RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17057
         (80 letters)



>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 49.0 bits (116), Expect = 4e-09
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 47  FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
            +AFGNAKT  N+NSSRFGKFI++N+   G + G
Sbjct: 152 LEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 185


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 48.2 bits (114), Expect = 8e-09
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 47  FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
            +A+GNAKT  NNNSSRFGKFI++++   G + G
Sbjct: 178 LEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAG 211


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 47.4 bits (112), Expect = 1e-08
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 46  WFQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
             +AFGNAKT  N+NSSRFGKFI++++   G +  
Sbjct: 179 LLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLAS 213


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 45.5 bits (107), Expect = 6e-08
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 47  FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
            +AFGNAKT  NNNSSRFGKFI++ +   G + G
Sbjct: 175 LEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISG 208


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 45.1 bits (106), Expect = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 47  FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMV 78
            ++ GNAKT  N+NSSRFGK+I++ + +   +
Sbjct: 141 MESIGNAKTTRNDNSSRFGKYIEIGFDKRYRI 172


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 43.5 bits (102), Expect = 3e-07
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 47  FQAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHG 80
            +AFGNAKT  N+NSSRFGK++++ +   G   G
Sbjct: 135 LEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIG 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,138
Number of extensions: 9432
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)