL~g~~aA~ilNalK 389 (493)
T COG4868 323 AVKRIELLMNDLGLTPEDRKVVVFARQKAELTGQPALAFELP-------------DGKIITGKTSELFGPTAAAILNALK 389 (493)
T ss_pred HHHHHHHHHhhcCCChhcchhhhHhHHHHHhcCCCceEEEcC-------------CCceeeccchhhcCccHHHHHHHHH
Confidence 3667777899999999887644332222223333 344322 2111 12445677777777766665
Q ss_pred h
Q psy17056 231 A 231 (251)
Q Consensus 231 ~ 231 (251)
+
T Consensus 390 ~ 390 (493)
T COG4868 390 Y 390 (493)
T ss_pred H
Confidence 4
No 91
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=20.34 E-value=85 Score=19.59 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy17056 169 QEKQRRLFAVLSAVLLLG 186 (251)
Q Consensus 169 ~~e~~~I~~iLaaILhLG 186 (251)
..++..+..++++||++-
T Consensus 21 ~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 21 PSEREQLLPVIATLLKFS 38 (46)
T ss_dssp ---HHHHHHHHHHHTT--
T ss_pred hhhHHHHHHHHHHHHCCC
Confidence 356778999999999874
No 92
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=20.29 E-value=74 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.8
Q ss_pred CHHHHHHHHhhcCCCHHHH
Q psy17056 207 NTEVVVLISELLRVKKETL 225 (251)
Q Consensus 207 ~~~~l~~vA~LLgv~~~~L 225 (251)
+.+.+..+++.||++++.|
T Consensus 38 ~~~~~~~i~~~~~~~~~~~ 56 (56)
T smart00530 38 SLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHHHHhCCChhhC
Confidence 5677999999999998753
No 93
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=20.21 E-value=97 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCHHHHHHhHhhc
Q psy17056 211 VVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~r 232 (251)
-..+|.+|||....+.++|...
T Consensus 15 Q~kaA~~lGV~Q~AIsKAlr~g 36 (59)
T PF09048_consen 15 QAKAARALGVTQSAISKALRAG 36 (59)
T ss_dssp HHHHHHHHTS-HHHHHHHHHCT
T ss_pred hHHHHHHcCCcHHHHHHHHHcC
Confidence 3578999999999999999864
Done!