Query psy17057
Match_columns 80
No_of_seqs 103 out of 703
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:46:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 99.9 1.2E-26 2.6E-31 189.9 7.3 74 1-80 188-263 (821)
2 cd01377 MYSc_type_II Myosin mo 99.9 2.5E-26 5.3E-31 185.2 7.4 80 1-80 96-179 (693)
3 cd01380 MYSc_type_V Myosin mot 99.9 5.6E-26 1.2E-30 183.0 7.4 78 1-80 91-170 (691)
4 cd01385 MYSc_type_IX Myosin mo 99.9 7.6E-26 1.6E-30 182.4 7.1 75 1-80 99-175 (692)
5 cd01381 MYSc_type_VII Myosin m 99.9 8E-26 1.7E-30 181.8 6.4 72 1-80 91-164 (671)
6 COG5022 Myosin heavy chain [Cy 99.9 1.2E-25 2.6E-30 190.0 6.7 76 1-80 157-234 (1463)
7 cd01383 MYSc_type_VIII Myosin 99.9 2.5E-25 5.4E-30 179.2 6.6 71 1-80 97-169 (677)
8 cd01379 MYSc_type_III Myosin m 99.9 3.2E-25 6.9E-30 178.0 7.1 73 1-80 91-165 (653)
9 cd01382 MYSc_type_VI Myosin mo 99.9 4.7E-25 1E-29 178.4 7.2 72 1-80 96-169 (717)
10 cd01384 MYSc_type_XI Myosin mo 99.9 4.7E-25 1E-29 177.5 7.1 76 1-80 93-170 (674)
11 cd01386 MYSc_type_XVIII Myosin 99.9 7.6E-25 1.7E-29 178.3 6.9 74 1-80 91-166 (767)
12 cd00124 MYSc Myosin motor doma 99.9 1.1E-24 2.4E-29 174.8 7.1 73 1-80 91-165 (679)
13 cd01378 MYSc_type_I Myosin mot 99.9 1.1E-24 2.4E-29 175.2 6.7 75 1-80 91-167 (674)
14 smart00242 MYSc Myosin. Large 99.9 2.1E-24 4.4E-29 173.5 7.0 75 1-80 97-173 (677)
15 cd01387 MYSc_type_XV Myosin mo 99.9 3.8E-24 8.3E-29 172.2 6.5 72 1-80 92-165 (677)
16 PF00063 Myosin_head: Myosin h 99.9 9.1E-24 2E-28 168.5 5.6 77 1-80 90-168 (689)
17 KOG0163|consensus 99.9 2.5E-23 5.4E-28 170.0 5.4 72 1-80 149-222 (1259)
18 KOG0164|consensus 99.9 3.4E-23 7.4E-28 168.1 5.5 77 1-80 99-177 (1001)
19 KOG0161|consensus 99.8 1.9E-21 4.1E-26 168.6 6.2 79 1-80 173-253 (1930)
20 KOG0162|consensus 99.8 3.1E-21 6.7E-26 157.3 6.0 74 1-79 109-184 (1106)
21 KOG0160|consensus 99.8 2E-20 4.3E-25 153.9 1.6 74 1-80 99-174 (862)
22 KOG4229|consensus 99.6 1.1E-15 2.4E-20 128.2 4.2 73 1-80 153-227 (1062)
23 cd01363 Motor_domain Myosin an 97.1 0.00022 4.7E-09 49.1 1.0 30 46-75 64-94 (186)
24 PF07724 AAA_2: AAA domain (Cd 94.8 0.019 4.2E-07 39.4 2.0 21 1-21 8-28 (171)
25 PF13207 AAA_17: AAA domain; P 94.3 0.027 5.8E-07 35.0 1.6 20 1-20 4-23 (121)
26 COG0444 DppD ABC-type dipeptid 94.0 0.024 5.3E-07 43.2 1.1 21 1-21 36-56 (316)
27 PF12846 AAA_10: AAA-like doma 93.9 0.046 1E-06 38.2 2.4 26 1-26 6-31 (304)
28 cd02025 PanK Pantothenate kina 93.6 0.055 1.2E-06 38.3 2.3 21 1-21 4-24 (220)
29 PF00485 PRK: Phosphoribulokin 93.4 0.046 1E-06 37.4 1.6 22 1-22 4-25 (194)
30 cd01131 PilT Pilus retraction 93.2 0.061 1.3E-06 37.2 1.9 22 1-22 6-27 (198)
31 PRK05480 uridine/cytidine kina 93.1 0.065 1.4E-06 36.8 1.9 20 1-20 11-30 (209)
32 PTZ00301 uridine kinase; Provi 92.9 0.076 1.7E-06 37.7 2.1 20 1-20 8-27 (210)
33 cd02023 UMPK Uridine monophosp 92.7 0.077 1.7E-06 36.1 1.9 20 1-20 4-23 (198)
34 TIGR02322 phosphon_PhnN phosph 92.6 0.077 1.7E-06 35.4 1.7 20 1-20 6-25 (179)
35 PF13238 AAA_18: AAA domain; P 92.5 0.079 1.7E-06 32.6 1.6 20 1-20 3-22 (129)
36 cd02020 CMPK Cytidine monophos 92.4 0.095 2.1E-06 33.2 1.9 20 1-20 4-23 (147)
37 smart00382 AAA ATPases associa 92.3 0.074 1.6E-06 31.8 1.2 23 1-23 7-29 (148)
38 cd01120 RecA-like_NTPases RecA 92.3 0.12 2.6E-06 32.6 2.2 22 1-22 4-25 (165)
39 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.0 0.1 2.2E-06 35.6 1.8 22 1-22 43-64 (205)
40 cd00009 AAA The AAA+ (ATPases 91.8 0.13 2.8E-06 31.2 2.0 21 1-21 24-44 (151)
41 PF00004 AAA: ATPase family as 91.4 0.18 3.8E-06 31.1 2.3 19 2-20 4-22 (132)
42 cd02028 UMPK_like Uridine mono 91.3 0.15 3.2E-06 34.9 2.0 21 1-21 4-24 (179)
43 cd00046 DEXDc DEAD-like helica 91.3 0.17 3.7E-06 30.4 2.0 23 1-23 5-27 (144)
44 PRK00300 gmk guanylate kinase; 91.2 0.12 2.6E-06 35.1 1.4 20 1-20 10-29 (205)
45 TIGR01587 cas3_core CRISPR-ass 91.2 0.37 8E-06 35.4 4.1 21 1-21 4-24 (358)
46 PRK06696 uridine kinase; Valid 91.1 0.16 3.4E-06 35.6 2.0 21 1-21 27-47 (223)
47 PF04851 ResIII: Type III rest 91.1 0.14 3.1E-06 33.1 1.6 21 2-22 31-51 (184)
48 PF04665 Pox_A32: Poxvirus A32 91.0 0.14 3.1E-06 37.5 1.8 22 1-22 18-39 (241)
49 cd02019 NK Nucleoside/nucleoti 91.0 0.19 4E-06 29.3 1.9 20 1-20 4-23 (69)
50 cd01129 PulE-GspE PulE/GspE Th 90.7 0.16 3.4E-06 37.1 1.7 22 1-22 85-106 (264)
51 TIGR02524 dot_icm_DotB Dot/Icm 90.6 0.17 3.7E-06 38.6 2.0 22 1-22 139-160 (358)
52 TIGR00235 udk uridine kinase. 90.4 0.2 4.3E-06 34.6 2.0 21 1-21 11-31 (207)
53 PF00437 T2SE: Type II/IV secr 90.2 0.14 2.9E-06 36.6 1.1 23 1-23 132-154 (270)
54 TIGR02782 TrbB_P P-type conjug 90.1 0.2 4.3E-06 37.3 1.9 21 1-21 137-157 (299)
55 TIGR02173 cyt_kin_arch cytidyl 90.1 0.2 4.4E-06 32.6 1.7 20 1-20 5-24 (171)
56 PRK08233 hypothetical protein; 90.1 0.18 4E-06 33.2 1.5 21 1-21 8-28 (182)
57 COG0572 Udk Uridine kinase [Nu 89.8 0.24 5.1E-06 36.0 2.0 21 1-21 13-33 (218)
58 cd01130 VirB11-like_ATPase Typ 89.7 0.2 4.2E-06 34.2 1.4 20 1-20 30-49 (186)
59 TIGR02525 plasmid_TraJ plasmid 89.7 0.23 5.1E-06 38.3 2.0 22 1-22 154-175 (372)
60 TIGR01420 pilT_fam pilus retra 89.6 0.22 4.9E-06 37.4 1.9 21 1-21 127-147 (343)
61 cd00820 PEPCK_HprK Phosphoenol 89.6 0.19 4E-06 32.7 1.2 17 1-17 20-36 (107)
62 PRK06762 hypothetical protein; 89.4 0.27 5.9E-06 32.3 2.0 20 1-20 7-26 (166)
63 cd01124 KaiC KaiC is a circadi 89.4 0.31 6.7E-06 32.2 2.2 22 1-22 4-25 (187)
64 PF13401 AAA_22: AAA domain; P 89.1 0.24 5.1E-06 30.8 1.4 22 1-22 9-30 (131)
65 PF01935 DUF87: Domain of unkn 89.1 0.37 8E-06 33.4 2.5 20 2-21 29-48 (229)
66 cd01918 HprK_C HprK/P, the bif 89.0 0.25 5.4E-06 33.8 1.6 19 1-19 19-37 (149)
67 cd02024 NRK1 Nicotinamide ribo 89.0 0.27 5.9E-06 34.4 1.8 20 1-20 4-23 (187)
68 COG1123 ATPase components of v 88.9 0.17 3.7E-06 41.1 0.8 23 1-23 40-62 (539)
69 COG2204 AtoC Response regulato 88.9 0.23 4.9E-06 39.7 1.5 61 1-69 169-233 (464)
70 cd00071 GMPK Guanosine monopho 88.8 0.23 5E-06 32.6 1.3 20 1-20 4-23 (137)
71 PRK04182 cytidylate kinase; Pr 88.8 0.28 6.1E-06 32.1 1.7 20 1-20 5-24 (180)
72 PRK00023 cmk cytidylate kinase 88.7 0.32 6.8E-06 34.6 2.0 20 1-20 9-28 (225)
73 PF05729 NACHT: NACHT domain 88.6 0.4 8.6E-06 30.5 2.2 25 1-25 5-29 (166)
74 PRK00131 aroK shikimate kinase 88.5 0.34 7.3E-06 31.5 1.9 20 1-20 9-28 (175)
75 PRK13833 conjugal transfer pro 88.5 0.32 6.9E-06 36.9 2.0 21 1-21 149-169 (323)
76 PRK09270 nucleoside triphospha 88.4 0.34 7.4E-06 34.0 2.0 22 1-22 38-59 (229)
77 PF13671 AAA_33: AAA domain; P 88.1 0.26 5.6E-06 31.2 1.1 20 1-20 4-23 (143)
78 PRK07667 uridine kinase; Provi 88.0 0.39 8.4E-06 33.0 2.0 22 1-22 22-43 (193)
79 PRK13900 type IV secretion sys 88.0 0.29 6.3E-06 37.0 1.5 20 1-20 165-184 (332)
80 PF07728 AAA_5: AAA domain (dy 88.0 0.46 1E-05 30.2 2.3 19 2-20 5-23 (139)
81 PRK13851 type IV secretion sys 87.9 0.24 5.2E-06 37.8 1.0 20 1-20 167-186 (344)
82 PF00910 RNA_helicase: RNA hel 87.7 0.64 1.4E-05 29.0 2.7 24 1-24 3-26 (107)
83 COG4172 ABC-type uncharacteriz 87.6 0.3 6.5E-06 39.4 1.4 21 2-22 42-62 (534)
84 PF01583 APS_kinase: Adenylyls 87.4 0.49 1.1E-05 32.5 2.2 24 1-24 7-30 (156)
85 TIGR01313 therm_gnt_kin carboh 87.3 0.39 8.5E-06 31.5 1.7 20 1-20 3-22 (163)
86 COG4608 AppF ABC-type oligopep 87.2 0.29 6.3E-06 36.6 1.1 18 1-18 44-61 (268)
87 PRK10436 hypothetical protein; 87.2 0.39 8.4E-06 38.1 1.8 22 1-22 223-244 (462)
88 PRK06547 hypothetical protein; 87.2 0.45 9.9E-06 32.6 2.0 20 1-20 20-39 (172)
89 TIGR02538 type_IV_pilB type IV 86.9 0.41 8.8E-06 38.5 1.8 21 1-21 321-341 (564)
90 PF06414 Zeta_toxin: Zeta toxi 86.9 0.37 7.9E-06 33.1 1.4 20 1-20 20-39 (199)
91 TIGR03263 guanyl_kin guanylate 86.9 0.29 6.3E-06 32.4 0.9 20 1-20 6-25 (180)
92 cd02027 APSK Adenosine 5'-phos 86.7 0.51 1.1E-05 31.2 2.0 21 1-21 4-24 (149)
93 PF13191 AAA_16: AAA ATPase do 86.7 0.6 1.3E-05 30.5 2.3 23 1-23 29-51 (185)
94 PRK14737 gmk guanylate kinase; 86.6 0.43 9.3E-06 33.0 1.6 20 1-20 9-28 (186)
95 PF07475 Hpr_kinase_C: HPr Ser 86.2 0.39 8.5E-06 33.8 1.3 18 1-18 23-40 (171)
96 PRK03846 adenylylsulfate kinas 86.2 0.56 1.2E-05 32.1 2.0 22 1-22 29-50 (198)
97 PRK00889 adenylylsulfate kinas 86.1 0.59 1.3E-05 31.1 2.0 21 1-21 9-29 (175)
98 TIGR00455 apsK adenylylsulfate 85.9 0.61 1.3E-05 31.3 2.0 21 1-21 23-43 (184)
99 PRK05541 adenylylsulfate kinas 85.9 0.61 1.3E-05 31.1 2.0 21 1-21 12-32 (176)
100 COG1102 Cmk Cytidylate kinase 85.9 0.61 1.3E-05 33.2 2.1 20 1-20 5-24 (179)
101 TIGR00150 HI0065_YjeE ATPase, 85.9 0.52 1.1E-05 31.6 1.7 21 1-21 27-47 (133)
102 COG2804 PulE Type II secretory 85.8 0.55 1.2E-05 37.9 2.0 24 1-24 263-286 (500)
103 TIGR02533 type_II_gspE general 85.7 0.4 8.7E-06 38.0 1.2 21 1-21 247-267 (486)
104 PRK07261 topology modulation p 85.6 0.58 1.3E-05 31.7 1.8 20 1-20 5-24 (171)
105 TIGR00554 panK_bact pantothena 85.4 0.66 1.4E-05 34.7 2.2 20 1-20 67-86 (290)
106 TIGR02237 recomb_radB DNA repa 85.4 0.7 1.5E-05 31.5 2.1 23 1-23 17-39 (209)
107 cd03115 SRP The signal recogni 85.3 0.7 1.5E-05 30.6 2.1 23 1-23 5-27 (173)
108 cd00464 SK Shikimate kinase (S 85.1 0.68 1.5E-05 29.6 1.9 20 1-20 4-23 (154)
109 cd02034 CooC The accessory pro 85.0 0.78 1.7E-05 29.6 2.1 23 1-23 4-26 (116)
110 TIGR03015 pepcterm_ATPase puta 84.9 0.58 1.3E-05 32.8 1.6 21 1-21 48-68 (269)
111 TIGR00017 cmk cytidylate kinas 84.7 0.68 1.5E-05 32.8 1.9 20 1-20 7-26 (217)
112 COG0542 clpA ATP-binding subun 84.7 0.68 1.5E-05 39.3 2.2 21 2-22 527-547 (786)
113 COG1132 MdlB ABC-type multidru 84.6 0.43 9.4E-06 37.6 0.9 21 1-21 360-380 (567)
114 PRK10751 molybdopterin-guanine 84.5 0.72 1.6E-05 32.1 1.9 22 1-22 11-32 (173)
115 smart00487 DEXDc DEAD-like hel 84.5 0.72 1.6E-05 29.4 1.8 20 1-20 29-49 (201)
116 PF13555 AAA_29: P-loop contai 84.5 0.86 1.9E-05 26.9 2.0 20 1-20 28-47 (62)
117 cd00984 DnaB_C DnaB helicase C 84.3 0.8 1.7E-05 31.7 2.1 23 1-23 18-40 (242)
118 TIGR01360 aden_kin_iso1 adenyl 84.2 0.81 1.8E-05 30.2 2.0 20 1-20 8-27 (188)
119 cd02029 PRK_like Phosphoribulo 84.2 0.75 1.6E-05 34.6 2.0 22 1-22 4-25 (277)
120 TIGR00929 VirB4_CagE type IV s 84.2 0.71 1.5E-05 37.6 2.0 23 1-23 439-461 (785)
121 TIGR03881 KaiC_arch_4 KaiC dom 84.2 0.81 1.8E-05 31.6 2.1 21 1-21 25-45 (229)
122 TIGR02746 TraC-F-type type-IV 83.9 0.77 1.7E-05 37.6 2.1 22 1-22 435-456 (797)
123 PRK11022 dppD dipeptide transp 83.8 0.62 1.4E-05 34.8 1.4 20 1-20 38-57 (326)
124 COG1123 ATPase components of v 83.7 0.74 1.6E-05 37.5 1.9 19 2-20 323-341 (539)
125 TIGR03878 thermo_KaiC_2 KaiC d 83.5 0.86 1.9E-05 32.9 2.0 22 1-22 41-62 (259)
126 PRK09473 oppD oligopeptide tra 83.2 0.67 1.5E-05 34.7 1.4 20 1-20 47-66 (330)
127 cd02026 PRK Phosphoribulokinas 82.9 0.84 1.8E-05 33.5 1.8 20 1-20 4-23 (273)
128 PRK13894 conjugal transfer ATP 82.9 0.86 1.9E-05 34.3 1.9 21 1-21 153-173 (319)
129 PF00270 DEAD: DEAD/DEAH box h 82.8 1.1 2.4E-05 28.7 2.2 21 1-21 19-39 (169)
130 cd03229 ABC_Class3 This class 82.7 0.77 1.7E-05 30.8 1.5 18 1-18 31-48 (178)
131 PRK11308 dppF dipeptide transp 82.7 0.75 1.6E-05 34.4 1.5 20 1-20 46-65 (327)
132 cd01983 Fer4_NifH The Fer4_Nif 82.6 1.2 2.7E-05 25.4 2.2 21 2-22 5-25 (99)
133 PRK15093 antimicrobial peptide 82.5 0.77 1.7E-05 34.2 1.5 20 1-20 38-57 (330)
134 PLN02796 D-glycerate 3-kinase 82.5 0.91 2E-05 35.0 1.9 21 1-21 105-125 (347)
135 cd01394 radB RadB. The archaea 82.4 1.1 2.3E-05 30.8 2.1 22 1-22 24-45 (218)
136 PRK09361 radB DNA repair and r 82.4 1.1 2.4E-05 31.0 2.2 22 1-22 28-49 (225)
137 PF06309 Torsin: Torsin; Inte 82.3 1.7 3.6E-05 29.2 2.9 23 2-24 59-81 (127)
138 cd00227 CPT Chloramphenicol (C 82.1 1.1 2.3E-05 30.1 1.9 20 1-20 7-26 (175)
139 cd02021 GntK Gluconate kinase 81.9 0.91 2E-05 29.2 1.5 19 1-19 4-22 (150)
140 PF06745 KaiC: KaiC; InterPro 81.9 1 2.2E-05 31.1 1.9 20 1-20 24-43 (226)
141 TIGR02788 VirB11 P-type DNA tr 81.9 0.66 1.4E-05 34.3 0.9 20 1-20 149-168 (308)
142 PRK08118 topology modulation p 81.8 1.1 2.3E-05 30.3 1.9 20 1-20 6-25 (167)
143 TIGR01166 cbiO cobalt transpor 81.7 0.89 1.9E-05 30.6 1.5 18 1-18 23-40 (190)
144 TIGR02639 ClpA ATP-dependent C 81.6 1 2.3E-05 37.1 2.1 20 1-20 489-508 (731)
145 cd03293 ABC_NrtD_SsuB_transpor 81.5 0.88 1.9E-05 31.3 1.4 19 1-19 35-53 (220)
146 cd01393 recA_like RecA is a b 81.2 1.2 2.5E-05 30.6 1.9 21 1-21 24-44 (226)
147 TIGR03420 DnaA_homol_Hda DnaA 81.1 1.5 3.3E-05 29.9 2.5 20 2-21 44-63 (226)
148 PRK10865 protein disaggregatio 81.0 1.1 2.4E-05 37.8 2.1 22 1-22 603-624 (857)
149 PRK05439 pantothenate kinase; 80.9 1.3 2.7E-05 33.6 2.2 21 1-21 91-111 (311)
150 cd03259 ABC_Carb_Solutes_like 80.9 0.99 2.1E-05 30.9 1.5 19 1-19 31-49 (213)
151 COG1474 CDC6 Cdc6-related prot 80.8 1.4 2.9E-05 33.9 2.4 25 1-25 47-71 (366)
152 PRK00091 miaA tRNA delta(2)-is 80.8 1 2.2E-05 33.9 1.6 20 1-20 9-28 (307)
153 PRK15453 phosphoribulokinase; 80.6 1.2 2.7E-05 33.6 2.0 21 1-21 10-30 (290)
154 PHA02530 pseT polynucleotide k 80.6 1 2.2E-05 32.3 1.6 20 1-20 7-26 (300)
155 cd03225 ABC_cobalt_CbiO_domain 80.5 1 2.3E-05 30.6 1.5 19 1-19 32-50 (211)
156 TIGR02673 FtsE cell division A 80.5 1 2.2E-05 30.8 1.4 19 1-19 33-51 (214)
157 cd03270 ABC_UvrA_I The excisio 80.5 0.7 1.5E-05 32.5 0.6 13 1-13 26-38 (226)
158 cd03224 ABC_TM1139_LivF_branch 80.5 0.99 2.2E-05 30.9 1.4 18 1-18 31-48 (222)
159 PRK15079 oligopeptide ABC tran 80.5 1 2.2E-05 33.8 1.5 20 1-20 52-71 (331)
160 PLN02348 phosphoribulokinase 80.4 1.2 2.7E-05 34.9 2.0 21 1-21 54-74 (395)
161 COG1124 DppF ABC-type dipeptid 80.4 0.99 2.1E-05 33.6 1.4 20 1-20 38-57 (252)
162 TIGR00176 mobB molybdopterin-g 80.4 1.4 2.9E-05 29.7 2.0 23 1-23 4-26 (155)
163 TIGR02868 CydC thiol reductant 80.3 0.71 1.5E-05 36.0 0.6 20 1-20 366-385 (529)
164 PRK13891 conjugal transfer pro 80.2 1.2 2.7E-05 37.5 2.1 22 1-22 493-514 (852)
165 cd01123 Rad51_DMC1_radA Rad51_ 80.2 1.1 2.4E-05 30.9 1.6 19 1-19 24-42 (235)
166 PF00625 Guanylate_kin: Guanyl 80.0 1.2 2.6E-05 30.0 1.6 20 1-20 7-26 (183)
167 PF13245 AAA_19: Part of AAA d 80.0 1.7 3.7E-05 26.0 2.2 21 2-22 16-36 (76)
168 PRK05428 HPr kinase/phosphoryl 79.9 1.1 2.4E-05 34.0 1.6 19 1-19 151-169 (308)
169 PF00005 ABC_tran: ABC transpo 79.9 0.88 1.9E-05 28.6 0.9 19 1-19 16-34 (137)
170 PRK10078 ribose 1,5-bisphospho 79.9 0.9 1.9E-05 30.8 1.0 20 1-20 7-26 (186)
171 TIGR00595 priA primosomal prot 79.8 1.7 3.6E-05 34.6 2.6 21 2-22 3-23 (505)
172 cd03297 ABC_ModC_molybdenum_tr 79.8 1.1 2.4E-05 30.7 1.4 19 1-19 28-46 (214)
173 PF13481 AAA_25: AAA domain; P 79.6 1.3 2.7E-05 29.5 1.6 22 1-22 37-58 (193)
174 TIGR00960 3a0501s02 Type II (G 79.6 1.1 2.4E-05 30.7 1.4 19 1-19 34-52 (216)
175 PLN02318 phosphoribulokinase/u 79.6 1 2.2E-05 37.5 1.4 20 1-20 70-89 (656)
176 PRK13721 conjugal transfer ATP 79.6 1.2 2.7E-05 37.3 1.9 22 1-22 454-475 (844)
177 PF13476 AAA_23: AAA domain; P 79.5 1.2 2.7E-05 29.1 1.6 20 1-20 24-43 (202)
178 TIGR02881 spore_V_K stage V sp 79.5 1.7 3.7E-05 31.0 2.4 21 2-22 48-68 (261)
179 cd03269 ABC_putative_ATPase Th 79.4 1.2 2.6E-05 30.4 1.5 18 1-18 31-48 (210)
180 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.4 1.2 2.5E-05 30.5 1.5 19 1-19 35-53 (218)
181 cd03219 ABC_Mj1267_LivG_branch 79.4 1.1 2.3E-05 31.1 1.3 18 1-18 31-48 (236)
182 PRK05973 replicative DNA helic 79.4 1.5 3.2E-05 32.0 2.0 22 1-22 69-90 (237)
183 TIGR03880 KaiC_arch_3 KaiC dom 79.3 1.6 3.5E-05 30.2 2.1 21 1-21 21-41 (224)
184 TIGR00101 ureG urease accessor 79.2 1.4 3.1E-05 30.7 1.9 21 1-21 6-26 (199)
185 PRK07429 phosphoribulokinase; 79.1 1.3 2.9E-05 33.4 1.8 20 1-20 13-32 (327)
186 cd03265 ABC_DrrA DrrA is the A 79.1 1.2 2.6E-05 30.6 1.5 18 1-18 31-48 (220)
187 PRK11545 gntK gluconate kinase 79.0 1.9 4.1E-05 28.9 2.4 19 2-20 1-19 (163)
188 cd03235 ABC_Metallic_Cations A 79.0 1.1 2.4E-05 30.6 1.2 19 1-19 30-48 (213)
189 TIGR00972 3a0107s01c2 phosphat 79.0 1.2 2.6E-05 31.3 1.4 19 1-19 32-50 (247)
190 TIGR03744 traC_PFL_4706 conjug 78.9 1.5 3.3E-05 37.1 2.2 22 1-22 480-501 (893)
191 cd03256 ABC_PhnC_transporter A 78.9 1.2 2.6E-05 30.9 1.4 19 1-19 32-50 (241)
192 TIGR01359 UMP_CMP_kin_fam UMP- 78.7 1.5 3.3E-05 29.0 1.8 20 1-20 4-23 (183)
193 TIGR03499 FlhF flagellar biosy 78.7 1.6 3.5E-05 32.0 2.1 23 1-23 199-221 (282)
194 COG1493 HprK Serine kinase of 78.7 1.3 2.8E-05 33.9 1.6 19 1-19 150-168 (308)
195 PRK15177 Vi polysaccharide exp 78.7 1.3 2.7E-05 30.8 1.5 19 1-19 18-36 (213)
196 COG2884 FtsE Predicted ATPase 78.6 1.4 3E-05 32.3 1.7 19 1-19 33-51 (223)
197 cd03258 ABC_MetN_methionine_tr 78.6 1.3 2.7E-05 30.8 1.4 19 1-19 36-54 (233)
198 cd03292 ABC_FtsE_transporter F 78.6 1.3 2.8E-05 30.2 1.4 19 1-19 32-50 (214)
199 cd03264 ABC_drug_resistance_li 78.5 1.3 2.8E-05 30.3 1.4 18 1-18 30-47 (211)
200 cd03301 ABC_MalK_N The N-termi 78.5 1.3 2.8E-05 30.2 1.5 19 1-19 31-49 (213)
201 PRK13477 bifunctional pantoate 78.5 1.3 2.9E-05 35.7 1.7 20 1-20 289-308 (512)
202 PRK13538 cytochrome c biogenes 78.4 1.3 2.8E-05 30.2 1.5 19 1-19 32-50 (204)
203 PLN02840 tRNA dimethylallyltra 78.3 1.3 2.9E-05 34.9 1.6 20 1-20 26-45 (421)
204 COG0497 RecN ATPase involved i 78.3 0.94 2E-05 37.1 0.8 16 1-16 27-42 (557)
205 cd03245 ABCC_bacteriocin_expor 78.2 1.3 2.9E-05 30.3 1.5 18 1-18 35-52 (220)
206 PRK03839 putative kinase; Prov 78.2 1.7 3.7E-05 29.0 2.0 20 1-20 5-24 (180)
207 PRK02496 adk adenylate kinase; 78.2 1.7 3.8E-05 29.0 2.0 20 1-20 6-25 (184)
208 TIGR02880 cbbX_cfxQ probable R 78.1 1.7 3.8E-05 31.8 2.1 22 2-23 64-85 (284)
209 TIGR01277 thiQ thiamine ABC tr 78.1 1.4 3E-05 30.3 1.5 19 1-19 29-47 (213)
210 cd03298 ABC_ThiQ_thiamine_tran 78.0 1.4 3E-05 30.1 1.5 19 1-19 29-47 (211)
211 TIGR03864 PQQ_ABC_ATP ABC tran 77.9 1.4 2.9E-05 30.8 1.5 18 1-18 32-49 (236)
212 PRK11174 cysteine/glutathione 77.9 0.91 2E-05 35.8 0.6 20 1-20 381-400 (588)
213 cd03260 ABC_PstB_phosphate_tra 77.9 1.4 3E-05 30.4 1.5 20 1-20 31-50 (227)
214 TIGR03877 thermo_KaiC_1 KaiC d 77.7 1.8 3.9E-05 30.5 2.1 20 1-20 26-45 (237)
215 PRK13873 conjugal transfer ATP 77.7 1.7 3.6E-05 36.3 2.1 22 1-22 446-467 (811)
216 cd03234 ABCG_White The White s 77.7 1.4 3E-05 30.5 1.5 20 1-20 38-57 (226)
217 PRK14244 phosphate ABC transpo 77.7 1.4 3E-05 31.0 1.5 19 1-19 36-54 (251)
218 PLN02165 adenylate isopentenyl 77.6 1.5 3.2E-05 33.7 1.7 20 1-20 48-67 (334)
219 PF00158 Sigma54_activat: Sigm 77.6 1.8 3.8E-05 29.6 1.9 18 1-18 27-44 (168)
220 PRK08356 hypothetical protein; 77.5 1.4 3E-05 30.1 1.4 18 1-18 10-27 (195)
221 TIGR01189 ccmA heme ABC export 77.5 1.5 3.1E-05 29.8 1.5 19 1-19 31-49 (198)
222 PRK14247 phosphate ABC transpo 77.4 1.4 3.1E-05 30.9 1.4 19 1-19 34-52 (250)
223 PRK08903 DnaA regulatory inact 77.3 2.3 5E-05 29.4 2.5 19 2-20 48-66 (227)
224 CHL00095 clpC Clp protease ATP 77.3 1.7 3.6E-05 36.5 2.0 22 1-22 544-565 (821)
225 PRK06761 hypothetical protein; 77.2 1.6 3.4E-05 32.7 1.7 22 1-22 8-29 (282)
226 TIGR01978 sufC FeS assembly AT 77.2 1.4 3.1E-05 30.6 1.4 19 1-19 31-49 (243)
227 PRK06217 hypothetical protein; 77.2 1.7 3.7E-05 29.3 1.7 20 1-20 6-25 (183)
228 PRK13540 cytochrome c biogenes 77.2 1.5 3.3E-05 29.8 1.5 18 1-18 32-49 (200)
229 cd03262 ABC_HisP_GlnQ_permease 77.2 1.5 3.3E-05 29.8 1.5 19 1-19 31-49 (213)
230 TIGR02324 CP_lyasePhnL phospho 77.1 1.5 3.2E-05 30.2 1.4 19 1-19 39-57 (224)
231 TIGR01184 ntrCD nitrate transp 77.1 1.5 3.3E-05 30.6 1.5 19 1-19 16-34 (230)
232 TIGR02928 orc1/cdc6 family rep 77.0 1.9 4E-05 31.7 2.0 22 1-22 45-66 (365)
233 cd03257 ABC_NikE_OppD_transpor 77.0 1.5 3.2E-05 30.1 1.4 19 1-19 36-54 (228)
234 PRK11034 clpA ATP-dependent Cl 76.9 1.7 3.7E-05 36.5 2.0 19 2-20 494-512 (758)
235 TIGR02770 nickel_nikD nickel i 76.9 1.5 3.2E-05 30.5 1.4 19 1-19 17-35 (230)
236 TIGR02640 gas_vesic_GvpN gas v 76.7 2.2 4.8E-05 30.7 2.3 18 2-19 27-44 (262)
237 PRK11131 ATP-dependent RNA hel 76.7 3.4 7.4E-05 36.9 3.8 20 1-23 94-113 (1294)
238 PF03205 MobB: Molybdopterin g 76.7 1.9 4.1E-05 28.6 1.8 24 1-24 5-28 (140)
239 PRK09493 glnQ glutamine ABC tr 76.7 1.5 3.3E-05 30.5 1.4 19 1-19 32-50 (240)
240 TIGR03005 ectoine_ehuA ectoine 76.6 1.5 3.3E-05 30.8 1.4 18 1-18 31-48 (252)
241 cd03268 ABC_BcrA_bacitracin_re 76.6 1.6 3.5E-05 29.7 1.5 18 1-18 31-48 (208)
242 PRK11629 lolD lipoprotein tran 76.6 1.6 3.5E-05 30.4 1.5 19 1-19 40-58 (233)
243 TIGR03608 L_ocin_972_ABC putat 76.5 1.6 3.5E-05 29.5 1.5 18 1-18 29-46 (206)
244 PRK13541 cytochrome c biogenes 76.5 1.6 3.5E-05 29.6 1.5 18 1-18 31-48 (195)
245 PRK11176 lipid transporter ATP 76.5 1.4 3E-05 34.7 1.3 20 1-20 374-393 (582)
246 PRK11264 putative amino-acid A 76.5 1.6 3.4E-05 30.6 1.5 19 1-19 34-52 (250)
247 PF12774 AAA_6: Hydrolytic ATP 76.4 1.6 3.5E-05 31.5 1.5 19 2-20 38-56 (231)
248 TIGR02315 ABC_phnC phosphonate 76.4 1.6 3.5E-05 30.3 1.5 18 1-18 33-50 (243)
249 cd03226 ABC_cobalt_CbiO_domain 76.4 1.6 3.4E-05 29.8 1.4 18 1-18 31-48 (205)
250 PRK04040 adenylate kinase; Pro 76.4 1.8 4E-05 29.9 1.7 20 1-20 7-26 (188)
251 PRK09825 idnK D-gluconate kina 76.3 1.9 4.1E-05 29.4 1.8 20 1-20 8-27 (176)
252 PRK11701 phnK phosphonate C-P 76.3 1.6 3.5E-05 30.9 1.5 19 1-19 37-55 (258)
253 TIGR00679 hpr-ser Hpr(Ser) kin 76.3 1.6 3.4E-05 33.2 1.5 19 1-19 151-169 (304)
254 COG4170 SapD ABC-type antimicr 76.3 1.7 3.6E-05 32.9 1.6 17 2-18 39-55 (330)
255 cd03296 ABC_CysA_sulfate_impor 76.2 1.6 3.5E-05 30.4 1.5 19 1-19 33-51 (239)
256 PRK10575 iron-hydroxamate tran 76.2 1.4 3.1E-05 31.4 1.2 18 1-18 42-59 (265)
257 cd03214 ABC_Iron-Siderophores_ 76.2 1.6 3.6E-05 29.2 1.4 18 1-18 30-47 (180)
258 PRK11124 artP arginine transpo 76.2 1.7 3.6E-05 30.4 1.5 18 1-18 33-50 (242)
259 TIGR03410 urea_trans_UrtE urea 76.2 1.6 3.4E-05 30.2 1.4 19 1-19 31-49 (230)
260 COG4619 ABC-type uncharacteriz 76.1 1.7 3.6E-05 31.7 1.5 17 1-17 34-50 (223)
261 PRK06067 flagellar accessory p 76.0 2.2 4.8E-05 29.7 2.1 22 1-22 30-51 (234)
262 PRK13539 cytochrome c biogenes 75.9 1.7 3.7E-05 29.8 1.5 18 1-18 33-50 (207)
263 PRK10908 cell division protein 75.8 1.7 3.6E-05 30.0 1.4 18 1-18 33-50 (222)
264 cd03231 ABC_CcmA_heme_exporter 75.8 1.7 3.7E-05 29.7 1.4 19 1-19 31-49 (201)
265 PRK12402 replication factor C 75.8 2.1 4.6E-05 30.8 2.0 23 1-23 41-63 (337)
266 cd03261 ABC_Org_Solvent_Resist 75.8 1.7 3.7E-05 30.2 1.5 19 1-19 31-49 (235)
267 PRK14269 phosphate ABC transpo 75.7 1.7 3.7E-05 30.5 1.5 18 1-18 33-50 (246)
268 PRK10584 putative ABC transpor 75.7 1.8 3.8E-05 29.9 1.5 19 1-19 41-59 (228)
269 PRK10744 pstB phosphate transp 75.6 1.7 3.7E-05 30.9 1.4 19 1-19 44-62 (260)
270 PLN02200 adenylate kinase fami 75.6 2.1 4.5E-05 30.6 1.9 20 1-20 48-67 (234)
271 cd03247 ABCC_cytochrome_bd The 75.5 1.8 3.8E-05 29.0 1.4 18 1-18 33-50 (178)
272 PRK08533 flagellar accessory p 75.4 2.3 5E-05 30.2 2.1 21 1-21 29-49 (230)
273 TIGR03771 anch_rpt_ABC anchore 75.4 1.8 3.8E-05 30.1 1.5 19 1-19 11-29 (223)
274 TIGR02323 CP_lyasePhnK phospho 75.3 1.8 3.8E-05 30.4 1.5 19 1-19 34-52 (253)
275 smart00763 AAA_PrkA PrkA AAA d 75.3 2.1 4.6E-05 33.2 2.0 22 1-22 83-104 (361)
276 PRK14242 phosphate transporter 75.3 1.8 3.9E-05 30.4 1.5 18 1-18 37-54 (253)
277 PF12775 AAA_7: P-loop contain 75.2 1.9 4.1E-05 31.6 1.6 18 1-18 38-55 (272)
278 TIGR03346 chaperone_ClpB ATP-d 75.1 2 4.4E-05 36.1 2.0 22 1-22 600-621 (852)
279 cd03252 ABCC_Hemolysin The ABC 75.1 1.8 3.8E-05 30.1 1.4 19 1-19 33-51 (237)
280 TIGR03345 VI_ClpV1 type VI sec 75.1 2.1 4.6E-05 36.3 2.1 21 1-21 601-621 (852)
281 PRK14239 phosphate transporter 75.1 1.8 3.9E-05 30.3 1.5 18 1-18 36-53 (252)
282 TIGR00968 3a0106s01 sulfate AB 75.1 1.9 4E-05 30.2 1.5 19 1-19 31-49 (237)
283 cd03230 ABC_DR_subfamily_A Thi 75.1 1.8 4E-05 28.8 1.4 18 1-18 31-48 (173)
284 PF02367 UPF0079: Uncharacteri 75.1 2.3 5E-05 28.1 1.9 18 3-20 22-39 (123)
285 cd01876 YihA_EngB The YihA (En 75.0 1.9 4.1E-05 26.9 1.4 17 1-17 4-20 (170)
286 TIGR00174 miaA tRNA isopenteny 75.0 1.8 3.9E-05 32.4 1.5 20 1-20 4-23 (287)
287 PRK14530 adenylate kinase; Pro 75.0 2.3 5E-05 29.4 2.0 20 1-20 8-27 (215)
288 TIGR03574 selen_PSTK L-seryl-t 74.9 2.3 5.1E-05 30.0 2.0 21 1-21 4-24 (249)
289 TIGR02204 MsbA_rel ABC transpo 74.8 1.7 3.6E-05 34.1 1.3 20 1-20 371-390 (576)
290 cd03218 ABC_YhbG The ABC trans 74.8 1.9 4.1E-05 29.8 1.5 18 1-18 31-48 (232)
291 PRK14268 phosphate ABC transpo 74.8 1.8 4E-05 30.7 1.4 19 1-19 43-61 (258)
292 PRK14267 phosphate ABC transpo 74.7 1.9 4.1E-05 30.3 1.5 19 1-19 35-53 (253)
293 PRK10247 putative ABC transpor 74.7 1.9 4.1E-05 30.0 1.5 18 1-18 38-55 (225)
294 cd03263 ABC_subfamily_A The AB 74.7 1.9 4.2E-05 29.5 1.5 18 1-18 33-50 (220)
295 PRK11300 livG leucine/isoleuci 74.6 1.8 4E-05 30.3 1.4 19 1-19 36-54 (255)
296 PRK14271 phosphate ABC transpo 74.6 1.9 4.1E-05 31.2 1.5 18 1-18 52-69 (276)
297 PRK14241 phosphate transporter 74.5 1.9 4.1E-05 30.5 1.5 20 1-20 35-54 (258)
298 PRK14240 phosphate transporter 74.5 1.9 4.1E-05 30.3 1.4 18 1-18 34-51 (250)
299 cd03246 ABCC_Protease_Secretio 74.5 2 4.3E-05 28.7 1.5 19 1-19 33-51 (173)
300 PRK10646 ADP-binding protein; 74.4 2.7 6E-05 28.8 2.2 20 2-21 34-53 (153)
301 PRK13764 ATPase; Provisional 74.4 2.2 4.7E-05 35.2 1.9 22 1-22 262-283 (602)
302 cd03216 ABC_Carb_Monos_I This 74.3 2 4.3E-05 28.6 1.4 18 1-18 31-48 (163)
303 cd03249 ABC_MTABC3_MDL1_MDL2 M 74.2 1.9 4E-05 30.0 1.3 19 1-19 34-52 (238)
304 PRK14261 phosphate ABC transpo 74.1 2 4.3E-05 30.3 1.5 18 1-18 37-54 (253)
305 PHA02544 44 clamp loader, smal 74.0 2.8 6.1E-05 30.2 2.3 20 1-20 48-67 (316)
306 PRK05416 glmZ(sRNA)-inactivati 74.0 1.9 4.1E-05 32.2 1.4 16 1-16 11-26 (288)
307 PRK04328 hypothetical protein; 74.0 2.7 5.8E-05 30.1 2.1 20 1-20 28-47 (249)
308 PRK13768 GTPase; Provisional 74.0 2.6 5.7E-05 30.3 2.1 23 1-23 7-29 (253)
309 PRK13645 cbiO cobalt transport 74.0 1.9 4.2E-05 31.2 1.4 19 1-19 42-60 (289)
310 PF08423 Rad51: Rad51; InterP 74.0 1.8 3.9E-05 31.4 1.3 17 1-17 43-59 (256)
311 PRK13947 shikimate kinase; Pro 74.0 2.6 5.7E-05 27.6 1.9 20 1-20 6-25 (171)
312 PRK13946 shikimate kinase; Pro 73.9 2.4 5.2E-05 28.7 1.8 20 1-20 15-34 (184)
313 TIGR02211 LolD_lipo_ex lipopro 73.8 2.1 4.5E-05 29.3 1.5 18 1-18 36-53 (221)
314 PRK14270 phosphate ABC transpo 73.8 2.1 4.4E-05 30.1 1.5 19 1-19 35-53 (251)
315 cd03223 ABCD_peroxisomal_ALDP 73.6 2.1 4.7E-05 28.5 1.5 19 1-19 32-50 (166)
316 cd03267 ABC_NatA_like Similar 73.6 2 4.4E-05 30.1 1.4 18 1-18 52-69 (236)
317 PRK05057 aroK shikimate kinase 73.6 3 6.4E-05 28.2 2.2 19 2-20 10-28 (172)
318 PRK14238 phosphate transporter 73.5 2.1 4.5E-05 30.8 1.5 20 1-20 55-74 (271)
319 TIGR00382 clpX endopeptidase C 73.5 2.2 4.8E-05 33.5 1.7 19 2-20 122-140 (413)
320 PRK00411 cdc6 cell division co 73.4 2.6 5.6E-05 31.3 2.0 22 1-22 60-81 (394)
321 PRK07952 DNA replication prote 73.4 2.9 6.2E-05 30.4 2.2 23 1-23 104-126 (244)
322 PRK14245 phosphate ABC transpo 73.4 2.1 4.5E-05 30.1 1.4 18 1-18 34-51 (250)
323 TIGR02982 heterocyst_DevA ABC 73.4 2.1 4.6E-05 29.5 1.5 19 1-19 36-54 (220)
324 PRK10419 nikE nickel transport 73.4 2.1 4.5E-05 30.7 1.4 18 1-18 43-60 (268)
325 cd04163 Era Era subfamily. Er 73.2 2.3 5E-05 26.3 1.5 18 1-18 8-25 (168)
326 PRK08727 hypothetical protein; 73.2 3 6.5E-05 29.5 2.2 22 1-22 46-67 (233)
327 cd03233 ABC_PDR_domain1 The pl 73.2 2 4.4E-05 29.4 1.3 19 1-19 38-56 (202)
328 PRK13648 cbiO cobalt transport 73.1 2.2 4.7E-05 30.5 1.5 18 1-18 40-57 (269)
329 PRK14250 phosphate ABC transpo 73.1 2.1 4.6E-05 30.0 1.4 18 1-18 34-51 (241)
330 KOG0057|consensus 73.1 2.5 5.4E-05 34.9 1.9 21 1-21 383-403 (591)
331 TIGR02769 nickel_nikE nickel i 73.0 2.2 4.7E-05 30.5 1.4 19 1-19 42-60 (265)
332 PRK14738 gmk guanylate kinase; 73.0 2.1 4.5E-05 29.7 1.3 18 1-18 18-35 (206)
333 PRK14273 phosphate ABC transpo 73.0 2.2 4.7E-05 30.1 1.5 19 1-19 38-56 (254)
334 PRK14253 phosphate ABC transpo 72.9 2.2 4.8E-05 29.9 1.5 19 1-19 34-52 (249)
335 cd03273 ABC_SMC2_euk Eukaryoti 72.9 3.4 7.3E-05 29.2 2.4 20 1-20 30-49 (251)
336 cd03266 ABC_NatA_sodium_export 72.8 2.3 4.9E-05 29.1 1.5 18 1-18 36-53 (218)
337 cd00267 ABC_ATPase ABC (ATP-bi 72.7 2.2 4.8E-05 27.8 1.3 18 1-18 30-47 (157)
338 PRK14251 phosphate ABC transpo 72.7 2.2 4.9E-05 29.9 1.5 20 1-20 35-54 (251)
339 PRK11247 ssuB aliphatic sulfon 72.7 2.2 4.8E-05 30.7 1.4 19 1-19 43-61 (257)
340 COG1125 OpuBA ABC-type proline 72.6 2.5 5.4E-05 32.3 1.7 24 2-26 33-56 (309)
341 COG0529 CysC Adenylylsulfate k 72.6 3.5 7.5E-05 29.8 2.4 24 1-24 28-51 (197)
342 PRK14258 phosphate ABC transpo 72.5 2.3 5E-05 30.2 1.5 20 1-20 38-57 (261)
343 PRK11614 livF leucine/isoleuci 72.5 2.2 4.8E-05 29.7 1.4 18 1-18 36-53 (237)
344 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 72.4 2.2 4.9E-05 29.7 1.4 18 1-18 53-70 (224)
345 PRK14528 adenylate kinase; Pro 72.4 2.9 6.4E-05 28.5 2.0 20 1-20 6-25 (186)
346 PRK14260 phosphate ABC transpo 72.4 2.4 5.1E-05 30.1 1.5 20 1-20 38-57 (259)
347 cd03244 ABCC_MRP_domain2 Domai 72.4 2.4 5.2E-05 29.1 1.5 19 1-19 35-53 (221)
348 PRK03731 aroL shikimate kinase 72.3 3.1 6.6E-05 27.4 2.0 20 1-20 7-26 (171)
349 PRK05342 clpX ATP-dependent pr 72.3 2.7 5.9E-05 32.8 1.9 20 1-20 113-132 (412)
350 cd03294 ABC_Pro_Gly_Bertaine T 72.2 2.3 5.1E-05 30.5 1.5 19 1-19 55-73 (269)
351 PRK14527 adenylate kinase; Pro 72.2 2.9 6.3E-05 28.3 1.9 20 1-20 11-30 (191)
352 TIGR03740 galliderm_ABC gallid 72.2 2.4 5.2E-05 29.2 1.5 18 1-18 31-48 (223)
353 cd03213 ABCG_EPDR ABCG transpo 72.1 2.3 5E-05 29.0 1.4 18 1-18 40-57 (194)
354 PRK11248 tauB taurine transpor 72.1 2.3 5E-05 30.3 1.4 19 1-19 32-50 (255)
355 TIGR01193 bacteriocin_ABC ABC- 72.0 1.8 3.9E-05 35.1 0.9 20 1-20 505-524 (708)
356 PRK04220 2-phosphoglycerate ki 72.0 2.8 6.2E-05 31.7 2.0 20 1-20 97-116 (301)
357 cd03238 ABC_UvrA The excision 72.0 2.4 5.2E-05 29.2 1.4 17 1-17 26-42 (176)
358 cd03232 ABC_PDR_domain2 The pl 71.9 2.4 5.2E-05 28.8 1.4 17 1-17 38-54 (192)
359 PRK10418 nikD nickel transport 71.7 2.4 5.3E-05 30.0 1.5 19 1-19 34-52 (254)
360 cd03369 ABCC_NFT1 Domain 2 of 71.6 2.5 5.5E-05 28.7 1.5 19 1-19 39-57 (207)
361 PRK14256 phosphate ABC transpo 71.6 2.5 5.5E-05 29.7 1.5 18 1-18 35-52 (252)
362 PRK14237 phosphate transporter 71.5 2.5 5.4E-05 30.2 1.5 19 1-19 51-69 (267)
363 PRK10869 recombination and rep 71.5 1.7 3.7E-05 35.0 0.7 16 1-16 27-42 (553)
364 PRK10895 lipopolysaccharide AB 71.4 2.5 5.5E-05 29.4 1.5 18 1-18 34-51 (241)
365 PRK14265 phosphate ABC transpo 71.4 2.4 5.3E-05 30.5 1.4 18 1-18 51-68 (274)
366 TIGR03783 Bac_Flav_CT_G Bacter 71.3 3.2 6.9E-05 35.2 2.2 22 1-22 443-464 (829)
367 PRK11831 putative ABC transpor 71.2 2.5 5.4E-05 30.3 1.4 18 1-18 38-55 (269)
368 PF04548 AIG1: AIG1 family; I 71.2 3.4 7.3E-05 28.7 2.1 17 2-18 6-22 (212)
369 PRK09984 phosphonate/organopho 71.2 2.5 5.5E-05 29.9 1.5 19 1-19 35-53 (262)
370 cd03114 ArgK-like The function 71.2 3.6 7.7E-05 27.3 2.1 22 2-23 5-26 (148)
371 PRK15056 manganese/iron transp 71.2 2.4 5.3E-05 30.4 1.4 18 1-18 38-55 (272)
372 PRK14252 phosphate ABC transpo 71.1 2.5 5.5E-05 30.0 1.5 18 1-18 47-64 (265)
373 PRK13657 cyclic beta-1,2-gluca 71.1 2.4 5.1E-05 33.6 1.4 20 1-20 366-385 (588)
374 PRK09580 sufC cysteine desulfu 71.1 2.3 5E-05 29.7 1.2 18 1-18 32-49 (248)
375 PRK14255 phosphate ABC transpo 71.0 2.5 5.5E-05 29.6 1.4 18 1-18 36-53 (252)
376 PRK00440 rfc replication facto 71.0 3.4 7.3E-05 29.5 2.1 22 1-22 43-64 (319)
377 PRK14274 phosphate ABC transpo 71.0 2.7 5.8E-05 29.8 1.5 20 1-20 43-62 (259)
378 PRK14248 phosphate ABC transpo 70.9 2.6 5.6E-05 30.0 1.5 18 1-18 52-69 (268)
379 PRK14263 phosphate ABC transpo 70.9 2.6 5.6E-05 30.2 1.5 19 1-19 39-57 (261)
380 PRK13543 cytochrome c biogenes 70.8 2.6 5.7E-05 29.0 1.4 18 1-18 42-59 (214)
381 TIGR00678 holB DNA polymerase 70.8 3.4 7.3E-05 27.8 1.9 23 1-23 19-41 (188)
382 PRK14235 phosphate transporter 70.7 2.7 5.8E-05 30.1 1.5 20 1-20 50-69 (267)
383 PRK13638 cbiO cobalt transport 70.7 2.5 5.3E-05 30.3 1.3 18 1-18 32-49 (271)
384 cd03116 MobB Molybdenum is an 70.7 3.6 7.7E-05 27.9 2.0 23 1-23 6-28 (159)
385 COG3267 ExeA Type II secretory 70.7 3.9 8.4E-05 30.8 2.4 16 1-16 56-71 (269)
386 PRK14262 phosphate ABC transpo 70.6 2.6 5.7E-05 29.5 1.4 19 1-19 34-52 (250)
387 cd03250 ABCC_MRP_domain1 Domai 70.6 2.7 5.8E-05 28.6 1.4 19 1-19 36-54 (204)
388 TIGR01187 potA spermidine/putr 70.6 3.5 7.7E-05 30.6 2.2 19 1-19 1-19 (325)
389 PRK14731 coaE dephospho-CoA ki 70.6 2.7 5.8E-05 29.2 1.5 18 1-18 10-27 (208)
390 PLN03046 D-glycerate 3-kinase; 70.6 3.3 7.1E-05 33.3 2.1 20 1-20 217-236 (460)
391 PRK13631 cbiO cobalt transport 70.6 2.6 5.6E-05 31.4 1.5 19 1-19 57-75 (320)
392 TIGR03754 conj_TOL_TraD conjug 70.5 5.4 0.00012 33.2 3.4 26 1-26 185-210 (643)
393 PRK13695 putative NTPase; Prov 70.4 3.6 7.8E-05 27.4 2.0 21 1-21 5-25 (174)
394 cd03254 ABCC_Glucan_exporter_l 70.3 2.8 6E-05 28.9 1.5 19 1-19 34-52 (229)
395 cd03237 ABC_RNaseL_inhibitor_d 70.2 2.8 6E-05 30.0 1.5 19 1-19 30-48 (246)
396 PRK14734 coaE dephospho-CoA ki 70.2 4.6 9.9E-05 28.1 2.5 18 1-18 6-23 (200)
397 PRK06526 transposase; Provisio 70.1 3.4 7.5E-05 30.0 2.0 22 1-22 103-124 (254)
398 PRK13632 cbiO cobalt transport 70.1 2.8 6E-05 30.1 1.5 19 1-19 40-58 (271)
399 PF14532 Sigma54_activ_2: Sigm 70.1 1.3 2.7E-05 28.6 -0.3 18 1-18 26-43 (138)
400 cd03248 ABCC_TAP TAP, the Tran 70.0 2.9 6.2E-05 28.8 1.5 19 1-19 45-63 (226)
401 CHL00131 ycf16 sulfate ABC tra 70.0 2.4 5.3E-05 29.6 1.2 18 1-18 38-55 (252)
402 COG4240 Predicted kinase [Gene 70.0 4.1 8.9E-05 30.9 2.4 24 1-24 55-78 (300)
403 cd03222 ABC_RNaseL_inhibitor T 69.9 2.8 6E-05 28.9 1.4 19 1-19 30-48 (177)
404 PRK09544 znuC high-affinity zi 69.9 2.8 6E-05 29.9 1.4 18 1-18 35-52 (251)
405 PRK12339 2-phosphoglycerate ki 69.9 3.2 6.8E-05 29.1 1.7 20 1-20 8-27 (197)
406 PF13086 AAA_11: AAA domain; P 69.8 3.5 7.6E-05 27.4 1.8 20 1-20 22-41 (236)
407 TIGR02236 recomb_radA DNA repa 69.7 3.4 7.4E-05 30.2 1.9 19 1-19 100-118 (310)
408 PRK10619 histidine/lysine/argi 69.7 2.8 6.2E-05 29.6 1.4 20 1-20 36-55 (257)
409 cd03215 ABC_Carb_Monos_II This 69.6 2.9 6.2E-05 28.1 1.4 18 1-18 31-48 (182)
410 PLN02748 tRNA dimethylallyltra 69.6 2.9 6.3E-05 33.4 1.6 20 1-20 27-46 (468)
411 PRK04296 thymidine kinase; Pro 69.6 3.7 8.1E-05 28.1 2.0 19 1-19 7-26 (190)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 69.6 2.8 6.1E-05 27.4 1.3 18 1-18 31-48 (144)
413 PRK14249 phosphate ABC transpo 69.4 2.9 6.3E-05 29.4 1.5 19 1-19 35-53 (251)
414 PRK00080 ruvB Holliday junctio 69.4 3.7 8.1E-05 30.3 2.1 20 1-20 56-75 (328)
415 PRK13650 cbiO cobalt transport 69.4 2.9 6.3E-05 30.2 1.4 19 1-19 38-56 (279)
416 PRK14266 phosphate ABC transpo 69.3 3 6.4E-05 29.2 1.5 18 1-18 34-51 (250)
417 PRK04301 radA DNA repair and r 69.3 3.4 7.4E-05 30.5 1.8 19 1-19 107-125 (317)
418 PRK13646 cbiO cobalt transport 69.3 2.9 6.3E-05 30.3 1.4 19 1-19 38-56 (286)
419 PF00406 ADK: Adenylate kinase 69.3 4.4 9.6E-05 26.2 2.2 19 2-20 2-20 (151)
420 PTZ00424 helicase 45; Provisio 69.2 3.7 8E-05 30.5 2.0 19 2-20 71-89 (401)
421 PRK14259 phosphate ABC transpo 69.2 2.9 6.3E-05 30.0 1.4 19 1-19 44-62 (269)
422 cd03300 ABC_PotA_N PotA is an 69.2 3 6.5E-05 29.0 1.5 19 1-19 31-49 (232)
423 PRK10263 DNA translocase FtsK; 69.2 3.5 7.6E-05 37.1 2.1 22 1-22 1015-1036(1355)
424 TIGR03411 urea_trans_UrtD urea 69.1 3 6.6E-05 29.0 1.5 18 1-18 33-50 (242)
425 PRK03695 vitamin B12-transport 69.0 2.6 5.7E-05 29.8 1.1 18 1-18 27-44 (248)
426 cd00880 Era_like Era (E. coli 68.8 4.6 9.9E-05 24.4 2.1 19 1-19 1-19 (163)
427 PRK08116 hypothetical protein; 68.8 4.2 9.1E-05 29.6 2.2 23 1-23 119-141 (268)
428 cd03295 ABC_OpuCA_Osmoprotecti 68.8 3.1 6.7E-05 29.1 1.5 18 1-18 32-49 (242)
429 cd03288 ABCC_SUR2 The SUR doma 68.7 3.1 6.8E-05 29.5 1.5 19 1-19 52-70 (257)
430 cd03290 ABCC_SUR1_N The SUR do 68.7 3.1 6.7E-05 28.6 1.4 18 1-18 32-49 (218)
431 PRK00279 adk adenylate kinase; 68.7 3.9 8.4E-05 28.2 1.9 20 1-20 5-24 (215)
432 cd03251 ABCC_MsbA MsbA is an e 68.7 3.2 6.8E-05 28.7 1.5 18 1-18 33-50 (234)
433 TIGR03797 NHPM_micro_ABC2 NHPM 68.6 2.9 6.2E-05 33.8 1.4 20 1-20 484-503 (686)
434 PRK10771 thiQ thiamine transpo 68.6 3.1 6.6E-05 28.9 1.4 18 1-18 30-47 (232)
435 cd01122 GP4d_helicase GP4d_hel 68.5 3.8 8.3E-05 28.9 1.9 22 1-22 35-56 (271)
436 PRK03992 proteasome-activating 68.4 3.6 7.9E-05 31.4 1.9 19 2-20 171-189 (389)
437 PRK14243 phosphate transporter 68.4 3.2 6.9E-05 29.6 1.5 18 1-18 41-58 (264)
438 cd03228 ABCC_MRP_Like The MRP 68.3 3.3 7.1E-05 27.5 1.5 18 1-18 33-50 (171)
439 PRK00771 signal recognition pa 68.2 3.9 8.4E-05 32.3 2.0 23 1-23 100-122 (437)
440 PRK13853 type IV secretion sys 68.1 3 6.6E-05 34.8 1.5 18 1-18 431-448 (789)
441 TIGR02857 CydD thiol reductant 68.1 2.2 4.7E-05 33.3 0.6 20 1-20 353-372 (529)
442 PRK13642 cbiO cobalt transport 68.1 3.2 6.9E-05 29.9 1.4 20 1-20 38-57 (277)
443 PRK11160 cysteine/glutathione 68.0 2.3 4.9E-05 33.8 0.7 20 1-20 371-390 (574)
444 PRK13548 hmuV hemin importer A 68.0 3.2 6.8E-05 29.6 1.4 18 1-18 33-50 (258)
445 PRK11231 fecE iron-dicitrate t 68.0 3.2 6.9E-05 29.3 1.4 18 1-18 33-50 (255)
446 cd00882 Ras_like_GTPase Ras-li 67.9 5.2 0.00011 23.7 2.2 19 1-19 1-19 (157)
447 PRK05201 hslU ATP-dependent pr 67.8 3.9 8.4E-05 32.7 2.0 20 1-20 55-74 (443)
448 TIGR01188 drrA daunorubicin re 67.7 3.3 7.2E-05 30.2 1.5 19 1-19 24-42 (302)
449 PRK14531 adenylate kinase; Pro 67.6 4.4 9.5E-05 27.3 2.0 20 1-20 7-26 (183)
450 CHL00181 cbbX CbbX; Provisiona 67.6 5.5 0.00012 29.4 2.6 21 2-22 65-85 (287)
451 COG1220 HslU ATP-dependent pro 67.6 3.7 7.9E-05 32.7 1.7 18 1-18 55-72 (444)
452 cd01428 ADK Adenylate kinase ( 67.5 4.1 8.8E-05 27.0 1.8 19 1-19 4-22 (194)
453 PRK09112 DNA polymerase III su 67.5 4.2 9E-05 31.0 2.0 23 1-23 50-72 (351)
454 PRK14272 phosphate ABC transpo 67.4 3.4 7.3E-05 28.9 1.4 19 1-19 35-53 (252)
455 cd03217 ABC_FeS_Assembly ABC-t 67.3 3.3 7.2E-05 28.3 1.4 19 1-19 31-49 (200)
456 COG0194 Gmk Guanylate kinase [ 67.3 3.7 8.1E-05 29.4 1.6 20 1-20 9-28 (191)
457 PRK13649 cbiO cobalt transport 67.3 3.3 7.2E-05 29.7 1.4 19 1-19 38-56 (280)
458 PRK13652 cbiO cobalt transport 67.2 3.4 7.4E-05 29.8 1.4 18 1-18 35-52 (277)
459 PRK14961 DNA polymerase III su 67.2 4.4 9.5E-05 30.6 2.1 22 1-22 43-64 (363)
460 PRK10522 multidrug transporter 67.2 3.3 7.2E-05 32.6 1.5 20 1-20 354-373 (547)
461 PRK14236 phosphate transporter 67.2 3.5 7.6E-05 29.5 1.5 19 1-19 56-74 (272)
462 PRK10253 iron-enterobactin tra 67.2 3.1 6.8E-05 29.6 1.2 18 1-18 38-55 (265)
463 PRK15112 antimicrobial peptide 67.1 3.5 7.5E-05 29.5 1.5 19 1-19 44-62 (267)
464 TIGR03743 SXT_TraD conjugative 67.0 6.9 0.00015 32.2 3.3 26 1-26 181-206 (634)
465 TIGR01351 adk adenylate kinase 67.0 4.1 8.8E-05 28.0 1.7 19 1-19 4-22 (210)
466 PHA00729 NTP-binding motif con 67.0 4.5 9.7E-05 29.4 2.0 21 1-21 22-42 (226)
467 PRK13547 hmuV hemin importer A 67.0 3.4 7.4E-05 29.9 1.4 19 1-19 32-50 (272)
468 COG3604 FhlA Transcriptional r 66.8 3.8 8.2E-05 33.6 1.8 59 1-67 251-313 (550)
469 TIGR01242 26Sp45 26S proteasom 66.8 3.7 8E-05 30.8 1.6 19 2-20 162-180 (364)
470 COG2274 SunT ABC-type bacterio 66.8 3.9 8.4E-05 34.2 1.9 20 1-20 504-523 (709)
471 PF03668 ATP_bind_2: P-loop AT 66.8 3.4 7.4E-05 31.2 1.4 16 1-16 6-21 (284)
472 cd03253 ABCC_ATM1_transporter 66.8 3.7 7.9E-05 28.4 1.5 18 1-18 32-49 (236)
473 PRK13640 cbiO cobalt transport 66.7 3.5 7.6E-05 29.8 1.4 20 1-20 38-57 (282)
474 PRK13636 cbiO cobalt transport 66.7 3.5 7.6E-05 29.8 1.4 19 1-19 37-55 (283)
475 smart00072 GuKc Guanylate kina 66.6 3.9 8.4E-05 27.6 1.6 19 1-19 7-25 (184)
476 PRK13644 cbiO cobalt transport 66.6 3.6 7.7E-05 29.7 1.4 18 1-18 33-50 (274)
477 PRK11153 metN DL-methionine tr 66.5 3.5 7.6E-05 30.9 1.4 19 1-19 36-54 (343)
478 PRK09694 helicase Cas3; Provis 66.4 5.1 0.00011 34.4 2.5 21 3-23 308-328 (878)
479 PF03266 NTPase_1: NTPase; In 66.4 4.5 9.7E-05 27.6 1.8 22 1-22 4-25 (168)
480 TIGR00635 ruvB Holliday juncti 66.4 4.5 9.7E-05 29.0 1.9 20 1-20 35-54 (305)
481 TIGR03873 F420-0_ABC_ATP propo 66.3 3.4 7.3E-05 29.2 1.3 18 1-18 32-49 (256)
482 COG5265 ATM1 ABC-type transpor 66.3 7.2 0.00016 31.6 3.2 22 2-23 295-316 (497)
483 PF01695 IstB_IS21: IstB-like 66.3 4.5 9.7E-05 27.7 1.8 23 1-23 52-74 (178)
484 PRK14532 adenylate kinase; Pro 66.2 4.2 9.1E-05 27.2 1.7 20 1-20 5-24 (188)
485 PRK11144 modC molybdate transp 66.2 3.6 7.7E-05 31.0 1.4 18 1-18 29-46 (352)
486 PRK10261 glutathione transport 66.1 3.6 7.8E-05 33.2 1.5 19 1-19 355-373 (623)
487 PRK10851 sulfate/thiosulfate t 66.1 3.6 7.9E-05 31.1 1.5 19 1-19 33-51 (353)
488 KOG0058|consensus 66.1 4.3 9.4E-05 34.3 2.0 19 2-20 500-518 (716)
489 TIGR00958 3a01208 Conjugate Tr 66.0 3.2 7E-05 33.9 1.2 20 1-20 512-531 (711)
490 PRK13637 cbiO cobalt transport 65.9 3.7 8.1E-05 29.8 1.5 19 1-19 38-56 (287)
491 PTZ00265 multidrug resistance 65.7 4.3 9.2E-05 36.4 2.0 21 1-21 1199-1219(1466)
492 PF01656 CbiA: CobQ/CobB/MinD/ 65.7 5.7 0.00012 26.0 2.2 22 2-23 5-26 (195)
493 TIGR02397 dnaX_nterm DNA polym 65.7 4.8 0.0001 29.4 2.0 22 2-23 42-63 (355)
494 TIGR01194 cyc_pep_trnsptr cycl 65.7 2.5 5.4E-05 33.5 0.5 20 1-20 373-392 (555)
495 PRK14493 putative bifunctional 65.6 5.1 0.00011 29.6 2.2 23 1-23 6-28 (274)
496 TIGR03819 heli_sec_ATPase heli 65.6 3.2 7E-05 31.5 1.1 20 1-20 183-202 (340)
497 PRK00698 tmk thymidylate kinas 65.5 5.5 0.00012 26.6 2.1 22 1-22 8-29 (205)
498 TIGR01288 nodI ATP-binding ABC 65.5 3.8 8.3E-05 29.9 1.4 19 1-19 35-53 (303)
499 PRK13898 type IV secretion sys 65.3 3.7 8E-05 34.2 1.5 20 1-20 451-470 (800)
500 PRK09302 circadian clock prote 65.2 4.7 0.0001 31.6 2.0 22 1-22 36-57 (509)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.93 E-value=1.2e-26 Score=189.94 Aligned_cols=74 Identities=34% Similarity=0.458 Sum_probs=66.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.+.. ...++++|+++ ||||||||||.+||||||||||++|+|+.+|.|
T Consensus 188 iSGESGAGKTe~tK~im~yla~~~~~~~------~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i 261 (821)
T PTZ00014 188 VSGESGAGKTEATKQIMRYFASSKSGNM------DLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGI 261 (821)
T ss_pred EEcCCCCCchHHHHHHHHHHHHhccCCC------cccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcE
Confidence 5799999999999999999998764321 15699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 262 ~G 263 (821)
T PTZ00014 262 RY 263 (821)
T ss_pred ee
Confidence 76
No 2
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.93 E-value=2.5e-26 Score=185.16 Aligned_cols=80 Identities=34% Similarity=0.472 Sum_probs=68.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCccc--CccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCC
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNR--DTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENG 76 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~--~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g 76 (80)
|.|||||||||++|++|+||+..+.+.... .......++++|+++ ||||||||||.+|+||||||||++|+|+..|
T Consensus 96 iSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g 175 (693)
T cd01377 96 ITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTG 175 (693)
T ss_pred EEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 579999999999999999999987643211 112236799999999 9999999999999999999999999999999
Q ss_pred eecC
Q psy17057 77 MVHG 80 (80)
Q Consensus 77 ~l~G 80 (80)
+|.|
T Consensus 176 ~i~G 179 (693)
T cd01377 176 KIAG 179 (693)
T ss_pred CEEE
Confidence 9876
No 3
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.93 E-value=5.6e-26 Score=183.04 Aligned_cols=78 Identities=28% Similarity=0.382 Sum_probs=68.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|+||+||+..+..... ......++++|+++ ||||||||+|.+|+||||||||++|+|+..|+|
T Consensus 91 iSGESGaGKTes~K~i~~yLa~~~~~~~~--~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i 168 (691)
T cd01380 91 VSGESGAGKTVSAKYIMRYFASVGGSDSR--EVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRI 168 (691)
T ss_pred EEcCCCCCchHHHHHHHHHHHHhcCCCcc--cccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCE
Confidence 57999999999999999999988754211 11236799999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 169 ~G 170 (691)
T cd01380 169 IG 170 (691)
T ss_pred EE
Confidence 76
No 4
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.92 E-value=7.6e-26 Score=182.39 Aligned_cols=75 Identities=49% Similarity=0.602 Sum_probs=66.8
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.... ....++++|+++ ||||||||+|.+|+||||||||++|+|+.+|.|
T Consensus 99 isGESGAGKTet~K~il~yL~~~s~~~~-----~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i 173 (692)
T cd01385 99 ISGESGSGKTESTNFLIHHLTALSQKGY-----AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMV 173 (692)
T ss_pred EecCCCCCchHHHHHHHHHHHHhccCCc-----cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCE
Confidence 5799999999999999999998764211 125699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 174 ~G 175 (692)
T cd01385 174 RG 175 (692)
T ss_pred EE
Confidence 76
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.92 E-value=8e-26 Score=181.76 Aligned_cols=72 Identities=35% Similarity=0.541 Sum_probs=65.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+... ..++++|+++ ||||||||+|.+|+||||||||++|+|+..|+|
T Consensus 91 isGESGaGKTes~K~i~~yLa~~s~~~--------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i 162 (671)
T cd01381 91 ISGESGAGKTESTKLILQYLAAISGKH--------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAI 162 (671)
T ss_pred EEcCCCCCeehHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcE
Confidence 479999999999999999999886421 4599999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 163 ~G 164 (671)
T cd01381 163 EG 164 (671)
T ss_pred EE
Confidence 76
No 6
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.92 E-value=1.2e-25 Score=190.00 Aligned_cols=76 Identities=34% Similarity=0.510 Sum_probs=68.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||.+|.||+||+...... +.....++++|+++ ||||||||+|.+||||||||||++|.|+..|.|
T Consensus 157 ISGESGAGKTe~aK~ImqYlasv~~s~----~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I 232 (1463)
T COG5022 157 ISGESGAGKTENAKRIMQYLASVTSSS----TVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEI 232 (1463)
T ss_pred EecCCCCCchHHHHHHHHHHHHhccCC----cchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCce
Confidence 579999999999999999998876542 23457899999999 999999999999999999999999999999999
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
+|
T Consensus 233 ~G 234 (1463)
T COG5022 233 CG 234 (1463)
T ss_pred ec
Confidence 86
No 7
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.92 E-value=2.5e-25 Score=179.15 Aligned_cols=71 Identities=35% Similarity=0.551 Sum_probs=65.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.+ ..++++|+++ ||||||||+|.+|+||||||||++|+|+.+|.|
T Consensus 97 isGESGaGKTe~~K~i~~yLa~~~~~---------~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i 167 (677)
T cd01383 97 ISGESGAGKTETAKIAMQYLASLGGG---------SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKI 167 (677)
T ss_pred EecCCCCCcchHHHHHHHHHHhhCCC---------CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcE
Confidence 57999999999999999999987543 3589999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 168 ~g 169 (677)
T cd01383 168 SG 169 (677)
T ss_pred EE
Confidence 76
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.92 E-value=3.2e-25 Score=177.99 Aligned_cols=73 Identities=30% Similarity=0.459 Sum_probs=66.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++++||+..+.+. ...++++|+++ ||||||||+|.+|+||||||||++|+|+.+|+|
T Consensus 91 isGESGsGKTet~K~l~~yL~~~~~~~-------~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i 163 (653)
T cd01379 91 ISGESGSGKTESAHLLVQQLTVLGKAN-------NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAV 163 (653)
T ss_pred EecCCCCCchHHHHHHHHHHHHhcCCC-------CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcE
Confidence 479999999999999999998775431 15699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 164 ~G 165 (653)
T cd01379 164 VG 165 (653)
T ss_pred EE
Confidence 76
No 9
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.91 E-value=4.7e-25 Score=178.37 Aligned_cols=72 Identities=40% Similarity=0.521 Sum_probs=65.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+...... ..++++|+++ ||||||||+|.+|+||||||||++|+|+.+|+|
T Consensus 96 isGESGaGKTes~K~il~yLa~~~~~~--------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i 167 (717)
T cd01382 96 VSGESGAGKTENTKFVLRYLTESYGSG--------QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSV 167 (717)
T ss_pred EecCCCCChhHHHHHHHHHHHhhccCC--------ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCE
Confidence 479999999999999999998765321 5699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 168 ~G 169 (717)
T cd01382 168 VG 169 (717)
T ss_pred eE
Confidence 76
No 10
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.91 E-value=4.7e-25 Score=177.51 Aligned_cols=76 Identities=30% Similarity=0.416 Sum_probs=67.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+..... ....++++|+++ ||||||||+|.+|+||||||||++|+|+.+|.|
T Consensus 93 isGESGaGKTe~~K~il~yLa~~~~~~~~----~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i 168 (674)
T cd01384 93 VSGESGAGKTETTKMLMRYLAYMGGRAGV----EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRI 168 (674)
T ss_pred EECCCCCCchhHHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcE
Confidence 46999999999999999999988643211 125799999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 169 ~G 170 (674)
T cd01384 169 SG 170 (674)
T ss_pred EE
Confidence 76
No 11
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.91 E-value=7.6e-25 Score=178.30 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=63.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.... . ....++|+++ ||||||||+|.+|+||||||||++|+|+..|.|
T Consensus 91 iSGESGAGKTe~tK~i~~yla~~~~~~~-----~-~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i 164 (767)
T cd01386 91 FLGRSGAGKTTSCKHALEYLALAAGSVD-----G-RVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQI 164 (767)
T ss_pred EecCCCCCcHHHHHHHHHHHHhccCCCC-----c-ccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcE
Confidence 5799999999999999999998764311 0 1224578888 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 165 ~G 166 (767)
T cd01386 165 AS 166 (767)
T ss_pred eE
Confidence 76
No 12
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.91 E-value=1.1e-24 Score=174.79 Aligned_cols=73 Identities=37% Similarity=0.514 Sum_probs=66.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+... ...++++|+.+ ||||||||+|.+|+||||||||++|+|+.+|+|
T Consensus 91 isGESGaGKTe~~k~il~yl~~~~~~~-------~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i 163 (679)
T cd00124 91 ISGESGAGKTENTKLIMKYLASLAGSN-------DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKI 163 (679)
T ss_pred EecCCCCCchHHHHHHHHHHHhccCCC-------cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcE
Confidence 579999999999999999999887542 25699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 164 ~g 165 (679)
T cd00124 164 SG 165 (679)
T ss_pred eE
Confidence 76
No 13
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.91 E-value=1.1e-24 Score=175.16 Aligned_cols=75 Identities=32% Similarity=0.457 Sum_probs=66.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.... ....++++|+++ ||||||||+|.+|+||||||||++|+|+..|.+
T Consensus 91 isGESGaGKTe~~K~il~yL~~~~~~~~-----~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i 165 (674)
T cd01378 91 ISGESGAGKTEAAKKIMQYIAAVSGGGQ-----KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDP 165 (674)
T ss_pred EEcCCCCCcchHHHHHHHHHHhcCCCCC-----ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCE
Confidence 4799999999999999999998865421 135699999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 166 ~g 167 (674)
T cd01378 166 VG 167 (674)
T ss_pred ee
Confidence 76
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.90 E-value=2.1e-24 Score=173.46 Aligned_cols=75 Identities=33% Similarity=0.476 Sum_probs=67.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++++||+..+.+.. ....++++|+++ ||||||||+|.+|+||||||||++|+|+.+|+|
T Consensus 97 isGESGaGKTe~~k~il~yl~~~~~~~~-----~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i 171 (677)
T smart00242 97 ISGESGAGKTENTKKIMQYLAAVSGSNT-----SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKI 171 (677)
T ss_pred EecCCCCcchHHHHHHHHHHHhhcCCCC-----ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcE
Confidence 4799999999999999999998875421 136799999999 999999999999999999999999999999998
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 172 ~g 173 (677)
T smart00242 172 VG 173 (677)
T ss_pred eE
Confidence 76
No 15
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.90 E-value=3.8e-24 Score=172.23 Aligned_cols=72 Identities=36% Similarity=0.561 Sum_probs=64.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+.+. ...++++|+++ ||||||||+|.+|+||||||||++|+|+ +|.|
T Consensus 92 isGESGaGKTe~~k~il~yl~~~~~~~-------~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i 163 (677)
T cd01387 92 ISGESGSGKTEATKLILRYLAAMNQGG-------SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVI 163 (677)
T ss_pred EEcCCCCCeehHHHHHHHHHHhhcCCC-------cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcE
Confidence 469999999999999999999886542 14699999999 9999999999999999999999999995 6887
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 164 ~G 165 (677)
T cd01387 164 VG 165 (677)
T ss_pred eE
Confidence 65
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.89 E-value=9.1e-24 Score=168.54 Aligned_cols=77 Identities=34% Similarity=0.501 Sum_probs=68.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|++|+||+..+..... .....++++|+++ ||||||||+|.+|+||||||||++|+|+.+|.+
T Consensus 90 isGeSGsGKTe~~k~il~~L~~~~~~~~~---~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~ 166 (689)
T PF00063_consen 90 ISGESGSGKTETSKLILRYLASLSSSSSS---SKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQI 166 (689)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHSSSSSS---TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSE
T ss_pred eccccccccccchHHHHHHHhhhcccccc---cccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccc
Confidence 47999999999999999999998765321 2236799999998 999999999999999999999999999999988
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
+|
T Consensus 167 ~g 168 (689)
T PF00063_consen 167 VG 168 (689)
T ss_dssp EE
T ss_pred cc
Confidence 75
No 17
>KOG0163|consensus
Probab=99.88 E-value=2.5e-23 Score=170.00 Aligned_cols=72 Identities=42% Similarity=0.619 Sum_probs=65.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
+.|||||||||.+|++|+||+.. .+. ...++++|+.+ ||||||||||++|+||||||||++|||+..|.+
T Consensus 149 VSGESGAGKTEstK~vLrYLces-~gs-------ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~V 220 (1259)
T KOG0163|consen 149 VSGESGAGKTESTKAVLRYLCES-WGS-------AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQV 220 (1259)
T ss_pred EecCCCCCcchhHHHHHHHHHhc-cCC-------CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCce
Confidence 36999999999999999998764 332 26799999999 999999999999999999999999999999988
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
+|
T Consensus 221 vG 222 (1259)
T KOG0163|consen 221 VG 222 (1259)
T ss_pred ec
Confidence 76
No 18
>KOG0164|consensus
Probab=99.88 E-value=3.4e-23 Score=168.13 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=66.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||++|+||+|+++..+..- ......+..+++++ ||||||||||.+||||||||||+.|+||-.|--
T Consensus 99 ISGESGAGKTEASK~iMqYiAAvtn~~q---q~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdP 175 (1001)
T KOG0164|consen 99 ISGESGAGKTEASKIIMQYIAAVTNASQ---QGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDP 175 (1001)
T ss_pred EecCCCCCccHHHHHHHHHHHHhcCccc---cchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCc
Confidence 6799999999999999999998876531 12246788999999 999999999999999999999999999988765
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 176 vG 177 (1001)
T KOG0164|consen 176 VG 177 (1001)
T ss_pred cc
Confidence 44
No 19
>KOG0161|consensus
Probab=99.84 E-value=1.9e-21 Score=168.64 Aligned_cols=79 Identities=34% Similarity=0.492 Sum_probs=68.8
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||.+|-|++||+........ +.+....++.+|+++ +|||||||+|.+|+|||||||||+|+|+.+|+|
T Consensus 173 iTGESGAGKTeNTKkVIqyla~va~~~~~-~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i 251 (1930)
T KOG0161|consen 173 ITGESGAGKTENTKKVIQYLASVASSSTK-KVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKI 251 (1930)
T ss_pred eecCCCCCcchhHHHHHHHHHHHhhcccc-CCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCcc
Confidence 57999999999999999999887765321 112126899999999 999999999999999999999999999999999
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 252 ~~ 253 (1930)
T KOG0161|consen 252 AG 253 (1930)
T ss_pred ch
Confidence 76
No 20
>KOG0162|consensus
Probab=99.83 E-value=3.1e-21 Score=157.30 Aligned_cols=74 Identities=30% Similarity=0.472 Sum_probs=65.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.|||||||||.+|.||+|..+.|.+. .....+.+.||++ +||+||||+|++|+||||||||+||+|+..|.-
T Consensus 109 ISGESGAGKT~aAK~IM~YIs~vS~~g-----~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP 183 (1106)
T KOG0162|consen 109 ISGESGAGKTVAAKRIMQYISRVSGGG-----EKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEP 183 (1106)
T ss_pred EecCCCCCchHHHHHHHHHHHHhccCC-----cchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCc
Confidence 579999999999999999999988542 1247799999999 999999999999999999999999999987654
Q ss_pred c
Q psy17057 79 H 79 (80)
Q Consensus 79 ~ 79 (80)
.
T Consensus 184 ~ 184 (1106)
T KOG0162|consen 184 D 184 (1106)
T ss_pred C
Confidence 3
No 21
>KOG0160|consensus
Probab=99.79 E-value=2e-20 Score=153.89 Aligned_cols=74 Identities=30% Similarity=0.434 Sum_probs=67.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
+.||||||||+++|++|+||+..... .....+|++++.+ ++|+||||+|.+|+||||||||++|+|+..|+|
T Consensus 99 vsGESGAgkT~~aK~~m~yla~v~~~------~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I 172 (862)
T KOG0160|consen 99 VSGESGAGKTETAKYLMEYLASVGGS------VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRI 172 (862)
T ss_pred eeCCCCCchhHHHHHHHHHHHHHhcc------chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhccc
Confidence 47999999999999999999888653 1237899999998 999999999999999999999999999999999
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
+|
T Consensus 173 ~G 174 (862)
T KOG0160|consen 173 SG 174 (862)
T ss_pred cc
Confidence 86
No 22
>KOG4229|consensus
Probab=99.58 E-value=1.1e-15 Score=128.17 Aligned_cols=73 Identities=38% Similarity=0.594 Sum_probs=66.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH--HHHHhcCccccCCCCCCCccceEEEEeCCCCee
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s--ileafGnAkT~~n~nSSrfGk~~~l~f~~~g~l 78 (80)
|.||||+||||.++++++||+.++.+. ..++++.|+.+ +||+||||+|.+|+||||||||++++|..+|.+
T Consensus 153 isGesgsGktest~l~~~~Ls~Lsq~~-------~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i 225 (1062)
T KOG4229|consen 153 ISGESGSGKTESTKLLWQFLSILSQGN-------NSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGII 225 (1062)
T ss_pred EecccCCCCchhhHHHHHHHHHHhcCC-------CCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCC
Confidence 469999999999999999999998531 26789999998 999999999999999999999999999999988
Q ss_pred cC
Q psy17057 79 HG 80 (80)
Q Consensus 79 ~G 80 (80)
.|
T Consensus 226 ~G 227 (1062)
T KOG4229|consen 226 EG 227 (1062)
T ss_pred Cc
Confidence 76
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=97.06 E-value=0.00022 Score=49.08 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHhc-CccccCCCCCCCccceEEEEeCCC
Q psy17057 46 WFQAFG-NAKTAHNNNSSRFGKFIQVNYKEN 75 (80)
Q Consensus 46 ileafG-nAkT~~n~nSSrfGk~~~l~f~~~ 75 (80)
..+++. ++.|..|++|||+..+++|++...
T Consensus 64 ~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~ 94 (186)
T cd01363 64 KGNANRTTAATAMNEHSSRSHSVFRIHFGGK 94 (186)
T ss_pred hccccccccccCCCCccCcccEEEEEEEEEe
Confidence 444677 899999999999999999998643
No 24
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.82 E-value=0.019 Score=39.40 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.4
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|+||.|||++++.+.++|-
T Consensus 8 l~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EESSTTSSHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 479999999999999999887
No 25
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.29 E-value=0.027 Score=35.00 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||.+++.+...+
T Consensus 4 I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998864
No 26
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.024 Score=43.21 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.||||+|||.+.+-||..|-
T Consensus 36 iVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 36 IVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEcCCCCCHHHHHHHHHhccC
Confidence 469999999999999999763
No 27
>PF12846 AAA_10: AAA-like domain
Probab=93.94 E-value=0.046 Score=38.16 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccC
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFG 26 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~ 26 (80)
|.|+||+|||.+.+.++..++.....
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~ 31 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPR 31 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999888776654
No 28
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.64 E-value=0.055 Score=38.33 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.+|||||-+++.+...|.
T Consensus 4 I~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999988774
No 29
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.40 E-value=0.046 Score=37.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|.||||||-+++.+...|-.
T Consensus 4 I~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 4 IAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhCc
Confidence 6899999999999999888853
No 30
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.20 E-value=0.061 Score=37.24 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|+||+|||-+.+.++.++..
T Consensus 6 I~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999988888753
No 31
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.09 E-value=0.065 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||-+++.+.+.+
T Consensus 11 I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 11 IAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887
No 32
>PTZ00301 uridine kinase; Provisional
Probab=92.85 E-value=0.076 Score=37.70 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|||.||||||-.++.+.+.|
T Consensus 8 IaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EECCCcCCHHHHHHHHHHHH
Confidence 69999999999998887665
No 33
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.73 E-value=0.077 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.+|+|||.+.+.+...+
T Consensus 4 i~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 4 IAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999998876
No 34
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.63 E-value=0.077 Score=35.40 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||||||.+.+.+...+
T Consensus 6 i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 57999999999999887764
No 35
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.51 E-value=0.079 Score=32.61 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=17.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||.+++.+.+.+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999998885
No 36
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.39 E-value=0.095 Score=33.21 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.+|+|||.+++.+...+
T Consensus 4 i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999887754
No 37
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.28 E-value=0.074 Score=31.83 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=19.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|++|+|||.+.+.++..+...
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCCC
Confidence 46999999999999998877554
No 38
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.27 E-value=0.12 Score=32.56 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|+|||.+...++..+..
T Consensus 4 i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999887754
No 39
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.97 E-value=0.1 Score=35.65 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|.||+|||.+.+-++..|+.
T Consensus 43 i~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 43 IAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp EE--TTSSHHHHHHHHHHHHHT
T ss_pred EEcCCCCCccHHHHHHHHHHHH
Confidence 5799999999999999888877
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.82 E-value=0.13 Score=31.25 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+-|++|+|||.+.+.+...+.
T Consensus 24 i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 24 LYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 359999999999999998774
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.45 E-value=0.18 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=17.6
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|++|.|||.+.+.+.+++
T Consensus 4 ~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECcCCCCeeHHHHHHHhhc
Confidence 4999999999999999986
No 42
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.33 E-value=0.15 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.||+|||-.++.+...|.
T Consensus 4 i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 4 IAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999988874
No 43
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=91.26 E-value=0.17 Score=30.39 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|++|+|||.+....+..+...
T Consensus 5 i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 5 LAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred EECCCCCchhHHHHHHHHHHHhc
Confidence 46899999999998888877654
No 44
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.20 E-value=0.12 Score=35.10 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=17.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||.+.+.++..+
T Consensus 10 i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 46999999999999998865
No 45
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=91.19 E-value=0.37 Score=35.41 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.++||+|||++.-+.+.+.+
T Consensus 4 i~apTGsGKT~~~~~~~l~~~ 24 (358)
T TIGR01587 4 IEAPTGYGKTEAALLWALHSI 24 (358)
T ss_pred EEeCCCCCHHHHHHHHHHHHH
Confidence 358999999999887766554
No 46
>PRK06696 uridine kinase; Validated
Probab=91.12 E-value=0.16 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.||||||-.++.+...|-
T Consensus 27 I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 27 IDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988873
No 47
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=91.09 E-value=0.14 Score=33.08 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.0
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
.++||+|||.+...++..+..
T Consensus 31 ~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 31 NAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp EESTTSSHHHHHHHHHHHHHC
T ss_pred EECCCCCcChhhhhhhhcccc
Confidence 478999999999976666655
No 48
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.04 E-value=0.14 Score=37.48 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|+||+|||..-+.++.++.+
T Consensus 18 iIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred EECCCCCCHHHHHHHHHHhhcc
Confidence 5799999999999999987744
No 49
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.97 E-value=0.19 Score=29.32 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||...+.+...|
T Consensus 4 i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 47999999999999988876
No 50
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.70 E-value=0.16 Score=37.08 Aligned_cols=22 Identities=27% Similarity=0.144 Sum_probs=19.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|+||+|||.+.+.++.++..
T Consensus 85 isG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 85 VTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred EECCCCCcHHHHHHHHHhhhCC
Confidence 5899999999999998888743
No 51
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.60 E-value=0.17 Score=38.64 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|+||||||-+-+.++.++..
T Consensus 139 I~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 139 ITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 5799999999999999998754
No 52
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.44 E-value=0.2 Score=34.58 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.||||||-..+.+...+-
T Consensus 11 I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 11 IGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 579999999999999887653
No 53
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.23 E-value=0.14 Score=36.55 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
|+|++|+|||.+.+.++.++-..
T Consensus 132 i~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 132 ISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEESTTSSHHHHHHHHHHHCHTT
T ss_pred EECCCccccchHHHHHhhhcccc
Confidence 57999999999999998876444
No 54
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.12 E-value=0.2 Score=37.25 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.7
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.+|+|||.+.+.++.++.
T Consensus 137 I~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 137 VVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999988764
No 55
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.07 E-value=0.2 Score=32.65 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|||||.+++.+...|
T Consensus 5 i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 5 ISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 47999999999999887644
No 56
>PRK08233 hypothetical protein; Provisional
Probab=90.06 E-value=0.18 Score=33.16 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=18.2
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.+|+|||-.++.+..+|.
T Consensus 8 I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 8 IAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 579999999999999888773
No 57
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=89.84 E-value=0.24 Score=36.04 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|||-||||||-.++.+...|-
T Consensus 13 IaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhC
Confidence 699999999999999988765
No 58
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.66 E-value=0.2 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|++|||||-+.+.++..+
T Consensus 30 I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 30 ISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 47999999999999887654
No 59
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.65 E-value=0.23 Score=38.27 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|+||+|||.+.+-++.|+..
T Consensus 154 I~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 154 ICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999998854
No 60
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.63 E-value=0.22 Score=37.37 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|+||||||-+-+.++.++-
T Consensus 127 i~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 127 VTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EECCCCCCHHHHHHHHHHhhC
Confidence 579999999999999888764
No 61
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.58 E-value=0.19 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.0
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
+.|+||+|||.+.++++
T Consensus 20 I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 20 ITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCCCCHHHHHHHhh
Confidence 46999999999999875
No 62
>PRK06762 hypothetical protein; Provisional
Probab=89.45 E-value=0.27 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||..++.+.+++
T Consensus 7 i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 7 IRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999999988876
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.39 E-value=0.31 Score=32.19 Aligned_cols=22 Identities=32% Similarity=0.384 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|++|+|||.++..++...+.
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHH
Confidence 5799999999988877776554
No 64
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.14 E-value=0.24 Score=30.83 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+-|++|+|||.+.+.+++-+..
T Consensus 9 i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhHH
Confidence 3599999999999999887654
No 65
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=89.09 E-value=0.37 Score=33.36 Aligned_cols=20 Identities=35% Similarity=0.252 Sum_probs=18.7
Q ss_pred CCCcCCchHHHHHHHHHHHh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~ 21 (80)
-|.||+|||.+.+.++..+.
T Consensus 29 ~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 29 FGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999988
No 66
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=89.04 E-value=0.25 Score=33.77 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|+||+|||+.+...++.
T Consensus 19 i~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 19 ITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEcCCCCCHHHHHHHHHHc
Confidence 4699999999999766664
No 67
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.00 E-value=0.27 Score=34.43 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||-.++.+...+
T Consensus 4 i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 4 ISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 68999999999999998876
No 68
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=88.91 E-value=0.17 Score=41.10 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
|-||||||||.+...++.+|-..
T Consensus 40 IvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 40 IVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred EEcCCCCCHHHHHHHHhccCCCC
Confidence 45999999999999999877443
No 69
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=88.86 E-value=0.23 Score=39.68 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH-HHHH--hcCccc-cCCCCCCCccceEE
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA-WFQA--FGNAKT-AHNNNSSRFGKFIQ 69 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s-ilea--fGnAkT-~~n~nSSrfGk~~~ 69 (80)
|.||||.||-..++.|=. .|. +..++.-.|....+.. ++|+ ||..|= ..-.+.+|.|+|-.
T Consensus 169 I~GESGtGKElvAr~IH~----~S~----R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 169 ITGESGTGKELVARAIHQ----ASP----RAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred EECCCCCcHHHHHHHHHh----hCc----ccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeE
Confidence 569999999999987722 122 1122222233322223 5664 998873 33455788898854
No 70
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.83 E-value=0.23 Score=32.55 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||...+.+++.+
T Consensus 4 i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 46999999999999988864
No 71
>PRK04182 cytidylate kinase; Provisional
Probab=88.80 E-value=0.28 Score=32.12 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|||||.+.+.+...|
T Consensus 5 i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 5 ISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 57999999999999987643
No 72
>PRK00023 cmk cytidylate kinase; Provisional
Probab=88.72 E-value=0.32 Score=34.58 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||.+++++.+.|
T Consensus 9 i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 9 IDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 47999999999999998766
No 73
>PF05729 NACHT: NACHT domain
Probab=88.57 E-value=0.4 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhcc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDF 25 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~ 25 (80)
|-|+.|+|||.+.+.++..+.....
T Consensus 5 I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 5 ISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EECCCCCChHHHHHHHHHHHHhcCc
Confidence 4699999999999999888776653
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.53 E-value=0.34 Score=31.45 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||.+++.+.+.|
T Consensus 9 l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 9 LIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 46999999999999988765
No 75
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.52 E-value=0.32 Score=36.92 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.||+|||.+.+-++.++.
T Consensus 149 I~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 149 ISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999888763
No 76
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=88.38 E-value=0.34 Score=34.00 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=18.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|.+|||||-..+.+...|-.
T Consensus 38 i~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 38 IAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred EECCCCCCHHHHHHHHHHHhhh
Confidence 5799999999999998877643
No 77
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.12 E-value=0.26 Score=31.21 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-..+.+.+.+
T Consensus 4 ~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEESTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHC
Confidence 57999999999999988654
No 78
>PRK07667 uridine kinase; Provisional
Probab=88.05 E-value=0.39 Score=33.01 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|.+|+|||-.+..+...|..
T Consensus 22 I~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 22 IDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999888743
No 79
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.98 E-value=0.29 Score=37.00 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|+||+|||.+.+.++.++
T Consensus 165 i~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 165 ISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 58999999999999888776
No 80
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.97 E-value=0.46 Score=30.25 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=17.0
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|++|.|||...+.+...+
T Consensus 5 ~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EESSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999998766
No 81
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.89 E-value=0.24 Score=37.80 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||||||.+.+.++.++
T Consensus 167 I~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 167 LCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred EECCCCccHHHHHHHHHccc
Confidence 58999999999999988765
No 82
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.68 E-value=0.64 Score=29.05 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
|-|++|.|||-.++.+++.|....
T Consensus 3 i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHh
Confidence 359999999999999988887543
No 83
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.59 E-value=0.3 Score=39.42 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.8
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
-||||||||+++.-||+-|..
T Consensus 42 VGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 42 VGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred EecCCCCccHHHHHHHHhcCC
Confidence 499999999999999997755
No 84
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.43 E-value=0.49 Score=32.54 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
|.|.+|||||.+++.+-+.|-...
T Consensus 7 ltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 7 LTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC
Confidence 469999999999999999886543
No 85
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.33 E-value=0.39 Score=31.47 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|+|||.+.+.+...|
T Consensus 3 l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 46999999999999887765
No 86
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.21 E-value=0.29 Score=36.62 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.||||+|||-+.+.+++
T Consensus 44 lVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 44 LVGESGCGKSTLGRLILG 61 (268)
T ss_pred EEecCCCCHHHHHHHHHc
Confidence 359999999999999987
No 87
>PRK10436 hypothetical protein; Provisional
Probab=87.18 E-value=0.39 Score=38.05 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|+||||||-+-|-+|.++..
T Consensus 223 vtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 223 VTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred EECCCCCChHHHHHHHHHhhCC
Confidence 5799999999999998888743
No 88
>PRK06547 hypothetical protein; Provisional
Probab=87.16 E-value=0.45 Score=32.60 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-.+..+...+
T Consensus 20 i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999887753
No 89
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.94 E-value=0.41 Score=38.52 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|+||||||.+-|-++.++-
T Consensus 321 v~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 321 VTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred EECCCCCCHHHHHHHHHHhhC
Confidence 579999999999999988873
No 90
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=86.91 E-value=0.37 Score=33.10 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|||..|||||.+...++..+
T Consensus 20 ~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 20 IAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp EES-TTSTTHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHhhhhc
Confidence 58999999999999998865
No 91
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.88 E-value=0.29 Score=32.45 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-..+.+...+
T Consensus 6 l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EECCCCCCHHHHHHHHHccC
Confidence 46999999999999998754
No 92
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.74 E-value=0.51 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||..++.+..++.
T Consensus 4 i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHH
Confidence 469999999999999998874
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.73 E-value=0.6 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+-|++|+|||-...-++.++...
T Consensus 29 l~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 29 LTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp E-B-TTSSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 46999999999999888887665
No 94
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.63 E-value=0.43 Score=33.02 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+||+.+.+.++..+
T Consensus 9 l~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 47999999999999987754
No 95
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=86.21 E-value=0.39 Score=33.76 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|+||+|||+++.-+++
T Consensus 23 i~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 23 ITGPSGIGKSELALELIK 40 (171)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999987776
No 96
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.20 E-value=0.56 Score=32.14 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.+|+|||.+.+.+...|..
T Consensus 29 i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 29 FTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999887743
No 97
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.12 E-value=0.59 Score=31.10 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||.+.+.+...|.
T Consensus 9 ~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 9 FTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999998874
No 98
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=85.87 E-value=0.61 Score=31.33 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||...+.+...+.
T Consensus 23 i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 23 LTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 579999999999999988764
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=85.87 E-value=0.61 Score=31.06 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||-..+.+...|.
T Consensus 12 i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 12 ITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEcCCCCCHHHHHHHHHHHHH
Confidence 469999999999999988875
No 100
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.86 E-value=0.61 Score=33.16 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|++|+|||-.++.+..||
T Consensus 5 IsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 5 ISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred eccCCCCChhHHHHHHHHHh
Confidence 68999999999999998876
No 101
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.85 E-value=0.52 Score=31.55 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.|+.|+|||-..+.+++.|-
T Consensus 27 l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 27 LKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEcCCCCCHHHHHHHHHHHcC
Confidence 359999999999999999873
No 102
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.78 E-value=0.55 Score=37.95 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=20.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
++|+||||||.+-|-+|.++-...
T Consensus 263 vTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 263 VTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred EeCCCCCCHHHHHHHHHHHhcCCC
Confidence 379999999999999999875543
No 103
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.66 E-value=0.4 Score=38.04 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|+||+|||-+-+.++.++-
T Consensus 247 itGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 247 VTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred EEcCCCCCHHHHHHHHHhccC
Confidence 579999999999998888764
No 104
>PRK07261 topology modulation protein; Provisional
Probab=85.63 E-value=0.58 Score=31.66 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-.++.+...+
T Consensus 5 i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 46999999999999887654
No 105
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.44 E-value=0.66 Score=34.69 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|||.+|||||-+++++..-|
T Consensus 67 IaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 67 IAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 68999999999998776544
No 106
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.36 E-value=0.7 Score=31.47 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=18.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|++|+|||.....++...+..
T Consensus 17 i~G~~GsGKT~l~~~~~~~~~~~ 39 (209)
T TIGR02237 17 IYGPPGSGKTNICMILAVNAARQ 39 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHHhC
Confidence 47999999999998777665543
No 107
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.35 E-value=0.7 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|++|+|||.+...+...+...
T Consensus 5 ~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 5 LVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC
Confidence 46999999999988887776554
No 108
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.08 E-value=0.68 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||.+++.+...|
T Consensus 4 l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 46999999999999987664
No 109
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.01 E-value=0.78 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|+.|+|||-++..+.+++...
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC
Confidence 47999999999999999988654
No 110
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.88 E-value=0.58 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+-|++|+|||-+.+.++..+-
T Consensus 48 l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 48 ITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEcCCCCCHHHHHHHHHHhcC
Confidence 359999999999998877653
No 111
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=84.75 E-value=0.68 Score=32.84 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||.+.+.+...|
T Consensus 7 i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 7 IDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 47999999999999997654
No 112
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.68 Score=39.26 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=19.1
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
+|+||.||||++|-+..+|..
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg 547 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFG 547 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcC
Confidence 799999999999999888864
No 113
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=84.63 E-value=0.43 Score=37.58 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+-|+||||||-+.+++++++-
T Consensus 360 iVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 360 IVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EECCCCCCHHHHHHHHhccCC
Confidence 359999999999999999763
No 114
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.52 E-value=0.72 Score=32.13 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.+|+|||-...-++..|..
T Consensus 11 ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 11 IAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred EECCCCChHHHHHHHHHHHHhh
Confidence 4799999999998888888754
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=84.48 E-value=0.72 Score=29.36 Aligned_cols=20 Identities=35% Similarity=0.195 Sum_probs=13.9
Q ss_pred CCCCcCCchHH-HHHHHHHHH
Q psy17057 1 MAGSTMRDKTP-FKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte-~~k~~l~~l 20 (80)
+.|++|+|||. +..+++.++
T Consensus 29 i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 29 LAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred EECCCCCchhHHHHHHHHHHh
Confidence 35899999999 444444444
No 116
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.48 E-value=0.86 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=14.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||-+---+.--|
T Consensus 28 i~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 28 ITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 46999999998876554433
No 117
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.31 E-value=0.8 Score=31.73 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
++|.+|+|||.+...++..++..
T Consensus 18 I~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 18 IAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999988777666554
No 118
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=84.24 E-value=0.81 Score=30.19 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-..+.+...+
T Consensus 8 i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999998887654
No 119
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.21 E-value=0.75 Score=34.59 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|||-||||||-...-+...|-.
T Consensus 4 ItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 4 VTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999988777643
No 120
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=84.18 E-value=0.71 Score=37.56 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
|.|.||+|||...++++..+...
T Consensus 439 I~G~tGsGKS~~~~~l~~~~~~~ 461 (785)
T TIGR00929 439 IFGPTGSGKTTLLNFLLAQMQKY 461 (785)
T ss_pred EECCCCCCHHHHHHHHHHHhhcc
Confidence 57999999999999988766543
No 121
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.17 E-value=0.81 Score=31.64 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=16.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|++|+|||.+...++...+
T Consensus 25 i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 25 VTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred EECCCCCChHHHHHHHHHHHH
Confidence 479999999998887665444
No 122
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=83.89 E-value=0.77 Score=37.61 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|+||+|||.+.+.++..+..
T Consensus 435 I~G~tGsGKS~~~~~l~~~~~~ 456 (797)
T TIGR02746 435 VVGGSGAGKSFFMQELIVDNLS 456 (797)
T ss_pred EEcCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999998876554
No 123
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=83.77 E-value=0.62 Score=34.75 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+|||.+.+.++..+
T Consensus 38 lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 38 IVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 36999999999999998754
No 124
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.71 E-value=0.74 Score=37.52 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.7
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-||||||||-+.+.++..+
T Consensus 323 VGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 323 VGESGSGKSTLARILAGLL 341 (539)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999997754
No 125
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=83.49 E-value=0.86 Score=32.89 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|++|+|||..+..++.+.+.
T Consensus 41 I~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 41 ITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred EEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999988876665443
No 126
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=83.24 E-value=0.67 Score=34.69 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+|||-+.+.++..+
T Consensus 47 ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 47 IVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EECCCCchHHHHHHHHHcCC
Confidence 46999999999999997654
No 127
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.90 E-value=0.84 Score=33.50 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.+|||||-..+.+...|
T Consensus 4 I~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 4 VAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 57999999999999887655
No 128
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.86 E-value=0.86 Score=34.33 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.||+|||-+.+.++.++.
T Consensus 153 I~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 153 VIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred EECCCCCCHHHHHHHHHHhhh
Confidence 579999999999998887753
No 129
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.81 E-value=1.1 Score=28.71 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.+.||+|||.+..+.+...+
T Consensus 19 i~aptGsGKT~~~~~~~l~~~ 39 (169)
T PF00270_consen 19 ISAPTGSGKTLAYILPALNRL 39 (169)
T ss_dssp EECSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCccHHHHHHHHHhhh
Confidence 358999999999886655433
No 130
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.72 E-value=0.77 Score=30.80 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 131
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.72 E-value=0.75 Score=34.39 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||...+.++..+
T Consensus 46 IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 46 VVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EECCCCCcHHHHHHHHHcCC
Confidence 46999999999999987643
No 132
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=82.61 E-value=1.2 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.3
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
.|+.|+|||.+...+...|..
T Consensus 5 ~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 5 TGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 577899999999999998865
No 133
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.53 E-value=0.77 Score=34.20 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||-..+.|+.-+
T Consensus 38 ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 38 LVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCCCHHHHHHHHHccC
Confidence 46999999999999987644
No 134
>PLN02796 D-glycerate 3-kinase
Probab=82.51 E-value=0.91 Score=35.04 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=18.2
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|.+|+|||-+.+.+...|.
T Consensus 105 I~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 105 ISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EECCCCCcHHHHHHHHHHHhc
Confidence 579999999999998887764
No 135
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=82.40 E-value=1.1 Score=30.82 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|+|||.....++..++.
T Consensus 24 i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 24 VYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999888776653
No 136
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=82.39 E-value=1.1 Score=30.97 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=17.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|+|||.....++...+.
T Consensus 28 i~G~~GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 28 IYGPPGSGKTNICLQLAVEAAK 49 (225)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4799999999998877766544
No 137
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=82.33 E-value=1.7 Score=29.25 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.5
Q ss_pred CCCcCCchHHHHHHHHHHHhhhc
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
-|.||.||+-++++|.++|....
T Consensus 59 HG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 59 HGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred ecCCCCcHHHHHHHHHHHHHhcc
Confidence 58999999999999999987654
No 138
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=82.08 E-value=1.1 Score=30.07 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-+++.+...+
T Consensus 7 l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 7 LNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 46999999999999887653
No 139
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=81.94 E-value=0.91 Score=29.22 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|.+|+|||-+++.+...
T Consensus 4 l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 4 VMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 4699999999999988774
No 140
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=81.90 E-value=1 Score=31.14 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|++|+|||.....++...
T Consensus 24 i~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 24 ISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHHHHh
Confidence 47999999999987665433
No 141
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.87 E-value=0.66 Score=34.31 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|.+|+|||-..+.++.++
T Consensus 149 i~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 149 ISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred EECCCCCCHHHHHHHHHccC
Confidence 57999999999999887765
No 142
>PRK08118 topology modulation protein; Reviewed
Probab=81.81 E-value=1.1 Score=30.33 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|+|||-.++.+...+
T Consensus 6 I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 6 LIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45999999999999887764
No 143
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.66 E-value=0.89 Score=30.62 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 23 i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998754
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=81.58 E-value=1 Score=37.11 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||.|||++++.+-+.|
T Consensus 489 f~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 489 FTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EECCCCccHHHHHHHHHHHh
Confidence 36999999999999998877
No 145
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.52 E-value=0.88 Score=31.33 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 35 i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 146
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=81.21 E-value=1.2 Score=30.58 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|+|++|+|||.....++...+
T Consensus 24 I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 24 IFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred EeCCCCCChhHHHHHHHHHhh
Confidence 579999999999988876543
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.10 E-value=1.5 Score=29.85 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=17.5
Q ss_pred CCCcCCchHHHHHHHHHHHh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~ 21 (80)
-|++|+|||-+.+.+.+++.
T Consensus 44 ~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 44 WGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999888764
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=81.00 E-value=1.1 Score=37.84 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|+|||++++.+..++..
T Consensus 603 f~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 603 FLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhc
Confidence 3699999999999999888753
No 149
>PRK05439 pantothenate kinase; Provisional
Probab=80.90 E-value=1.3 Score=33.59 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|||.+|+|||-++..+...|.
T Consensus 91 IaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 91 IAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 689999999999998877553
No 150
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.89 E-value=0.99 Score=30.86 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|||||-.-+++.-.
T Consensus 31 i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.83 E-value=1.4 Score=33.91 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=21.2
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhcc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDF 25 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~ 25 (80)
+-|++|.|||.+.+++++-+-..+.
T Consensus 47 iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 47 IYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred EECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3599999999999999998866644
No 152
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=80.78 E-value=1 Score=33.89 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||..+.-+.+.+
T Consensus 9 i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 9 IVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EECCCCcCHHHHHHHHHHhC
Confidence 57999999999999887765
No 153
>PRK15453 phosphoribulokinase; Provisional
Probab=80.58 E-value=1.2 Score=33.64 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|||-||||||-.+..+..-+-
T Consensus 10 ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 10 VTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 589999999999887765443
No 154
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=80.58 E-value=1 Score=32.29 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=17.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||-.++.+.+++
T Consensus 7 l~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 7 TVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEcCCCCCHHHHHHHHHHHC
Confidence 46999999999999988776
No 155
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=80.52 E-value=1 Score=30.64 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 32 l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988654
No 156
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=80.51 E-value=1 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|||||-.-+++.-.
T Consensus 33 l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3699999999999988654
No 157
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.47 E-value=0.7 Score=32.47 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=11.6
Q ss_pred CCCCcCCchHHHH
Q psy17057 1 MAGSTMRDKTPFK 13 (80)
Q Consensus 1 ~aG~sg~gKte~~ 13 (80)
+.|+||||||...
T Consensus 26 l~G~sGsGKSTL~ 38 (226)
T cd03270 26 ITGVSGSGKSSLA 38 (226)
T ss_pred EEcCCCCCHHHHH
Confidence 4699999999995
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=80.46 E-value=0.99 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999987754
No 159
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=80.46 E-value=1 Score=33.82 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+|||-..+.|+..+
T Consensus 52 lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 52 VVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred EECCCCCCHHHHHHHHHCCC
Confidence 46999999999999997643
No 160
>PLN02348 phosphoribulokinase
Probab=80.41 E-value=1.2 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|||.||||||-+++.+...|-
T Consensus 54 IaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 54 LAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999988773
No 161
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=80.40 E-value=0.99 Score=33.65 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-||||+|||-..+.++-+.
T Consensus 38 ivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 38 IVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEcCCCCCHHHHHHHHhccc
Confidence 46999999999999886643
No 162
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=80.39 E-value=1.4 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|.+|+|||-....++..|...
T Consensus 4 i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 4 IVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 46999999999999998887644
No 163
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.25 E-value=0.71 Score=35.96 Aligned_cols=20 Identities=15% Similarity=0.291 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|+||+|||-..++++..+
T Consensus 366 IvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 366 ILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 46999999999999998754
No 164
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=80.18 E-value=1.2 Score=37.49 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|+||+|||...++++..+..
T Consensus 493 I~G~tGsGKS~l~~~L~~~~~k 514 (852)
T PRK13891 493 MFGPTGAGKSTHLGIIAAQLRR 514 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 4699999999999998876543
No 165
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=80.18 E-value=1.1 Score=30.85 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||.....++..
T Consensus 24 i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999887654
No 166
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=79.99 E-value=1.2 Score=29.99 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+||+.+.+.++..+
T Consensus 7 l~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 7 LVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp EESSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 46999999999999887743
No 167
>PF13245 AAA_19: Part of AAA domain
Probab=79.96 E-value=1.7 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=16.9
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
-|..|+|||.+..-++.+++.
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 588999999777777777764
No 168
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=79.94 E-value=1.1 Score=34.02 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|+||+||||++--.+..
T Consensus 151 i~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 151 ITGESGIGKSETALELIKR 169 (308)
T ss_pred EEcCCCCCHHHHHHHHHHc
Confidence 4699999999999866653
No 169
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.93 E-value=0.88 Score=28.65 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||..-+.+...
T Consensus 16 i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEESTTSSHHHHHHHHTTS
T ss_pred EEccCCCccccceeeeccc
Confidence 4699999999998877543
No 170
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=79.92 E-value=0.9 Score=30.76 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+|||-+.+++...+
T Consensus 7 l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 36999999999999986643
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.80 E-value=1.7 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=16.4
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
-|.||+||||+.-.++.+++.
T Consensus 3 ~g~TGsGKT~v~l~~i~~~l~ 23 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIEKVLA 23 (505)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 489999999998666665544
No 172
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.80 E-value=1.1 Score=30.72 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 28 i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 28 IFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999987653
No 173
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=79.59 E-value=1.3 Score=29.52 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.+|+|||.....++.+++.
T Consensus 37 i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 37 IAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp EEECSTSSHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999988887764
No 174
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=79.59 E-value=1.1 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 175
>PLN02318 phosphoribulokinase/uridine kinase
Probab=79.56 E-value=1 Score=37.52 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||||||-..+.+...+
T Consensus 70 IaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 70 VAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred EECCCCCcHHHHHHHHHhhC
Confidence 68999999999999998765
No 176
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=79.56 E-value=1.2 Score=37.29 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.||+|||.+.+.++..+..
T Consensus 454 I~G~sGsGKS~l~k~l~~~~~~ 475 (844)
T PRK13721 454 VCGTSGAGKTGLIQPLIRSVLD 475 (844)
T ss_pred EEcCCCCCHHHHHHHHHHhhhc
Confidence 4699999999999999876543
No 177
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=79.53 E-value=1.2 Score=29.09 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||-+...|...|
T Consensus 24 i~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 24 IYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 46999999999997764444
No 178
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.47 E-value=1.7 Score=31.02 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=18.3
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
.|++|.|||-+++.+.+.|..
T Consensus 48 ~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 48 KGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 599999999999999887643
No 179
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.44 E-value=1.2 Score=30.40 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 31 LLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 180
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.42 E-value=1.2 Score=30.54 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 35 l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEcCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 181
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=79.40 E-value=1.1 Score=31.13 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 31 LIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999998864
No 182
>PRK05973 replicative DNA helicase; Provisional
Probab=79.37 E-value=1.5 Score=31.97 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|+|.+|+|||...-.++...+.
T Consensus 69 IaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 69 LGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred EEeCCCCCHHHHHHHHHHHHHh
Confidence 5899999999998887776654
No 183
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=79.26 E-value=1.6 Score=30.16 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
++|++|+|||.....++...+
T Consensus 21 i~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 21 VIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 479999999998776665443
No 184
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=79.23 E-value=1.4 Score=30.67 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.|..|+|||-..+.++..+.
T Consensus 6 i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 6 VAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EECCCCCCHHHHHHHHHHhhC
Confidence 479999999999999988764
No 185
>PRK07429 phosphoribulokinase; Provisional
Probab=79.09 E-value=1.3 Score=33.44 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||||||-..+.+...|
T Consensus 13 I~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 13 VAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred EECCCCCCHHHHHHHHHhHh
Confidence 58999999999999887765
No 186
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.06 E-value=1.2 Score=30.64 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 187
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=78.99 E-value=1.9 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=16.5
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
.|.||+|||-+.+.+...|
T Consensus 1 ~G~sGsGKSTla~~la~~l 19 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh
Confidence 4899999999999887765
No 188
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.97 E-value=1.1 Score=30.64 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 30 l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 30 IVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 4699999999999987553
No 189
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=78.96 E-value=1.2 Score=31.26 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 32 i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988643
No 190
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=78.87 E-value=1.5 Score=37.13 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.||||||.+.+.++..+..
T Consensus 480 I~G~TGSGKS~l~~~li~q~~~ 501 (893)
T TIGR03744 480 ILGPTGAGKSATLTNLLMQVMA 501 (893)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999988776543
No 191
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.87 E-value=1.2 Score=30.86 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-..+++.-.
T Consensus 32 i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 192
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.74 E-value=1.5 Score=29.04 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|+|||..++.+...+
T Consensus 4 i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 4 VLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 46999999999988877654
No 193
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.71 E-value=1.6 Score=31.97 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|.+|+|||-+..-+..++...
T Consensus 199 ~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 46999999998888777777543
No 194
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=78.70 E-value=1.3 Score=33.91 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|+||+||||++-=+++.
T Consensus 150 ItG~SG~GKSElALeLi~r 168 (308)
T COG1493 150 ITGPSGAGKSELALELIKR 168 (308)
T ss_pred EECCCCCCHhHHHHHHHHh
Confidence 5699999999999877663
No 195
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=78.67 E-value=1.3 Score=30.83 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-++++-.
T Consensus 18 l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 18 ILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 196
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=78.59 E-value=1.4 Score=32.31 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|.||||||-.-|+|+.-
T Consensus 33 l~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 33 LTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 4699999999999999763
No 197
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.59 E-value=1.3 Score=30.76 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 36 l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988654
No 198
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=78.58 E-value=1.3 Score=30.20 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 32 i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988664
No 199
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.55 E-value=1.3 Score=30.27 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 30 i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 30 LLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 200
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=78.49 E-value=1.3 Score=30.22 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988764
No 201
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=78.47 E-value=1.3 Score=35.65 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=18.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.||+|||-+++.+.++|
T Consensus 289 i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 289 IDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 57999999999999998877
No 202
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.41 E-value=1.3 Score=30.25 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.-.
T Consensus 32 l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 32 IEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 203
>PLN02840 tRNA dimethylallyltransferase
Probab=78.30 E-value=1.3 Score=34.94 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||.+++.+.+.+
T Consensus 26 I~GptgsGKTtla~~La~~~ 45 (421)
T PLN02840 26 ISGPTGAGKSRLALELAKRL 45 (421)
T ss_pred EECCCCCCHHHHHHHHHHHC
Confidence 58999999999999888876
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.26 E-value=0.94 Score=37.09 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.3
Q ss_pred CCCCcCCchHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVV 16 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~ 16 (80)
+.||||||||.+---+
T Consensus 27 lTGETGAGKSIiidAl 42 (557)
T COG0497 27 LTGETGAGKSIIIDAL 42 (557)
T ss_pred EecCCCCcHhHHHHHH
Confidence 4799999999887655
No 205
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=78.20 E-value=1.3 Score=30.28 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 35 i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 35 IIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998854
No 206
>PRK03839 putative kinase; Provisional
Probab=78.20 E-value=1.7 Score=28.97 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|-+|+|||-..+.+.+.+
T Consensus 5 l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 5 ITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999999887764
No 207
>PRK02496 adk adenylate kinase; Provisional
Probab=78.16 E-value=1.7 Score=29.04 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|+|||..++.+...+
T Consensus 6 i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999999987754
No 208
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.13 E-value=1.7 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.6
Q ss_pred CCCcCCchHHHHHHHHHHHhhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~ 23 (80)
-|++|.|||.+++.+.+.+...
T Consensus 64 ~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 64 TGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred EcCCCCCHHHHHHHHHHHHHHc
Confidence 5999999999998888877543
No 209
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=78.06 E-value=1.4 Score=30.29 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 29 i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 29 IMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999998664
No 210
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.96 E-value=1.4 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++...
T Consensus 29 l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 211
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.95 E-value=1.4 Score=30.78 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 212
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=77.90 E-value=0.91 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|+||+|||-..++++.++
T Consensus 381 IvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 381 LVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 45999999999999999976
No 213
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=77.85 E-value=1.4 Score=30.42 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-+++.-.+
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 46999999999999887654
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=77.73 E-value=1.8 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|++|+|||..+..++...
T Consensus 26 I~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 26 LSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999877665543
No 215
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=77.71 E-value=1.7 Score=36.33 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.||+|||...++++..+..
T Consensus 446 I~G~tGsGKS~l~~~l~~~~~~ 467 (811)
T PRK13873 446 VVGPTGAGKSVLLALMALQFRR 467 (811)
T ss_pred EECCCCCCHHHHHHHHHHHhhh
Confidence 4699999999999998775543
No 216
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=77.70 E-value=1.4 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||...+++.-.+
T Consensus 38 l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EECCCCCCHHHHHHHHhCcc
Confidence 46999999999999887654
No 217
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.70 E-value=1.4 Score=31.00 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||...+++.-.
T Consensus 36 I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 36 FIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 4699999999999988653
No 218
>PLN02165 adenylate isopentenyltransferase
Probab=77.62 E-value=1.5 Score=33.73 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.||+|||..+..+.+.+
T Consensus 48 IiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 48 IMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred EECCCCCcHHHHHHHHHHHc
Confidence 57999999999998876654
No 219
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=77.58 E-value=1.8 Score=29.56 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|-||+|+||+.+++.|-.
T Consensus 27 I~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 27 ITGETGTGKELLARAIHN 44 (168)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEcCCCCcHHHHHHHHHH
Confidence 359999999999998833
No 220
>PRK08356 hypothetical protein; Provisional
Probab=77.54 E-value=1.4 Score=30.11 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|.+||||+..++++-.
T Consensus 10 ~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 10 VVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999998854
No 221
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=77.46 E-value=1.5 Score=29.82 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 31 VTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999987653
No 222
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.40 E-value=1.4 Score=30.90 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 34 LMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988653
No 223
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.30 E-value=2.3 Score=29.36 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=16.9
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|++|+|||-..+.+.+.+
T Consensus 48 ~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 48 WGEAGSGRSHLLQALVADA 66 (227)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999888765
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=77.25 E-value=1.7 Score=36.46 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|+||.|||++++.+.++|..
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcC
Confidence 3699999999999999998853
No 225
>PRK06761 hypothetical protein; Provisional
Probab=77.22 E-value=1.6 Score=32.67 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=19.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.+|+|||-+.+.+..+|..
T Consensus 8 I~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 8 IEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred EECCCCCCHHHHHHHHHHhcCc
Confidence 4799999999999999998853
No 226
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=77.22 E-value=1.4 Score=30.57 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 31 i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 31 IMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988654
No 227
>PRK06217 hypothetical protein; Validated
Probab=77.19 E-value=1.7 Score=29.30 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|-+|||||-.++.+...|
T Consensus 6 i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 6 ITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 46999999999999887754
No 228
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.17 E-value=1.5 Score=29.83 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 32 LKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998865
No 229
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=77.16 E-value=1.5 Score=29.81 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999998888653
No 230
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=77.11 E-value=1.5 Score=30.24 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 39 l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 39 LSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988664
No 231
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=77.10 E-value=1.5 Score=30.61 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 16 i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 16 LIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988654
No 232
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=76.98 E-value=1.9 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=19.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|++|.|||-+.+.++..|..
T Consensus 45 I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 45 IYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999998754
No 233
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=76.95 E-value=1.5 Score=30.08 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 36 i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 36 LVGESGSGKSTLARAILGL 54 (228)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 234
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.87 E-value=1.7 Score=36.48 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=17.2
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
.|+||.|||++++.+-+.|
T Consensus 494 ~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 494 AGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 6999999999999988876
No 235
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=76.85 E-value=1.5 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.--
T Consensus 17 i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 17 LVGESGSGKSLTCLAILGL 35 (230)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=76.73 E-value=2.2 Score=30.70 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCCcCCchHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~ 19 (80)
-|++|.|||.+++.+-+.
T Consensus 27 ~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 27 RGPAGTGKTTLAMHVARK 44 (262)
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 599999999999988664
No 237
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=76.71 E-value=3.4 Score=36.92 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=13.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
++|+||+|||.. +=+++...
T Consensus 94 I~GeTGSGKTTq---lPq~lle~ 113 (1294)
T PRK11131 94 VAGETGSGKTTQ---LPKICLEL 113 (1294)
T ss_pred EECCCCCCHHHH---HHHHHHHc
Confidence 479999999983 34444443
No 238
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=76.70 E-value=1.9 Score=28.55 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
+.|.+++|||-....++.+|....
T Consensus 5 VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 5 VVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhHcC
Confidence 358999999999999999997544
No 239
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=76.67 E-value=1.5 Score=30.53 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 32 l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988764
No 240
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=76.61 E-value=1.5 Score=30.80 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 31 LIGPSGSGKSTILRILMT 48 (252)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 241
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=76.61 E-value=1.6 Score=29.71 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 31 FLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 242
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=76.61 E-value=1.6 Score=30.37 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 40 l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 243
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=76.55 E-value=1.6 Score=29.49 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+-|++|+|||-.-+++.-
T Consensus 29 i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 359999999999998865
No 244
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.47 E-value=1.6 Score=29.56 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-..+++.-
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 369999999999998865
No 245
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=76.46 E-value=1.4 Score=34.70 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||-..++++..+
T Consensus 374 IvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 374 LVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 46999999999999998854
No 246
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=76.46 E-value=1.6 Score=30.58 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 247
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=76.43 E-value=1.6 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=16.1
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
.|+.|.||||+.|-+-+.|
T Consensus 38 ~GpagtGKtetik~La~~l 56 (231)
T PF12774_consen 38 SGPAGTGKTETIKDLARAL 56 (231)
T ss_dssp ESSTTSSHHHHHHHHHHCT
T ss_pred cCCCCCCchhHHHHHHHHh
Confidence 5999999999999876644
No 248
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=76.42 E-value=1.6 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999988754
No 249
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=76.39 E-value=1.6 Score=29.76 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 31 LTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998755
No 250
>PRK04040 adenylate kinase; Provisional
Probab=76.37 E-value=1.8 Score=29.88 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=17.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||-..+.+...|
T Consensus 7 v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 7 VTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHh
Confidence 46999999999999988876
No 251
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=76.34 E-value=1.9 Score=29.42 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|.+|+|||-+.+.+...+
T Consensus 8 l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 8 LMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 35899999999999887754
No 252
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=76.33 E-value=1.6 Score=30.88 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 37 i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 37 IVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 253
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=76.30 E-value=1.6 Score=33.22 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|+||+|||+++--++..
T Consensus 151 i~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 151 ITGKSGVGKSETALELINR 169 (304)
T ss_pred EEcCCCCCHHHHHHHHHHc
Confidence 5799999999998866653
No 254
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=76.30 E-value=1.7 Score=32.86 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.7
Q ss_pred CCCcCCchHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~ 18 (80)
-||||+||+-++|.|.-
T Consensus 39 VGESGSGKSLiAK~Ic~ 55 (330)
T COG4170 39 VGESGSGKSLIAKAICG 55 (330)
T ss_pred eccCCCchhHHHHHHhc
Confidence 59999999999998743
No 255
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.25 E-value=1.6 Score=30.44 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 256
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=76.23 E-value=1.4 Score=31.42 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||...+++.-
T Consensus 42 i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 42 LIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999998865
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=76.21 E-value=1.6 Score=29.24 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 30 l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 30 ILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999998888755
No 258
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=76.18 E-value=1.7 Score=30.38 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-..+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 259
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=76.17 E-value=1.6 Score=30.19 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 31 VLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999987653
No 260
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=76.07 E-value=1.7 Score=31.66 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.8
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
|.|+||+||+...|.+-
T Consensus 34 itGPSG~GKStllk~va 50 (223)
T COG4619 34 ITGPSGCGKSTLLKIVA 50 (223)
T ss_pred EeCCCCccHHHHHHHHH
Confidence 56999999999999773
No 261
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=76.04 E-value=2.2 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.+|+|||..+..++...+.
T Consensus 30 i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 30 IEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred EECCCCCChHHHHHHHHHHHHh
Confidence 4799999999999888665443
No 262
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.87 E-value=1.7 Score=29.78 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 33 LTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 263
>PRK10908 cell division protein FtsE; Provisional
Probab=75.84 E-value=1.7 Score=29.97 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 459999999999998864
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=75.83 E-value=1.7 Score=29.70 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 31 VTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999987653
No 265
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.83 E-value=2.1 Score=30.83 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+-|++|+|||.+...+.+.+...
T Consensus 41 l~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 41 VQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred EECCCCCCHHHHHHHHHHHhcCc
Confidence 35999999999999998887543
No 266
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.76 E-value=1.7 Score=30.18 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+-|++|+|||-.-+++.-.
T Consensus 31 l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3599999999999988653
No 267
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.72 E-value=1.7 Score=30.54 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 33 LIGASGCGKSTFLRCFNR 50 (246)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998865
No 268
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=75.66 E-value=1.8 Score=29.91 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 41 i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 41 LIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4699999999999988654
No 269
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=75.61 E-value=1.7 Score=30.86 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 44 i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 44 FIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999998654
No 270
>PLN02200 adenylate kinase family protein
Probab=75.59 E-value=2.1 Score=30.64 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=16.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||..++.+.+.+
T Consensus 48 I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 48 VLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 47999999999988777654
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=75.52 E-value=1.8 Score=29.00 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 33 LLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999998888754
No 272
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=75.42 E-value=2.3 Score=30.20 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.|++|+|||..+..++..++
T Consensus 29 i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 29 IEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 469999999999644433343
No 273
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=75.36 E-value=1.8 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||...+++...
T Consensus 11 l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 11 LLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 274
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=75.34 E-value=1.8 Score=30.44 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 34 IVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999998877653
No 275
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=75.29 E-value=2.1 Score=33.22 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|+.|+|||.++..+.+.|-.
T Consensus 83 L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 83 LLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 4799999999999999887744
No 276
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=75.28 E-value=1.8 Score=30.43 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 37 i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 37 LIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998865
No 277
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=75.24 E-value=1.9 Score=31.62 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||.+.+-.++
T Consensus 38 l~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 38 LVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EESSTTSSHHHHHHHHHH
T ss_pred EECCCCCchhHHHHhhhc
Confidence 369999999998887665
No 278
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.13 E-value=2 Score=36.12 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|.|||++++.+-.++..
T Consensus 600 f~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 3699999999999999887753
No 279
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=75.12 E-value=1.8 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 33 IVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999998888643
No 280
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=75.12 E-value=2.1 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.|++|.|||++++.+-..|.
T Consensus 601 f~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 601 LVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 369999999999999888774
No 281
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=75.11 E-value=1.8 Score=30.33 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 36 LIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998854
No 282
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=75.08 E-value=1.9 Score=30.24 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+.+.-.
T Consensus 31 l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 31 LLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999988653
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.07 E-value=1.8 Score=28.83 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.0
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 31 LLGPNGAGKTTLIKIILG 48 (173)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999998887744
No 284
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=75.06 E-value=2.3 Score=28.10 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCcCCchHHHHHHHHHHH
Q psy17057 3 GSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 3 G~sg~gKte~~k~~l~~l 20 (80)
|+=|||||..++-+++.|
T Consensus 22 GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 22 GDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp ESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHc
Confidence 788999999999999987
No 285
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=75.04 E-value=1.9 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
+.|.+|+|||-..+.+.
T Consensus 4 l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 4 FAGRSNVGKSSLINALT 20 (170)
T ss_pred EEcCCCCCHHHHHHHHh
Confidence 46999999999999887
No 286
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=75.01 E-value=1.8 Score=32.36 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||..+.-+.+.+
T Consensus 4 i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 57999999999998887754
No 287
>PRK14530 adenylate kinase; Provisional
Probab=74.97 E-value=2.3 Score=29.38 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|||||-..+.+.+.+
T Consensus 8 i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 8 LLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 35999999999999987765
No 288
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=74.85 E-value=2.3 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|||||-.++.+.++|-
T Consensus 4 l~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 4 LTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999988874
No 289
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=74.82 E-value=1.7 Score=34.13 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||-..++++..+
T Consensus 371 IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 371 LVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 46999999999999998754
No 290
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=74.78 E-value=1.9 Score=29.77 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999888854
No 291
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.77 E-value=1.8 Score=30.66 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.-.
T Consensus 43 i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 43 LIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 292
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.69 E-value=1.9 Score=30.31 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 35 l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 35 LMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988654
No 293
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=74.66 E-value=1.9 Score=29.96 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 38 i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 38 ITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998765
No 294
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=74.66 E-value=1.9 Score=29.49 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+-|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 295
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=74.61 E-value=1.8 Score=30.34 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 36 LIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 296
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.55 E-value=1.9 Score=31.20 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||..-+++.-
T Consensus 52 I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 52 LMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998865
No 297
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=74.53 E-value=1.9 Score=30.52 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||-.-+++.-.+
T Consensus 35 i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 35 FIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 46999999999999986643
No 298
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=74.49 E-value=1.9 Score=30.26 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 34 i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 34 LIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999999865
No 299
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=74.46 E-value=2 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+.+.-.
T Consensus 33 i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 33 IIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4699999999999988653
No 300
>PRK10646 ADP-binding protein; Provisional
Probab=74.37 E-value=2.7 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=18.1
Q ss_pred CCCcCCchHHHHHHHHHHHh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~ 21 (80)
.|.=|||||..++-+++.|-
T Consensus 34 ~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 34 YGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred ECCCCCCHHHHHHHHHHHcC
Confidence 48889999999999999884
No 301
>PRK13764 ATPase; Provisional
Probab=74.37 E-value=2.2 Score=35.15 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.||+|||-+.+-++.++..
T Consensus 262 IsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 262 IAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999998888753
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.32 E-value=2 Score=28.57 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 31 LLGENGAGKSTLMKILSG 48 (163)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 303
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=74.16 E-value=1.9 Score=30.00 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 34 LVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EEeCCCCCHHHHHHHHhcc
Confidence 4699999999999988654
No 304
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.11 E-value=2 Score=30.26 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-..+++.-
T Consensus 37 i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 37 LIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999999864
No 305
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=74.04 E-value=2.8 Score=30.24 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|.|||...+.+.+.+
T Consensus 48 l~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeCcCCCCHHHHHHHHHHHh
Confidence 36999999999999887764
No 306
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=74.02 E-value=1.9 Score=32.15 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.3
Q ss_pred CCCCcCCchHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVV 16 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~ 16 (80)
|.|.+|+|||.+.+.+
T Consensus 11 i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 11 VTGLSGAGKSVALRAL 26 (288)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4699999999999977
No 307
>PRK04328 hypothetical protein; Provisional
Probab=74.01 E-value=2.7 Score=30.10 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|++|+|||.....++..-
T Consensus 28 i~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 28 LSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 47999999999877665543
No 308
>PRK13768 GTPase; Provisional
Probab=74.01 E-value=2.6 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
++|+.|+|||-+..-+..+|...
T Consensus 7 v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 7 FLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EECCCCccHHHHHHHHHHHHHhc
Confidence 47999999999999888888653
No 309
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.99 E-value=1.9 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 42 l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 42 VIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988664
No 310
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=73.97 E-value=1.8 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.8
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
|.|++|+|||.....+.
T Consensus 43 i~G~~gsGKTql~l~l~ 59 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLA 59 (256)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEEecccccchHHHHHH
Confidence 57999999999886543
No 311
>PRK13947 shikimate kinase; Provisional
Probab=73.96 E-value=2.6 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|.+|+|||.+.+.+...|
T Consensus 6 l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 6 LIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 35999999999999887654
No 312
>PRK13946 shikimate kinase; Provisional
Probab=73.85 E-value=2.4 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|-+|+|||.+.+.+-+.|
T Consensus 15 l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 15 LVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 35899999999999998765
No 313
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=73.84 E-value=2.1 Score=29.35 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 36 i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 314
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.76 E-value=2.1 Score=30.15 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 35 i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 35 LIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4699999999999998653
No 315
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=73.59 E-value=2.1 Score=28.49 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+++.-.
T Consensus 32 i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 32 ITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 316
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=73.59 E-value=2 Score=30.07 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 52 i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 52 FIGPNGAGKTTTLKILSG 69 (236)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998864
No 317
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=73.56 E-value=3 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.5
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|.+|+|||.+.+.+...+
T Consensus 10 iG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 10 VGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred ECCCCcCHHHHHHHHHHHc
Confidence 5899999999999987754
No 318
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=73.47 E-value=2.1 Score=30.76 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-++|.-.+
T Consensus 55 I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 55 IIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 46999999999999997654
No 319
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=73.45 E-value=2.2 Score=33.50 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.6
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|+||.|||++++.+...+
T Consensus 122 ~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 122 IGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ECCCCcCHHHHHHHHHHhc
Confidence 5999999999999887654
No 320
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=73.41 E-value=2.6 Score=31.32 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=19.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|++|.|||-+.+.+++.+-.
T Consensus 60 I~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 60 IYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999988744
No 321
>PRK07952 DNA replication protein DnaC; Validated
Probab=73.39 E-value=2.9 Score=30.41 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.8
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|++|.|||-++.-|..+|...
T Consensus 104 l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 104 FSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 36999999999999999988653
No 322
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.38 E-value=2.1 Score=30.08 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|.+|+|||-..+++.-
T Consensus 34 i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 34 FIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EECCCCCCHHHHHHHHhh
Confidence 469999999999999864
No 323
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=73.37 E-value=2.1 Score=29.47 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||..-+++.-.
T Consensus 36 I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 36 LTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999998888653
No 324
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=73.35 E-value=2.1 Score=30.74 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-..+++.-
T Consensus 43 i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 43 LLGRSGCGKSTLARLLVG 60 (268)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998754
No 325
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=73.24 E-value=2.3 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=14.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|.+|+|||-+...++.
T Consensus 8 ~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 8 IVGRPNVGKSTLLNALVG 25 (168)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999987776543
No 326
>PRK08727 hypothetical protein; Validated
Probab=73.22 E-value=3 Score=29.50 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|++|+|||-....+...+..
T Consensus 46 l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 46 LSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4699999999888877666544
No 327
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.17 E-value=2 Score=29.43 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 38 i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 38 VLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EECCCCCCHHHHHHHhccc
Confidence 4699999999999987554
No 328
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.12 E-value=2.2 Score=30.52 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 40 I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 40 IVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998865
No 329
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.10 E-value=2.1 Score=30.01 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 34 IVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999988865
No 330
>KOG0057|consensus
Probab=73.09 E-value=2.5 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.3
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||-+-+++++++=
T Consensus 383 IvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 579999999999999999875
No 331
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=73.00 E-value=2.2 Score=30.46 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 42 i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 42 LLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 332
>PRK14738 gmk guanylate kinase; Provisional
Probab=73.00 E-value=2.1 Score=29.69 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|.||+|||.+.+.+..
T Consensus 18 i~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 18 ISGPSGVGKDAVLARMRE 35 (206)
T ss_pred EECcCCCCHHHHHHHHHh
Confidence 369999999998887765
No 333
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.97 E-value=2.2 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 38 LIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988654
No 334
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.90 E-value=2.2 Score=29.88 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 34 LIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 4699999999999988653
No 335
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=72.88 E-value=3.4 Score=29.23 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|++|+|||-+...|.--|
T Consensus 30 IvG~NGsGKStll~Ai~~ll 49 (251)
T cd03273 30 ITGLNGSGKSNILDAICFVL 49 (251)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 35999999999988765443
No 336
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=72.83 E-value=2.3 Score=29.11 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.70 E-value=2.2 Score=27.81 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+.+.-
T Consensus 30 i~G~nGsGKStll~~l~g 47 (157)
T cd00267 30 LVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999998887744
No 338
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.70 E-value=2.2 Score=29.89 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=16.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-+++.-.+
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 35 LIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EECCCCCCHHHHHHHHhhcc
Confidence 46999999999999887643
No 339
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=72.69 E-value=2.2 Score=30.68 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 43 I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 43 VVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988654
No 340
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=72.59 E-value=2.5 Score=32.31 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=18.5
Q ss_pred CCCcCCchHHHHHHHHHHHhhhccC
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHEDFG 26 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~~~~ 26 (80)
-|+||+|||-+-|+|-+ |...+.|
T Consensus 33 iGpSGsGKTTtLkMINr-Liept~G 56 (309)
T COG1125 33 IGPSGSGKTTTLKMINR-LIEPTSG 56 (309)
T ss_pred ECCCCCcHHHHHHHHhc-ccCCCCc
Confidence 38999999999999976 4444443
No 341
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=72.58 E-value=3.5 Score=29.78 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
+.|-||||||-++..+-+-|....
T Consensus 28 ~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 28 FTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred eecCCCCCHHHHHHHHHHHHHHcC
Confidence 469999999999999888776543
No 342
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.52 E-value=2.3 Score=30.25 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||..-+++...+
T Consensus 38 I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 38 IIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 47999999999999887644
No 343
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=72.45 E-value=2.2 Score=29.67 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=14.8
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 36 LIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999998887743
No 344
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=72.44 E-value=2.2 Score=29.69 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-..+++.-
T Consensus 53 i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 53 LIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 345
>PRK14528 adenylate kinase; Provisional
Probab=72.39 E-value=2.9 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-.++.+..++
T Consensus 6 i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 6 FMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999999987654
No 346
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.38 E-value=2.4 Score=30.11 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-+++.-.+
T Consensus 38 l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 38 IIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 46999999999999987643
No 347
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=72.36 E-value=2.4 Score=29.05 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 35 i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 35 IVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4699999999999988653
No 348
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=72.34 E-value=3.1 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|-+|+|||.+.+.+-..|
T Consensus 7 ~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 7 LVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 35899999999999887754
No 349
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=72.28 E-value=2.7 Score=32.80 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|.|||.+++.+.+.+
T Consensus 113 l~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 113 LIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 35999999999999987654
No 350
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.21 E-value=2.3 Score=30.46 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 55 l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988653
No 351
>PRK14527 adenylate kinase; Provisional
Probab=72.18 E-value=2.9 Score=28.30 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|||||-.++.+...+
T Consensus 11 i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 11 FLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 46999999999998776543
No 352
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=72.16 E-value=2.4 Score=29.19 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 31 LLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998764
No 353
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=72.14 E-value=2.3 Score=28.97 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 40 l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 40 IMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999888854
No 354
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=72.10 E-value=2.3 Score=30.31 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 32 i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 32 VLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 355
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=72.03 E-value=1.8 Score=35.12 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|+||+|||-..++++..+
T Consensus 505 IvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 505 IVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 46999999999999998754
No 356
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=72.03 E-value=2.8 Score=31.72 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=17.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||-++..+..+|
T Consensus 97 I~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRL 116 (301)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 58999999999999888876
No 357
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=72.00 E-value=2.4 Score=29.16 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=14.7
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
+.|++|+|||-.-++++
T Consensus 26 l~G~nG~GKSTLl~~il 42 (176)
T cd03238 26 VTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 36999999999999874
No 358
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.85 E-value=2.4 Score=28.80 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCCCcCCchHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVL 17 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l 17 (80)
+.|++|+|||-.-+++.
T Consensus 38 l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 38 LMGESGAGKTTLLDVLA 54 (192)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 46999999999999875
No 359
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=71.72 E-value=2.4 Score=29.95 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+++.-.
T Consensus 34 l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 34 LVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988553
No 360
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=71.61 E-value=2.5 Score=28.75 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+.+.-.
T Consensus 39 i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 39 IVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988653
No 361
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.55 E-value=2.5 Score=29.70 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 35 i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 35 IIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998865
No 362
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=71.52 E-value=2.5 Score=30.24 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.-.
T Consensus 51 I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 51 LIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4699999999999988653
No 363
>PRK10869 recombination and repair protein; Provisional
Probab=71.51 E-value=1.7 Score=35.02 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=12.5
Q ss_pred CCCCcCCchHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVV 16 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~ 16 (80)
|.||||||||.+---|
T Consensus 27 itGetGaGKS~ildAi 42 (553)
T PRK10869 27 ITGETGAGKSIAIDAL 42 (553)
T ss_pred EECCCCCChHHHHHHH
Confidence 4699999999876533
No 364
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=71.44 E-value=2.5 Score=29.43 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 34 l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999988865
No 365
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.42 E-value=2.4 Score=30.50 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 51 IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 51 FIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998864
No 366
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=71.28 E-value=3.2 Score=35.24 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|.||+|||...++++..+..
T Consensus 443 I~G~sGsGKS~l~~~l~~~~~~ 464 (829)
T TIGR03783 443 ILGPSGSGKSFFTNHLVRQYYE 464 (829)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999998876544
No 367
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=71.23 E-value=2.5 Score=30.28 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|||||-.-+++.-
T Consensus 38 i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 38 IMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 368
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=71.21 E-value=3.4 Score=28.72 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCCcCCchHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~ 18 (80)
-|+||+|||-+...|+-
T Consensus 6 lG~tGsGKSs~~N~ilg 22 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILG 22 (212)
T ss_dssp ECSTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 49999999999998863
No 369
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=71.21 E-value=2.5 Score=29.94 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.-.
T Consensus 35 i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 35 LLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988653
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=71.20 E-value=3.6 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.1
Q ss_pred CCCcCCchHHHHHHHHHHHhhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~ 23 (80)
.|+.|+|||-..+.+..++...
T Consensus 5 ~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred ECCCCCcHHHHHHHHHHHHHHC
Confidence 5999999999998888876443
No 371
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=71.18 E-value=2.4 Score=30.36 Aligned_cols=18 Identities=11% Similarity=0.133 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 38 l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 38 LVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 372
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.13 E-value=2.5 Score=30.03 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 47 i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 47 LIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998864
No 373
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=71.09 E-value=2.4 Score=33.60 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||-..++++..+
T Consensus 366 IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 366 IVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 46999999999999997754
No 374
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=71.08 E-value=2.3 Score=29.65 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 32 IMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999888755
No 375
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.03 E-value=2.5 Score=29.63 Aligned_cols=18 Identities=11% Similarity=0.133 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 36 l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 36 LIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998854
No 376
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=71.00 E-value=3.4 Score=29.48 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|+.|.|||.+.+.+...+..
T Consensus 43 l~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 43 FAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred EECCCCCCHHHHHHHHHHHHcC
Confidence 3599999999999999887643
No 377
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.96 E-value=2.7 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||..-+++.-.+
T Consensus 43 l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 43 IIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 46999999999999887543
No 378
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.93 E-value=2.6 Score=30.04 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 52 i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 52 LIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998865
No 379
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.91 E-value=2.6 Score=30.16 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||...+++.-.
T Consensus 39 i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 39 FIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EECCCCCCHHHHHHHHHcc
Confidence 4699999999999988654
No 380
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.83 E-value=2.6 Score=29.02 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 42 i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 42 VQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEcCCCCCHHHHHHHHhC
Confidence 469999999999998854
No 381
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=70.78 E-value=3.4 Score=27.79 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|+.|.|||..++.+.+.+...
T Consensus 19 ~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 19 FAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EECCCCCCHHHHHHHHHHHHcCC
Confidence 36999999999999999998764
No 382
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=70.72 E-value=2.7 Score=30.09 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-+++.-.+
T Consensus 50 i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 50 FIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 46999999999999987543
No 383
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.69 E-value=2.5 Score=30.27 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 32 LVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999988754
No 384
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=70.69 E-value=3.6 Score=27.94 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|.+|+|||-....++..|...
T Consensus 6 i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999998887544
No 385
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=70.65 E-value=3.9 Score=30.82 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.7
Q ss_pred CCCCcCCchHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVV 16 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~ 16 (80)
|.|+.|+|||...+.+
T Consensus 56 vtGevGsGKTv~~Ral 71 (269)
T COG3267 56 VTGEVGSGKTVLRRAL 71 (269)
T ss_pred EEecCCCchhHHHHHH
Confidence 4699999999999943
No 386
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.63 E-value=2.6 Score=29.52 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 34 IIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988753
No 387
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=70.61 E-value=2.7 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++...
T Consensus 36 i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 36 IVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 4699999999999988663
No 388
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=70.61 E-value=3.5 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+-|++|+|||-.-+++.-.
T Consensus 1 l~G~nGsGKSTLl~~iaGl 19 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF 19 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC
Confidence 4699999999999988653
No 389
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=70.60 E-value=2.7 Score=29.24 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
++|.+|||||...+++..
T Consensus 10 itG~igsGKSt~~~~l~~ 27 (208)
T PRK14731 10 VTGGIGSGKSTVCRFLAE 27 (208)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999988754
No 390
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=70.59 E-value=3.3 Score=33.34 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.+|+|||-..+.+...+
T Consensus 217 IsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 217 FSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 68999999999999885544
No 391
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.59 E-value=2.6 Score=31.41 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-..+++.-.
T Consensus 57 I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 57 IIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988653
No 392
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=70.50 E-value=5.4 Score=33.20 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=20.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccC
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFG 26 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~ 26 (80)
|-|.||+|||....+++........+
T Consensus 185 V~GtTGsGKT~l~~~li~q~i~~g~~ 210 (643)
T TIGR03754 185 VLGTTRVGKTRLAELLITQDIRRGDV 210 (643)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 45999999999999988777665443
No 393
>PRK13695 putative NTPase; Provisional
Probab=70.36 E-value=3.6 Score=27.36 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.6
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
+.|++|+|||-..+.++..+.
T Consensus 5 ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 5 ITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 359999999999998877654
No 394
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.26 E-value=2.8 Score=28.88 Aligned_cols=19 Identities=21% Similarity=0.266 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 34 i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 34 IVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988543
No 395
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=70.18 E-value=2.8 Score=29.97 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 30 i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 30 ILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999987553
No 396
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=70.18 E-value=4.6 Score=28.07 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|..|+|||-..+++..
T Consensus 6 itG~igsGKst~~~~l~~ 23 (200)
T PRK14734 6 LTGGIGSGKSTVADLLSS 23 (200)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999988754
No 397
>PRK06526 transposase; Provisional
Probab=70.14 E-value=3.4 Score=30.00 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=18.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+-|++|+|||-++.-+...++.
T Consensus 103 l~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 103 FLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred EEeCCCCchHHHHHHHHHHHHH
Confidence 3599999999999988776654
No 398
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.10 E-value=2.8 Score=30.07 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 40 l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 40 ILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999888654
No 399
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=70.07 E-value=1.3 Score=28.62 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.0
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|-||.|+||+.+++.+-.
T Consensus 26 i~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 26 ITGEPGTGKSLLARALHR 43 (138)
T ss_dssp EECCTTSSHHHHHHCCHH
T ss_pred EEcCCCCCHHHHHHHHHh
Confidence 459999999999987744
No 400
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=70.04 E-value=2.9 Score=28.81 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+++.-.
T Consensus 45 i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 45 LVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988654
No 401
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=70.00 E-value=2.4 Score=29.65 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 38 i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 38 IMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999998765
No 402
>COG4240 Predicted kinase [General function prediction only]
Probab=69.98 E-value=4.1 Score=30.87 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhc
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHED 24 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~ 24 (80)
|.|..|+|||-++-.|.++|++..
T Consensus 55 isGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 55 ISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred eecCCCCchhhHHHHHHHHHHHhc
Confidence 569999999999999999998865
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=69.92 E-value=2.8 Score=28.85 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+-|++|+|||-.-+++.-.
T Consensus 30 l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EECCCCChHHHHHHHHHcC
Confidence 3599999999999987653
No 404
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=69.91 E-value=2.8 Score=29.94 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 35 I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 35 LLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998864
No 405
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=69.91 E-value=3.2 Score=29.10 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=16.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.+|+|||-.+..+...+
T Consensus 8 i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 8 IGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 57999999999998776643
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=69.82 E-value=3.5 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=14.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+.|.|||-+..-++.++
T Consensus 22 i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 22 IQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EE-STTSSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHh
Confidence 46999999997666666666
No 407
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=69.75 E-value=3.4 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||.....+...
T Consensus 100 i~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 100 VFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999987766543
No 408
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=69.69 E-value=2.8 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|+|||-.-+++.-.+
T Consensus 36 l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 36 IIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 46999999999999887643
No 409
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=69.62 E-value=2.9 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.0
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 31 IAGLVGNGQTELAEALFG 48 (182)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999998888754
No 410
>PLN02748 tRNA dimethylallyltransferase
Probab=69.58 E-value=2.9 Score=33.42 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|+|.||+|||..+.-+...+
T Consensus 27 i~GptgsGKs~la~~la~~~ 46 (468)
T PLN02748 27 VMGPTGSGKSKLAVDLASHF 46 (468)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 57999999999998887765
No 411
>PRK04296 thymidine kinase; Provisional
Probab=69.57 E-value=3.7 Score=28.13 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=13.1
Q ss_pred CCCCcCCchHH-HHHHHHHH
Q psy17057 1 MAGSTMRDKTP-FKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte-~~k~~l~~ 19 (80)
+.|+.|+|||. +-.++.++
T Consensus 7 itG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 7 IYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EECCCCCHHHHHHHHHHHHH
Confidence 46999999994 44555444
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=69.55 E-value=2.8 Score=27.37 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-..+.+..
T Consensus 31 i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999888754
No 413
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.43 E-value=2.9 Score=29.36 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.--
T Consensus 35 i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 35 IIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988653
No 414
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=69.36 E-value=3.7 Score=30.26 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|++|.|||.+.+.+...+
T Consensus 56 l~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 56 LYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred EECCCCccHHHHHHHHHHHh
Confidence 35999999999999887765
No 415
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.36 E-value=2.9 Score=30.21 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 38 IIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988654
No 416
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.35 E-value=3 Score=29.25 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 34 LIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998865
No 417
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=69.32 E-value=3.4 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||.....++..
T Consensus 107 i~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 107 FYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred EECCCCCCHhHHHHHHHHH
Confidence 5799999999988877544
No 418
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.26 E-value=2.9 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|||||-.-+++.-.
T Consensus 38 i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 38 IVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999998653
No 419
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=69.26 E-value=4.4 Score=26.24 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=16.0
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
=|.+||||+..++.+...+
T Consensus 2 ~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHhc
Confidence 3899999999999887754
No 420
>PTZ00424 helicase 45; Provisional
Probab=69.23 E-value=3.7 Score=30.46 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=14.5
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
.++||+|||.+.-+.+...
T Consensus 71 ~apTGsGKT~~~~l~~l~~ 89 (401)
T PTZ00424 71 QAQSGTGKTATFVIAALQL 89 (401)
T ss_pred ECCCCChHHHHHHHHHHHH
Confidence 4789999999877665543
No 421
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.23 E-value=2.9 Score=29.98 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 44 l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 44 LIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988653
No 422
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.21 E-value=3 Score=29.03 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||..-+++.-.
T Consensus 31 i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 31 LLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988553
No 423
>PRK10263 DNA translocase FtsK; Provisional
Probab=69.20 E-value=3.5 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|||-||+|||++-.-+|..|+.
T Consensus 1015 IAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1015 VAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 6899999999998888877654
No 424
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=69.07 E-value=3 Score=29.00 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 33 IIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999888865
No 425
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=68.95 E-value=2.6 Score=29.79 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 27 l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 27 LVGPNGAGKSTLLARMAG 44 (248)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999998765
No 426
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=68.84 E-value=4.6 Score=24.40 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+-|++|+|||-+.+.+...
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5699999999998876553
No 427
>PRK08116 hypothetical protein; Validated
Probab=68.83 E-value=4.2 Score=29.65 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+-|++|+|||-.+..|..+|...
T Consensus 119 l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 119 LWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred EECCCCCCHHHHHHHHHHHHHHc
Confidence 35999999999999999988654
No 428
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.76 E-value=3.1 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 32 LIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 459999999999888754
No 429
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=68.73 E-value=3.1 Score=29.49 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 52 i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 52 ICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EECCCCCCHHHHHHHHHcc
Confidence 4699999999999988664
No 430
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=68.72 E-value=3.1 Score=28.55 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 32 IVGQVGCGKSSLLLAILG 49 (218)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 359999999999998754
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=68.68 E-value=3.9 Score=28.24 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|.+|+|||..++.+.+++
T Consensus 5 v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 5 LLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 35899999999999887754
No 432
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.67 E-value=3.2 Score=28.69 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 33 LVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999997744
No 433
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=68.63 E-value=2.9 Score=33.82 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||-..|+++..+
T Consensus 484 IvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 484 IVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 46999999999999998754
No 434
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=68.56 E-value=3.1 Score=28.91 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||..-+++.-
T Consensus 30 l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 30 ILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 359999999999888754
No 435
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=68.46 E-value=3.8 Score=28.90 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.+|+|||.....++.+++.
T Consensus 35 i~g~~G~GKT~l~~~~~~~~~~ 56 (271)
T cd01122 35 LTAGTGVGKTTFLREYALDLIT 56 (271)
T ss_pred EEcCCCCCHHHHHHHHHHHHHH
Confidence 4799999999987776666543
No 436
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.44 E-value=3.6 Score=31.44 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=16.2
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|++|.|||.+++.+...+
T Consensus 171 ~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 171 YGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred ECCCCCChHHHHHHHHHHh
Confidence 5999999999999886643
No 437
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=68.40 E-value=3.2 Score=29.65 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 41 i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 41 FIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998875
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.35 E-value=3.3 Score=27.53 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.9
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+.+.-
T Consensus 33 l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 33 IVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred EECCCCCCHHHHHHHHHc
Confidence 469999999998887754
No 439
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.15 E-value=3.9 Score=32.30 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=18.4
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
|.|.+|+|||.+...+..+|...
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHc
Confidence 46999999999887777777643
No 440
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=68.14 E-value=3 Score=34.77 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|-|.||+|||...++++.
T Consensus 431 I~G~tGsGKS~l~~~l~~ 448 (789)
T PRK13853 431 IFGPIGRGKTTLMTFILA 448 (789)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 469999999999998863
No 441
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=68.10 E-value=2.2 Score=33.26 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.1
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|+||+|||-..++++..+
T Consensus 353 ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 353 LVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 35999999999999997744
No 442
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=68.10 E-value=3.2 Score=29.90 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=16.6
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||-.-+++.-.+
T Consensus 38 I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 38 IIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 47999999999999886543
No 443
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=67.97 E-value=2.3 Score=33.82 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+-|+||+|||-..++++..+
T Consensus 371 ivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 45999999999999998864
No 444
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=67.96 E-value=3.2 Score=29.55 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+-|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 33 ILGPNGAGKSTLLRALSG 50 (258)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 359999999999988865
No 445
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=67.95 E-value=3.2 Score=29.31 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 33 l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 33 LIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999998865
No 446
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=67.93 E-value=5.2 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|..|+|||-..+.+...
T Consensus 1 iiG~~~~GKStl~~~l~~~ 19 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG 19 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC
Confidence 5799999999988877553
No 447
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=67.77 E-value=3.9 Score=32.74 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|+|||++++.+-+.+
T Consensus 55 liGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 55 MIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45999999999999998865
No 448
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=67.66 E-value=3.3 Score=30.22 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|||||-.-+++.-.
T Consensus 24 l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 24 FLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3599999999999988653
No 449
>PRK14531 adenylate kinase; Provisional
Probab=67.62 E-value=4.4 Score=27.34 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=16.7
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|.+|||||-..+.+...+
T Consensus 7 i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 7 FLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45999999999999887754
No 450
>CHL00181 cbbX CbbX; Provisional
Probab=67.61 E-value=5.5 Score=29.36 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.2
Q ss_pred CCCcCCchHHHHHHHHHHHhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~ 22 (80)
-|++|.|||-+++.+.+.+..
T Consensus 65 ~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 65 TGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 599999999999999887644
No 451
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.56 E-value=3.7 Score=32.68 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|-|+||-||||++.-+.+
T Consensus 55 MIGpTGVGKTEIARRLAk 72 (444)
T COG1220 55 MIGPTGVGKTEIARRLAK 72 (444)
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 569999999999987655
No 452
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=67.50 E-value=4.1 Score=27.00 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|-|.+|+|||-.++.+...
T Consensus 4 i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 4 LLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4589999999999887664
No 453
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=67.46 E-value=4.2 Score=31.01 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=20.7
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+.|+.|.|||..++.+.++|.+.
T Consensus 50 ~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 50 FEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred eECCCCCCHHHHHHHHHHHHcCC
Confidence 46999999999999999999873
No 454
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.43 E-value=3.4 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|++|+|||-.-+++.-.
T Consensus 35 i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 35 LIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4699999999999988654
No 455
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=67.34 E-value=3.3 Score=28.26 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 31 i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 31 LMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999988887543
No 456
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=67.30 E-value=3.7 Score=29.43 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+||+-+.+.++..-
T Consensus 9 lsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 36999999999999888754
No 457
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.26 E-value=3.3 Score=29.66 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 38 l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 38 FIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999888653
No 458
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.23 E-value=3.4 Score=29.75 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=15.5
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 35 i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 35 VIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998864
No 459
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.23 E-value=4.4 Score=30.57 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+.|+.|.|||-+++.+.+.|.+
T Consensus 43 ~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 43 LSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred EecCCCCCHHHHHHHHHHHhcC
Confidence 3699999999999999998864
No 460
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=67.23 E-value=3.3 Score=32.60 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|+||+|||-..++++..+
T Consensus 354 ivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 46999999999999997743
No 461
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=67.20 E-value=3.5 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+++.-.
T Consensus 56 I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 56 FIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4699999999999998653
No 462
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=67.19 E-value=3.1 Score=29.63 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=15.1
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 38 i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 38 IIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999987754
No 463
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=67.14 E-value=3.5 Score=29.48 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 44 i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 44 IIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEcCCCCCHHHHHHHHhCC
Confidence 4699999999988887653
No 464
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=67.04 E-value=6.9 Score=32.24 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=21.0
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccC
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFG 26 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~ 26 (80)
|-|.||+|||....+++..++....+
T Consensus 181 v~G~TGsGKT~l~~~l~~q~i~~g~~ 206 (634)
T TIGR03743 181 VLGTTGVGKTRLAELLITQDIRRGDV 206 (634)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 45999999999998888887775543
No 465
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=66.98 E-value=4.1 Score=28.05 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
|.|.+|||||..++.+...
T Consensus 4 i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999999988663
No 466
>PHA00729 NTP-binding motif containing protein
Probab=66.96 E-value=4.5 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|.|.+|+|||-.++-+...+.
T Consensus 22 ItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 22 IFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999888764
No 467
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=66.95 E-value=3.4 Score=29.93 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 32 l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 32 LLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4699999999999988553
No 468
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=66.84 E-value=3.8 Score=33.63 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhhccCCcccCccchhhHHHHHHHH-HHHH--hcCccccCC-CCCCCccce
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA-WFQA--FGNAKTAHN-NNSSRFGKF 67 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~~~~~~~~~~~~~~~l~~~i~~s-ilea--fGnAkT~~n-~nSSrfGk~ 67 (80)
|-||||-||-.+++.|=+ +|+- ..++.-.+....+.. +||+ ||..|=.-. .-+.|-|||
T Consensus 251 i~GETGtGKElvAraIH~----~S~R----~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrF 313 (550)
T COG3604 251 IRGETGTGKELVARAIHQ----LSPR----RDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRF 313 (550)
T ss_pred EecCCCccHHHHHHHHHh----hCcc----cCCCceeeeccccchHHHHHHHhcccccccccchhccCcce
Confidence 459999999999998733 2332 223344455544444 7775 888776543 346778887
No 469
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.82 E-value=3.7 Score=30.77 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=16.2
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|++|.|||-+++.+...+
T Consensus 162 ~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 162 YGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999886644
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=66.80 E-value=3.9 Score=34.21 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|+||||||-..|+++..+
T Consensus 504 IvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 34999999999999997754
No 471
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=66.80 E-value=3.4 Score=31.18 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=13.2
Q ss_pred CCCCcCCchHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVV 16 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~ 16 (80)
|+|-||||||.+-+..
T Consensus 6 iTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 6 ITGLSGAGKSTALRAL 21 (284)
T ss_pred EeCCCcCCHHHHHHHH
Confidence 5799999999987653
No 472
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.76 E-value=3.7 Score=28.41 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 32 IVGPSGSGKSTILRLLFR 49 (236)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999999998854
No 473
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.74 E-value=3.5 Score=29.81 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|++|+|||-.-+++.-.+
T Consensus 38 I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 38 LIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EECCCCCcHHHHHHHHhccc
Confidence 46999999999999987654
No 474
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.66 E-value=3.5 Score=29.82 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=16.1
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+++.-.
T Consensus 37 i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 37 ILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4699999999999988664
No 475
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=66.61 E-value=3.9 Score=27.62 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|.||+||+...+.++..
T Consensus 7 l~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 7 LSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 3599999999999988776
No 476
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.58 E-value=3.6 Score=29.65 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
|.|++|+|||-.-+++.-
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 33 IIGKNGSGKSTLALHLNG 50 (274)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 469999999998888865
No 477
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=66.47 E-value=3.5 Score=30.91 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|||||-.-+++.-.
T Consensus 36 iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 36 VIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 3599999999999988653
No 478
>PRK09694 helicase Cas3; Provisional
Probab=66.45 E-value=5.1 Score=34.38 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=16.6
Q ss_pred CCcCCchHHHHHHHHHHHhhh
Q psy17057 3 GSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 3 G~sg~gKte~~k~~l~~l~~~ 23 (80)
.+||+||||++..+...|+..
T Consensus 308 ApTGsGKTEAAL~~A~~l~~~ 328 (878)
T PRK09694 308 APTGSGKTEAALAYAWRLIDQ 328 (878)
T ss_pred eCCCCCHHHHHHHHHHHHHHh
Confidence 579999999998877666543
No 479
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=66.39 E-value=4.5 Score=27.60 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.1
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
|.|+.|.|||-+-+-++.+|-.
T Consensus 4 iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHhhc
Confidence 4699999999999999998843
No 480
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.37 E-value=4.5 Score=29.05 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.0
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
+.|++|.|||-..+.+...+
T Consensus 35 l~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 36999999999999887765
No 481
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=66.35 E-value=3.4 Score=29.20 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.4
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+.|++|+|||-.-+++.-
T Consensus 32 i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 32 LLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 469999999999998854
No 482
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=7.2 Score=31.63 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=19.0
Q ss_pred CCCcCCchHHHHHHHHHHHhhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~ 23 (80)
-|+||+||+.+..++.+++-..
T Consensus 295 Vg~SG~gKsTI~rllfRFyD~~ 316 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYDVN 316 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhCCc
Confidence 4899999999999999997443
No 483
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=66.26 E-value=4.5 Score=27.71 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
+-|++|.|||-.+.-+.+.++..
T Consensus 52 l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 52 LYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEhhHhHHHHHHHHHHHHHhccC
Confidence 35899999999999999887763
No 484
>PRK14532 adenylate kinase; Provisional
Probab=66.22 E-value=4.2 Score=27.17 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=16.5
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|.+|+|||-.++.+.+.+
T Consensus 5 ~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 46999999999998887654
No 485
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=66.17 E-value=3.6 Score=30.98 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.2
Q ss_pred CCCCcCCchHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLL 18 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~ 18 (80)
+-|++|+|||-.-+++.-
T Consensus 29 l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 29 IFGRSGAGKTSLINAISG 46 (352)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 359999999999988755
No 486
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=66.12 E-value=3.6 Score=33.24 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.3
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-..+.|+..
T Consensus 355 lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 355 LVGESGSGKSTTGRALLRL 373 (623)
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4699999999999998754
No 487
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=66.11 E-value=3.6 Score=31.14 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.9
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|+||+|||-.-++|.-.
T Consensus 33 llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 33 LLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3599999999999988663
No 488
>KOG0058|consensus
Probab=66.09 E-value=4.3 Score=34.28 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=17.2
Q ss_pred CCCcCCchHHHHHHHHHHH
Q psy17057 2 AGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l 20 (80)
-|+||+|||-+..+++++.
T Consensus 500 VGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 500 VGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 3899999999999999975
No 489
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=65.95 E-value=3.2 Score=33.94 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=17.4
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|+||+|||-..++++..+
T Consensus 512 IvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 512 LVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 46999999999999998854
No 490
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.88 E-value=3.7 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+.|++|+|||-.-+++.-.
T Consensus 38 i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 38 LIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 4699999999999988653
No 491
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=65.73 E-value=4.3 Score=36.39 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHHh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLL 21 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~ 21 (80)
|-|+||+|||-+.+++++++-
T Consensus 1199 IVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1199 IVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhCC
Confidence 359999999999999999764
No 492
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=65.70 E-value=5.7 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.3
Q ss_pred CCCcCCchHHHHHHHHHHHhhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~ 23 (80)
.+|.|.|||-++-.+..+|...
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~ 26 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARK 26 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHhccccc
Confidence 5789999999999999988773
No 493
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=65.68 E-value=4.8 Score=29.36 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCCcCCchHHHHHHHHHHHhhh
Q psy17057 2 AGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 2 aG~sg~gKte~~k~~l~~l~~~ 23 (80)
.|+.|.|||.+++.+.+.|.+.
T Consensus 42 ~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 42 SGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC
Confidence 5999999999999999998654
No 494
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=65.68 E-value=2.5 Score=33.48 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=17.2
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|-|+||+|||-..+++...+
T Consensus 373 ivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 373 IVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 45999999999999998754
No 495
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=65.63 E-value=5.1 Score=29.58 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLHE 23 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~~ 23 (80)
++|.+|+|||-...-++..|...
T Consensus 6 i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 6 IVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred EECCCCCCHHHHHHHHHHHHHhC
Confidence 47999999999999999998765
No 496
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=65.59 E-value=3.2 Score=31.49 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.8
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
++|.+|+|||.+.+.++.++
T Consensus 183 i~G~tGsGKTTll~al~~~i 202 (340)
T TIGR03819 183 ISGGTGSGKTTLLSALLALV 202 (340)
T ss_pred EECCCCCCHHHHHHHHHccC
Confidence 47999999999998877654
No 497
>PRK00698 tmk thymidylate kinase; Validated
Probab=65.50 E-value=5.5 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=18.6
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
+-|..|||||-..+.+.++|-.
T Consensus 8 ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 8 IEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999888744
No 498
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=65.47 E-value=3.8 Score=29.92 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCCCcCCchHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLV 19 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~ 19 (80)
+-|++|||||-.-+++.-.
T Consensus 35 l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 35 LLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 3599999999999988653
No 499
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=65.25 E-value=3.7 Score=34.22 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.9
Q ss_pred CCCCcCCchHHHHHHHHHHH
Q psy17057 1 MAGSTMRDKTPFKLVVLLVL 20 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l 20 (80)
|.|+||+|||...++++..+
T Consensus 451 i~G~tGsGKS~l~~~l~~~~ 470 (800)
T PRK13898 451 IIGPTGAGKTVLMNFLCAQA 470 (800)
T ss_pred EECCCCCcHHHHHHHHHhhc
Confidence 46999999999999987644
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=65.23 E-value=4.7 Score=31.63 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.3
Q ss_pred CCCCcCCchHHHHHHHHHHHhh
Q psy17057 1 MAGSTMRDKTPFKLVVLLVLLH 22 (80)
Q Consensus 1 ~aG~sg~gKte~~k~~l~~l~~ 22 (80)
++|.+|+|||.....++...+.
T Consensus 36 i~G~pGsGKT~l~~qf~~~~~~ 57 (509)
T PRK09302 36 VSGTAGTGKTLFALQFLVNGIK 57 (509)
T ss_pred EEeCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999877654443
Done!