RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17057
(80 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 65.5 bits (160), Expect = 2e-14
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+ GNAKT N+NSSRFGK+I++ + + + G
Sbjct: 205 SIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 63.9 bits (156), Expect = 5e-14
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT N+NSSRFGKFI++N+ G + G
Sbjct: 202 AFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 233
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 63.0 bits (154), Expect = 1e-13
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT NNNSSRFGKF+++++ E V G
Sbjct: 187 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVG 218
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 62.8 bits (153), Expect = 2e-13
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT NNNSS FGKFI++ + G + G
Sbjct: 224 AFGNAKTTRNNNSSEFGKFIEIQFNNAGFISG 255
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 62.3 bits (152), Expect = 2e-13
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
+ GNAKT N+NSSRFGK+I++ + + + G
Sbjct: 205 SIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 62.0 bits (151), Expect = 2e-13
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
A+GNAKT NNNSSRFGKFI++++ G + G
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAG 259
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 61.1 bits (149), Expect = 5e-13
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT NNNSSRFGKFI++ + G + G
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISG 255
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 60.6 bits (148), Expect = 7e-13
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT N+NSSRFGK++++ + G G
Sbjct: 145 AFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIG 176
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 60.7 bits (148), Expect = 8e-13
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 49 AFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
AFGNAKT N+NSSRFGKFI++++ G +
Sbjct: 229 AFGNAKTVRNDNSSRFGKFIRIHFGATGKLAS 260
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.9 bits (140), Expect = 7e-12
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 47 FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78
+AFGNAKT N+NSSRFGKFI++N+ G +
Sbjct: 230 LEAFGNAKTVKNDNSSRFGKFIRINFDVTGYI 261
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 24.5 bits (54), Expect = 4.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 59 NNSSRFGKFIQVNYKENGMVH 79
N + FG F+ + ++G+VH
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVH 683
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,154,284
Number of extensions: 51449
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 12
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)