RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17057
(80 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 73.4 bits (180), Expect = 4e-17
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 47 FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKTAHNNNSSRFGKFIQVNY+ENGMV G
Sbjct: 142 LEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRG 175
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 64.5 bits (158), Expect = 5e-14
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 47 FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT NNNSSRFGKFI++++ G + G
Sbjct: 140 LEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIG 173
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 61.8 bits (151), Expect = 5e-13
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT N+NSSRFGKFI++++ G + G
Sbjct: 148 AFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAG 179
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 59.3 bits (144), Expect = 4e-12
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 48 QAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT N+NSSRFGK+I++ + ENG + G
Sbjct: 202 EAFGNAKTVRNDNSSRFGKYIKIEFDENGEICG 234
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 58.0 bits (141), Expect = 1e-11
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENG 76
AFGNAKT NNNSSRFGKFI++ + E G
Sbjct: 134 AFGNAKTVRNNNSSRFGKFIELQFDETG 161
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 57.8 bits (140), Expect = 1e-11
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 48 QAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT NNNSSRFGKF+++ + + G + G
Sbjct: 138 EAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISG 170
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 55.8 bits (135), Expect = 7e-11
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 47 FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT NNNSSRFGKFI++ + G + G
Sbjct: 134 LEAFGNAKTLRNNNSSRFGKFIEIQFDATGSIVG 167
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 55.2 bits (133), Expect = 1e-10
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 42 IVSA--WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
IV A +AFGNAKT NNNSSRFGKF+++++ E V G
Sbjct: 129 IVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVG 169
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 54.8 bits (132), Expect = 2e-10
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 48 QAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT N+NSSRFGK+I +++ + G + G
Sbjct: 132 EAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEG 164
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 54.6 bits (132), Expect = 2e-10
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 48 QAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT N+NSSRFGK+IQ+ + + G + G
Sbjct: 138 EAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIG 170
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 54.3 bits (131), Expect = 2e-10
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 39 STVIVSAWF--QAFGNAKTAHNNNSSRFGKFIQVNYKEN-GMVHG 80
I++A +AFGNAKT NNNSSRFG+F+Q+ E G+ +G
Sbjct: 220 QNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYG 264
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 52.1 bits (125), Expect = 1e-09
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 44 SAWFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+ +AFGNAKT+ N+NSSRFGK I++++ E G + G
Sbjct: 133 NPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISG 169
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 51.0 bits (123), Expect = 3e-09
Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
Query: 49 AFGNAKTAHNNNSSRFGKF--IQVNYK 73
AFGNAKT NNNSSRFGK+ IQ ++K
Sbjct: 136 AFGNAKTLRNNNSSRFGKYMEIQFDFK 162
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 48.8 bits (116), Expect = 2e-08
Identities = 19/34 (55%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 47 FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+AFGNAKT N+NSSRFGKF+++ + E G++ G
Sbjct: 133 LEAFGNAKTVRNDNSSRFGKFVEI-FLEGGVIVG 165
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 44.8 bits (106), Expect = 5e-07
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 43 VSAWFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
V++ +AFGNA+T N+NSSRFGK++++ + +G V G
Sbjct: 128 VNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVG 165
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 33.7 bits (77), Expect = 0.004
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 48 QAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78
+AFGN TA N N++RF + + +++ + G +
Sbjct: 134 EAFGNVSTALNGNATRFTQILSLDFDQTGQI 164
>gnl|CDD|217708 pfam03743, TrbI, Bacterial conjugation TrbI-like protein. Although
not essential for conjugation, the TrbI protein greatly
increase the conjugational efficiency.
Length = 186
Score = 28.7 bits (65), Expect = 0.19
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 31 DTKFFDMFSTVIVSAWFQAFGNAKTAHNNNSSRFGKFIQVNYKENGM 77
D F F ++ + G A A +++S G + +G
Sbjct: 100 DNHFGQRFGGALLLSLLSGGGQAAAASASSTSGNGNTSTLQAGGSGA 146
>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase
(CobJ/CbiH). Precorrin-3B C(17)-methyltransferase
participates in the pathway toward the biosynthesis of
cobalamin (vitamin B12). There are two distinct
cobalamin biosynthetic pathways. The aerobic pathway
requires oxygen, and cobalt is inserted late in the
pathway; the anaerobic pathway does not require oxygen,
and cobalt insertion is the first committed step towards
cobalamin synthesis. This model includes CobJ of the
aerobic pathway and CbiH of the anaerobic pathway, both
as stand-alone enzymes and when CobJ forms part of a
bifunctional enzyme. In the aerobic pathway, once CobG
has generated precorrin-3b, CobJ catalyzes the
methylation of precorrin-3b at C-17 to form precorrin-4
(the extruded methylated C-20 fragment is left attached
as an acyl group at C-1). In the corresponding anaerobic
pathway, CbiH carries out this ring contraction, using
cobalt-precorrin-3b as a substrate to generate a
tetramethylated delta-lactone.
Length = 240
Score = 28.2 bits (64), Expect = 0.34
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 31 DTKFFDMFSTVIVSAWFQAFGNAKTAHNNN 60
D + DMF+TVI+ GN++T N
Sbjct: 210 DPEEVDMFTTVII-------GNSETRVVNG 232
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 28.3 bits (63), Expect = 0.34
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 52 NAKTAHNNNSSRFGKFIQVNYKENG 76
A TA N +SSR ++++
Sbjct: 71 TAATAMNEHSSRSHSVFRIHFGGKN 95
>gnl|CDD|220424 pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family
contains many hypothetical bacterial proteins. This
family was previously the N-terminal part of the Pfam
DUF1703 (pfam08011) family before it was split into two.
This region is predicted to be an AAA-ATPase domain.
Length = 279
Score = 25.9 bits (58), Expect = 2.3
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 21 LHEDFGLLNRDTK--FFDMFSTVIVSAWFQAFGNAKTAHNNNSSRFGKFIQVNYKENGM 77
LH DF + DT + + + S W + FG + + R + I+ Y++ G
Sbjct: 81 LHIDFSAVKYDTPEELEESLNRYL-SEWEEEFGFIYEDEGSPAGRLKELIRRAYEKTGK 138
>gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a
transcription accessory factor called Tex, which has
been characterized in Bordetella pertussis and
Pseudomonas aeruginosa. The tex gene is essential in
Bortella pertusis and is named for its role in toxin
expression. Tex has two functional domains, an
N-terminal domain homologous to the Escherichia coli
maltose repression protein, which is a poorly defined
transcriptional factor, and a C-terminal S1 RNA-binding
domain. Tex is found in prokaryotes, eukaryotes, and
archaea.
Length = 68
Score = 24.5 bits (54), Expect = 3.9
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 59 NNSSRFGKFIQVNYKENGMVH 79
N + FG F+ + K++G++H
Sbjct: 9 TNVTDFGAFVDIGVKQDGLIH 29
>gnl|CDD|151664 pfam11222, DUF3017, Protein of unknown function (DUF3017). This
bacterial family of proteins with unknown function
appear to be restricted to Actinobacteria.
Length = 76
Score = 24.1 bits (53), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 15 VVLLVLLHEDFGLLNRDTKFFDMFSTVIVSA 45
V+ LVL E GLL ++ D +T V A
Sbjct: 37 VLRLVLPSERAGLLAVRSRAIDFVTTATVGA 67
>gnl|CDD|218638 pfam05559, DUF763, Protein of unknown function (DUF763). This
family consists of several uncharacterized bacterial
and archaeal proteins of unknown function.
Length = 319
Score = 24.5 bits (54), Expect = 8.0
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 46 WFQAFGNA 53
WFQAF N
Sbjct: 49 WFQAFNNV 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,908,594
Number of extensions: 290563
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 29
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)