RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17056
(251 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 223 bits (571), Expect = 2e-68
Identities = 79/219 (36%), Positives = 121/219 (55%), Gaps = 16/219 (7%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT NNNSSRFGKF+++++ E V G V YLLEKSRIC QG+ ERNYH+FY
Sbjct: 187 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 246
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
L AGAS+ R LHL +++ YLNR N + + + ++S E
Sbjct: 247 LCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEY---------- 296
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
+G +D+ +F R+ +M+ +G E++ LF V++ VL LGN++F
Sbjct: 297 -----LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEA 351
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232
S ++ ++T+ + +ELL + ++ L +LT +
Sbjct: 352 GS-TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 389
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 211 bits (539), Expect = 1e-63
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 45/231 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
+ GNAKT N+NSSRFGK+I++ + + + GA ++ YLLEKSR+ Q ERNYH+FY
Sbjct: 205 SIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQ 264
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
L A A+ + +L L +HY + G +D +D
Sbjct: 265 LCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGID------------------------ 300
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
D K E +Q+ ++G + Q +F +L+ +L LGNVEF R
Sbjct: 301 ----------------DAK-EMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASR 343
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 244
S D + + + +L+ V E + L + + ET +
Sbjct: 344 DS----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKP 390
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 209 bits (534), Expect = 2e-63
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 42/220 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT N+NSSRFGK++++ + G G + YLLEKSR+ + +GER++H+FY
Sbjct: 145 AFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQ 204
Query: 74 LLAGASDQDRHSLHLKK-IESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQR 132
+L G S L L +Y YL +SG + + +D
Sbjct: 205 MLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTID----------------------- 241
Query: 133 RLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVP 192
D EF + ++ME +G + Q ++ +L+A+L +GN+ F
Sbjct: 242 -----------------DSG-EFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAE 283
Query: 193 RKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 232
+V V +T+ + + L+ +++L AL +
Sbjct: 284 AAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYR 323
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 211 bits (539), Expect = 6e-63
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
+ GNAKT N+NSSRFGK+I++ + + + GA ++ YLLEKSR+ Q ERNYH+FY
Sbjct: 205 SIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQ 264
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
L A A+ + +L L +HY + G +D +D
Sbjct: 265 LCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGID------------------------ 300
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
D K E +Q+ ++G + Q +F +L+ +L LGNVEF R
Sbjct: 301 ----------------DAK-EMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASR 343
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPEVL 251
S D + + + +L+ V E + L + + ET + +
Sbjct: 344 DS----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAI 397
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 207 bits (528), Expect = 3e-62
Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 46/231 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT NNNSSRFGKFI++ + G + GA +Q YLLEKSR+ Q ERNYH+FY
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
LLAGA+ +++ +LHL ES++YLN+SG + V
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVS------------------------ 319
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
D + EF +Q+M++VGF+QE+Q +F +++ +L LGN++F
Sbjct: 320 ----------------DSE-EFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 244
E +++ + S + V L AL A + + +
Sbjct: 363 A-----GEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQH 408
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 203 bits (518), Expect = 4e-60
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 47/238 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT N+NSSRFGKFI++N+ G + GA ++ YLLEKSR Q + E ++H+FY
Sbjct: 202 AFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQ 261
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
LL GA +Q + L L+ Y +L
Sbjct: 262 LLGGAGEQLKADLLLEPCSHYRFLTNGP-------------------------------- 289
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
+ E+ F +S+ ++GF+ E+ + ++SAVL GN+
Sbjct: 290 -----------SSSPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRE 338
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPEVL 251
++ + T+ + + LL + AL + + + +
Sbjct: 339 RN----TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQAD 392
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 201 bits (514), Expect = 1e-59
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 46/231 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT NNNSS FGKFI++ + G + GA +Q YLLEKSR+ Q ERNYH+FY
Sbjct: 224 AFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 74 LLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRR 133
LLAGA+ +++ +LHL ES++YLN+SG + V
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVS------------------------ 319
Query: 134 LFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPR 193
DE EF +Q+M++VGF+QE+Q +F +++ +L LGN++F
Sbjct: 320 ----------------DED-EFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 194 KSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 244
E +++ + S + V L AL A + + +
Sbjct: 363 A-----GEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQH 408
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 200 bits (510), Expect = 1e-59
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 47/230 (20%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
AFGNAKT N+NSSRFGKFI++++ G + A ++ YLLEKSR+ Q + ER+YH+FY
Sbjct: 229 AFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQ 288
Query: 74 LLAGASDQDRHSLHLKK-IESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQR 132
+L+ + L + Y ++++
Sbjct: 289 ILSNKKPELLDMLLITNNPYDYAFISQ--------------------------------- 315
Query: 133 RLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVP 192
G T+ ++D+ E + +++GFT E++ ++ + A++ GN++F
Sbjct: 316 ---------GETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKL 366
Query: 193 RKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLV 242
++ +E TE + L+ + LL L + +E +
Sbjct: 367 KQR----EEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVT 412
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 198 bits (506), Expect = 6e-59
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 47/239 (19%)
Query: 14 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVFYY 73
A+GNAKT NNNSSRFGKFI++++ G + GA ++ YLLEKSR+ Q ERNYH+FY
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 74 LLAGASDQDRHSLHLKK-IESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQR 132
+ + A + + + Y ++N
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFIN---------------------------------- 313
Query: 133 RLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVP 192
G T+DN+D+ EF ++ +++GFT+E+++ +F +++L +G ++F
Sbjct: 314 --------QGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQ 365
Query: 193 RKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPEVL 251
R +E T ++ L + LL AL + E + + +V+
Sbjct: 366 RPR----EEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVV 420
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 178 bits (454), Expect = 2e-51
Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 46/240 (19%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ AFGNAKT N+NSSRFGKFI++N+ G + GA ++ YLLEKSR Q + ER +H+F
Sbjct: 230 LEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIF 289
Query: 72 YYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQ 131
YYL+AGAS+Q R+ L L+ +Y +L+
Sbjct: 290 YYLIAGASEQMRNDLLLEGFNNYTFLS--------------------------------- 316
Query: 132 RRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191
+G + + F ++M ++GFT+E+Q + V+S+VL LGN+ F
Sbjct: 317 ---------NGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFK 367
Query: 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPEVL 251
++ + ++ + + L+ + ++ + + + +
Sbjct: 368 KERN----TDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQAD 423
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 7e-05
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 45/184 (24%)
Query: 47 VVQKYLLEKSRICSQGRGERNYHVF-YYLLAGASDQDRHSLHLKKIESY-----HYLNRS 100
VV K L K + + E + YL ++ ++LH ++ Y +
Sbjct: 407 VVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 101 GPYTLDN--------------VDEKY-EFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYT 145
P LD E+ F + F ++K R +ASG
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSIL 521
Query: 146 LDNVD-EKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSA--YHHDES 202
+ Y+ + + + +++A+L +F+P+ +
Sbjct: 522 NTLQQLKFYK-----------PYICDNDPKYERLVNAIL-----DFLPKIEENLICSKYT 565
Query: 203 VTVR 206
+R
Sbjct: 566 DLLR 569
Score = 34.4 bits (78), Expect = 0.038
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 55/189 (29%)
Query: 106 DNVDEKYEFSRLQQSMEMVGFTQEKQRRLFA-----------------------VLSAS- 141
D + + + + T ++ + L +++ S
Sbjct: 279 DFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 142 --GPYTLDNVDEKYEFSRLQQSMEMV--GFTQEKQRRLF--------------AVLSAVL 183
G T DN + +L +E + R++F +LS ++
Sbjct: 338 RDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LI 395
Query: 184 LLGNVEFVPRKSAYH-HDESVTVRNTE--VVVLISELLRVKKETLLAALTAKHARASDET 240
++ H S+ + + + + S L +K + L A H
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--LENEYALHRS----- 448
Query: 241 LVINYRLPE 249
+V +Y +P+
Sbjct: 449 IVDHYNIPK 457
Score = 30.2 bits (67), Expect = 0.72
Identities = 41/287 (14%), Positives = 89/287 (31%), Gaps = 78/287 (27%)
Query: 4 VKKKEKNKIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGR 63
+ K++ + F + N I+ ++ M+ + Y+ ++ R+ + +
Sbjct: 71 LLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMT----RMYIEQRDRLYNDNQ 124
Query: 64 GERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRSGPY------------TLDNVDEK 111
Y+V R +LK ++ L R + +
Sbjct: 125 VFAKYNV-----------SRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWV--ALDV 170
Query: 112 YEFSRLQQSMEM------VGFTQ------EKQRRLFAVLSASGPYTLDNVDEKYEFSRLQ 159
++Q M+ + E ++L + + D+ S ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH------SSNIK 224
Query: 160 QSMEMVGFTQEKQRRLFAVLS---AVLLLGNVEFVPRKSAYHHDES----VTVRNTEVVV 212
+ + Q + RRL +L+L NV+ K+ + S +T R +V
Sbjct: 225 LRIHSI---QAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 213 LISELLR--VKKETLLAALTAKHARASDETL-----VINYR---LPE 249
+S + + LT DE ++ R LP
Sbjct: 280 FLSAATTTHISLDHHSMTLT------PDEVKSLLLKYLDCRPQDLPR 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.053
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 56/164 (34%)
Query: 86 LHLKKIESY-HYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGP- 143
L ++++ Y + N P ++ E S L + V SGP
Sbjct: 344 LTQEQVQDYVNKTNSHLP-----AGKQVEIS-LVNG-----------AKNLVV---SGPP 383
Query: 144 ---YTLDNVDEKYEF-SRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFVPRKSAYHH 199
Y L+ K + S L QS + F++ K L + F+P S +H
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSR--IPFSERK------------LKFSNRFLPVASPFH- 428
Query: 200 DESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVI 243
S LL + + L + + + + I
Sbjct: 429 ---------------SHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Score = 31.2 bits (70), Expect = 0.41
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 47/176 (26%)
Query: 106 DNVD----EKYEFSRLQQSME-----MVGFTQEKQRRL---FAVLSASGPYTLDNVDEKY 153
+ D + Y FS L + + F EK +R+ ++ + EK
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 154 EFSRLQQSMEMVGF---------TQEKQRRLFAV-LSAVLLLGNVEFVPRKSAY--HHDE 201
F + + F TQ Q L + +A L + +P + + H
Sbjct: 1707 -FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH--- 1762
Query: 202 S-------VTVRNTEVVVL-ISELLRVKKETLLAA--LTAKHARASDETLVINYRL 247
S ++ + V+ I L+ ++ +T + A DE NY +
Sbjct: 1763 SLGEYAALASLAD----VMSIESLVE-----VVFYRGMTMQVAVPRDELGRSNYGM 1809
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.070
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 24/54 (44%)
Query: 110 EKYEFSRLQQSMEMVGFTQEKQRRLFAVLSASGPYTLDNVDEKYEFSRLQQSME 163
EK +LQ S+ +L+A SA P L ++ +ME
Sbjct: 18 EKQALKKLQASL-----------KLYADDSA--P-AL----------AIKATME 47
Score = 31.8 bits (71), Expect = 0.096
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 151 EKYEFSRLQQSMEMVGFTQEKQRRLFAVLSA-VLLL-GNVE 189
EK +LQ S+ +L+A SA L + +E
Sbjct: 18 EKQALKKLQASL-----------KLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 15/43 (34%)
Query: 82 DRHSLHLKKIESY--HYLNRSGPYTLDNVDEKYEFSRLQQSME 122
++ +L KK+++ Y + S P L ++ +ME
Sbjct: 18 EKQAL--KKLQASLKLYADDSAP-AL----------AIKATME 47
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 27.4 bits (61), Expect = 5.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 208 TEVVVLISELLRVKKETLL 226
T V++L E+L L+
Sbjct: 94 TTVIILAGEILAQCAPYLI 112
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 27.1 bits (60), Expect = 6.2
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 87 HLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVL----SASG 142
K ESY L +E++ + + M M+ FT R+F V+ +
Sbjct: 291 KHAKTESYREYLV----YLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDKFAPQK 346
Query: 143 PYTLDNVDEKYEF-------SRLQQSMEMVGFTQEKQR 173
+ +V Y+ R+ + E F EK+
Sbjct: 347 EMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRH 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.364
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,640,963
Number of extensions: 205979
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 30
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)