RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17056
(251 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 133 bits (336), Expect = 3e-36
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 46/229 (20%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ AFGNAKT N+NSSRFGKFI++N+ G + GA ++ YLLEKSR Q + ER +H+F
Sbjct: 152 LEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIF 211
Query: 72 YYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQ 131
YYL+AGAS+Q R+ L L+ +Y +L+
Sbjct: 212 YYLIAGASEQMRNDLLLEGFNNYTFLS--------------------------------- 238
Query: 132 RRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191
+G + + F ++M ++GFT+E+Q + V+S+VL LGN+ F
Sbjct: 239 ---------NGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFK 289
Query: 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 240
+ + ++ + + L+ + ++ + +
Sbjct: 290 K----ERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDV 334
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 132 bits (332), Expect = 9e-36
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ AFGNAKT N+NSSRFGK++++ + G G + YLLEKSR+ + +GER++H+F
Sbjct: 135 LEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIF 194
Query: 72 YYLLAGASDQDR-HSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEK 130
Y +L G S +Y YL +
Sbjct: 195 YQMLKGLSQSKLDELGLTPNAPAYEYLKK------------------------------- 223
Query: 131 QRRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEF 190
SG + + +D+ EF + ++ME +G + Q ++ +L+A+L +GN+ F
Sbjct: 224 ----------SGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITF 273
Query: 191 VPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLP 248
+V V +T+ + + L+ +++L AL + +P
Sbjct: 274 AEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVP 331
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 129 bits (325), Expect = 7e-35
Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 46/238 (19%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ AFGNAKT NNNSSRFGKFI++ + G + GA +Q YLLEKSR+ Q ERNYH+F
Sbjct: 175 LEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIF 234
Query: 72 YYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQ 131
Y LLAGA+ +++ +LHL ES++YLN+
Sbjct: 235 YQLLAGATAEEKKALHLAGPESFNYLNQ-------------------------------- 262
Query: 132 RRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191
SG + V + EF +Q+M++VGF+QE+Q +F +++ +L LGN++F
Sbjct: 263 ---------SGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE 313
Query: 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPE 249
E +++ + S + V L AL A + + + + +
Sbjct: 314 KGA-----GEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEK 366
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 129 bits (324), Expect = 1e-34
Identities = 47/129 (36%), Positives = 76/129 (58%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ + GNAKT N+NSSRFGK+I++ + + + GA ++ YLLEKSR+ Q ERNYH+F
Sbjct: 141 MESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIF 200
Query: 72 YYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQ 131
Y L A A+ + +L L +HY + G +D +D+ E +Q+ ++G + Q
Sbjct: 201 YQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQ 260
Query: 132 RRLFAVLSA 140
+F +L+
Sbjct: 261 MGIFRILAG 269
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 126 bits (317), Expect = 1e-33
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 45/238 (18%)
Query: 12 IHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHVF 71
+ A+GNAKT NNNSSRFGKFI++++ G + GA ++ YLLEKSR+ Q ERNYH+F
Sbjct: 178 LEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIF 237
Query: 72 YYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQ 131
Y + + A + + + +
Sbjct: 238 YQICSNAIPELNDVMLVTPDSGLYSFIN-------------------------------- 265
Query: 132 RRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVEFV 191
G T+DN+D+ EF ++ +++GFT+E+++ +F +++L +G ++F
Sbjct: 266 ---------QGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFK 316
Query: 192 PRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYRLPE 249
R +E T ++ L + LL AL + E + + +
Sbjct: 317 QR----PREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 370
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 120 bits (302), Expect = 1e-31
Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 47/236 (19%)
Query: 11 KIHAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRGERNYHV 70
+ AFGNAKT N+NSSRFGKFI++++ G + A ++ YLLEKSR+ Q ER+YH+
Sbjct: 179 LLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHI 238
Query: 71 FYYLLAGASDQDRHSLHL-KKIESYHYLNRSGPYTLDNVDEKYEFSRLQQSMEMVGFTQE 129
FY +++ + L + YHY++
Sbjct: 239 FYQIMSNKKPELIDMLLITTNPYDYHYVS------------------------------- 267
Query: 130 KQRRLFAVLSASGPYTLDNVDEKYEFSRLQQSMEMVGFTQEKQRRLFAVLSAVLLLGNVE 189
G T+ ++D++ E +++++GF+ +++ ++ + AV+ GN++
Sbjct: 268 -----------EGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLK 316
Query: 190 FVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINY 245
F ++ +E TEV + L+ + LL AL +E +
Sbjct: 317 FKQKQ----REEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVGVGNEAVTKGE 368
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 26.2 bits (56), Expect = 3.2
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 182 VLLLGNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 241
+L+ G FVP + H V + + + ++I + L + D T
Sbjct: 5 ILVTGGNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITD 64
Query: 242 VIN 244
V+
Sbjct: 65 VLF 67
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5
[TaxId: 10726]}
Length = 167
Score = 25.4 bits (55), Expect = 5.2
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 65 ERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRSGPYTLDNVDEKYE 113
+ H++ ++ ++D D +L K+ + + R Y L ++ E +
Sbjct: 120 KLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRRE-YHLRDMYEHHN 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.364
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,643
Number of extensions: 36615
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)