Query psy17056
Match_columns 251
No_of_seqs 188 out of 1158
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.6E-66 5.5E-71 501.5 13.2 208 2-250 133-345 (697)
2 1w7j_A Myosin VA; motor protei 100.0 1.1E-65 3.9E-70 501.5 13.4 203 2-250 193-396 (795)
3 1kk8_A Myosin heavy chain, str 100.0 5.5E-65 1.9E-69 498.9 13.9 203 2-250 216-419 (837)
4 4db1_A Myosin-7; S1DC, cardiac 100.0 1.2E-64 4.2E-69 492.6 13.7 203 2-250 217-420 (783)
5 1w9i_A Myosin II heavy chain; 100.0 3.1E-64 1.1E-68 488.6 13.9 202 2-250 212-414 (770)
6 2v26_A Myosin VI; calmodulin-b 100.0 2.2E-64 7.7E-69 492.2 12.9 234 1-250 174-412 (784)
7 1g8x_A Myosin II heavy chain f 100.0 7.8E-64 2.7E-68 499.9 13.8 203 2-250 212-414 (1010)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 6.2E-64 2.1E-68 504.1 12.6 204 1-250 192-396 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 2.9E-63 1E-67 495.9 15.5 203 1-250 189-391 (995)
10 4anj_A Unconventional myosin-V 100.0 2.1E-63 7.1E-68 495.9 12.2 234 1-250 178-416 (1052)
11 1i84_S Smooth muscle myosin he 100.0 1.7E-62 5.9E-67 500.6 9.7 203 2-250 220-422 (1184)
12 4anj_A Unconventional myosin-V 75.7 2.8 9.7E-05 42.3 5.1 85 89-174 293-388 (1052)
13 2v26_A Myosin VI; calmodulin-b 75.7 2.4 8.1E-05 41.5 4.4 72 103-174 302-384 (784)
14 1w7j_A Myosin VA; motor protei 74.4 2.3 7.8E-05 41.7 3.9 56 119-174 310-373 (795)
15 1lkx_A Myosin IE heavy chain; 73.3 3 0.0001 40.2 4.5 56 119-174 251-318 (697)
16 4db1_A Myosin-7; S1DC, cardiac 73.3 2.7 9.1E-05 41.1 4.1 109 119-232 334-450 (783)
17 1kk8_A Myosin heavy chain, str 70.5 3.3 0.00011 40.8 4.0 109 118-231 332-448 (837)
18 2dfs_A Myosin-5A; myosin-V, in 69.1 4 0.00014 41.4 4.4 63 109-174 303-373 (1080)
19 2h5n_A Hypothetical protein PG 65.2 21 0.00073 26.4 6.9 23 207-229 105-127 (133)
20 1g8x_A Myosin II heavy chain f 64.8 5.7 0.0002 40.0 4.5 109 119-232 329-444 (1010)
21 1i84_S Smooth muscle myosin he 61.8 7.9 0.00027 39.6 5.0 55 119-173 336-398 (1184)
22 1w9i_A Myosin II heavy chain; 61.7 5.8 0.0002 38.7 3.8 108 119-231 329-443 (770)
23 2ycu_A Non muscle myosin 2C, a 60.5 5.4 0.00019 40.1 3.5 110 118-232 304-421 (995)
24 1adr_A P22 C2 repressor; trans 46.4 52 0.0018 20.6 6.2 58 157-227 9-66 (76)
25 3t76_A VANU, transcriptional r 46.3 9.3 0.00032 26.3 1.8 58 155-226 26-83 (88)
26 2ou3_A Tellurite resistance pr 44.9 76 0.0026 24.0 7.2 22 208-229 116-137 (161)
27 3f6w_A XRE-family like protein 44.3 62 0.0021 20.9 7.4 62 157-231 18-79 (83)
28 2r1j_L Repressor protein C2; p 40.9 60 0.002 19.7 7.2 58 157-227 9-66 (68)
29 2jxu_A TERB, KP-TERB; tellurit 36.2 42 0.0014 25.1 4.3 53 158-225 96-149 (153)
30 1sfu_A 34L protein; protein/Z- 36.0 46 0.0016 22.3 3.9 54 172-245 11-64 (75)
31 3fym_A Putative uncharacterize 35.4 42 0.0014 24.5 4.1 65 157-232 7-75 (130)
32 4h62_K Mediator of RNA polymer 33.7 38 0.0013 19.0 2.6 22 163-184 10-31 (40)
33 2kpj_A SOS-response transcript 32.2 1E+02 0.0035 20.5 5.5 59 157-228 13-71 (94)
34 3e1s_A Exodeoxyribonuclease V, 32.2 9.8 0.00034 35.6 0.1 78 142-230 42-119 (574)
35 2ewt_A BLDD, putative DNA-bind 32.0 69 0.0024 19.8 4.3 56 157-225 12-69 (71)
36 3vk0_A NHTF, transcriptional r 31.5 54 0.0019 23.0 4.1 58 157-227 25-82 (114)
37 3bs3_A Putative DNA-binding pr 31.2 93 0.0032 19.4 5.0 57 157-226 14-70 (76)
38 3op9_A PLI0006 protein; struct 31.2 46 0.0016 23.2 3.6 58 157-227 13-70 (114)
39 1wn4_A Vontr protein; helix, p 30.9 15 0.00052 19.5 0.7 8 6-13 5-12 (28)
40 1ufm_A COP9 complex subunit 4; 29.2 39 0.0013 23.0 2.7 21 211-231 33-53 (84)
41 2k9q_A Uncharacterized protein 28.5 1.1E+02 0.0039 19.2 6.2 59 157-228 6-64 (77)
42 3f52_A CLP gene regulator (CLG 27.2 71 0.0024 22.3 4.1 59 157-228 32-90 (117)
43 1ixs_A Holliday junction DNA h 25.8 85 0.0029 20.0 3.8 22 156-177 18-39 (62)
44 2xi8_A Putative transcription 25.5 55 0.0019 19.8 2.8 20 207-226 42-61 (66)
45 2pmy_A RAS and EF-hand domain- 25.1 1.5E+02 0.005 19.3 6.0 25 155-179 46-70 (91)
46 3kz3_A Repressor protein CI; f 23.6 23 0.00079 23.1 0.7 26 206-231 52-77 (80)
47 4fp9_B Mterf domain-containing 23.6 95 0.0033 26.8 4.9 26 153-178 44-69 (335)
48 1sfx_A Conserved hypothetical 23.5 1.6E+02 0.0056 19.4 6.4 50 156-230 7-56 (109)
49 3qq6_A HTH-type transcriptiona 22.9 56 0.0019 21.2 2.6 22 206-227 51-72 (78)
50 3b7h_A Prophage LP1 protein 11 22.5 58 0.002 20.6 2.6 21 206-226 48-68 (78)
51 1b0n_B Protein (SINI protein); 22.4 1.3E+02 0.0045 18.9 4.1 24 154-177 14-37 (57)
52 1e0g_A Membrane-bound lytic mu 21.0 46 0.0016 19.1 1.7 43 204-246 6-48 (48)
53 1j9i_A GPNU1 DBD;, terminase s 21.0 64 0.0022 20.4 2.5 21 211-231 5-25 (68)
54 1wvl_A DNA-binding proteins 7A 20.9 63 0.0022 21.0 2.3 17 28-44 25-41 (80)
55 1qjt_A EH1, epidermal growth f 20.8 91 0.0031 21.3 3.5 22 157-178 32-53 (99)
56 2yh9_A Small protein A, BAME p 20.7 1.6E+02 0.0053 19.8 4.6 49 9-59 20-82 (88)
57 2b5a_A C.BCLI; helix-turn-heli 20.2 79 0.0027 19.8 2.9 23 206-228 50-72 (77)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-66 Score=501.49 Aligned_cols=208 Identities=29% Similarity=0.547 Sum_probs=186.2
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++++..|||||||||||||+|||||||||||++|+|+.+|.|+||+|++|||||||||.|++||||||||||||+|++++
T Consensus 133 ~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~ 212 (697)
T 1lkx_A 133 SKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQS 212 (697)
T ss_dssp HHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHH
T ss_pred HHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC-CccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLK-KIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~-~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++++|+|. ++.+|+||++++|..+++++|..+|. .+++
T Consensus 213 ~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~-----------------------------------------~~~~ 251 (697)
T 1lkx_A 213 KLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFK-----------------------------------------IIVK 251 (697)
T ss_dssp HHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHH-----------------------------------------HHHH
T ss_pred HHHHhcCCCChhhCccccCCCCcccCCCchHHHHH-----------------------------------------HHHH
Confidence 99999998 89999999999888888887765554 9999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcC---
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARAS--- 237 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~--- 237 (251)
||++|||+++|+..||+|||||||||||+|.......++.+.+.+.+++.++.+|.||||++++|.++||+|++.++
T Consensus 252 Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~ 331 (697)
T 1lkx_A 252 AMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGK 331 (697)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC-------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCC
Confidence 99999999999999999999999999999987322111235688999999999999999999999999999999999
Q ss_pred -CeEEEEeCCcccC
Q psy17056 238 -DETLVINYRLPEV 250 (251)
Q Consensus 238 -ge~i~~~~~~~eA 250 (251)
||.+.+|++++||
T Consensus 332 ~~e~i~~~l~~~qA 345 (697)
T 1lkx_A 332 RCSVISVPMDCNQA 345 (697)
T ss_dssp ---CCCCBCCHHHH
T ss_pred CCCeEEecCCHHHH
Confidence 9999999999987
No 2
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.1e-65 Score=501.51 Aligned_cols=203 Identities=31% Similarity=0.529 Sum_probs=190.1
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++++..|||||||||||||+|||||||||||++|+||.+|.|+||+|++|||||||||.|++||||||||||||+|++++
T Consensus 193 e~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlag~~~~ 272 (795)
T 1w7j_A 193 EEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALP 272 (795)
T ss_dssp HHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHTTTSG
T ss_pred HHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccceEeccCCCCCchHhHHHHHcCCCHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
++++|+|.++.+|+||++++|..+++++|..+|. .+++|
T Consensus 273 ~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~-----------------------------------------~~~~A 311 (795)
T 1w7j_A 273 EFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMV-----------------------------------------NTRQA 311 (795)
T ss_dssp GGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHH-----------------------------------------HHHHH
T ss_pred HHHHccCCChHhCccccCCCCCcCCCccHHHHHH-----------------------------------------HHHHH
Confidence 9999999999999999999988788887765554 99999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceee-cCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTV-RNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v-~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
|++|||+++|+..||+|||||||||||+|...+. +.+.+ .+.+.++.+|.||||++++|.++||+|++.++||.
T Consensus 312 m~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~-----~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~ 386 (795)
T 1w7j_A 312 CTLLGISDSYQMGIFRILAGILHLGNVEFASRDS-----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATET 386 (795)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEET-----TEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCE
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccCceEeecCC-----cceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCce
Confidence 9999999999999999999999999999987532 33444 78889999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+|++++||
T Consensus 387 v~~~~~~~qA 396 (795)
T 1w7j_A 387 YIKPISKLHA 396 (795)
T ss_dssp EEEECCHHHH
T ss_pred ecCCCCHHHH
Confidence 9999999987
No 3
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.5e-65 Score=498.90 Aligned_cols=203 Identities=31% Similarity=0.536 Sum_probs=183.1
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++++..|||||||||||||+|||||||||||++|+||.+|.|+||+|++|||||||||.|++||||||||||||+|++++
T Consensus 216 e~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~ 295 (837)
T 1kk8_A 216 EDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPE 295 (837)
T ss_dssp HHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGG
T ss_pred HHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-CCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHL-KKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L-~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++++|+| .++.+|+||+++. ..+++++|..+ |..+++
T Consensus 296 ~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~-----------------------------------------f~~~~~ 333 (837)
T 1kk8_A 296 LNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEE-----------------------------------------FKLCDE 333 (837)
T ss_dssp GHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHH-----------------------------------------HHHHHH
T ss_pred HHHHhCCCCChhhcccccCCC-cccCCcChHHH-----------------------------------------HHHHHH
Confidence 9999999 7899999999854 55667766555 459999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|+.+||+|||||||||||+|..... ++.+.+.+.+.++.+|.||||++++|.++||+|+++++||.
T Consensus 334 Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~ 409 (837)
T 1kk8_A 334 AFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPR----EEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEM 409 (837)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC--------CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----C
T ss_pred HHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCC----CCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCce
Confidence 99999999999999999999999999999987532 34567889999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+|++++||
T Consensus 410 v~~~~~~~qA 419 (837)
T 1kk8_A 410 VTKGQNMNQV 419 (837)
T ss_dssp EECCCCHHHH
T ss_pred EEeCCCHHHH
Confidence 9999999987
No 4
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.2e-64 Score=492.58 Aligned_cols=203 Identities=28% Similarity=0.498 Sum_probs=182.5
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
+++++.|||||||||||||+|||||||||||++|+||.+|.|+||+|++|||||||||.|++||||||||||||+|++++
T Consensus 217 e~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~ 296 (783)
T 4db1_A 217 EDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPE 296 (783)
T ss_dssp HHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHH
T ss_pred HHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC-CccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLK-KIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~-~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+|+.|+|. ++.+|+||+++ +..+++++|..+| ..+++
T Consensus 297 ~~~~l~L~~~~~~y~yl~~g-~~~~~~~dD~~~f-----------------------------------------~~~~~ 334 (783)
T 4db1_A 297 LLDMLLITNNPYDYAFISQG-ETTVASIDDAEEL-----------------------------------------MATDN 334 (783)
T ss_dssp HHHHTTCCSCGGGCGGGCSS-CCCCTTCCHHHHH-----------------------------------------HHHHH
T ss_pred HHHHhccCCCHHHCccccCC-CcccCCCCcHHHH-----------------------------------------HHHHH
Confidence 99999994 78999999985 4566777766555 48999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|+..||+|||||||||||+|..... ++.+.+.+.+.++.+|.||||++++|.++||+|++++++|.
T Consensus 335 Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~ 410 (783)
T 4db1_A 335 AFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQR----EEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEY 410 (783)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTT----SSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC------C
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCC----CcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCee
Confidence 99999999999999999999999999999987542 44678899999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
++++++++||
T Consensus 411 v~~~~~~~qA 420 (783)
T 4db1_A 411 VTKGQNVQQV 420 (783)
T ss_dssp CCCCCCHHHH
T ss_pred EeeCCCHHHH
Confidence 9999999987
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=3.1e-64 Score=488.56 Aligned_cols=202 Identities=36% Similarity=0.618 Sum_probs=187.6
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++++..|||||||||||||+|||||||||||++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|++++
T Consensus 212 e~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~ 291 (770)
T 1w9i_A 212 EQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAE 291 (770)
T ss_dssp HHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcccccc-ccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHY-LNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 82 ~~~~l~L~~~~~y~y-L~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+|++|+|.++.+|+| |++ ++..+++++|..+| ..+++
T Consensus 292 ~~~~l~L~~~~~y~yll~~-g~~~~~~~dD~~~f-----------------------------------------~~~~~ 329 (770)
T 1w9i_A 292 EKKALHLAGPESFNYLNQS-GCVDIKGVSDSEEF-----------------------------------------KITRQ 329 (770)
T ss_dssp HHHHHTCCCGGGCTTTSSS-SCCCCTTCCHHHHH-----------------------------------------HHHHH
T ss_pred HHHHhCCCChhhccccccC-CccccCCCchHHHH-----------------------------------------HHHHH
Confidence 999999999999999 665 55667777765554 49999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|+..||+|||||||||||+|.. . +++.+.+.+.+.++.+|.||||++++|.++||+|++.++||.
T Consensus 330 Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~-~----~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~ 404 (770)
T 1w9i_A 330 AMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK-G----AGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404 (770)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEE-C----SSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEE
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCceEec-C----CCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCee
Confidence 99999999999999999999999999999983 2 244577889999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+|++++||
T Consensus 405 v~~~~~~~qA 414 (770)
T 1w9i_A 405 VAQHLNVEKS 414 (770)
T ss_dssp EECCCCHHHH
T ss_pred EEeCCCHHHH
Confidence 9999999987
No 6
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.2e-64 Score=492.22 Aligned_cols=234 Identities=34% Similarity=0.559 Sum_probs=187.3
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++++..|||||||||||||+|||||||||||++|+|+.+|.|+||+|++|||||||||.|++||||||||||||+|+++
T Consensus 174 ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~ 253 (784)
T 2v26_A 174 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASE 253 (784)
T ss_dssp --CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSBHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcchhhHHHHcCCCH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++|++|+|.++.+|+||+++.+....+.+... .+..+ ..++ .....++...++++|..+|..+++
T Consensus 254 ~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~---~i~~~----~~s~--------~~~~~~~~~~~~~dD~~~f~~~~~ 318 (784)
T 2v26_A 254 DIRERLHLSSPDNFRYLNRGCTRYFANKETDK---QILQN----RKSP--------EYLKAGSLKDPLLDDHGDFIRMCT 318 (784)
T ss_dssp HHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHT---TSCGG----GCCH--------HHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred HHHHHcCCCChhhCccccCCCccccccccccc---ccccc----cccc--------ccccccccCCCCCCHHHHHHHHHH
Confidence 99999999999999999986532211100000 00000 0000 001124455678889999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEE-----
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHAR----- 235 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~----- 235 (251)
||++|||+++|+.+||+|||||||||||+|...+.. .+.+.+...+.+.++.+|.||||++++|.++||+|++.
T Consensus 319 Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~-~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~ 397 (784)
T 2v26_A 319 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGG 397 (784)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTT-TSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCC-CCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccC
Confidence 999999999999999999999999999999874321 11233344578899999999999999999999999998
Q ss_pred cCCeEEEEeCCcccC
Q psy17056 236 ASDETLVINYRLPEV 250 (251)
Q Consensus 236 ~~ge~i~~~~~~~eA 250 (251)
++||.+++|++++||
T Consensus 398 ~~ge~i~~~l~~~qA 412 (784)
T 2v26_A 398 AKGTVIKVPLKVEQA 412 (784)
T ss_dssp -----CEEECCHHHH
T ss_pred CCCCeEeecCCHHHH
Confidence 679999999999987
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=7.8e-64 Score=499.85 Aligned_cols=203 Identities=37% Similarity=0.635 Sum_probs=191.4
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||+|||||||||||++|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+|++++
T Consensus 212 e~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~ 291 (1010)
T 1g8x_A 212 EQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAE 291 (1010)
T ss_dssp HHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
++..|+|.++.+|+||++++|..+++++|..+|. .+++|
T Consensus 292 ~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~-----------------------------------------~~~~A 330 (1010)
T 1g8x_A 292 EKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK-----------------------------------------ITRQA 330 (1010)
T ss_dssp HHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHH-----------------------------------------HHHHH
T ss_pred HHHHhCCCChHhcchhcCCCccccCCCChHHHHH-----------------------------------------HHHHH
Confidence 9999999999999999999988888887765554 99999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|++|||+++|+..||+|||||||||||+|..... +.+.+.+.+.++.+|.||||++++|.++||+|++.++||.+
T Consensus 331 ~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-----~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v 405 (1010)
T 1g8x_A 331 MDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-----EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLV 405 (1010)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-----SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEE
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-----CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeE
Confidence 9999999999999999999999999999986531 45678899999999999999999999999999999999999
Q ss_pred EEeCCcccC
Q psy17056 242 VINYRLPEV 250 (251)
Q Consensus 242 ~~~~~~~eA 250 (251)
.+|++++||
T Consensus 406 ~~~~~~~qa 414 (1010)
T 1g8x_A 406 AQHLNVEKS 414 (1010)
T ss_dssp ECCCCSHHH
T ss_pred EeCCCHHHH
Confidence 999999987
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=6.2e-64 Score=504.06 Aligned_cols=204 Identities=31% Similarity=0.529 Sum_probs=186.7
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++.+..|||||||||||||++||||||||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++
T Consensus 192 ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsRVv~q~~~ERnfHIFYqllag~~~ 271 (1080)
T 2dfs_A 192 VEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAAL 271 (1080)
T ss_dssp THHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGGGTCCCTTCCSBHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCceeeccCCCCCcchhHHHHHcCCCh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
++++.|+|.++.+|+||++++|..+++++|..+|. .++.
T Consensus 272 ~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~-----------------------------------------~~~~ 310 (1080)
T 2dfs_A 272 PEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMV-----------------------------------------NTRQ 310 (1080)
T ss_dssp SGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHH-----------------------------------------HHHH
T ss_pred HHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHH-----------------------------------------HHHH
Confidence 99999999999999999999988888887765554 9999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceee-cCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCe
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTV-RNTEVVVLISELLRVKKETLLAALTAKHARASDE 239 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v-~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge 239 (251)
||++|||+++|+.+||+|||||||||||+|...+. +.+.+ .+++.++.+|.||||++++|.++||+|++.++||
T Consensus 311 A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e 385 (1080)
T 2dfs_A 311 ACTLLGISDSYQMGIFRILAGILHLGNVEFASRDS-----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATE 385 (1080)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETT-----TEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCC-----cceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCc
Confidence 99999999999999999999999999999986532 23444 7888999999999999999999999999999999
Q ss_pred EEEEeCCcccC
Q psy17056 240 TLVINYRLPEV 250 (251)
Q Consensus 240 ~i~~~~~~~eA 250 (251)
.+.+|++++||
T Consensus 386 ~i~~~~~~~qa 396 (1080)
T 2dfs_A 386 TYIKPISKLHA 396 (1080)
T ss_dssp -EEEECCHHHH
T ss_pred eEEeCCCHHHH
Confidence 99999999987
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.9e-63 Score=495.93 Aligned_cols=203 Identities=29% Similarity=0.498 Sum_probs=188.4
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
+++++..|||||||||||||+|||||||||||++|+|+.+|.|+||+|++|||||||||.|++||||||||||||+|+++
T Consensus 189 ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~ 268 (995)
T 2ycu_A 189 LERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGE 268 (995)
T ss_dssp CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeeeccCCCCCcchhHHHHHcCCCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+++++|+|.++.+|+||++++ ..+++ +|..+ |..++.
T Consensus 269 ~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~-----------------------------------------f~~~~~ 305 (995)
T 2ycu_A 269 QLKADLLLEPCSHYRFLTNGP-SSSPG-QEREL-----------------------------------------FQETLE 305 (995)
T ss_dssp HHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHH-----------------------------------------HHHHHH
T ss_pred HHHHHcCCCChHHcccccCCc-cccCC-cHHHH-----------------------------------------HHHHHH
Confidence 999999999999999999865 44555 55544 559999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeE
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~ 240 (251)
||++|||+++|+..||+|||||||||||+|..... ++.+.+.+.+.++.+|.||||++++|.++||+|+++++||.
T Consensus 306 A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 381 (995)
T 2ycu_A 306 SLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERN----TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDY 381 (995)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSS----SCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSE
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCC----CcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCce
Confidence 99999999999999999999999999999987542 34577889999999999999999999999999999999999
Q ss_pred EEEeCCcccC
Q psy17056 241 LVINYRLPEV 250 (251)
Q Consensus 241 i~~~~~~~eA 250 (251)
+.+|++++||
T Consensus 382 v~~~~~~~qa 391 (995)
T 2ycu_A 382 VQKAQTKEQA 391 (995)
T ss_dssp EECCCCHHHH
T ss_pred ecCCCCHHHH
Confidence 9999999987
No 10
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=2.1e-63 Score=495.87 Aligned_cols=234 Identities=33% Similarity=0.559 Sum_probs=189.2
Q ss_pred ChhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCCh
Q psy17056 1 MKKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASD 80 (251)
Q Consensus 1 ~~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~ 80 (251)
++++++.|||||||||||||++||||||||||++|+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++
T Consensus 178 ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaGa~~ 257 (1052)
T 4anj_A 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASE 257 (1052)
T ss_dssp CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTCCSBHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCCCCcccHHHHhcCCCH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHH
Q psy17056 81 QDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQ 160 (251)
Q Consensus 81 ~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~ 160 (251)
+++++|+|.++.+|+||+++.+....+............ + .....+++...+++||..+|..++.
T Consensus 258 ~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 258 DIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRK-------S--------PEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp HHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGC-------C--------HHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred HHHHHcCCCChHhCchhcCCCccccccccchhhhccccc-------c--------hhhccCCCccCCCcchHHHHHHHHH
Confidence 999999999999999999865433222111000000000 0 0012346677889999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEE-----
Q psy17056 161 SMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHAR----- 235 (251)
Q Consensus 161 Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~----- 235 (251)
||++|||+++|+..||+|||||||||||+|.+.+.. ++.+.+.+.+.+.++.+|.||||++++|.++||+|++.
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~-~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~ 401 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGG 401 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC--------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCC-CCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccc
Confidence 999999999999999999999999999999875432 23445667788999999999999999999999998874
Q ss_pred cCCeEEEEeCCcccC
Q psy17056 236 ASDETLVINYRLPEV 250 (251)
Q Consensus 236 ~~ge~i~~~~~~~eA 250 (251)
++||.+.+|++++||
T Consensus 402 ~~~e~i~~~l~~~qA 416 (1052)
T 4anj_A 402 AKGTVIKVPLKVEQA 416 (1052)
T ss_dssp ------CEECCHHHH
T ss_pred cCceEEEecCCHHHH
Confidence 689999999999987
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.7e-62 Score=500.61 Aligned_cols=203 Identities=31% Similarity=0.565 Sum_probs=188.4
Q ss_pred hhhhhhhchHHHHhcCcccCCCCCCCCccceEEEEeCCCCcEeeeEeeeeecccccccccCCCCcceeEEeeeccCCChh
Q psy17056 2 KKVKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQ 81 (251)
Q Consensus 2 ~~~~~~~n~iLEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~l~ga~i~~ylLEksRV~~q~~gErnfHiFY~ll~g~~~~ 81 (251)
++.+..|||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|++++
T Consensus 220 ~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~ 299 (1184)
T 1i84_S 220 EKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQ 299 (1184)
T ss_dssp HHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhCCCCccCCcchHHHHHHHHHH
Q psy17056 82 DRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQS 161 (251)
Q Consensus 82 ~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~l~~A 161 (251)
++..|+|.++.+|+||+++. ..+++++|..+| ..++.|
T Consensus 300 ~~~~l~l~~~~~~~yl~~~~-~~~~~~~d~~~f-----------------------------------------~~~~~a 337 (1184)
T 1i84_S 300 MRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMF-----------------------------------------QETLEA 337 (1184)
T ss_dssp HHHHTTCCCTTSCSSCTTSS-CCCTTCCHHHHH-----------------------------------------HHHHHH
T ss_pred HHHHcCCCChHhCCccCCCC-cCCCCCChHHHH-----------------------------------------HHHHHH
Confidence 99999999999999999754 466777766554 499999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEE
Q psy17056 162 MEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241 (251)
Q Consensus 162 l~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i 241 (251)
|++|||+++++..||+|||||||||||+|..... ++.+.+.+.+.++.+|.||||++++|.++||+|++.+++|.+
T Consensus 338 ~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~----~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~ 413 (1184)
T 1i84_S 338 MTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERN----TDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVV 413 (1184)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTT----TSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCC
T ss_pred HHhceeCHHHHHHHHHHHHHHHhhcCceeeccCC----CcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceE
Confidence 9999999999999999999999999999986532 345678899999999999999999999999999999999999
Q ss_pred EEeCCcccC
Q psy17056 242 VINYRLPEV 250 (251)
Q Consensus 242 ~~~~~~~eA 250 (251)
.+|++++||
T Consensus 414 ~~~~~~~~a 422 (1184)
T 1i84_S 414 QKAQTKEQA 422 (1184)
T ss_dssp CCCCCHHHH
T ss_pred ecCCCHHHH
Confidence 999999987
No 12
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=75.74 E-value=2.8 Score=42.30 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=63.5
Q ss_pred CCccccccccCCCCcccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCc---c-----hHHHHHH
Q psy17056 89 KKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV---D-----EKYEFSR 157 (251)
Q Consensus 89 ~~~~~y~yL~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~---~-----~~~~f~~ 157 (251)
.+...+.|+. ++|..++++||..+|..+..||+++||+++++..+|++|+++ |+..+... + +......
T Consensus 293 ~~~~~~~~~~-~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~ 371 (1052)
T 4anj_A 293 QNRKSPEYLK-AGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQA 371 (1052)
T ss_dssp GGGCCHHHHH-HCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHH
T ss_pred ccccchhhcc-CCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHH
Confidence 3344455654 467788999999999999999999999999999999999997 33333111 1 1123456
Q ss_pred HHHHHHHcCCCHHHHHH
Q psy17056 158 LQQSMEMVGFTQEKQRR 174 (251)
Q Consensus 158 l~~Al~~lG~~~~e~~~ 174 (251)
+..+.+.||++.++...
T Consensus 372 l~~~a~LLgv~~~~L~~ 388 (1052)
T 4anj_A 372 LEYCAELLGLDQDDLRV 388 (1052)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 78889999999987543
No 13
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=75.65 E-value=2.4 Score=41.53 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=55.0
Q ss_pred cccCCCchHHHhHHhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCc---c-----hHHHHHHHHHHHHHcCCCHHH
Q psy17056 103 YTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV---D-----EKYEFSRLQQSMEMVGFTQEK 171 (251)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~---~-----~~~~f~~l~~Al~~lG~~~~e 171 (251)
...+++||..+|..+..||+.+||+++++..+|++++++ |+..+... + +...-..+..+...||++.++
T Consensus 302 ~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~ 381 (784)
T 2v26_A 302 LKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDD 381 (784)
T ss_dssp BCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHH
Confidence 456789999999999999999999999999999999987 44333111 0 011245688899999999987
Q ss_pred HHH
Q psy17056 172 QRR 174 (251)
Q Consensus 172 ~~~ 174 (251)
...
T Consensus 382 L~~ 384 (784)
T 2v26_A 382 LRV 384 (784)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 14
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=74.37 E-value=2.3 Score=41.68 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=39.3
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc-h-H---HHHHHHHHHHHHcCCCHHHHHH
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD-E-K---YEFSRLQQSMEMVGFTQEKQRR 174 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~-~-~---~~f~~l~~Al~~lG~~~~e~~~ 174 (251)
.||+.+||+++++..+|++++++ |+..+...+ + . ..-..+..+...||++.++...
T Consensus 310 ~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~ 373 (795)
T 1w7j_A 310 QACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAH 373 (795)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHH
Confidence 47999999999999999999987 443331111 0 0 1123677888999999987543
No 15
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=73.34 E-value=3 Score=40.18 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=40.0
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCC-----cc-h---HHHHHHHHHHHHHcCCCHHHHHH
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDN-----VD-E---KYEFSRLQQSMEMVGFTQEKQRR 174 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~-----~~-~---~~~f~~l~~Al~~lG~~~~e~~~ 174 (251)
.||+.+||+++++..+|++++++ |+..+.. .+ + -.+-..+..+...||++.++...
T Consensus 251 ~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 318 (697)
T 1lkx_A 251 KAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSI 318 (697)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHH
Confidence 47999999999999999999987 4443321 00 1 01234688889999999987543
No 16
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=73.27 E-value=2.7 Score=41.14 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=59.1
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc--h---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEE
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD--E---KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEF 190 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~--~---~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F 190 (251)
.||+.+||+++++..+|++++++ |+..+.... + ...-..+..+...||++.++....+- .-.+..|+-..
T Consensus 334 ~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~--~~~i~~~~e~v 411 (783)
T 4db1_A 334 NAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLC--HPRVKVGNEYV 411 (783)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHH--SCC------CC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhc--ceEEEeCCeeE
Confidence 58999999999999999999997 443321100 0 01123577889999999987544221 01112233111
Q ss_pred eecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 191 VPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
.. . ....++....|.-+-...+.|+.+=.+.+-.+|..+
T Consensus 412 ~~-~--~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~ 450 (783)
T 4db1_A 412 TK-G--QNVQQVIYATGALAKAVYERMFNWMVTRINATLETK 450 (783)
T ss_dssp CC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred ee-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 10 0 000111112222233456677777777777777654
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=70.47 E-value=3.3 Score=40.85 Aligned_cols=109 Identities=14% Similarity=0.264 Sum_probs=58.7
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc--hH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceE
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD--EK---YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVE 189 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~--~~---~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~ 189 (251)
..||+.+||+++++..+|++++++ |+..+.... +. ..-..+..+...||++.++....+ +.-.+..|+ +
T Consensus 332 ~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL--~~~~~~~~~-e 408 (837)
T 1kk8_A 332 DEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKAL--LKPKVKVGT-E 408 (837)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHH--HSCEEC-----
T ss_pred HHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHh--cCcEEEcCC-c
Confidence 478999999999999999999987 444332110 00 112367888999999998754322 000111232 1
Q ss_pred EeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 190 FVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 190 F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
+.... ....++....|.-+-...+.|+..=.+.+-.+|..
T Consensus 409 ~v~~~--~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~ 448 (837)
T 1kk8_A 409 MVTKG--QNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 448 (837)
T ss_dssp CEECC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eEEeC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11110 00011111222223345667777777777777763
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.13 E-value=4 Score=41.41 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=42.6
Q ss_pred chHHHhHHhhhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcch--H---HHHHHHHHHHHHcCCCHHHHHH
Q psy17056 109 DEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVDE--K---YEFSRLQQSMEMVGFTQEKQRR 174 (251)
Q Consensus 109 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~~--~---~~f~~l~~Al~~lG~~~~e~~~ 174 (251)
.+-..+. .||+.+||+++++..+|++++++ |+..+...+. . ..-..+..+...||++.++...
T Consensus 303 ~~f~~~~---~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~ 373 (1080)
T 2dfs_A 303 KEMVNTR---QACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAH 373 (1080)
T ss_dssp HHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHH
Confidence 3444444 47999999999999999999987 4443321110 0 1123677888999999987543
No 19
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=65.24 E-value=21 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=18.1
Q ss_pred CHHHHHHHHhhcCCCHHHHHHhH
Q psy17056 207 NTEVVVLISELLRVKKETLLAAL 229 (251)
Q Consensus 207 ~~~~l~~vA~LLgv~~~~L~~aL 229 (251)
....+..+|.+||+++.++..+.
T Consensus 105 E~~lLr~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 105 ELALWTLISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHHHHHHHTCCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 34579999999999998875443
No 20
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=64.84 E-value=5.7 Score=39.96 Aligned_cols=109 Identities=19% Similarity=0.322 Sum_probs=61.3
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc-hH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEe
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD-EK---YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~-~~---~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~ 191 (251)
.||+++||+++++..+|++++++ |+..+.... +. ..-..+..+...||++.++....+ +.-.+..|+=...
T Consensus 329 ~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l--~~~~~~~~~e~v~ 406 (1010)
T 1g8x_A 329 QAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKAL--MEPRILAGRDLVA 406 (1010)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTTSSCBCSCCHHHHHHHHHHTSCHHHHHHHH--HSCEEESSSSEEE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCCCccccCChHHHHHHHHHHCCCHHHHHHHH--hCcEEEeCCeeEE
Confidence 47999999999999999999987 544332111 10 112367788999999998754321 0001112321111
Q ss_pred ecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
. . ....++....|.-+-...+.|+..=.+.+-.+|..+
T Consensus 407 ~-~--~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~ 444 (1010)
T 1g8x_A 407 Q-H--LNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSE 444 (1010)
T ss_dssp C-C--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred e-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 0 001111122223334566777777777777777654
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.76 E-value=7.9 Score=39.57 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=39.6
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc--hH---HHHHHHHHHHHHcCCCHHHHH
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD--EK---YEFSRLQQSMEMVGFTQEKQR 173 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~--~~---~~f~~l~~Al~~lG~~~~e~~ 173 (251)
.||+++||+++++..+|++++++ |+..+.... +. ..-..+..+...||++.++..
T Consensus 336 ~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~ 398 (1184)
T 1i84_S 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFT 398 (1184)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHH
T ss_pred HHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHH
Confidence 58999999999999999999987 444332110 00 112367888999999998754
No 22
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=61.69 E-value=5.8 Score=38.70 Aligned_cols=108 Identities=20% Similarity=0.339 Sum_probs=59.1
Q ss_pred hhhhhcCccHHHHHHHHHHHhhC---CCCccCCc-ch---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEe
Q psy17056 119 QSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNV-DE---KYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191 (251)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~-~~---~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~ 191 (251)
.||+++||+++++..+|++++++ |+..+... ++ ...-..+..+...||++.++....+ +.-.+..|+= +.
T Consensus 329 ~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL--~~~~~~~~~e-~v 405 (770)
T 1w9i_A 329 QAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKAL--MEPRILAGRD-LV 405 (770)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHH--HSCEEEETTE-EE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcCceEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHh--hCcEEEeCCe-eE
Confidence 58999999999999999999987 44333200 00 0112357888999999998754321 0001112321 11
Q ss_pred ecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
...- ...++....|.-+-...+.|+.+=.+.+-.+|..
T Consensus 406 ~~~~--~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~ 443 (770)
T 1w9i_A 406 AQHL--NVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQ 443 (770)
T ss_dssp ECCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1110 0011111222223445667777777777777764
No 23
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=60.53 E-value=5.4 Score=40.06 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=60.2
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhC---CCCccCCcc--hH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceE
Q psy17056 118 QQSMEMVGFTQEKQRRLFAVLSAS---GPYTLDNVD--EK---YEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVE 189 (251)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~l~~~---~~~~~~~~~--~~---~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~ 189 (251)
..||+++||+++++..+|++++++ |+..+.... +. ..-..+..+...||++.++....+ +.-.+..|+=
T Consensus 304 ~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l--~~~~~~~~~e- 380 (995)
T 2ycu_A 304 LESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRAL--LTPRIKVGRD- 380 (995)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHH--HSCEEESSSS-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHh--cCcEEEcCCc-
Confidence 468999999999999999999987 333321110 00 112367888999999998754321 0001112321
Q ss_pred EeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 190 FVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 190 F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+....- ...++....|.-+-...+.|+..=.+.+-.+|.++
T Consensus 381 ~v~~~~--~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~ 421 (995)
T 2ycu_A 381 YVQKAQ--TKEQADFALEALAKATYERLFRWLVLRLNRALDRS 421 (995)
T ss_dssp EEECCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eecCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111100 00111112222234456677777777777777643
No 24
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.36 E-value=52 Score=20.61 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
++..+++..|++..+......+=.. .+.+++ .+ . ...+.+.+..+|..|||+++.|..
T Consensus 9 ~l~~~r~~~gls~~~lA~~~gis~~--~i~~~e---~g------~--~~~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 9 RIRARRKKLKIRQAALGKMVGVSNV--AISQWE---RS------E--TEPNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH---TT------S--SCCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH---cC------C--CCCCHHHHHHHHHHHCcCHHHHhc
Confidence 5666777778887776544422111 111111 01 1 123567899999999999998864
No 25
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=46.32 E-value=9.3 Score=26.30 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHH
Q psy17056 155 FSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 155 f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~ 226 (251)
+.++...++..|++..++.....|=-.- +.+++ .+. .+ +.+.+..+|..|||++++|.
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~GiS~~t--is~iE---------~G~--~~-s~~~l~kIa~~L~v~~~~L~ 83 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVGVSKST--FAKLG---------KNE--NV-SLTVLLAICEYLNCDFGDII 83 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHTCCHHH--HHHHH---------TTC--CC-CHHHHHHHHHHHTCCGGGTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHH--HHHHH---------cCC--Cc-CHHHHHHHHHHHCcCHHHHh
Confidence 4478888888899988876554321111 11111 111 12 67889999999999998874
No 26
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=44.91 E-value=76 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHhH
Q psy17056 208 TEVVVLISELLRVKKETLLAAL 229 (251)
Q Consensus 208 ~~~l~~vA~LLgv~~~~L~~aL 229 (251)
...+..+|.+||+++.++....
T Consensus 116 ~~~L~~iA~~Lgls~~~~~~l~ 137 (161)
T 2ou3_A 116 KAKIRKMATILGIKEEIVDQLE 137 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 3569999999999999887643
No 27
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=44.34 E-value=62 Score=20.86 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
.+..+.+..|++..+......+=. =.+.+++ . +. ...+.+.+..+|..|||+++.|...+..
T Consensus 18 ~l~~~R~~~gltq~elA~~~gis~--~~is~~e---~------g~--~~~~~~~l~~l~~~l~~~~~~l~~~~~~ 79 (83)
T 3f6w_A 18 LLLEARSAAGITQKELAARLGRPQ--SFVSKTE---N------AE--RRLDVIEFMDFCRGIGTDPYALLSKLEA 79 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCH--HHHHHHH---T------TS--SCCCHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH---C------CC--CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 567777788999887665543211 1112221 1 11 1245678999999999999999876654
No 28
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=40.86 E-value=60 Score=19.72 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
++...++..|++..+......+=.. .+.+++ . +. ...+.+.+..+|..|||+++.|..
T Consensus 9 ~l~~~r~~~g~s~~~lA~~~gis~~--~i~~~e---~------g~--~~~~~~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVGVSNV--AISQWE---R------SE--TEPNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH---T------TS--SCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHH--HHHHHH---c------CC--CCCCHHHHHHHHHHhCCCHHHHhc
Confidence 5666677778887765544321111 111111 0 11 123567799999999999998853
No 29
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=36.20 E-value=42 Score=25.07 Aligned_cols=53 Identities=17% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhh-cceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHH
Q psy17056 158 LQQSMEMVGFTQEKQRRLFAVLSAVLLL-GNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 225 (251)
Q Consensus 158 l~~Al~~lG~~~~e~~~I~~iLaaILhL-GNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L 225 (251)
+...+..++-.+++...++.++..|-+- |. +.......+..+|.+||+++.++
T Consensus 96 ~~~~i~~~~~~~~~~~~~l~~~~~vA~ADG~---------------~~~~E~~~L~~ia~~Lgl~~~~~ 149 (153)
T 2jxu_A 96 TMKYILALKDQPEAAQLALRVGIAVAKSDGN---------------FDDDEKSAVREIARSLGFDPAEF 149 (153)
T ss_dssp HHHHHHCCSSSHHHHHHHHHHHHHHHTTTTS---------------CSSTHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHHhCcCHHHH
Confidence 4444434544666666666665555432 22 22223457999999999997654
No 30
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=35.96 E-value=46 Score=22.33 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEEEEeC
Q psy17056 172 QRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINY 245 (251)
Q Consensus 172 ~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i~~~~ 245 (251)
++.--.++.+|.|||.=+ .. .+..+|.=||++.....++|..= .-.|-..+.|-
T Consensus 11 ~~~~~~v~~~i~~L~~~~------------~~------Ta~~IAkkLg~sK~~vNr~LY~L--~kkG~V~~~~~ 64 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTND------------YT------TAISLSNRLKINKKKINQQLYKL--QKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHHHTSCTTC------------EE------CHHHHHHHTTCCHHHHHHHHHHH--HHTTSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCc------------ch------HHHHHHHHHCCCHHHHHHHHHHH--HHCCCEecCCC
Confidence 333345778888998511 12 27789999999999988888742 23444444443
No 31
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=35.44 E-value=42 Score=24.48 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCH----HHHHHHHhhcCCCHHHHHHhHhhc
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNT----EVVVLISELLRVKKETLLAALTAK 232 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~----~~l~~vA~LLgv~~~~L~~aLt~r 232 (251)
+++++-+..|++.+|...-..+=- =++.+++ .+ ......++ +.+..+|+.|||++++|.......
T Consensus 7 ~lr~~R~~~gltq~elA~~~gis~--~~is~iE---~g------~~~~~~~~~~~~~~l~~ia~~L~v~~~~l~~~~~~~ 75 (130)
T 3fym_A 7 ALKGRRERLGMTLTELEQRTGIKR--EMLVHIE---NN------EFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDE 75 (130)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCH--HHHHHHH---TT------CGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH---CC------CCCCCchhhhHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 566666777888887665543211 1223332 11 10001112 569999999999999998876543
No 32
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=33.67 E-value=38 Score=19.00 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHhh
Q psy17056 163 EMVGFTQEKQRRLFAVLSAVLL 184 (251)
Q Consensus 163 ~~lG~~~~e~~~I~~iLaaILh 184 (251)
+.+|-..+...+-+.+|+|||-
T Consensus 10 kalgqdtekmeeqldllsaild 31 (40)
T 4h62_K 10 KALGQDTEKMEEQLDLLSAILD 31 (40)
T ss_pred HhhcccHHHHHHHHHHHHHHcC
Confidence 3467777777888899999984
No 33
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=32.24 E-value=1e+02 Score=20.48 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHh
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAA 228 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~a 228 (251)
++...++..|++..+......|=..- +.+++ .+ . ...+.+.+..+|..|||+.+.|...
T Consensus 13 ~lk~~r~~~glsq~~lA~~~gis~~~--is~~e---~G------~--~~p~~~~l~~ia~~l~v~~~~l~~~ 71 (94)
T 2kpj_A 13 NLNSYIAKSEKTQLEIAKSIGVSPQT--FNTWC---KG------I--AIPRMGKVQALADYFNINKSDLIED 71 (94)
T ss_dssp HHHHHHTTSSSCHHHHHHHHTCCHHH--HHHHH---TT------S--CCCCHHHHHHHHHHHTCCTHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHH--HHHHH---hC------C--CCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 57777777888887765543221111 11111 11 1 1235678999999999999998643
No 34
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=32.23 E-value=9.8 Score=35.62 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=41.0
Q ss_pred CCCccCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCC
Q psy17056 142 GPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVK 221 (251)
Q Consensus 142 ~~~~~~~~~~~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~ 221 (251)
+||.+ ..-....|.........+|+..+ +-.|+-|+|+|.=+-+....+ .+.+.-.+.++.++.||+++
T Consensus 42 nPy~l-~~i~gigf~~aD~ia~~~g~~~~---~~~R~~a~~~~~l~~~~~~~G-------ht~~~~~~l~~~~~~~l~~~ 110 (574)
T 3e1s_A 42 DLFTL-TEVEGIGFLTADKLWQARGGALD---DPRRLTAAAVYALQLAGTQAG-------HSFLPRSRAEKGVVHYTRVT 110 (574)
T ss_dssp --CGG-GTSSSCCHHHHHTTC-------C---CHHHHHHHHHHHHHHHHHHTC-------CSCEEHHHHHHHHHHHHCCC
T ss_pred CCccc-CCcCCCCHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHHHHHHHCC-------CEeecHHHHHHHHHHHhCCC
Confidence 45655 11122346666555566788654 566788888765311211111 12355567789999999999
Q ss_pred HHHHHHhHh
Q psy17056 222 KETLLAALT 230 (251)
Q Consensus 222 ~~~L~~aLt 230 (251)
.+.+..+|.
T Consensus 111 ~~~~~~~~~ 119 (574)
T 3e1s_A 111 PGQARLAVE 119 (574)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987777665
No 35
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=31.97 E-value=69 Score=19.76 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHH--HHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFA--VLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 225 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~--iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L 225 (251)
++....+..|++..+...... +=. =.+.+++ .+ . ...+.+.+..+|..|||+++.|
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g~~is~--~~i~~~e---~g------~--~~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKA--VVVGSYE---RG------D--RAVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCH--HHHHHHH---HT------C--SCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHCCcCCH--HHHHHHH---CC------C--CCCCHHHHHHHHHHHCcCHHHH
Confidence 566777778888877654432 100 0111211 11 0 1245678999999999998775
No 36
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=31.47 E-value=54 Score=22.97 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
+++.+.+..|++..+......+=- =.+.+++ . +. ...+.+.+..+|..|||+.+.|..
T Consensus 25 ~lr~~R~~~gltq~elA~~~gis~--~~is~~E---~------G~--~~p~~~~l~~ia~~l~v~~~~l~~ 82 (114)
T 3vk0_A 25 NMRLFRVNKGWSQEELARQCGLDR--TYVSAVE---R------KR--WNIALSNIEKMAAALGVAAYQLLL 82 (114)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCH--HHHHHHT---T------TC--CCCCHHHHHHHHHHHTSCHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH---c------CC--CCCCHHHHHHHHHHhCCCHHHHhC
Confidence 577777888998887665542211 1122222 1 11 124568899999999999998853
No 37
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=31.23 E-value=93 Score=19.37 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~ 226 (251)
++...++..|++..+......+=..- +.+++ .+ . ...+.+.+..+|..|||+++.|.
T Consensus 14 ~l~~~r~~~g~s~~~lA~~~gis~~~--i~~~e---~g------~--~~~~~~~l~~ia~~l~~~~~~l~ 70 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENT--ISRWC---SN------K--SQPSLDMLVKVAELLNVDPRQLI 70 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHH--HHHHH---TT------S--SCCCHHHHHHHHHHHTSCGGGGB
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHH--HHHHH---cC------C--CCCCHHHHHHHHHHHCcCHHHHh
Confidence 46666777778777655443211110 01111 01 1 12356789999999999988763
No 38
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=31.21 E-value=46 Score=23.22 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
++....+..|++..+......+=. =.+++++ . +. ...+.+.+..+|..|||+++.|..
T Consensus 13 ~l~~~r~~~glsq~~lA~~~gis~--~~i~~~e---~------g~--~~p~~~~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 13 NLSRLKKEHGLKNHQIAELLNVQT--RTVAYYM---S------GE--TKPDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCH--HHHHHHH---H------TS--SCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH---c------CC--CCCCHHHHHHHHHHhCCCHHHHhc
Confidence 677777778888877654432211 1112211 0 11 124577899999999999998864
No 39
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=30.91 E-value=15 Score=19.53 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=6.2
Q ss_pred hhhchHHH
Q psy17056 6 KKEKNKIH 13 (251)
Q Consensus 6 ~~~n~iLE 13 (251)
..+||+||
T Consensus 5 ~~sNplLE 12 (28)
T 1wn4_A 5 QKPNHLLE 12 (28)
T ss_dssp SSTTHHHH
T ss_pred ccccHHHH
Confidence 36899987
No 40
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.19 E-value=39 Score=23.03 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCHHHHHHhHhh
Q psy17056 211 VVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~ 231 (251)
++.+|++|++++++.++.|..
T Consensus 33 l~~La~ll~ls~~~vE~~ls~ 53 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQ 53 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 889999999999988876653
No 41
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.48 E-value=1.1e+02 Score=19.24 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHh
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAA 228 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~a 228 (251)
+++..++..|++..+......|=.. .+.+++ .+ . ...+.+.+..+|..|||+.+.|..-
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis~~--~i~~~e---~g------~--~~p~~~~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGISRQ--QLCNIE---QS------E--TAPVVVKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH---TC------C--SCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH---cC------C--CCCCHHHHHHHHHHhCcCHHHHhCc
Confidence 5666677778887775544321111 111111 01 1 1134567999999999999998654
No 42
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=27.24 E-value=71 Score=22.27 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHh
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAA 228 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~a 228 (251)
++....+..|++..+......+= -=++.+++ . +. ...+.+.+..+|..|||++++|...
T Consensus 32 ~l~~~R~~~glsq~~lA~~~gis--~~~is~~E---~------g~--~~~~~~~l~~la~~l~v~~~~l~~~ 90 (117)
T 3f52_A 32 ALRSFRADKGVTLRELAEASRVS--PGYLSELE---R------GR--KEVSSELLASVCHALGASVADVLIE 90 (117)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSC--HHHHHHHH---T------TS--SCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC--HHHHHHHH---C------CC--CCCCHHHHHHHHHHhCCCHHHHHhc
Confidence 56666777788887765443221 11122222 1 11 1345688999999999999887653
No 43
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=25.82 E-value=85 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFA 177 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~ 177 (251)
.+...||..|||+..|...+.+
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~ 39 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVL 39 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3789999999999988765543
No 44
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=25.47 E-value=55 Score=19.78 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.3
Q ss_pred CHHHHHHHHhhcCCCHHHHH
Q psy17056 207 NTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 207 ~~~~l~~vA~LLgv~~~~L~ 226 (251)
+.+.+..+|..|||+++.|.
T Consensus 42 ~~~~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 42 SLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp CHHHHHHHHHHTTSCHHHHE
T ss_pred CHHHHHHHHHHHCcCHHHHh
Confidence 56789999999999998874
No 45
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.09 E-value=1.5e+02 Score=19.34 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17056 155 FSRLQQSMEMVGFTQEKQRRLFAVL 179 (251)
Q Consensus 155 f~~l~~Al~~lG~~~~e~~~I~~iL 179 (251)
..++..+|..+|++.+++..+|+.+
T Consensus 46 ~~El~~~l~~~g~~~~~~~~~~~~~ 70 (91)
T 2pmy_A 46 REEFRALCTELRVRPADAEAVFQRL 70 (91)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHh
Confidence 3467788888999988887777543
No 46
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=23.60 E-value=23 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.0
Q ss_pred cCHHHHHHHHhhcCCCHHHHHHhHhh
Q psy17056 206 RNTEVVVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 206 ~~~~~l~~vA~LLgv~~~~L~~aLt~ 231 (251)
.+.+.+..+|..|||++++|...|..
T Consensus 52 ~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 52 LNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp CCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 35678999999999999988766653
No 47
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=23.57 E-value=95 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17056 153 YEFSRLQQSMEMVGFTQEKQRRLFAV 178 (251)
Q Consensus 153 ~~f~~l~~Al~~lG~~~~e~~~I~~i 178 (251)
.+|....+.|..+||++.++..++..
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~ 69 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSV 69 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 35778888888999999887665543
No 48
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=23.48 E-value=1.6e+02 Score=19.38 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcceEEeecCCCCCCCcceeecCHHHHHHHHhhcCCCHHHHHHhHh
Q psy17056 156 SRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALT 230 (251)
Q Consensus 156 ~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGNI~F~~~~~~~~~~~~~~v~~~~~l~~vA~LLgv~~~~L~~aLt 230 (251)
..+...++.+|+++.+. .||..+..-|.+ ....+|+.+|++...+.+.|.
T Consensus 7 ~~~~~~l~~~~l~~~~~----~il~~l~~~~~~---------------------s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 7 GELVKALEKLSFKPSDV----RIYSLLLERGGM---------------------RVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHTCCCHHHH----HHHHHHHHHCCB---------------------CHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH----HHHHHHHHcCCC---------------------CHHHHHHHHCCCHHHHHHHHH
Confidence 36677788999998653 344333322221 156678888999988777654
No 49
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.87 E-value=56 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.8
Q ss_pred cCHHHHHHHHhhcCCCHHHHHH
Q psy17056 206 RNTEVVVLISELLRVKKETLLA 227 (251)
Q Consensus 206 ~~~~~l~~vA~LLgv~~~~L~~ 227 (251)
.+.+.+..+|..|||+.+.|..
T Consensus 51 p~~~~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 51 PSIQFLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp CBHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhC
Confidence 4567899999999999998865
No 50
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.52 E-value=58 Score=20.57 Aligned_cols=21 Identities=5% Similarity=0.127 Sum_probs=18.0
Q ss_pred cCHHHHHHHHhhcCCCHHHHH
Q psy17056 206 RNTEVVVLISELLRVKKETLL 226 (251)
Q Consensus 206 ~~~~~l~~vA~LLgv~~~~L~ 226 (251)
.+.+.+..+|..|||+++.|.
T Consensus 48 ~~~~~l~~ia~~l~~~~~~l~ 68 (78)
T 3b7h_A 48 PTITTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp CCHHHHHHHHHHHTCCHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHh
Confidence 456789999999999999885
No 51
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=22.44 E-value=1.3e+02 Score=18.88 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Q psy17056 154 EFSRLQQSMEMVGFTQEKQRRLFA 177 (251)
Q Consensus 154 ~f~~l~~Al~~lG~~~~e~~~I~~ 177 (251)
++-.+....+.+||+-+|+..++.
T Consensus 14 ewl~LI~~Ak~lGlsleEIrefL~ 37 (57)
T 1b0n_B 14 EWVELMVEAKEANISPEEIRKYLL 37 (57)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455778888999999999887763
No 52
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=21.03 E-value=46 Score=19.13 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=29.3
Q ss_pred eecCHHHHHHHHhhcCCCHHHHHHhHhhceEEcCCeEEEEeCC
Q psy17056 204 TVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 246 (251)
Q Consensus 204 ~v~~~~~l~~vA~LLgv~~~~L~~aLt~r~~~~~ge~i~~~~~ 246 (251)
.|...+.+..+|.-+|++.++|.++=-.......|..+.+|.+
T Consensus 6 ~V~~GDtl~~Ia~~~~~~~~~l~~~N~~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 6 RVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK 48 (48)
T ss_dssp EECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCCC
T ss_pred EEcCCCcHHHHHHHHCcCHHHHHHhCCCCCcCCcCCEEEEecC
Confidence 4555567888999999999999774322222346777777753
No 53
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.01 E-value=64 Score=20.44 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=17.3
Q ss_pred HHHHHhhcCCCHHHHHHhHhh
Q psy17056 211 VVLISELLRVKKETLLAALTA 231 (251)
Q Consensus 211 l~~vA~LLgv~~~~L~~aLt~ 231 (251)
...+|.+|||+...|.+..-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467999999999999886653
No 54
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=20.90 E-value=63 Score=20.98 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=14.5
Q ss_pred CccceEEEEeCCCCcEe
Q psy17056 28 RFGKFIQVNYKENGMVH 44 (251)
Q Consensus 28 Rfgk~~~l~f~~~g~l~ 44 (251)
|.||++...||.+|+--
T Consensus 25 rvgkmvsftyddngktg 41 (80)
T 1wvl_A 25 RVGKMVSFTYDDNGKTG 41 (80)
T ss_dssp EETTEEEEEEEETTEEE
T ss_pred hhcceEEEEEcCCCccc
Confidence 78999999999988643
No 55
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.79 E-value=91 Score=21.26 Aligned_cols=22 Identities=5% Similarity=0.147 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q psy17056 157 RLQQSMEMVGFTQEKQRRLFAV 178 (251)
Q Consensus 157 ~l~~Al~~lG~~~~e~~~I~~i 178 (251)
++..+|..+|++.+++..||+.
T Consensus 32 el~~~l~~~~l~~~~l~~i~~~ 53 (99)
T 1qjt_A 32 DAAAFLKKSGLPDLILGKIWDL 53 (99)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 6778888899999998888864
No 56
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=20.73 E-value=1.6e+02 Score=19.82 Aligned_cols=49 Identities=6% Similarity=0.191 Sum_probs=26.2
Q ss_pred chHHHHhcCcccCCCCCCCCc--------------cceEEEEeCCCCcEeeeEeeeeeccccccc
Q psy17056 9 KNKIHAFGNAKTAHNNNSSRF--------------GKFIQVNYKENGMVHGAVVQKYLLEKSRIC 59 (251)
Q Consensus 9 n~iLEaFGnAkT~~N~nSSRf--------------gk~~~l~f~~~g~l~ga~i~~ylLEksRV~ 59 (251)
.-|...+|...+.-.-+..+. -+.+.+.||.+|++.. +..+-|+..++-
T Consensus 20 ~qV~~lLG~P~~~~~f~~~~W~Yv~~~~~g~~~~~~~~l~V~Fd~~g~V~~--~~~~~~~~~~~~ 82 (88)
T 2yh9_A 20 QQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTN--IDNKPALSGNLE 82 (88)
T ss_dssp HHHHHHHCSCSEECCTTCSEEEEECCSCTTCCSSSCCEEEEEECTTSBEEE--EEEEC-------
T ss_pred HHHHHHcCCCcccccccCCeEEEEEEeecCCCCcEEEEEEEEEcCCCeEEE--EEcccCCccccc
Confidence 456777776665432222221 2679999999998774 556666665553
No 57
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.25 E-value=79 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.0
Q ss_pred cCHHHHHHHHhhcCCCHHHHHHh
Q psy17056 206 RNTEVVVLISELLRVKKETLLAA 228 (251)
Q Consensus 206 ~~~~~l~~vA~LLgv~~~~L~~a 228 (251)
.+.+.+..+|..|||+++.|...
T Consensus 50 ~~~~~l~~la~~l~~~~~~l~~~ 72 (77)
T 2b5a_A 50 ISLINIHKICAALDIPASTFFRK 72 (77)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHhcc
Confidence 34677999999999999988653
Done!