BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17058
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 30/293 (10%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
P+ Q G + C+ + DP + W+K + E + + AG L I + T
Sbjct: 13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
DE VY C QN+ G + +A + V + + P I + P + R
Sbjct: 73 PRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLK--VVERTRTATML 129
Query: 204 VLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
+G P P TW + P + ++ + G L+ + D+GKY C+A NSAG
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS-GALQIESSEETDQGKYECVATNSAG 188
Query: 261 ---KEVMNAYIHVLTL-PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
N Y+ V + P +I P + + PG + + C A G PMP V W++ D
Sbjct: 189 VRYSSPANLYVRVQNVAPRFSILPMSH-EIMPGGNVNITCVAVGSPMPYVKWMQ--GAED 245
Query: 317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
E D R V + V+ D+ Y C+ +S G E V + V+ P+ G
Sbjct: 246 LTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 113/288 (39%), Gaps = 65/288 (22%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
E PR P Q + G A C G+P P TW + N +F +E +
Sbjct: 5 EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
G VLR + T DE Y C+A+NS G+ ++A + VL P + + P V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
R T+ C A+G P P ++W K P D N +L S A+ I S E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILXXXXXXXXXXXXXXXXVYAVGSN 403
+C+ NSAG Y+ +N
Sbjct: 180 ECVATNSAGVR-------------------------------------------YSSPAN 196
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
+ PR ++ P+ + PG NI C A+G+ ++W +QG
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW--MQG 242
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 24/224 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGN----------VFQDYASIQVDKREMPRIRIHPNASQ 191
L I + K+D G Y C + N N + ++ V P+I + +
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG---VMGEYEPKIEVQFPETV 214
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGK 250
G ++C G P PT W R D GK ++ G+L N D G
Sbjct: 215 PAEKGTTVKLEC-FALGNPVPTILWRRAD--GKPIARKARRHKSNGILEIPNFQQEDAGS 271
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV 309
Y C+AENS GK V + P V I +V++ E + EC+A GRP PT W+
Sbjct: 272 YECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME--ESVFWECKANGRPKPTYRWL 329
Query: 310 KYIAPFDRNLERDEL-TSRAVYTIASVRESDAGQYKCIGKNSAG 352
K P L RD + + I V SDAG Y+C+ +N G
Sbjct: 330 KNGDPL---LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 29/269 (10%)
Query: 105 EGSQVTIECK-SNDPSATIKWSKDNQE-----QLPPNMIAGETLIINGITKADEGVYICS 158
E +V + C+ +P I+W + + +++ G LI N D G Y C
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 80
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP----SPTQ 214
N+ G + A +Q E + R S R VL G P +
Sbjct: 81 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV------RRGQGMVLLCGPPPHSGELSY 134
Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE----------VM 264
WI + V QE G L + D G YTC+ N+ +
Sbjct: 135 AWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 194
Query: 265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA-PFDRNLERDE 323
N + P + + E V G + LEC A G P+PT+ W + P R R +
Sbjct: 195 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 254
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAG 352
S + I + ++ DAG Y+C+ +NS G
Sbjct: 255 --SNGILEIPNFQQEDAGSYECVAENSRG 281
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 30/192 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGET---LIINGIT 148
EVQ P A +G+ V +EC + +P TI W + + + + ++ L I
Sbjct: 207 EVQF-PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 265
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA- 207
+ D G Y C +N++G ++ A Q+ PN Q DI +E
Sbjct: 266 QEDAGSYECVAENSRG---KNVAKGQLT------FYAQPNWVQII-----NDIHVAMEES 311
Query: 208 --------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
G P PT W++ + D D + E G L + D G Y C+AEN
Sbjct: 312 VFWECKANGRPKPTYRWLK-NGDPLLTRD-RIQIEQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 260 GKEVMNAYIHVL 271
G +A + V+
Sbjct: 370 GVIFSSAELSVI 381
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNS 350
+ L CE G P P + W D ++ R + ++ + DAG Y+CI NS
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 84
Query: 351 AGT 353
GT
Sbjct: 85 FGT 87
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 24/224 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGN----------VFQDYASIQVDKREMPRIRIHPNASQ 191
L I + K+D G Y C + N N + ++ V P+I + +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG---VMGEYEPKIEVQFPETV 215
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGK 250
G ++C G P PT W R D GK ++ G+L N D G
Sbjct: 216 PAEKGTTVKLEC-FALGNPVPTILWRRAD--GKPIARKARRHKSNGILEIPNFQQEDAGS 272
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV 309
Y C+AENS GK V + P V I +V++ E + EC+A GRP PT W+
Sbjct: 273 YECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME--ESVFWECKANGRPKPTYRWL 330
Query: 310 KYIAPFDRNLERDEL-TSRAVYTIASVRESDAGQYKCIGKNSAG 352
K P L RD + + I V SDAG Y+C+ +N G
Sbjct: 331 KNGDPL---LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 29/269 (10%)
Query: 105 EGSQVTIECK-SNDPSATIKWSKDNQE-----QLPPNMIAGETLIINGITKADEGVYICS 158
E +V + C+ +P I+W + + +++ G LI N D G Y C
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP----SPTQ 214
N+ G + A +Q E + R S R VL G P +
Sbjct: 82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV------RRGQGMVLLCGPPPHSGELSY 135
Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE----------VM 264
WI + V QE G L + D G YTC+ N+ +
Sbjct: 136 AWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195
Query: 265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA-PFDRNLERDE 323
N + P + + E V G + LEC A G P+PT+ W + P R R +
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 255
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAG 352
S + I + ++ DAG Y+C+ +NS G
Sbjct: 256 --SNGILEIPNFQQEDAGSYECVAENSRG 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 30/192 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGET---LIINGIT 148
EVQ P A +G+ V +EC + +P TI W + + + + ++ L I
Sbjct: 208 EVQF-PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 266
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA- 207
+ D G Y C +N++G ++ A Q+ PN Q DI +E
Sbjct: 267 QEDAGSYECVAENSRG---KNVAKGQLT------FYAQPNWVQII-----NDIHVAMEES 312
Query: 208 --------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
G P PT W++ + D D + E G L + D G Y C+AEN
Sbjct: 313 VFWECKANGRPKPTYRWLK-NGDPLLTRD-RIQIEQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 260 GKEVMNAYIHVL 271
G +A + V+
Sbjct: 371 GVIFSSAELSVI 382
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNS 350
+ L CE G P P + W D ++ R + ++ + DAG Y+CI NS
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 85
Query: 351 AGT 353
GT
Sbjct: 86 FGT 88
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 106 GSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGET---------LIINGITKADEGVY 155
G V ++C+ DP TI W K NQ+ L P I G++ L I+ + D GVY
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQK-NQQDLNP--IPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 156 ICSIQNAQGNVFQDYASIQVDK-----REMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
CS +N + A +++ R++ ++ N I G A ++C + +G P
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV--IAIEGKDAVLECCV-SGYP 249
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
P+ TW+R + + + Y LG L +N+ D G YTC+ +A +
Sbjct: 250 PPSFTWLRGEEVIQL--RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT 325
VL P PS + + + EC +G+P+PTV+W+K + P D ++
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMD-IEFECAVSGKPVPTVNWMKNGDVVIPSDYF----QIV 362
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
+ I V +SD G Y+C+ +N AG +
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAENEAGNAQ 392
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 27/271 (9%)
Query: 98 PRQQSAPEGSQVTIEC--KSNDPSATIKWSKDN----------QEQLPPNMIAGETLIIN 145
P G V + C +S+ IKW KD ++QLP + + ++ +
Sbjct: 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHS 87
Query: 146 GITKADEGVYICSIQ-NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
K DEG+Y C G++ A + V P + S T +GD ++C
Sbjct: 88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG---PLRFLSQTESITAFMGDTVLLKCE 144
Query: 205 LEAGEPSPTQTWIRPDNDGK--FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
+ G+P PT W + D G V G L+ + + GD G Y C A N A
Sbjct: 145 V-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR 203
Query: 263 VMN-AYIHVLTLPAV------TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF 315
N A + +L+ P + PS +++ G+ LEC +G P P+ +W++
Sbjct: 204 TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE-GKDAVLECCVSGYPPPSFTWLRGEEVI 262
Query: 316 DRNLERDELTSRAVYTIASVRESDAGQYKCI 346
++ L + I++V + D+G Y C+
Sbjct: 263 QLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 98 PRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQE-QLPP---NMIAGETLIINGITKADE 152
P A EG +EC S P + W + + QL +++ G L+I+ +T D
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
G Y C + N+ AS ++ P HP+ + D + +C + +G+P P
Sbjct: 288 GTYTCVVTYKNENI---SASAELTVLVPPWFLNHPSNLYAYESMD-IEFECAV-SGKPVP 342
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
T W++ +G + +Q +G LR + DEG Y C+AEN AG +A + V
Sbjct: 343 TVNWMK---NGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 19/190 (10%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATG-----DE 248
G + C E+ P W + G D + Q+L G L NI DE
Sbjct: 36 GGNVLLNCSAESDRGVPVIKWKKDGLILALGMD-DRKQQLPNGSLLIQNILHSRHHKPDE 94
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
G Y C A +++ V+ P ++ +E ++ G+ + L+CE G PMPT+
Sbjct: 95 GLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH 154
Query: 308 WVKY---IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT------EEKVI 358
W K + P + L S A+ I+ ++ D+G Y+C +N A T E +++
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGAL-QISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 359 TVAVEHRPEY 368
+ HR Y
Sbjct: 214 SDPGLHRQLY 223
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEG 153
P A E + EC S P T+ W K+ +P + ++ G L I G+ K+DEG
Sbjct: 319 PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEG 378
Query: 154 VYICSIQNAQGNVFQDYASIQVDK 177
Y C +N GN Q A + V K
Sbjct: 379 FYQCVAENEAGNA-QSSAQLIVPK 401
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 181 PRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWI----RPDNDGKFGPDVEVYQE 234
PRI HP+ IV G+ A + C E G P+PT W R + D +
Sbjct: 10 PRIVEHPS---DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 235 LGVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRP 288
G L F I G DEG Y C+A N G+ V +A + V L V V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 289 GEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRA-VYTIASVRESDAGQYKCI 346
GEP +EC+ G P PT+SW K +P D ER +T R I R+SDAG+Y C+
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER--ITIRGGKLMITYTRKSDAGKYVCV 183
Query: 347 GKNSAGTEE-KVITVAVEHRPEY 368
G N G E +V + V RP +
Sbjct: 184 GTNMVGERESEVAELTVLERPSF 206
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 105 EGSQVTIECKSND-PSATIKWSKDNQE-------------QLPPNMIAGETLIINGITKA 150
+G T+ CK+ P+ TI+W K + LP + ++ ++
Sbjct: 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI-VGDRADIQCVLEAGE 209
DEGVY+C +N G AS++V + R N S + VG+ A ++C G
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEV---AILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139
Query: 210 PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG-KEVMNAYI 268
P PT +W + D D + G L D GKY C+ N G +E A +
Sbjct: 140 PEPTISW-KKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 198
Query: 269 HVLTLPA 275
VL P+
Sbjct: 199 TVLERPS 205
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
I W+KDN+E P M E TL + +TK D G Y C N G +D S Q+
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 285
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
+E PR S+ + +C + G P W + + + KF +
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 342
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
+ + VL N++ D G YTC A N+AG + + V P P +++ G
Sbjct: 343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 401
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT---IASVRESDAGQYKCIGK 348
+ LECE G P VSW K R+ ++ ++ S T I +V +D G+Y+C
Sbjct: 402 VHLECELQGTPPFQVSWHKDKREL-RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460
Query: 349 NSAGTEEKVITVAVEHRPEY 368
N G++ V ++ ++ P +
Sbjct: 461 NDVGSDTCVGSITLKAPPRF 480
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 39/288 (13%)
Query: 106 GSQVTIECKSN-DPSATIKWSKDNQE---------QLPPNMIAGETLIINGITKADEGVY 155
G +T++CK + P I W K++ + Q N+ +L+IN + +D G Y
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA---SLVINKVDHSDVGEY 76
Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
C +N+ G V A + + +R++P +G +C + EP +
Sbjct: 77 TCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV-S 134
Query: 216 WIRPDNDGKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
W + DG+ D + L+ G+Y C A N G +A
Sbjct: 135 WYK---DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK--- 188
Query: 271 LTLPAVTITPSEYVSVRP-------GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLE 320
LTL + P + ++P GE T +C TG ++W K I P N +
Sbjct: 189 LTLSEHEVPP--FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-GGNYK 245
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
+ + A T+ V + DAGQY C N AG + + V+ P +
Sbjct: 246 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF 293
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 91/263 (34%), Gaps = 61/263 (23%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYT 252
+G+ +QC ++ G P W + + P ++ + L N + D G+YT
Sbjct: 19 IGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 253 CIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP-----GEPLTLECEATGRPMPTVS 307
C AENS G +A VL + + PS ++ G P+ EC G VS
Sbjct: 78 CKAENSVGAVASSA---VLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134
Query: 308 WVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
W K + D NL+ + + A I +S GQY C N GT
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT------------ 182
Query: 366 PEYGPISPRPGADILXXXXXXXXXXXXXXXXVYAVGSNASISCSVE--PPRITLRPVRQT 423
S+A ++ S PP L+PV
Sbjct: 183 ----------------------------------ASSSAKLTLSEHEVPPFFDLKPVSVD 208
Query: 424 VKPGDIANIRCSAIGATPISIRW 446
+ G+ +C G PI I W
Sbjct: 209 LALGESGTFKCHVTGTAPIKITW 231
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 22/265 (8%)
Query: 112 ECK-SNDPSATIKWSKDN---QEQLPPNMIAGET---LIINGITKADEGVYICSIQNAQG 164
ECK P + W KD QE M E+ L + ++ D G Y C NA G
Sbjct: 312 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 371
Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK 224
+ +S + +E P R P+ +T + G ++C L+ G P +W + + +
Sbjct: 372 SA---SSSTSLKVKEPPVFRKKPHPVET-LKGADVHLECELQ-GTPPFQVSWHKDKRELR 426
Query: 225 FGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
G ++ E L + N+ + D G+Y C A N G + I L P +
Sbjct: 427 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI-TLKAPPRFVKKLS 485
Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES---- 338
+S GE + L+ G +V+W K R E D + IA+++ S
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVR--ESDNIWISYSENIATLQFSRAEP 543
Query: 339 -DAGQYKCIGKNSAGTEEKVITVAV 362
+AG+Y C KN AGT+E T++V
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATLSV 568
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----------YIAPFDRNLERDE 323
P I P E+V GEP+TL+C+ G P ++W K Y F N+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV---- 60
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
A I V SD G+Y C +NS G + ++ R
Sbjct: 61 ----ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER 98
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 15/177 (8%)
Query: 105 EGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--IAGETLI----INGITKADEGVYIC 157
+G+ V +EC+ P + W KD +E I E + I + AD G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457
Query: 158 SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
N G+ D + + PR + + + +VG+ +Q +E EP W
Sbjct: 458 KASNDVGS---DTCVGSITLKAPPRF-VKKLSDISTVVGEEVQLQATIEGAEPISV-AWF 512
Query: 218 RPDNDGKFGPD---VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ + D + + + L+F+ + GKYTC +N AG + A + VL
Sbjct: 513 KDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 115/289 (39%), Gaps = 23/289 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM---------IAGET 141
+V + P Q G C+ + I W N E+L PN T
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
L I D G+Y C + G + ++++ ++ M + P Q F G+ A I
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP---QEFKEGEDAVI 120
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVE-VYQELGVLRFNNIATGDEGKYTCIAENSAG 260
C + + P PT W D DV + L+ I DEG Y C A
Sbjct: 121 VCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
E+ I V+ T+ + + + G+ +TL C+A G P PT+SW K P +
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 318 NLERDEL----TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
E DE + TI +V ++D +Y CI +N AG ++ I + V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 86 YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
+ SP+ E ++ + P V +C S P+ T++W K+ +E P + I G
Sbjct: 15 WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
++I++ + +D+G Y C ++N G++ Y V++ P ++ A++T +G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
+ C + + +P P W++ N K GPD Y +E+ VL
Sbjct: 131 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
N++ D G+YTC+A NS G +A++ VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
+G P+PT W++ N +F PD + Y ++ +++ D+G YTCI EN G
Sbjct: 41 SGTPNPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 97
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
+ H L V +P + +V G + C+ P P + W+K+
Sbjct: 98 -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
I + D L + A V + DAG+Y C+ NS G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR-AVYTIA--SVRESDAGQYKCIGK 348
+ +C ++G P PT+ W+K F + R A ++I SV SD G Y CI +
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPI 116
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 86 YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
+ SP+ E ++ + P V +C S P T++W K+ +E P + I G
Sbjct: 15 WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
++I++ + +D+G Y C ++N G++ Y V++ P ++ A++T +G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
+ C + + +P P W++ N K GPD Y +E+ VL
Sbjct: 131 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
N++ D G+YTC+A NS G +A++ VL
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
+G P PT W++ N +F PD + Y ++ +++ D+G YTCI EN G
Sbjct: 41 SGTPQPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 97
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
+ H L V +P + +V G + C+ P P + W+K+
Sbjct: 98 -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 152
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
I + D L + A V + DAG+Y C+ NS G
Sbjct: 153 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR-AVYTIA--SVRESDAGQYKCIGK 348
+ +C ++G P PT+ W+K F + R A ++I SV SD G Y CI +
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 94 NEYGSINHTYQLDVVERSPHRPI 116
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 86 YLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
+ SP+ E ++ + P V +C S P T++W K+ +E P + I G
Sbjct: 16 WTSPEKMEKKL----HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 71
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVG 196
++I++ + +D+G Y C ++N G++ Y V++ P ++ A++T +G
Sbjct: 72 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 131
Query: 197 DRADIQCVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFN 241
+ C + + +P P W++ N K GPD Y +E+ VL
Sbjct: 132 SNVEFMCKVYS-DPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
N++ D G+YTC+A NS G +A++ VL
Sbjct: 191 NVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260
+G P PT W++ N +F PD + Y ++ +++ D+G YTCI EN G
Sbjct: 42 SGTPQPTLRWLK--NGKEFKPDHRIGGYKVRYATWSII-MDSVVPSDKGNYTCIVENEYG 98
Query: 261 KEVMNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKY 311
+ H L V +P + +V G + C+ P P + W+K+
Sbjct: 99 -----SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH 153
Query: 312 IAPFDRNLERDELTSRAVYTIASVRES---------------DAGQYKCIGKNSAG 352
I + D L + A V + DAG+Y C+ NS G
Sbjct: 154 IEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR-AVYTIA--SVRESDAGQYKCIGK 348
+ +C ++G P PT+ W+K F + R A ++I SV SD G Y CI +
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 95 NEYGSINHTYQLDVVERSPHRPI 117
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 12 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ R P ++ A+ + +VG +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
C + + + P WI+ N K+GPD Y +E+ VL N+ D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+YTC+A NS G +A++ VL P
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 36 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 95
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI------- 312
++ V+ P + S G + C+ P + W+K++
Sbjct: 96 HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 155
Query: 313 ----APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + + V I +V DAG+Y C+ NS G
Sbjct: 156 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 89 NEYGSINHTYHLDVVERSRHRPI 111
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 10 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 69
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ R P ++ A+ + +VG +
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
C + + + P WI+ N K+GPD Y +E+ VL N+ D
Sbjct: 130 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 188
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+YTC+A NS G +A++ VL P
Sbjct: 189 AGEYTCLAGNSIGISFHSAWLTVLPAPG 216
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 34 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 93
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI------- 312
++ V+ P + S G + C+ P + W+K++
Sbjct: 94 HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 153
Query: 313 ----APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + + V I +V DAG+Y C+ NS G
Sbjct: 154 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 201
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 87 NEYGSINHTYHLDVVERSRHRPI 109
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 103/253 (40%), Gaps = 37/253 (14%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
I W+KDN+E P M E TL + +TK D G Y C N G +D S Q+
Sbjct: 37 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 93
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
+E PR S+ + +C + G P W + + + KF +
Sbjct: 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 150
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
+ + VL N++ D G YTC A N+AG + + V P P +++ G
Sbjct: 151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 209
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS-----------VRESDA 340
+ LECE G P VSW K ++ EL S Y I S V +D
Sbjct: 210 VHLECELQGTPPFQVSWHK---------DKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 341 GQYKCIGKNSAGT 353
G+Y+C N G+
Sbjct: 261 GEYQCKASNDVGS 273
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
P + P S +G+ +C + P TW IRP + K VE
Sbjct: 6 PFFDLKP-VSVDLALGESGTFKCHVTGTAPIKI-TWAKDNREIRPGGNYKMTL-VENTAT 62
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
L VL+ + GD G+YTC A N AGK+ +A + V P V+ E
Sbjct: 63 LTVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 295 ECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
EC+ G P V W K + + S AV + ++ D+G Y C N+AG
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 353 TEEKVITVAVEHRPEY----GPISPRPGADI 379
+ ++ V+ P + P+ GAD+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV 210
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
++ PP L+PV + G+ +C G PI I W
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 39
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 11 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 70
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ P ++ A+ + +VG +
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
C + + + P WI+ N K+GPD Y +E+ VL N+ D
Sbjct: 131 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 189
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+YTC+A NS G +A++ VL P
Sbjct: 190 AGEYTCLAGNSIGISFHSAWLTVLPAPG 217
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 32/173 (18%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 35 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 91
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
+ H L V +P + S G + C+ P + W+K++
Sbjct: 92 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 149
Query: 313 ---------APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + + V I +V DAG+Y C+ NS G
Sbjct: 150 NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 202
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 88 NEYGSINHTYHLDVVERSPHRPI 110
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 12 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ P ++ A+ + +VG +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
C + + + P WI+ N K+GPD Y +E+ VL N+ D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+YTC+A NS G +A++ VL P
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 32/173 (18%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 36 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 92
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
+ H L V +P + S G + C+ P + W+K++
Sbjct: 93 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 150
Query: 315 FDRNLERDELTSRAVYTIASVRESD---------------AGQYKCIGKNSAG 352
D L V A V +D AG+Y C+ NS G
Sbjct: 151 NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPI 111
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 12 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ P ++ A+ + +VG +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFV 131
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGD 247
C + + + P WI+ N K+GPD Y +E+ VL N+ D
Sbjct: 132 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFED 190
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+YTC+A NS G +A++ VL P
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTVLPAPG 218
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGK-- 261
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 36 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 95
Query: 262 -----EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI---- 312
+V+ + H L A P+ +V G+ + C+ P + W+K++
Sbjct: 96 HTYHLDVVERWPHRPILQAGL--PANASTVVGGD-VEFVCKVYSDAQPHIQWIKHVEKNG 152
Query: 313 -------APFDRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + + V I +V DAG+Y C+ NS G
Sbjct: 153 SKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 89 NEYGSINHTYHLDVVERWPHRPI 111
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 122/302 (40%), Gaps = 47/302 (15%)
Query: 108 QVTIECKSN-DPSATIKWSKDNQE-QLPP----NMIAGETLIINGITKADEGVYICSIQN 161
QV + C++ P AT +W + E +L P ++ G +I+N D GVY C N
Sbjct: 23 QVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASN 82
Query: 162 AQGNVFQDYASI------QVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
G V A + + K E ++ H G + C A P +
Sbjct: 83 PVGTVVSREAILRFGFLQEFSKEERDPVKAHE--------GWGVMLPCNPPAHYPGLSYR 134
Query: 216 WIRPD------NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS---AGKEVMNA 266
W+ + DG+ V Q G L D G Y+C+A + + K V +
Sbjct: 135 WLLNEFPNFIPTDGRHF----VSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSK 190
Query: 267 YIHV--------LTLPAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
+ + L P++ P+E ++ G+ +TLEC A G P+P + W K D
Sbjct: 191 FAQLNLAAEDTRLFAPSIKARFPAETYALV-GQQVTLECFAFGNPVPRIKWRK----VDG 245
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
+L T+ I SV D G Y+C +NS G + + V+ +PE+ + A
Sbjct: 246 SLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA 305
Query: 378 DI 379
DI
Sbjct: 306 DI 307
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 114/277 (41%), Gaps = 24/277 (8%)
Query: 103 APEGSQVTIECK--SNDPSATIKWSKDNQEQLPP----NMIAGET--LIINGITKADEGV 154
A EG V + C ++ P + +W + P + ++ T L I +D G
Sbjct: 112 AHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGN 171
Query: 155 YIC----SIQNAQGNVFQDYASIQV---DKREM-PRIRIHPNASQTFIVGDRADIQCVLE 206
Y C + + +VF +A + + D R P I+ A +VG + ++C
Sbjct: 172 YSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLEC-FA 230
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
G P P W + D G P + L+ +++ DEG Y C AENS G++ +
Sbjct: 231 FGNPVPRIKWRKVD--GSLSPQWTTAEP--TLQIPSVSFEDEGTYECEAENSKGRDTVQG 286
Query: 267 YIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS 326
I V P S+ G L C A G+P PTV W++ P + L
Sbjct: 287 RIIVQAQPEWLKVISD-TEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG 345
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
++ S+ D+G Y+C+ +N GT +AV+
Sbjct: 346 DLRFSKLSLE--DSGMYQCVAENKHGTIYASAELAVQ 380
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 98 PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYI 156
P + A G QVT+EC + +P IKW K + P A TL I ++ DEG Y
Sbjct: 213 PAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYE 272
Query: 157 CSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD-RADIQCVLE-----AGEP 210
C +N++G ++Q RI + ++ D ADI L AG+P
Sbjct: 273 CEAENSKGR-----DTVQ------GRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKP 321
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
PT W+R VEV G LRF+ ++ D G Y C+AEN G +A + V
Sbjct: 322 RPTVRWLRNGEPLASQNRVEVLA--GDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 102/253 (40%), Gaps = 37/253 (14%)
Query: 122 IKWSKDNQEQLPP---NMIAGE---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
I W+KDN+E P M E TL + +TK D G Y C N G +D S Q+
Sbjct: 37 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQL 93
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEV 231
+ PR S+ + +C + G P W + + + KF +
Sbjct: 94 GVQAPPRFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKF--RMSF 150
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
+ + VL N++ D G YTC A N+AG + + V P P +++ G
Sbjct: 151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GAD 209
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS-----------VRESDA 340
+ LECE G P VSW K ++ EL S Y I S V +D
Sbjct: 210 VHLECELQGTPPFQVSWHK---------DKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 341 GQYKCIGKNSAGT 353
G+Y+C N G+
Sbjct: 261 GEYQCKASNDVGS 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
P + P S +G+ +C + P TW IRP + K VE
Sbjct: 6 PFFDLKP-VSVDLALGESGTFKCHVTGTAPIKI-TWAKDNREIRPGGNYKMTL-VENTAT 62
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
L VL+ + GD G+YTC A N AGK+ +A + V P V+ E
Sbjct: 63 LTVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRY 119
Query: 295 ECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
EC+ G P V W K + + S AV + ++ D+G Y C N+AG
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 353 TEEKVITVAVEHRPEY----GPISPRPGADI 379
+ ++ V+ P + P+ GAD+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV 210
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
++ PP L+PV + G+ +C G PI I W
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 39
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 28/272 (10%)
Query: 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
++ P Q+ G C+ + +P T+ W KD + + L I + K D+G
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----LRIESVKKEDKG 402
Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
+Y C ++N + + + A +++ R P + +T G ++CV G P+P
Sbjct: 403 MYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPE 460
Query: 214 QTWIRPDNDGKFGPDVEVYQE----------LGVLRFNNIATGDEGKYTCIAENSAGKEV 263
+W + DGK + + YQ + L ++ D G Y CIA++ G
Sbjct: 461 ISW---ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLER 321
+A ++V LP I E ++ GE L + C G P+ ++ W + P +R +
Sbjct: 518 HSAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR---K 572
Query: 322 DELTSRAVYTIASV-RESDAGQYKCIGKNSAG 352
++ I +V R SD Y C+ KN G
Sbjct: 573 QKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 22/224 (9%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
TLII D G Y+C + N+ G + + +I P +QT G A
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDP-PTQTVDFGRPAV 362
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
C G P T +W++ DGK + VLR ++ D+G Y C N
Sbjct: 363 FTCQY-TGNPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRNDRE 413
Query: 261 KEVMNAYIHV--LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV---KYIAPF 315
+A + + P V + ++ PG + L+C A G P P +SW K IA
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 316 DRNLERDELTSR----AVYTIASVRESDAGQYKCIGKNSAGTEE 355
DR +T + I SV +D G YKCI K+ G E
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 34/268 (12%)
Query: 118 PSATIKWSKDNQEQLPPN----MIAGETLIINGITK-ADEGVYICSIQNAQGNVFQDYAS 172
P +I W +DN+ LP N + TLII + + +D+ Y C +N +G + S
Sbjct: 554 PIDSIVWERDNR-ALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG--YSARGS 610
Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY 232
++V +PRI VG + C + G+ W DG+ +
Sbjct: 611 LEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL---DGQ-----AIS 662
Query: 233 QELG-----------VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
++LG VL + G +TC A N AG + ++V P + P+
Sbjct: 663 EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPT 722
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFD-RNLERDE--LTSRAVYTIASVR 336
+ + G +EC+A G P P V+W K + P + ++L++ + + +++
Sbjct: 723 DKAFAQ-GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQ 781
Query: 337 ESDAGQYKCIGKNSAGTE-EKVITVAVE 363
+++ G Y C N G+ VI ++V+
Sbjct: 782 KTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
V Q G L + D GKY C+ NS G E + + V + I P +V G
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 359
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
P C+ TG P+ TVSW+K S +V I SV++ D G Y+C +N
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 411
Query: 351 AGTEE 355
+ E
Sbjct: 412 RESAE 416
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNL-----ERDELTSRAVYTIASVRESDAGQYKCI 346
+ L C A G P+P W K+I R +R + S + +V E D+G+Y C+
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE-DSGKYLCV 324
Query: 347 GKNSAGTE--EKVITV 360
NS G E E V+TV
Sbjct: 325 VNNSVGGESVETVLTV 340
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 294 LECEATGRPMPTVSWVKYIA------PFDRNLERDELTSRAVYTIASVR-ESDAGQYKCI 346
+EC+A+G PMP + W++ P R + D + R E A Y C+
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 347 GKNSAGT 353
+N G+
Sbjct: 119 ARNQFGS 125
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG---- 246
QT + G A C GEP P TW+ K G V Q V+ F++ A
Sbjct: 17 QTGLSGGVASFVC-QATGEPKPRITWM------KKGKKVS-SQRFEVIEFDDGAGSVLRI 68
Query: 247 -------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSVRPGEPL 292
DE Y C A NS G+ +A + VL P + + P V V G
Sbjct: 69 QPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKV-VEKGRTA 127
Query: 293 TLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
T+ C A G P P +SW K P D N +L S A+ I S ESD G+Y+C+ N
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGAL-QIESSEESDQGKYECVATN 186
Query: 350 SAGT 353
SAGT
Sbjct: 187 SAGT 190
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 27/195 (13%)
Query: 102 SAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAG-------ETLIINGITKADEG 153
+ P + V C + +P+ +I W K+ +E + I G +L++ + +D G
Sbjct: 134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 154 VYICSIQNAQGNVFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
Y C ++N G++ Q Y ++ V +R P ++ A+QT ++G + C + + +
Sbjct: 194 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS-DAQ 251
Query: 212 PTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGDEGKYTCIAE 256
P W++ N K GPD Y +EL VL +N+ D G+YTC+A
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 257 NSAGKEVMNAYIHVL 271
NS G +A++ VL
Sbjct: 312 NSIGFSHHSAWLVVL 326
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 48/181 (26%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
AG P+P+ +W++ N +F + +++ + L ++ D G YTC+ EN G
Sbjct: 148 AGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
Query: 262 -------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
+V+ H L A P+ +V G + C+ P + W+K++
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGL--PANQTAVL-GSDVEFHCKVYSDAQPHIQWLKHVEV 262
Query: 313 ---------APF------------DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
P+ D+ LE V ++ +V DAG+Y C+ NS
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELE--------VLSLHNVTFEDAGEYTCLAGNSI 314
Query: 352 G 352
G
Sbjct: 315 G 315
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA---VYTIASVRESDAGQYKCIGKNS 350
C A G P P++SW+K F + R + SV SD G Y C+ +N
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 351 AGTEEKVITVAVEHRPEYGPI 371
G+ + T+ V R + PI
Sbjct: 203 FGSIRQTYTLDVLERSPHRPI 223
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG---- 246
QT + G A C GEP P TW+ K G V Q V+ F++ A
Sbjct: 16 QTGLSGGVASFVC-QATGEPKPRITWM------KKGKKVS-SQRFEVIEFDDGAGSVLRI 67
Query: 247 -------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSVRPGEPL 292
DE Y C A NS G+ +A + VL P++ + P V V
Sbjct: 68 QPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKV-VEKARTA 126
Query: 293 TLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
T+ C A G P P +SW K P D N +L S A+ I S ESD G+Y+C+ N
Sbjct: 127 TMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQ-IESSEESDQGKYECVATN 185
Query: 350 SAGT 353
SAGT
Sbjct: 186 SAGT 189
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
P Q+ G + C+ + +P I W K + E + + AG L I +
Sbjct: 13 PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRV 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
+ DE +Y C+ N+ G + A + V + E P I + P V ++A
Sbjct: 73 QRDEAIYECTATNSLGEI-NTSAKLSVLEEEQLPPGFPSIDMGPQ----LKVVEKARTAT 127
Query: 204 VLEA--GEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
+L A G P P +W + P + ++ + G L+ + D+GKY C+A NS
Sbjct: 128 MLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRS-GALQIESSEESDQGKYECVATNS 186
Query: 259 AGKEV---MNAYIHV 270
AG N Y+ V
Sbjct: 187 AGTRYSAPANLYVRV 201
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYT 252
+V + A C +E+ P P +W R K F + + +L ++ D+G Y
Sbjct: 20 LVEEVATFMCAVES-YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYC 78
Query: 253 CIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY 311
C A N G V + + V P +T P V + G L C G P P+VSW+K
Sbjct: 79 CTANNGVGGAVESCGALQVKMKPKIT-RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137
Query: 312 IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE 363
+ N R + I +V++ DAGQY+C+ KNS GT K++ + VE
Sbjct: 138 DSALREN-SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
G+ L I + +D+G+Y C+ N G + ++QV + P+I P + I G +
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK--PKI-TRPPINVKIIEGLK 117
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
A + C G P P+ +WI+ D+ + + V E G LR +N+ D G+Y C+A+NS
Sbjct: 118 AVLPCT-TMGNPKPSVSWIKGDSALRENSRIAVL-ESGSLRIHNVQKEDAGQYRCVAKNS 175
Query: 259 AG 260
G
Sbjct: 176 LG 177
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTI 332
V TP E V E T C P P +SW + I FD E + + TI
Sbjct: 9 VITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE--NGQLLTI 66
Query: 333 ASVRESDAGQYKCIGKNSAG 352
SV +SD G Y C N G
Sbjct: 67 LSVEDSDDGIYCCTANNGVG 86
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 91 ANEVQVTPRQQSAP------EGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIA---GE 140
A +V++ P+ P EG + + C + +P ++ W K + + IA
Sbjct: 94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG 153
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
+L I+ + K D G Y C +N+ G + ++V+
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKEV 263
+G P P +W R +GK + E Y G L NI D G Y C A N AG++
Sbjct: 29 SGSPEPAISWFR---NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE 85
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-----DRN 318
A++ V P + +E + G+ +TL C+A G P+P ++W + + F D++
Sbjct: 86 KQAFLQVFVQPHIIQLKNE-TTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS 143
Query: 319 LE-RDELTSR---AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
L+ R E+ + + I V+ SD+G+Y C + G +K + + +E
Sbjct: 144 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 272 TLPAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
++PA+++ + + GE +T C A+G P P +SW + + N + S
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
T+ ++ SD G Y C N AG +EK + V +P
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 28/187 (14%)
Query: 102 SAPEGSQVTIECK-SNDPSATIKWSKDNQ--EQLPPNMIAGET--LIINGITKADEGVYI 156
+A G ++T C+ S P I W ++ + E+ ++ G L + I +D G Y+
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 157 CSIQNAQGNVFQDYASIQVDKREMPRIRIHPN----ASQTFIVGDRADIQCVLEAGEPSP 212
C N G + +K+ ++ + P+ ++T + + C E GEP P
Sbjct: 75 CRATNKAG---------EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAE-GEPIP 124
Query: 213 TQTWIRP-------DNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAENSAGKEV 263
TW R + D +EV + G L ++ D G+Y C A + G
Sbjct: 125 EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 184
Query: 264 MNAYIHV 270
+ Y+ +
Sbjct: 185 KSMYLDI 191
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 123/315 (39%), Gaps = 50/315 (15%)
Query: 98 PRQQSAPEGS---QVTIECKSN-DPSATIKWSKDNQE-QLPPN----MIAGETLIINGIT 148
P PEGS +VT+ C++ +P AT +W + E ++ P+ ++AG+ +I N +
Sbjct: 11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVK 70
Query: 149 KADEGVYICSIQNAQGNVFQDYASI------QVDKREMPRIRIHPNASQTFIVGDRADIQ 202
D G Y C NA+G V AS+ + E ++I F
Sbjct: 71 AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT-------- 122
Query: 203 CVLEAGEPSPTQTWIR-------PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
C P+ + W+ P + +F V Q G L D G Y+C A
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRF-----VSQTTGNLYIAKTEASDLGNYSCFA 177
Query: 256 ENSAGKEVMNAYIHVLTLPAVTITPSEYV-SVRP----------GEPLTLECEATGRPMP 304
+ + + L +Y S++ G+ +TLEC A G P+P
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP 237
Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
+ W K D + L+S + I +V D G Y+C +N G + + +
Sbjct: 238 QIKWRK----LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293
Query: 365 RPEYGPISPRPGADI 379
+P++ + ADI
Sbjct: 294 QPDWLDVITDTEADI 308
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 98 PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYI 156
P A G VT+EC + +P IKW K + Q + + L I + DEG Y
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 273
Query: 157 CSIQNAQG-NVFQDYASIQVDKREMPRIRIHPNASQTFIVGD-RADIQCVLE-----AGE 209
C +N +G + +Q RI IH ++ D ADI L +G+
Sbjct: 274 CEAENIKGRDTYQG------------RIIIHAQPDWLDVITDTEADIGSDLRWSCVASGK 321
Query: 210 PSPTQTWIRPDNDGK-FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
P P W+R DG+ + G LRF+ + D G Y C+AEN G +A +
Sbjct: 322 PRPAVRWLR---DGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Query: 269 HV 270
V
Sbjct: 379 TV 380
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 20/222 (9%)
Query: 142 LIINGITKADEGVYIC----SIQNAQGNVFQDYASIQV---DKREM-PRIRIHPNASQTF 193
L I +D G Y C I +VF ++ + + D R+ P I+ A
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYA 219
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
+ G ++C G P P W + D + +L N+ DEG Y C
Sbjct: 220 LTGQMVTLEC-FAFGNPVPQIKWRKLDGSQT----SKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 254 IAENSAGKEVMNAYIHVLTLPAV--TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY 311
AEN G++ I + P IT +E G L C A+G+P P V W++
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVITDTE---ADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 312 IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
P R E++ + V E D+G Y+C+ +N GT
Sbjct: 332 GQPLASQ-NRIEVSGGELRFSKLVLE-DSGMYQCVAENKHGT 371
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
E PR P Q + G A C G+P P TW + N +F +E +
Sbjct: 5 EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
G VLR + T DE Y C+A+NS G+ ++A + VL P + + P V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
R T+ C A+G P P ++W K P D N +L S A+ I S E+D G+Y
Sbjct: 122 RT-RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
+C+ NSAG
Sbjct: 180 ECVATNSAG 188
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
P+ Q G + C+ + DP + W+K + E + + AG L I + T
Sbjct: 13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
DE VY C QN+ G + +A + V + + P I + P + R
Sbjct: 73 PRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLK--VVERTRTATML 129
Query: 204 VLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
+G P P TW + D G ++ G L+ + D+GKY C+A NSA
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS--GALQIESSEETDQGKYECVATNSA 187
Query: 260 G---KEVMNAYIHV 270
G N Y+ V
Sbjct: 188 GVRYSSPANLYVRV 201
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
E PR P Q + G A C G+P P TW + N +F +E +
Sbjct: 5 EPPRFIKEPK-DQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
G VLR + T DE Y C+A+NS G+ ++A + VL P + + P V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
R T+ C A+G P P ++W K P D N +L S A+ I S E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-QIESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
+C+ NSAG
Sbjct: 180 ECVATNSAG 188
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
P+ Q G + C+ + DP + W+K + E + + AG L I + T
Sbjct: 13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
DE VY C QN+ G + +A + V + + P I + P + R
Sbjct: 73 PRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLK--VVERTRTATML 129
Query: 204 VLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
+G P P TW + D G ++ G L+ + D+GKY C+A NSA
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS--GALQIESSEETDQGKYECVATNSA 187
Query: 260 G---KEVMNAYIHV 270
G N Y+ V
Sbjct: 188 GVRYSSPANLYVRV 201
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 99 RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKA 150
R + P + V C + +P T +W K+ +E + I G +LI + +
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 78
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
D+G Y C ++N G++ Y V++ P ++ A+ + +VG + C + + +
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-D 137
Query: 210 PSPTQTWIR--PDNDGKFGPDVEVY-------------QELGVLRFNNIATGDEGKYTCI 254
P WI+ N K+GPD Y +E+ VL N+ D G+YTC+
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 255 AENSAGKEVMNAYIHVL 271
A NS G +A++ VL
Sbjct: 198 AGNSIGISFHSAWLTVL 214
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 22/168 (13%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 36 GGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSIN 95
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL 319
++ V+ P + S G + C+ P + W+K++
Sbjct: 96 HTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 155
Query: 320 ERDELTSRAVYTIASVRESD---------------AGQYKCIGKNSAG 352
D L V A V +D AG+Y C+ NS G
Sbjct: 156 GPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 203
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G P PT W+K F + R + SV SD G Y C+ +
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 88
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 89 NEYGSINHTYHLDVVERSPHRPI 111
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---NDGKFGPDVEVYQEL 235
E P + I Q + G A C G+P P TW + N +F +E +
Sbjct: 4 ESPPVFIKKPVDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRF-ETIEFDESA 61
Query: 236 G-VLRFNNIAT-GDEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSEYVSV 286
G VLR + T DE Y C+A+N G+ ++A + VL P + + P V
Sbjct: 62 GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAVYTIASVRESDAGQY 343
R T+ C A+G P P ++W K P D N +L S + I S E+D G+Y
Sbjct: 122 R-TRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQ-IESSEETDQGKY 179
Query: 344 KCIGKNSAG 352
+C+ NSAG
Sbjct: 180 ECVASNSAG 188
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 24/195 (12%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI-T 148
P Q G + C+ + DP + W+K + E + + AG L I + T
Sbjct: 13 PVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTFIVGDRADIQC 203
DE +Y C QN G V +A + V + + P I + P + R
Sbjct: 73 PRDENIYECVAQNPHGEVTV-HAKLTVLREDQLPPGFPNIDMGPQLK--VVERTRTATML 129
Query: 204 VLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
+G P P TW + P + ++ + G L+ + D+GKY C+A NSAG
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRS-GGLQIESSEETDQGKYECVASNSAG 188
Query: 261 ---KEVMNAYIHVLT 272
N Y+ V T
Sbjct: 189 VRYSSPANLYVRVGT 203
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 124/288 (43%), Gaps = 35/288 (12%)
Query: 109 VTIECKSN-DPSATIKWSKDNQ-------EQLPPNMIAGETLIIN----GITKADEGVYI 156
+ IEC++ +P+ + W+++++ ++ +G TL+I+ G + EG Y
Sbjct: 35 ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG-TLVIDFRSGGRPEEYEGEYQ 93
Query: 157 CSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
C +N G + +QV K + P+ + P Q G +QC G PSP
Sbjct: 94 CFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQE---GAPLTLQCNPPPGLPSPVIF 150
Query: 216 WIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGD-EGKYTCIAENSAGKEVMNA---YIHV 270
W+ + D V Q G L F+N+ D + Y+C A + + V
Sbjct: 151 WMSSSME-PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 271 LTLPAVTI----------TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE 320
LT V T S + +R G L LEC A+G P P ++W K +
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
+ E ++A+ I +V E D+G+Y C+ N G+ I+V V+ P +
Sbjct: 269 KFENFNKAL-RITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYW 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-VLRFNNIATGD 247
+SQ + G ++C+ +G P+P W + G D ++ LR N++ D
Sbjct: 230 SSQMVLRGMDLLLECI-ASGVPTPDIAWYK--KGGDLPSDKAKFENFNKALRITNVSEED 286
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
G+Y C+A N G + V P P + + PGE L C A G P PTV
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQ 345
Query: 308 WVKYIAPF-------------DRNLERD-ELTSRAVYTIASVRE 337
W+ P D + RD +++SRAVY + E
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNE 389
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 18/211 (8%)
Query: 72 NFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIEC-KSNDPSATIKWSKDNQE 130
N ++ L +A +P Q T Q G + +EC S P+ I W K +
Sbjct: 203 NPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD 262
Query: 131 QLPPNMIAGET----LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH 186
LP + E L I +++ D G Y C N G++ +I V + P
Sbjct: 263 -LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH---TISVRVKAAPYWLDE 318
Query: 187 PNASQTFIVGDRADIQCVLEA-GEPSPTQTWI---RPDNDGKFGPDVEVYQELGVLRFNN 242
P + I+ D + V A G P PT W+ P P+ EV + + R
Sbjct: 319 P---KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ 375
Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
I++ Y C N G + NA++ VL +
Sbjct: 376 ISS--RAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD---ELTSRAVY 330
P +T ++ V P + + +ECEA G P P+ W + F N+ +D + R+
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFF--NIAKDPRVSMRRRSGT 74
Query: 331 TIASVR-----ESDAGQYKCIGKNSAGT 353
+ R E G+Y+C +N GT
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGT 102
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 20 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 79
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDK-REMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ R P ++ A+ + +VG +
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEG 249
C + + + P WI+ N K+GPD ++V + G VL N+ D G
Sbjct: 140 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 250 KYTCIAENSAGKEVMNAYIHVL 271
+Y C N G+ +A++ VL
Sbjct: 199 EYICKVSNYIGQANQSAWLTVL 220
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 20/166 (12%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 44 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 264 MNAYIHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA------ 313
++ V+ P + S G + C+ P + W+K++
Sbjct: 104 HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
Query: 314 -----PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + S V + +V E+DAG+Y C N G
Sbjct: 164 GPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 97 NEYGSINHTYHLDVVERSRHRPI 119
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
N E L + +T+AD G YIC + N G Q + K++ P
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------GVLRFNNI 243
+Q VG A C G+P P+ W + N K Y L +LR +
Sbjct: 17 NQGVRVGGVASFYCAAR-GDPPPSIVWRK--NGKKVSGTQSRYTVLEQPGGISILRIEPV 73
Query: 244 ATG-DEGKYTCIAENSAGKEV-MNAYIHVLT-------LPAVTITPSEYVSVRPGEPLTL 294
G D+ Y C+AEN G V +A + + P +T P V + G + +
Sbjct: 74 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLM 132
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
C+A G P P + W+K D + R L I + RE D G+Y+C+ +NS GTE
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQGKYECVAENSMGTE 191
Query: 355 EKVIT 359
T
Sbjct: 192 HSKAT 196
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 31/205 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQ------------EQLPPNMIAG 139
E+ P+ Q G + C + DP +I W K+ + EQ P I+
Sbjct: 10 EIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ--PGGIS- 66
Query: 140 ETLIINGITKA-DEGVYICSIQNAQGNVFQDYASIQV---DKRE--MPRIRIHPNASQTF 193
L I + D+ Y C +N G+ A++ + DK P I P ++
Sbjct: 67 -ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVI 124
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYT 252
VG + C G P+P WI+ N K Y + G L+ N D+GKY
Sbjct: 125 EVGHTVLMTC-KAIGNPTPNIYWIK--NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYE 181
Query: 253 CIAENSAGKE---VMNAYIHVLTLP 274
C+AENS G E N Y+ V +P
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVP 206
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
+ PP I +P Q V+ G +A+ C+A G P SI W+
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWR 43
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------GVLRFNNI 243
+Q VG A C G+P P+ W + N K Y L +LR +
Sbjct: 15 NQGVRVGGVASFYCAAR-GDPPPSIVWRK--NGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 244 ATG-DEGKYTCIAENSAGKEV-MNAYIHVLT-------LPAVTITPSEYVSVRPGEPLTL 294
G D+ Y C+AEN G V +A + + P +T P V + G + +
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLM 130
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
C+A G P P + W+K D + R L I + RE D G+Y+C+ +NS GTE
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-GFLQIENSREEDQGKYECVAENSMGTE 189
Query: 355 EKVIT 359
T
Sbjct: 190 HSKAT 194
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 31/201 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQ------------EQLPPNMIAG 139
E+ P+ Q G + C + DP +I W K+ + EQ P I+
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ--PGGIS- 64
Query: 140 ETLIINGITKA-DEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRIRIHPNASQTF 193
L I + D+ Y C +N G+ A++ + + + P I P ++
Sbjct: 65 -ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVI 122
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYT 252
VG + C G P+P WI+ N K Y + G L+ N D+GKY
Sbjct: 123 EVGHTVLMTC-KAIGNPTPNIYWIK--NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYE 179
Query: 253 CIAENSAGKE---VMNAYIHV 270
C+AENS G E N Y+ V
Sbjct: 180 CVAENSMGTEHSKATNLYVKV 200
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
PP I +P Q V+ G +A+ C+A G P SI W+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWR 41
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
D G+Y C +A+G + +++ ++ R + P Q F G+ A++ C + + P
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP---QEFKQGEDAEVVCRVSSS-P 126
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT----------GDEGKYTCIAENSAG 260
+P +W+ + + D RF +A DEG Y C A
Sbjct: 127 APAVSWLYHNEEVTTISDN---------RFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 261 KEVMNAYIHVLTL--PAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
E+ I V+ PA+++ + + GE +T C A+G P P +SW + +
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 237
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
N + S T+ ++ SD G Y C N AG +EK
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQE--QLPPN---MIAGETLIINGITKADEGV 154
Q +G + C+ S+ P+ + W N+E + N M+A L I I K+DEG+
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 155 YICSIQ-NAQGNVFQDYASIQVDKREMPRIRI-HPNASQTFIVGDRADIQCVLEAGEPSP 212
Y C + A+G + D+ I V P I + + + T G+ C +G P P
Sbjct: 168 YRCEGRVEARGEI--DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-RASGSPEP 224
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
+W R +GK + E Y G L NI D G Y C A N AG++ A++
Sbjct: 225 AISWFR---NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Query: 270 VL 271
V
Sbjct: 282 VF 283
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV-----KYIAPFDRNLERDELT 325
+ L VTI+ S+ V + GE C A G P ++ W K I+ ++++ +
Sbjct: 2 MALLQVTISLSK-VELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEY 368
SR TI + DAG Y+C ++ G T+E + + + + +
Sbjct: 60 SR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTF 101
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITPS-------- 281
V Q G L N+ D+G Y+C ++ S K V + +I ++ +P T P
Sbjct: 61 VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
+ V G+ +TLEC A G P+P + W K + P E TS AV I +++ D G
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEG 178
Query: 342 QYKCIGKNSAGTEEKVITVAVE 363
Y+C +N G ++ + V+
Sbjct: 179 IYECEAENIRGKDKHQARIYVQ 200
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 73 FYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQ 131
F F+ LI I P ++ V + A G VT+EC + +P I+W K E
Sbjct: 95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEP 153
Query: 132 LPPNM---IAGETLIINGITKADEGVYICSIQNAQGN 165
+P +G L I I DEG+Y C +N +G
Sbjct: 154 MPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK 190
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTW---IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK 250
++G ++C G P P W + P E+ VL+ NI DEG
Sbjct: 126 LMGQNVTLEC-FALGNPVPDIRWRKVLEP-----MPSTAEISTSGAVLKIFNIQLEDEGI 179
Query: 251 YTCIAENSAGKEVMNAYIHV 270
Y C AEN GK+ A I+V
Sbjct: 180 YECEAENIRGKDKHQARIYV 199
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 20 NTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 79
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQ 202
+ + +D+G Y C ++N G++ Y V++ P ++ A+ + +VG +
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 139
Query: 203 CVLEAGEPSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEG 249
C + + + P WI+ N K+GPD ++V + G VL N+ D G
Sbjct: 140 CKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 250 KYTCIAENSAGKEVMNAYIHVL 271
+Y C N G+ +A++ VL
Sbjct: 199 EYICKVSNYIGQANQSAWLTVL 220
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 30/171 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 44 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--- 100
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIA- 313
+ H L V +P + S G + C+ P + W+K++
Sbjct: 101 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Query: 314 ----------PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + S V + +V E+DAG+Y C N G
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 97 NEYGSINHTYHLDVVERSPHRPI 119
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
N E L + +T+AD G YIC + N G Q + K++ P
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 113/275 (41%), Gaps = 24/275 (8%)
Query: 96 VTPRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
++P S G + + C + ++P A W + Q + + L I IT + G
Sbjct: 208 ISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ-----STQELFIPNITVNNSGS 262
Query: 155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ 214
Y C N+ + + + E P+ I N S V D + E + T
Sbjct: 263 YTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP--VEDEDAVALTCEPEIQNTTY 320
Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI-HVLTL 273
W + P +++ + L ++ D G Y C +N + + I +VL
Sbjct: 321 LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 274 PAV-TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
P TI+PS Y RPG L+L C A P SW+ D N+++ ++ ++ I
Sbjct: 381 PDDPTISPS-YTYYRPGVNLSLSCHAASNPPAQYSWL-----IDGNIQQH---TQELF-I 430
Query: 333 ASVRESDAGQYKCIGKNSAG----TEEKVITVAVE 363
+++ E ++G Y C NSA T K ITV+ E
Sbjct: 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 91/260 (35%), Gaps = 20/260 (7%)
Query: 106 GSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQN-AQ 163
G +++ C + ++P A W D Q + L I+ IT+ + G+Y C N A
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQ-----HTQELFISNITEKNSGLYTCQANNSAS 450
Query: 164 GNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG 223
G+ +I V E+P+ I N S+ D C EA + T W
Sbjct: 451 GHSRTTVKTITVSA-ELPKPSISSNNSKPVEDKDAVAFTCEPEAQ--NTTYLWWVNGQSL 507
Query: 224 KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSE 282
P +++ L N+ D Y C +NS + + VL P I
Sbjct: 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPP 567
Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQ 342
S G L L C + P P SW P V IA + ++ G
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH---------TQVLFIAKITPNNNGT 618
Query: 343 YKCIGKNSAGTEEKVITVAV 362
Y C N A I ++
Sbjct: 619 YACFVSNLATGRNNSIVKSI 638
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGE--PSPTQTWIRPDNDGKFGPDV----EVYQEL 235
R +++P FI + A +L + P+P+ W + V V Q
Sbjct: 213 RPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVS 272
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
G L + D GKY C+ NS G E + + V + I P +V G P
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFT 331
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
C+ TG P+ TVSW+K S +V I SV++ D G Y+C +N + E
Sbjct: 332 CQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAE 383
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 270 VLTLPAVTITPS-------EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--- 319
V+T P ++ P +++ V +L C A P P+ W K+I R
Sbjct: 204 VITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVV 263
Query: 320 --ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITV 360
+R + S + +V E D+G+Y C+ NS G E E V+TV
Sbjct: 264 LNDRVKQVSGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTV 307
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
TLII D G Y+C + N+ G + + +I P +QT G A
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDP-PTQTVDFGRPAV 329
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257
C G P T +W++ DGK + VLR ++ D+G Y C N
Sbjct: 330 FTCQY-TGNPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRN 377
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 294 LECEATGRPMPTVSWVKYIA------PFDRNLERDELTSRAVYTIASVRESDAGQ-YKCI 346
+EC+A+G PMP + W++ P R + D + R+ Q Y C+
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 347 GKNSAGT 353
+N G+
Sbjct: 84 ARNQFGS 90
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
V Q G L + D GKY C+ NS G E + + V + I P +V G
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 323
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
P C+ TG P+ TVSW+K S +V I SV++ D G Y+C +N
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 375
Query: 351 AGTEE 355
+ E
Sbjct: 376 RESAE 380
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-----ERDELTSRA 328
PA+ P E + ++L C A G P P+ W K+I R +R + S
Sbjct: 215 PALVQKPLELMV---AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTE--EKVITV 360
+ +V E D+G+Y C+ NS G E E V+TV
Sbjct: 272 LIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTV 304
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
TLII D G Y+C + N+ G + + +I P +QT G A
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDP-PTQTVDFGRPAV 326
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257
C G P T +W++ DGK + VLR ++ D+G Y C N
Sbjct: 327 FTCQY-TGNPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRN 374
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 294 LECEATGRPMPTVSWVKYIA------PFDRNLERDELTSRAVYTIASVRESDAGQ-YKCI 346
+EC+A+G PMP + W++ P R + D + R+ Q Y C+
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 347 GKNSAGT 353
+N G+
Sbjct: 84 ARNQFGS 90
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
V Q G L + D GKY C+ NS G E + + V + I P +V G
Sbjct: 271 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGR 329
Query: 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
P C+ TG P+ TVSW+K S +V I SV++ D G Y+C +N
Sbjct: 330 PAVFTCQYTGNPIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRND 381
Query: 351 AGTEE 355
+ E
Sbjct: 382 RESAE 386
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-----ERDELTSRA 328
PA+ P E + ++L C A G P P+ W K+I R +R + S
Sbjct: 221 PALVQKPLELMV---AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 277
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTE--EKVITV 360
+ +V E D+G+Y C+ NS G E E V+TV
Sbjct: 278 LIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTV 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
TLII D G Y+C + N+ G + + +I P +QT G A
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDP-PTQTVDFGRPAV 332
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257
C G P T +W++ DGK + VLR ++ D+G Y C N
Sbjct: 333 FTCQY-TGNPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRN 380
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 294 LECEATGRPMPTVSWVKYIA------PFDRNLERDELTSRAVYTIASVRESDAGQ-YKCI 346
+EC+A+G PMP + W++ P R + D + R+ Q Y C+
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 89
Query: 347 GKNSAGT 353
+N G+
Sbjct: 90 ARNQFGS 96
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 33/196 (16%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
PR P QT + G A C G+P P W K G V Q V+ F
Sbjct: 7 PRFTRTP-VDQTGVSGGVASFIC-QATGDPRPKIVW------NKKGKKVS-NQRFEVIEF 57
Query: 241 NNIATG-----------DEGKYTCIAENSAGKEVMNAYIHVLT-------LPAVTITPSE 282
++ + DE Y C+A N+ G+ ++ + VL P + + P
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD---RNLERDELTSRAV--YTIASVRE 337
V R T+ C A+G P P ++W K P D N +L S ++ I E
Sbjct: 118 KVVERT-RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 338 SDAGQYKCIGKNSAGT 353
SD G+Y+C+ NSAGT
Sbjct: 177 SDQGKYECVATNSAGT 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 16/180 (8%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGI- 147
TP Q+ G + C+ + DP I W+K + E + + +G L I +
Sbjct: 12 TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
T DE +Y C N G + + + ++PR + V +R +L A
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA 131
Query: 208 --GEPSPTQTWIRP----DNDGKFGPDVEVYQE-LGVLRFNNIATGDEGKYTCIAENSAG 260
G P P TW + D G ++ E +G L+ D+GKY C+A NSAG
Sbjct: 132 ASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
PPR T PV QT G +A+ C A G I W
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVW 40
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 99 RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKA 150
R + P + V C + +P T +W K+ +E + I G +LI + +
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 85
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
D+G Y C ++N G++ Y V++ P ++ A+ + +VG + C + + +
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-D 144
Query: 210 PSPTQTWIR--PDNDGKFGPD----VEVYQELG-------VLRFNNIATGDEGKYTCIAE 256
P WI+ N K+GPD ++V + G VL N+ D G+Y C
Sbjct: 145 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 204
Query: 257 NSAGKEVMNAYIHVL 271
N G+ +A++ VL
Sbjct: 205 NYIGQANQSAWLTVL 219
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 30/171 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W++ + K + Y+ + L ++ D+G YTC+ EN G
Sbjct: 43 GGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYG--- 99
Query: 264 MNAYIHVLTLPAVTITPSEYV---------SVRPGEPLTLECEATGRPMPTVSWVKYIA- 313
+ H L V +P + S G + C+ P + W+K++
Sbjct: 100 --SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 157
Query: 314 ----------PFDRNLERDELTSR--AVYTIASVRESDAGQYKCIGKNSAG 352
P+ + L+ + S V + +V E+DAG+Y C N G
Sbjct: 158 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 208
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G P PT W+K F + R + SV SD G Y C+ +
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVE 95
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + V R + PI
Sbjct: 96 NEYGSINHTYHLDVVERSPHRPI 118
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
N E L + +T+AD G YIC + N G Q + K++ P
Sbjct: 179 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 225
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQEL 235
PRI HP + A + C +E G+P PT W + DG+ E V +
Sbjct: 10 PRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFK---DGEPVSTNEKKSHRVQFKD 64
Query: 236 GVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGE 290
G L F G D G+Y C+A+N G+ V +A + + L + V GE
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE 124
Query: 291 PLTLEC-EATGRPMPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAG 341
LEC G P PT+ W+K P D +L+ R + I++V D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLD-DLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 342 QYKCIGKNSAGTEE 355
YKCI +N GT E
Sbjct: 184 NYKCIAQNLVGTRE 197
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 110 TIECK-SNDPSATIKWSKD------NQEQLPPNMIAGETLI----INGITKADEGVYICS 158
T+ CK P TI+W KD N+++ L + G + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR 218
+N G +AS+Q+ R+ P ++ G+ A ++C G P PT WI+
Sbjct: 88 AKNRVGQAVSRHASLQIAVLR-DDFRVEPKDTRV-AKGETALLECGPPKGIPEPTLIWIK 145
Query: 219 ---PDNDGK---FGPDVEV-YQELGVLRFNNIATGDEGKYTCIAENSAG 260
P +D K FG V + G L +N+ DEG Y CIA+N G
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDN--QEQLPP---------NMIA 138
++ +V P+ +G +EC P T+ W KD + L ++
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
G L+I+ + DEG Y C QN G YA + V
Sbjct: 169 GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQEL 235
PRI HP + A + C +E G+P PT W + DG+ E V +
Sbjct: 10 PRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFK---DGEPVSTNEKKSHRVQFKD 64
Query: 236 GVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGE 290
G L F G D G+Y C+A+N G+ V +A + + L + V GE
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE 124
Query: 291 PLTLEC-EATGRPMPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAG 341
LEC G P PT+ W+K P D +L+ R + I++V D G
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLD-DLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 342 QYKCIGKNSAGTEE 355
YKCI +N GT E
Sbjct: 184 NYKCIAQNLVGTRE 197
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 110 TIECK-SNDPSATIKWSKD------NQEQLPPNMIAGETLI----INGITKADEGVYICS 158
T+ CK P TI+W KD N+++ L + G + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR 218
+N G +AS+Q+ R+ P ++ G+ A ++C G P PT WI+
Sbjct: 88 AKNRVGQAVSRHASLQIAVLR-DDFRVEPKDTRV-AKGETALLECGPPKGIPEPTLIWIK 145
Query: 219 ---PDNDGK---FGPDVEV-YQELGVLRFNNIATGDEGKYTCIAENSAG 260
P +D K FG V + G L +N+ DEG Y CIA+N G
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDN--QEQLPP---------NMIA 138
++ +V P+ +G +EC P T+ W KD + L ++
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
G L+I+ + DEG Y C QN G YA + V
Sbjct: 169 GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
L F DEG YTC +N GK + + + V++ P P + + V+ G+ +T+ C
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPC 331
Query: 297 EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
+ TG P P V W P R +T + I V+ D G Y C N G +
Sbjct: 332 KVTGLPAPNVVWSHNAKPLSGG--RATVTDSGL-VIKGVKNGDKGYYGCRATNEHGDK 386
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKF----GPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
++C++E + +W + DGK + + ++ G L F DEG Y C AE
Sbjct: 26 LECIIEGNDQGVKYSWKK---DGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 82
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP--GEPLTLECEA-TGRPMPTVSWVKYIA 313
AG V ++ + + +P++ P G P L+C P P ++W K ++
Sbjct: 83 TPAG--VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS 140
Query: 314 PFDRNLERDELTSRAV--------YTIASVRE-SDAGQYKCIGKNSAGTEEKVI 358
D N + + R +TI + + SD +Y C KN+A EE V+
Sbjct: 141 GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
N +G+ L+ DEGVY C + N G + S+++ P+ P
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQKPEKVIVVK 322
Query: 195 VGDRADIQCVLEAGEPSPTQTW---IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G I C + G P+P W +P + G+ + G++ + GD+G Y
Sbjct: 323 QGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGR-----ATVTDSGLV-IKGVKNGDKGYY 375
Query: 252 TCIAENSAGKEVMNAYIHV 270
C A N G + + V
Sbjct: 376 GCRATNEHGDKYFETLVQV 394
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 101/299 (33%), Gaps = 42/299 (14%)
Query: 105 EGSQVTIEC--KSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYIC 157
E + +EC + ND W KD QE +L+ +DEG Y C
Sbjct: 20 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79
Query: 158 SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
+ G S + + H +T I G + CVL P P TW
Sbjct: 80 FAETPAGVASSRVISFRKTYLIASPAKTH---EKTPIEGRPFQLDCVLPNAYPKPLITWK 136
Query: 218 RPDNDGKFGPDVEVYQEL------GVLRFNNIATGDEG---KYTCIAENSAGKE--VMNA 266
+ + DV + G L F + D KY C A+N+A E V+
Sbjct: 137 KRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196
Query: 267 YIHVLTLPAVTITPS--------EYVS----VRPGEPLTLECEATGRPMPTVSWVKYIAP 314
Y + VT S +YVS + G+ + C PM ++ K
Sbjct: 197 Y----EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252
Query: 315 FDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VITVAVEHRPEY 368
+ N E R TS + D G Y C N G +K + + V P+Y
Sbjct: 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 208 GEPSPTQTWIRP-------DNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
GEP P TW R + D +EV + G L ++ D G+Y C A +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--KYIAPFD 316
G + Y+ + P + Y S G P+ + C+ P ++ W K + P
Sbjct: 86 IGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRRDKLVLPAK 144
Query: 317 R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT--EEKVITVA 361
NL+ + + IA ++D G+Y C N GT +E ++ +A
Sbjct: 145 NTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPF-----DRNLE-RDELTSR---AVYTIASVRESDAGQ 342
+TL C+A G P+P ++W + + F D++L+ R E+ + + I V+ SD+G+
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEY 368
Y C + G +K + + +E+ P++
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKF 103
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 105 EGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGET--------LIINGITKADEGV 154
EG+ + I C KSN P A+I W +D N +T L I + D G
Sbjct: 114 EGNPINISCDVKSN-PPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 155 YICSIQNAQGNVFQDY 170
Y C+ N G FQ+Y
Sbjct: 173 YNCTATNHIGTRFQEY 188
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 208 GEPSPTQTWIRP-------DNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
GEP P TW R + D +EV + G L ++ D G+Y C A +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--KYIAPFD 316
G + Y+ + P + Y S G P+ + C+ P ++ W K + P
Sbjct: 86 IGGHQKSMYLDIEYAPKFISNQTIYYSWE-GNPINISCDVKSNPPASIHWRRDKLVLPAK 144
Query: 317 R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
NL+ + + IA ++D G+Y C N GT + +A+ P
Sbjct: 145 NTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPF-----DRNLE-RDELTSR---AVYTIASVRESDAGQ 342
+TL C+A G P+P ++W + + F D++L+ R E+ + + I V+ SD+G+
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEY 368
Y C + G +K + + +E+ P++
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKF 103
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 105 EGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGET--------LIINGITKADEGV 154
EG+ + I C KSN P A+I W +D N +T L I + D G
Sbjct: 114 EGNPINISCDVKSN-PPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 155 YICSIQNAQGNVFQDY 170
Y C+ N G FQ+Y
Sbjct: 173 YNCTATNHIGTRFQEY 188
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 102 SAPEGSQVTIEC-KSNDPSATIKWSKDNQEQLPPNMIAG-------ETLIINGITKADEG 153
+ P + V C + +P+ +I W K+ +E + I G +L++ + +D G
Sbjct: 26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 154 VYICSIQNAQGNVFQDYASIQVDKR--EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
Y C ++N G++ Q Y ++ V +R P ++ A+QT ++G + C + + +
Sbjct: 86 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS-DAQ 143
Query: 212 PTQTWIR--PDNDGKFGPDVEVY-----------QELGV-LRFNNIATGDEGKYTCIAEN 257
P W++ N K GPD Y E V LR N++ D G+Y C A N
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 258 SAG 260
G
Sbjct: 204 FIG 206
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
AG P+P+ +W++ N +F + +++ + L ++ D G YTC+ EN G
Sbjct: 40 AGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
Query: 262 -------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI-- 312
+V+ H L A P+ +V G + C+ P + W+K++
Sbjct: 98 IRQTYTLDVLERSPHRPILQAGL--PANQTAVL-GSDVEFHCKVYSDAQPHIQWLKHVEV 154
Query: 313 ---------APFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
P+ L+ + + + +A+V E D G+Y C N G EK +
Sbjct: 155 NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Query: 361 AVEHRP 366
+V H P
Sbjct: 215 SV-HGP 219
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA---VYTIASVRESDAGQYKCIGK 348
+ C A G P P++SW+K F + R + SV SD G Y C+ +
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92
Query: 349 NSAGTEEKVITVAVEHRPEYGPI 371
N G+ + T+ V R + PI
Sbjct: 93 NKFGSIRQTYTLDVLERSPHRPI 115
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT----- 245
Q F G+ A++ C + + P+P +W+ + E + RF +A
Sbjct: 12 QEFKQGEDAEVVCRVSSS-PAPAVSWLYHN---------EEVTTISDNRFAMLANNNLQI 61
Query: 246 -----GDEGKYTCIAENSAGKEV--MNAYIHVLTLPAVTITPSEY-VSVRPGEPLTLECE 297
DEG Y C A E+ + + V PA+++ + + GE +T C
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 298 ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
A+G P P +SW + + N + S T+ ++ SD G Y C N AG +EK
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQE--QLPPN---MIAGETLIINGITKADEGV 154
Q +G + C+ S+ P+ + W N+E + N M+A L I I K+DEG+
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 71
Query: 155 YICSIQ-NAQGNVFQDYASIQVDKREMPRIRI-HPNASQTFIVGDRADIQCVLEAGEPSP 212
Y C + A+G + D+ I V P I + + + T G+ C +G P P
Sbjct: 72 YRCEGRVEARGEI--DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-RASGSPEP 128
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
+W R +GK + E Y G L NI D G Y C A N AG++ A++
Sbjct: 129 AISWFR---NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Query: 270 VL 271
V
Sbjct: 186 VF 187
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RA 328
TL A +T ++V GE C+ G P+PTV+W++ + R ++T+ ++
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKS 70
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ I+SV+ SD G Y + +NS G +E T+ ++
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DGKFGPDVEVYQELGVLR 239
RI P S T G+ A C + GEP PT TW+R V +
Sbjct: 16 RILTKPR-SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 240 FNNIATGDEGKYTCIAENSAGKE 262
+++ DEG Y+ + ENS GK+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQ 96
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRESDA 340
V+++ G+ L L C G P P VSW+ K +A D + E A +TI V +D+
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
G+Y + KN G+E TV+V
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSV 208
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 105 EGSQVTIECKS-NDPSATIKWSKDNQ-----EQLPPNMIAGET--LIINGITKADEGVYI 156
EG + + C DP + W K+ + + AG T ING++ AD G Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 157 CSIQNAQGNVFQDY 170
++N G+ D+
Sbjct: 191 LVVKNKYGSETSDF 204
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTCIAENSAGKEVM 264
G+P P +W++ + + E G N ++T D GKY + +N G E
Sbjct: 143 GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 202
Query: 265 NAYIHVL 271
+ + V
Sbjct: 203 DFTVSVF 209
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRESDA 340
V+++ G+ L L C G P P VSW+ K +A D + E A +TI V +D+
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
G+Y + KN G+E TV+V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSV 313
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 98 PRQQSAPEGSQVTIECKS-NDPSATIKWSKDNQEQLPPN------MIAGET--LIINGIT 148
P + EG + + C DP + W K N++ L + AG T ING++
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFEAGRTAYFTINGVS 287
Query: 149 KADEGVYICSIQNAQGNVFQDY 170
AD G Y ++N G+ D+
Sbjct: 288 TADSGKYGLVVKNKYGSETSDF 309
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTCIAENSAGKEVM 264
G+P P +W++ + + E G N ++T D GKY + +N G E
Sbjct: 248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 307
Query: 265 NAYIHVL 271
+ + V
Sbjct: 308 DFTVSVF 314
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
L+C+ATG P+P +SW+K F R + + I ++R SD G Y C+ +S+G
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG 86
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQEL 235
P I + A+QT V A ++C G+P P +W++ P D + QE
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCK-ATGDPLPVISWLKEGFTFPGRDPR-----ATIQEQ 61
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
G L+ N+ D G YTC+A +S+G+ +A + V
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 162 AQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA-GEPSPTQTWIRP 219
QG F+D+ + + + R RI +Q V + +Q V A G+P P W+ P
Sbjct: 363 VQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP 422
Query: 220 DN---DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
K + V+ + G L D G Y CIA N+ G + M A++HV
Sbjct: 423 RKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNLERDELTSRAVYTIASVRE 337
++ V V G + C A G P P + W+ K++ N R + + +
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN-GRLTVFPDGTLEVRYAQV 450
Query: 338 SDAGQYKCIGKNSAGTE 354
D G Y CI N+ G +
Sbjct: 451 QDNGTYLCIAANAGGND 467
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
+ D K E+ + L L + + D+G YTC A + + + ++ V P V
Sbjct: 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 333
Query: 280 P--SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE 337
V GE + + + G P P + W K P + N + + V TI V E
Sbjct: 334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSE 390
Query: 338 SDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYG 369
D G Y I N E++ V+++ V P+ G
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 25/126 (19%)
Query: 234 ELGVLRFNNIATGDEGKYTCIAENSAGKE--VMNAYIHVLTLPAVTITPS-EYVSVRPGE 290
++ ++ N + D+G Y C+A++ K+ + + VL A TIT + E + GE
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE 682
Query: 291 PLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDELTSRAVYTIASVRESD 339
+ + C A+G P P + W K + +RNL TI VR+ D
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL-----------TIRRVRKED 731
Query: 340 AGQYKC 345
G Y C
Sbjct: 732 EGLYTC 737
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTF--IVGDR 198
TL I+G+T++D+G+Y C+ A + S V E P + VG+R
Sbjct: 291 TLTIDGVTRSDQGLYTCA---ASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER 347
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
I G P P W + +G + VL ++ D G YT I N
Sbjct: 348 VRIPAKY-LGYPPPEIKWYK---NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNP 403
Query: 259 AGKEVMNAYIHVLTL 273
KE + HV++L
Sbjct: 404 ISKEKQS---HVVSL 415
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVY 155
Q+ G + + C S +P I W KDN+ + + I L I + K DEG+Y
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 156 ICSIQNAQG 164
C + G
Sbjct: 736 TCQACSVLG 744
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 151 DEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
D+G Y+C Q+ + + V +R P I + +QT +G+ ++ C +G
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLE-NQTTSIGESIEVSCT-ASGN 693
Query: 210 PSPTQTWIRPDNDGKFGPDVEVYQELGV-LRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
P P W + DN+ V ++ L + DEG YTC A + G + A+
Sbjct: 694 PPPQIMWFK-DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
+ D K E+ + L L + + D+G YTC A + + + ++ V P V
Sbjct: 144 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 203
Query: 280 PS--EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE 337
V GE + + + G P P + W K P + N + + V TI V E
Sbjct: 204 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSE 260
Query: 338 SDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYG 369
D G Y I N E++ V+++ V P+ G
Sbjct: 261 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 294
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 23/175 (13%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTF--IVGDR 198
TL I+G+T++D+G+Y C+ A + S V E P + VG+R
Sbjct: 161 TLTIDGVTRSDQGLYTCA---ASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER 217
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
I G P P W + +G + VL ++ D G YT I N
Sbjct: 218 VRIPAKY-LGYPPPEIKWYK---NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNP 273
Query: 259 AGKEVMNAYIHVLTL-----PAV----TITPSEYVSVRPGEPLTLECEATGRPMP 304
KE + HV++L P + I+P + S + G TL C P P
Sbjct: 274 ISKEKQS---HVVSLVVYVPPQIGEKSLISPVD--SYQYGTTQTLTCTVYAIPPP 323
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RAVYTIAS 334
+T ++V GE C+ G P+PTV+W++ + R ++T+ ++ + I+S
Sbjct: 12 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTKYKSTFEISS 70
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVE 363
V+ SD G Y + +NS G +E T+ ++
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DGKFGPDVEVYQELGVLR 239
RI P S T G+ A C + GEP PT TW+R V +
Sbjct: 10 RILTKPR-SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 240 FNNIATGDEGKYTCIAENSAGKE 262
+++ DEG Y+ + ENS GK+
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQ 90
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIASVRESDAG 341
V+ + GE L C+ GRP+P + W ++ R + T+ + + D G
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
Y CI N G E + ++ P++ P P
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFHPGYP 108
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATG----- 246
+G+ A + C + G P P W R FG ++ Y+ R + +
Sbjct: 21 LGEAAQLSCQI-VGRPLPDIKWYR------FGKELIQSRKYKMSSDGRTHTLTVMTEEQE 73
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVT----ITPSEYVSVRPGEPLTLECEATGRP 302
DEG YTCIA N G+ ++ + + P + Y +V G L L GRP
Sbjct: 74 DEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV--GSTLRLHVMYIGRP 131
Query: 303 MPTVSWVKYIAPFDRNLERDELTSRAVYTIASV----RESDAGQYKCIGKNSAGTEEKVI 358
+P ++W + +N E + + YT + R++ AG+YK N GT + ++
Sbjct: 132 VPAMTWF-HGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAIL 190
Query: 359 TVAVEHR 365
V ++ +
Sbjct: 191 DVEIQDK 197
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLR 239
P IR P +QT V + CV G P PT W R D D + Q E GVL+
Sbjct: 9 PVIRQGP-VNQTVAVDGTFVLSCV-ATGSPVPTILW-RKDGVLVSTQDSRIKQLENGVLQ 65
Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
GD G+YTCIA +G+ +AYI V
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
L C ATG P+PT+ W K R + V I + D G+Y CI +
Sbjct: 26 FVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS 85
Query: 352 G 352
G
Sbjct: 86 G 86
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIIN 145
L P+ +++ V P ++ G V + C++ P +W K N+E PN E LI N
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE--IPNGNTSE-LIFN 70
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP---------------RIRIHPNAS 190
+ D G Y+C + N F ++ Q+D ++P +I + P S
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWS--QLDVCDIPESFQRSVDGVSESKLQICVEP-TS 127
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIR 218
Q + G +QCV G P P W +
Sbjct: 128 QKLMPGSTLVLQCV-AVGSPIPHYQWFK 154
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 33/190 (17%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
+I ++P S+ + G + C G P W + + + G E L FN
Sbjct: 20 KITVNP-ESKAVLAGQFVKL-CCRATGHPFVQYQWFKMNKEIPNGNTSE-------LIFN 70
Query: 242 NIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLP---------------AVTITPSEYVS 285
+ D G Y C N+ E + + V +P + + P+
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ-K 129
Query: 286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
+ PG L L+C A G P+P W K P ++ +Y + V G Y C
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWC 182
Query: 346 IGKNSAGTEE 355
N +++
Sbjct: 183 HVYNDRDSQD 192
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 105 EGSQVTIECKSNDPSATI--KWSKDN-----QEQLPP------NMIAGETLIINGITKAD 151
EG + T+ C D S+++ W ++N QE+ N TL I+ D
Sbjct: 200 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 259
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE-AGEP 210
GV++C N G+ VDK I I P + T V D ++ ++E P
Sbjct: 260 SGVFMCYANNTFGSANVTTTLEVVDKG---FINIFPMINTTVFVNDGENVDLIVEYEAFP 316
Query: 211 SPT-QTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG 260
P Q WI + F E Y + + L + + G YT + NS
Sbjct: 317 KPEHQQWIYMNR--TFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 374
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
+ ++V T P + Y + G L+C A G P PT+ W Y P
Sbjct: 375 NAAIAFNVYVNTKPEILT----YDRLVNG---MLQCVAAGFPEPTIDW--YFCP 419
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 107/296 (36%), Gaps = 30/296 (10%)
Query: 99 RQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ-LP------PNMIAGETLIINGITKAD 151
R E S + C DP T K Q + LP P+ AG ++I + +A
Sbjct: 97 RSLYGKEDSDTLVRCPLTDPEVTSYSLKGCQGKPLPKDLRFIPDPKAG--IMIKSVKRAY 154
Query: 152 EGVYI-CSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
+ + CS+ +V + ++V + +P + + AS G+ + C ++
Sbjct: 155 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS-KASYLLREGEEFTVTCTIKDV 213
Query: 209 EPSPTQTWIRPDNDGKFGPDVEV-------YQELGVLRFNNIATGDEGKYTCIAENSAGK 261
S TW R ++ K Y+ L ++ D G + C A N+ G
Sbjct: 214 SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS 273
Query: 262 EVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRN 318
+ + V+ + I P + V V GE + L E P P W+ F
Sbjct: 274 ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK 333
Query: 319 LE---RDELTSRAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
E + E S Y + ++ ++ G Y + NS V V +PE
Sbjct: 334 WEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 389
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 38/234 (16%)
Query: 105 EGSQVTIECKSNDPSATI--KWSKDN-----QEQLPP------NMIAGETLIINGITKAD 151
EG + T+ C D S+++ W ++N QE+ N TL I+ D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE-AGEP 210
GV++C N G+ VDK I I P + T V D ++ ++E P
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDK---GFINIFPMINTTVFVNDGENVDLIVEYEAFP 341
Query: 211 SPT-QTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG 260
P Q WI + F E Y + + L + + G YT + NS
Sbjct: 342 KPEHQQWIYMNR--TFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
+ ++V T P + Y + G L+C A G P PT+ W Y P
Sbjct: 400 NAAIAFNVYVNTKPEILT----YDRLVNG---MLQCVAAGFPEPTIDW--YFCP 444
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 107/296 (36%), Gaps = 30/296 (10%)
Query: 99 RQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQ-LP------PNMIAGETLIINGITKAD 151
R E + + C DP T K Q + LP P+ AG ++I + +A
Sbjct: 122 RSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG--IMIKSVKRAY 179
Query: 152 EGVYI-CSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
+ + CS+ +V + ++V + +P + + AS G+ + C ++
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS-KASYLLREGEEFTVTCTIKDV 238
Query: 209 EPSPTQTWIRPDNDGKFGPDVEV-------YQELGVLRFNNIATGDEGKYTCIAENSAGK 261
S TW R ++ K Y+ L ++ D G + C A N+ G
Sbjct: 239 SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS 298
Query: 262 EVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRN 318
+ + V+ + I P + V V GE + L E P P W+ F
Sbjct: 299 ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK 358
Query: 319 LE---RDELTSRAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
E + E S Y + ++ ++ G Y + NS V V +PE
Sbjct: 359 WEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 290 EPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT---SRAVYTIASVRESDAGQYKCI 346
+ +TL C+A G P PT++W K P ++ ++ + + I V +SD +Y CI
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 347 GKNSAGTEEKVITVAV 362
+N AG ++ I + V
Sbjct: 89 AENKAGEQDATIHLKV 104
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRP-------DNDGKFGPDVEVYQELGVLRF 240
N SQ+ + AD G P PT TW + DN+ K+ + + + L
Sbjct: 26 NLSQSVTLACDAD-------GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE----LII 74
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
+ DE +Y CIAEN AG++ +A IH+
Sbjct: 75 KKVDKSDEAEYICIAENKAGEQ--DATIHL 102
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 109 VTIECKSND-PSATIKWSKD--------NQEQLPPNMIAGETLIINGITKADEGVYICSI 159
VT+ C ++ P T+ W+KD N+E+ N G LII + K+DE YIC
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNY-DGSELIIKKVDKSDEAEYICIA 89
Query: 160 QNAQG 164
+N G
Sbjct: 90 ENKAG 94
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G + C +E E P W++ N + V +G L ++ D G+Y
Sbjct: 17 GQPVKLNCSVEGXE-EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 252 TCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWV 309
C E+ E+ ++ V +P T+ P + ++V P P L CEA G P P T+ W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWW 134
Query: 310 K 310
+
Sbjct: 135 R 135
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRES 338
++V G+P+ L C G P + WVK A +NL++ E ++ SV S
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGA-VVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 339 DAGQYKCIGKNSAGTE-EKVITVAVEHRPEY 368
DAG+Y C ++ TE + + + VE P +
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGVPFF 101
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRAD 200
+ +T+ D G Y C + GN Y ++V + P + N + +G+RA
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGN---SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV 126
Query: 201 IQCVLEAGEPSPTQTWIR--------PDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKY 251
+ C + G P TW + P + F V G L F+ ++ D G+Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 252 TCIAENSAG 260
+C A N G
Sbjct: 187 SCEARNGYG 195
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-----PAVTITPSEYVSVRPGEPL 292
+ F ++ D G YTC+ G + ++ L P V I S + G
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI----GNRA 125
Query: 293 TLEC-EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI---------ASVRESDAGQ 342
L C E G P +W K N + S + Y + + SD G+
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185
Query: 343 YKCIGKNSAGT 353
Y C +N GT
Sbjct: 186 YSCEARNGYGT 196
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAPFDRNLERDELTSRA-----V 329
VT+ SVRPG +T C A + P T+ W + L +L SRA +
Sbjct: 12 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR--------LHNGKLPSRAMDFNGI 63
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
TI +V+ SDAG Y C G N ++ T+ V+
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 99 RQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN-MIAGETLIINGITKADEGVY 155
R QS G+ VT C KS P+ T+ W++ + +LP M L I + +D G Y
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTY 77
Query: 156 ICSIQN 161
+C+ N
Sbjct: 78 VCTGSN 83
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY 232
I V E + P A TFI C ++ P+ T W R N GK +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFI--------CTAKSKSPAYTLVWTRLHN-GKLPSRAMDF 60
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
G+L N+ D G Y C N + A +HV
Sbjct: 61 N--GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G A+++C G + W+ P+ G + + V + G L F N+ D G+Y
Sbjct: 327 GMAAELKC--RTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHD-GTLNFTNVTVQDTGQY 383
Query: 252 TCIAENSAGKEVMNAYIHV 270
TC+ NSAG +A ++V
Sbjct: 384 TCMVTNSAGNTTASATLNV 402
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 10/120 (8%)
Query: 252 TCIAENSAGKEVMNAYI------HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT 305
TC A A + YI H V + P ++V G L+C TG M +
Sbjct: 284 TCCARCHAPAGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR-TGTSMTS 342
Query: 306 VSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
V+W+ + R + +V D GQY C+ NSAG T+ V
Sbjct: 343 VNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDN-------QEQLPPNMIAGETLIINGITKA 150
P + EG ++C++ ++ W N ++ +++ TL +T
Sbjct: 319 PTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQ 378
Query: 151 DEGVYICSIQNAQGN 165
D G Y C + N+ GN
Sbjct: 379 DTGQYTCMVTNSAGN 393
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
P + PS+ + V GEP TL C+A GRP PT+ W K D R L S +
Sbjct: 10 PRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 329 VYTIASV--RES--DAGQYKCIGKNSAG 352
++ + V R+S D G Y C+ +N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 181 PRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWI----RPDNDGKFGPDVEVYQE 234
PRI HP+ IV G+ A + C E G P+PT W R + D +
Sbjct: 10 PRIVEHPS---DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 235 LGVLRFNNIATG-----DEGKYTCIAENSAGKEV 263
G L F I G DEG Y C+A N G+ V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 98 PRQQSAPEGSQVTIECKSND-PSATIKWSKDNQE-------------QLPPNMIAGETLI 143
P +G T+ CK+ P+ TI+W K + LP + ++
Sbjct: 16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQV 175
++ DEGVY+C +N G AS++V
Sbjct: 76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAV-------YTIAS 334
E +S+ G ++ + +G P P VSW Y+ R ++ D+L V
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSW--YLN--GRTVQSDDLHKMIVSEKGLHSLIFEV 68
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVE 363
VR SDAG Y C+ KN AG E TV ++
Sbjct: 69 VRASDAGAYACVAKNRAG--EATFTVQLD 95
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 207 AGEPSPTQTW------IRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
+G P+P +W ++ D+ K + E G+ L F + D G Y C+A+N
Sbjct: 30 SGLPAPDVSWYLNGRTVQSDDLHKM-----IVSEKGLHSLIFEVVRASDAGAYACVAKNR 84
Query: 259 AGKEVMNAYIHVLT 272
AG+ + VL
Sbjct: 85 AGEATFTVQLDVLA 98
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD---- 220
N F YA + V+ P A G A+++C A + +WI P+
Sbjct: 335 NYFTCYAPVIVE----------PPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVM 382
Query: 221 NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
G + + V + G L F N+ D G YTC+ NS G +A ++V
Sbjct: 383 THGAYKVRIAVLSD-GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-------MIAGETLIINGITKA 150
P + EG ++C+++ ++ W N + +++ TL +T
Sbjct: 348 PADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 151 DEGVYICSIQNAQGN 165
D G+Y C + N+ GN
Sbjct: 408 DTGMYTCMVSNSVGN 422
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTI 332
V + P ++V G L+C A+ + +VSW+ + R + S
Sbjct: 343 VIVEPPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+V D G Y C+ NS G T+ V
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 207 AGEPSPTQTWIRPDNDGKF-------GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
+G P P +W R DG+ G + L + + G+Y+ A N +
Sbjct: 30 SGFPVPEVSWFR---DGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGS 86
Query: 260 GKEVMNAYIHVL--TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
G+ A + V T P + + ++VR G + L+ TG P P V + + A
Sbjct: 87 GQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146
Query: 318 NLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAG--TEEKVITVAVEHRPEY 368
+L+ +Y+ IA D+G Y NS G T + V E R E+
Sbjct: 147 SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGETREEF 201
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 271 LTLPAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELT 325
+T A T T P + V V G T E +G P+P VSW + + ++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAG 352
RA TI +V ++++G+Y N +G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSG 87
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 19/158 (12%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGV---LRFNNIATGDEGKYTCIAENSAGKE-- 262
GEP W P + V Q+ GV L N D G Y C A ++ G+
Sbjct: 28 GEPESID-WYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 86
Query: 263 ---VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFD 316
V+ Y LT V ++P E+ + GE + C + P P VSW+ + +
Sbjct: 87 ATVVLEIY-QKLTFREV-VSPQEF---KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 141
Query: 317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
N R + + I ++ +SD G Y+C G+ A E
Sbjct: 142 DN--RFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 177
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 207 AGEPSPTQTWIRPDNDGKF-------GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
+G P P +W R DG+ G + L + + G+Y+ A N +
Sbjct: 30 SGFPVPEVSWFR---DGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGS 86
Query: 260 GKEVMNAYIHVL--TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
G+ A + V T P + + ++VR G + L+ TG P P V + + A
Sbjct: 87 GQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146
Query: 318 NLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAG 352
+L+ +Y+ IA D+G Y NS G
Sbjct: 147 SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 271 LTLPAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELT 325
+T A T T P + V V G T E +G P+P VSW + + ++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAG 352
RA TI +V ++++G+Y N +G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSG 87
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVRPGEPLTLEC 296
+ F+++ D G+YTC+ G+ IH+ L P T S SV G L C
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTC 126
Query: 297 -EATGRPMPTVSWVKY-IAPFDRNLERDELTSRAVYTI---------ASVRESDAGQYKC 345
E G P SW K I+ + ++ + +TI V D+G+Y C
Sbjct: 127 SEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 186
Query: 346 IGKNSAGT 353
+N GT
Sbjct: 187 QAQNGYGT 194
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRAD 200
+ + +T+ D G Y C + G Q+Y + + + P + + + +G+RA
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGG---QNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAV 123
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-----------GVLRFNNIATGDEG 249
+ C G P +W + D D + + G L F+ + D G
Sbjct: 124 LTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 250 KYTCIAENSAGKEVMNAYIHV 270
+Y C A+N G + + H+
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHM 203
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G A+++C P + W+ P+ + P + V + G L F+++ D G Y
Sbjct: 367 GRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND-GTLNFSHVLLSDTGVY 422
Query: 252 TCIAENSAGKEVMNAYIHVLT 272
TC+ N AG +AY++V T
Sbjct: 423 TCMVTNVAGNSNASAYLNVST 443
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPP-------NMIAGETLIINGITKA 150
PR + EG ++C++ P +++KW N L +++ TL + + +
Sbjct: 359 PRDLNISEGRMAELKCRT-PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 151 DEGVYICSIQNAQGN 165
D GVY C + N GN
Sbjct: 418 DTGVYTCMVTNVAGN 432
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 236 GVLRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
G + N DEG+Y C ++ AG + VL P ++ P + G L
Sbjct: 79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAA 138
Query: 295 ECEATGRPMPTVSW 308
C A G P P+V+W
Sbjct: 139 SCTAEGSPAPSVTW 152
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 130 EQLPP--NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
EQ PP N + G L+ N + +ADEG Y C + FQ ++V +P + P
Sbjct: 68 EQPPPPRNPLDGSVLLRNAV-QADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGP 126
Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTW 216
+ G C E G P+P+ TW
Sbjct: 127 ALEEG--QGLTLAASCTAE-GSPAPSVTW 152
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68
Query: 144 INGITKADEGVYICSIQNAQGNVFQDY 170
+ + +D+G Y C ++N G++ Y
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTY 95
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Query: 349 NSAGT 353
N G+
Sbjct: 86 NEYGS 90
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
G P PT W++ + K + +V + L ++ D+G YTC+ EN G
Sbjct: 33 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 13/172 (7%)
Query: 208 GEPSPTQTWIRPDN----DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P P W R DG E L ++ D Y A N G
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
Query: 264 MNAYIHV-----LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN 318
A + V + LP T+ V GE ++++ +G+P P ++W K D N
Sbjct: 90 GTASLEVEVPAKIHLPK-TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 319 LERDELTSRAVYTIA---SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
+ +R+ ++ V DAG Y KN G ++K + + V P+
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD 200
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA--------VYTIASV 335
++VR TL C+ TG P P V W + + + D L R IASV
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQ----GKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ DA Y+ N G+ ++ VE
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVE 97
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP--LTLE 295
LR +N+ D GKY C ++ E ++ L + ++ V+ E + LE
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA-----LVELKVAALGSDLHIEVKGYEDGGIHLE 139
Query: 296 CEATG-RPMPTVSWV----KYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
C +TG P P + W + I + + D + AV +R S G CI +NS
Sbjct: 140 CRSTGWYPQPQIKWSDTKGENIPAVEAPVVADGVGLYAVAASVIMRGSSGGGVSCIIRNS 199
Query: 351 AGTEEKVITVAV 362
EK ++++
Sbjct: 200 LLGLEKTASISI 211
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 221 NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE----NSAGKEVMNAYIHVLTLPAV 276
N PD+ V Q LR + DEG YTC +SA + A + + P++
Sbjct: 58 NRTALFPDLLV-QGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPY--SKPSM 114
Query: 277 TITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVK-YIAPFDRNLERDELTS-RAVYTIA 333
T+ P++ +RPG +T+ C + G P V W P N+ ++ + R ++ +
Sbjct: 115 TLEPNK--DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVH 172
Query: 334 SVRE---SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
SV G Y C+ +N ++ +V + +P P
Sbjct: 173 SVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFP 212
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWV-----KYIAPFDRNLERDELTSRAVYTI 332
+T S + ++ G LE + G P PT +W +AP L D +S
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP---ELLVDAKSSTTSIFF 62
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
S + +D+G YK KN G +E + V V+
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 208 GEPSPTQTWIRPDNDGKFGPD--VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
G P PT TW D+ P+ V+ + F + D G Y +N G++
Sbjct: 28 GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED 84
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 13 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 72
Query: 144 INGITKADEGVYICSIQNAQGNVFQDY 170
+ + +D+G Y C ++N G++ Y
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHTY 99
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 89
Query: 349 NSAGT 353
N G+
Sbjct: 90 NEYGS 94
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
G P PT W++ + K + +V + L ++ D+G YTC+ EN G
Sbjct: 37 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 93
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 13/167 (7%)
Query: 208 GEPSPTQTWIRPDN----DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P P W R DG E L ++ D Y A N G
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
Query: 264 MNAYIHV-----LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN 318
A + V + LP T+ V GE ++++ +G+P P ++W K D N
Sbjct: 90 GTASLEVEVPAKIHLPK-TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 319 LERDELTSRAVYTIA---SVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ +R+ ++ V DAG Y KN G ++K + + V
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA--------VYTIASV 335
++VR TL C+ TG P P V W + + + D L R IASV
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQ----GKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ DA Y+ N G+ ++ VE
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVE 97
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 14 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 73
Query: 144 INGITKADEGVYICSIQNAQGNVFQDY 170
+ + +D+G Y C ++N G++ Y
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHTY 100
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---TIASVRESDAGQYKCIGK 348
+ C A G PMPT+ W+K F + R + + SV SD G Y C+ +
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 90
Query: 349 NSAGT 353
N G+
Sbjct: 91 NEYGS 95
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 207 AGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
G P PT W++ + K + +V + L ++ D+G YTC+ EN G
Sbjct: 38 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 94
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 13/167 (7%)
Query: 208 GEPSPTQTWIRPDN----DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P P W R DG E L ++ D Y A N G
Sbjct: 28 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 87
Query: 264 MNAYIHV-----LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN 318
A + V + LP T+ V GE ++++ +G+P P ++W K D N
Sbjct: 88 GTASLEVEVPAKIHLPK-TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 146
Query: 319 LERDELTSRAVYTIA---SVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ +R+ ++ V DAG Y KN G ++K + + V
Sbjct: 147 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRA--------VYTIASV 335
++VR TL C+ TG P P V W + + + D L R IASV
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQ----GKEIIADGLKYRIQEFKGGYHQLIIASV 67
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ DA Y+ N G+ ++ VE
Sbjct: 68 TDDDATVYQVRATNQGGSVSGTASLEVE 95
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-YQELG--VLRFNNIATGDEGK 250
+ G A C +E G P P W + DN K ++ Y E G L + + D+ K
Sbjct: 54 VEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112
Query: 251 YTCIAENSAGKEVMNAYIHVLTL 273
YTC A NS G+ A + V T+
Sbjct: 113 YTCKAVNSLGEATCTAELLVETM 135
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELTSRAVYTIASVRESD 339
+ V G +C+ G P P V W K P + ++ DE TI+ V D
Sbjct: 51 MDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE-EGNCSLTISEVCGDD 109
Query: 340 AGQYKCIGKNSAGTEEKVITVAVE 363
+Y C NS G + VE
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVE 133
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 26/154 (16%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRAD 200
L I G DE +Y C++ N+ VF +++ + P + I P + + G A
Sbjct: 75 LTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSG-TAS 133
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ C+L P + + DN + G E E
Sbjct: 134 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 167
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPN--MIAGETLIINGITKADEGVYICS 158
G + ++C D +A I W+KD P N ++ GE L I G T D G+Y C+
Sbjct: 16 GESLELQCMLKD-AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACT 69
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-YQELG--VLRFNNIATGDEGK 250
+ G A C +E G P P W + DN K ++ Y E G L + + D+ K
Sbjct: 54 VEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112
Query: 251 YTCIAENSAGKEVMNAYIHVLTL 273
YTC A NS G+ A + V T+
Sbjct: 113 YTCKAVNSLGEATCTAELLVETM 135
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 256 ENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF 315
E++ +EV HV TI E V G +C+ G P P V W K P
Sbjct: 26 EDAFLEEVAEEKPHVKPYFTKTILDMEVVE---GSAARFDCKVEGYPDPEVMWFKDDNPV 82
Query: 316 DRN----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ ++ DE TI+ V D +Y C NS G + VE
Sbjct: 83 KESRHFQIDYDE-EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLP-PN-----MIAGET--LIINGITKADEGVYIC 157
G +V +EC+ ++ A +KW K+ +E +P P + G+ LII G TKAD Y
Sbjct: 22 GERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEY-- 79
Query: 158 SIQNAQGNVFQDYASIQVDKREMP 181
S+ G Q A + VD + P
Sbjct: 80 SVMTTGG---QSSAKLSVDLKSGP 100
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 35/154 (22%)
Query: 212 PTQTWIRPD-NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
PT+TW R + F P+ YQ + F I +G +G Y I E + V
Sbjct: 116 PTRTWNRAELAISTFWPNF--YQVI----FEVITSGHQG-YLAIDE-----------VKV 157
Query: 271 LTLPAVTITPS----EYVSVRPGEPLTLECEATGRPMPTVS----WVKYIAPFDRNLERD 322
L P T TP + V V G+ T +C A GR TV+ W++ I D L+
Sbjct: 158 LGHPC-TRTPHFLRIQNVEVNAGQFATFQCSAIGR---TVAGDRLWLQGIDVRDAPLKEI 213
Query: 323 ELTSR----AVYTIASVRESDAGQYKCIGKNSAG 352
++TS A + + + + DAG+Y+C+ + G
Sbjct: 214 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQE-QLPPNMIAGET---LIINGITK 149
+QVT + E VT+ C SND A I+W ++Q QL M + L I+ I +
Sbjct: 115 LQVT--NTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172
Query: 150 ADEGVYICSIQN 161
D G Y C I N
Sbjct: 173 EDAGEYQCEISN 184
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQE-QLPPNMIAGET---LIINGITK 149
+QVT + E VT+ C SND A I+W ++Q QL M + L I+ I +
Sbjct: 115 LQVT--NTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 172
Query: 150 ADEGVYICSIQN 161
D G Y C I N
Sbjct: 173 EDAGEYQCEISN 184
>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
Tyrosine Phosphatase Mu
Length = 259
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 212 PTQTWIRPD-NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
PT+TW R + F P+ YQ + F I +G +G Y I E + V
Sbjct: 116 PTRTWNRAELAISTFWPNF--YQVI----FEVITSGHQG-YLAIDE-----------VKV 157
Query: 271 LTLPAVTITPS----EYVSVRPGEPLTLECEATGRPMPTVS-WVKYIAPFDRNLERDELT 325
L P T TP + V V G+ T +C A GR + W++ I D L+ ++T
Sbjct: 158 LGHPC-TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVT 216
Query: 326 SR----AVYTIASVRESDAGQYKCIGKNSAG 352
S A + + + + DAG+Y+C + G
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCXIRTEGG 247
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G A+++C P + W+ P+ + P + V + G L F+++ D G Y
Sbjct: 22 GRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND-GTLNFSHVLLSDTGVY 77
Query: 252 TCIAENSAGKEVMNAYIHVLTLPA 275
TC+ N AG +AY++V + P+
Sbjct: 78 TCMVTNVAGNSNASAYLNVSSGPS 101
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPP-------NMIAGETLIINGITKA 150
PR + EG ++C++ P +++KW N L +++ TL + + +
Sbjct: 14 PRDLNISEGRMAELKCRT-PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 72
Query: 151 DEGVYICSIQNAQGN 165
D GVY C + N GN
Sbjct: 73 DTGVYTCMVTNVAGN 87
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT-SRAVYT--IASVRESDA 340
++V+ G+ ++C+ +G P P +SW P + L V++ I V DA
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 341 GQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
G Y CI N AG + + V + E GP S
Sbjct: 79 GIYTCIATNRAGQNSFSLELVVAAK-ESGPSS 109
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 207 AGEPSPTQTW------IRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENS 258
+G P+P +W +RPD+ K + +E GV L + + D G YTCIA N
Sbjct: 34 SGLPTPDLSWQLDGKPVRPDSAHKM-----LVRENGVHSLIIEPVTSRDAGIYTCIATNR 88
Query: 259 AGKEVMNAYIHVLTLPAVTITPS 281
AG+ N++ L + A PS
Sbjct: 89 AGQ---NSFSLELVVAAKESGPS 108
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITK 149
P + EG ++CK S P+ + W D + P + M+ E +LII +T
Sbjct: 16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 150 ADEGVYICSIQNAQG 164
D G+Y C N G
Sbjct: 76 RDAGIYTCIATNRAG 90
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 102/271 (37%), Gaps = 44/271 (16%)
Query: 119 SATIKWSKDNQEQLPPNMIA-------GETLIINGITKADEGVYICSIQNAQGNVFQDYA 171
SA + W + +QE PP +A L + +T D G Y C+ +++G
Sbjct: 25 SAPVVWERMSQE--PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG------- 75
Query: 172 SIQVDKREM-------PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK 224
++ D+R+ P + PN ++ + + + P + G
Sbjct: 76 -LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGD 134
Query: 225 FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA---YIHVLTLPAVTITPS 281
V + G F+ I ++ Y C + + G +++ Y++ L + ++ ++ +
Sbjct: 135 VALPVPYDHQRG---FSGIF--EDRSYIC--KTTIGDREVDSDAYYVYRLQVSSINVSVN 187
Query: 282 EYVSV-RPGEPLTLECEATGRPMPTVSWV-------KYIAPFDRNLERDELTSRAVYTIA 333
+V R GE +TL C G + W + + P L R++ I
Sbjct: 188 AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP 247
Query: 334 SVRESDAGQYKCIGKNSAGT--EEKVITVAV 362
S D+G Y C S +EK I + V
Sbjct: 248 SAELEDSGTYTCNVTESVNDHQDEKAINITV 278
>pdb|3E8U|H Chain H, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 217
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 22/129 (17%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
D G+F +E L+ NN+ GD G Y C + G + V A T
Sbjct: 63 DFKGRFAFSLETSANTAYLQINNLNNGDMGTYFCTRSHRFGLDYWGQGTSVTVSSAKTTP 122
Query: 280 PSEYVSVRPGEP-------LTLECEATGR-PMP-TVSWVKYIAPFDRNLERDELTSRAVY 330
PS Y + PG +TL C G P P TV+W S V+
Sbjct: 123 PSVY-PLAPGSAAAAAASMVTLGCLVKGYFPEPVTVTW------------NSGSLSSGVH 169
Query: 331 TIASVRESD 339
T +V +SD
Sbjct: 170 TFPAVLQSD 178
>pdb|2W65|A Chain A, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
pdb|2W65|C Chain C, Anti Citrullinated Collagen Type 2 Antibody Acc4 In
Complex With A Citrullinated Peptide
Length = 218
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
E GEP+ T D G+F +E L+ NN+ D Y C +A +
Sbjct: 54 ETGEPTYTD-----DFKGRFAFSLESSASTAFLQINNLKNEDTATYFCARATTATELAYW 108
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEP------LTLECEATGR-PMP-TVSW 308
++T+ A TP + PG +TL C G P P TV+W
Sbjct: 109 GQGTLVTVSAAKTTPPSVYPLAPGSAAQRNSMVTLGCLVKGYFPEPVTVTW 159
>pdb|2W60|A Chain A, Anti Citrullinated Collagen Type 2 Antibody Acc4
Length = 218
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
E GEP+ T D G+F +E L+ NN+ D Y C +A +
Sbjct: 54 ETGEPTYTD-----DFKGRFAFSLESSASTAFLQINNLKNEDTATYFCARATTATELAYW 108
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEP------LTLECEATGR-PMP-TVSW 308
++T+ A TP + PG +TL C G P P TV+W
Sbjct: 109 GQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 159
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQE-----LGVLRFNNIATGDEGKYTCIAENSAGKE 262
GEP P +W+R N PD + E L LR GD G YTC A N G
Sbjct: 31 GEPKPVVSWLR--NRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 88
Query: 263 VMNAYIHV 270
A + V
Sbjct: 89 QCEARLEV 96
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVYTIASVRESDAG 341
SVR G+ + + G P P VSW++ + P R + I + DAG
Sbjct: 16 SVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAG 75
Query: 342 QYKCIGKNSAGTEE 355
Y C N G +
Sbjct: 76 FYTCKAVNEYGARQ 89
>pdb|3BOV|A Chain A, Crystal Structure Of The Receptor Binding Domain Of Mouse
Pd-L2
Length = 105
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 277 TIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT------- 325
T+T P E +V G ++LEC+ R + ++ D +L+ + T
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 326 -SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+A++ I SV+ D+GQY+C+ A + K +TV V+
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 102
>pdb|3RNK|B Chain B, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
Length = 104
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 277 TIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT------- 325
T+T P E +V G ++LEC+ R + ++ D +L+ + T
Sbjct: 3 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 62
Query: 326 -SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+A++ I SV+ D+GQY+C+ A + K +TV V+
Sbjct: 63 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 101
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL----TSRAVYTIASVRESDAG 341
V G+ + LEC+ + P P + W + N +R L T R I V + DAG
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 342 QYKCIGKNSAGTEEKVITVAVEHRP 366
Y N AG + V RP
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELG---VLRF 240
I+ S+ + GD ++C + A P P W R + +F D + +YQ+ L
Sbjct: 19 IYKPQSKKVLEGDSVKLECQISA-IPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLI 77
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI 278
++ D G YT A N AG N + V P T+
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE--------QLPPNMIAGETLIINGIT 148
P+ + EG V +EC+ S P + W ++N+ L + TL+I +
Sbjct: 22 PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVN 81
Query: 149 KADEGVYICSIQNAQG 164
K D G Y S N G
Sbjct: 82 KKDAGWYTVSAVNEAG 97
>pdb|1TET|H Chain H, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 210
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
D G+F +E L+ NN+ D Y C A S +V V A T
Sbjct: 63 DFKGRFAFSLETSASTAYLQINNLKNEDTATYFC-ARRSWYFDVWGTGTTVTVSSAKTTP 121
Query: 280 PSEYVSVRPGEPLTLECEATGR-PMP-TVSW 308
PS Y + PG +TL C G P P TV+W
Sbjct: 122 PSVY-PLAPGSMVTLGCLVKGYFPEPVTVTW 151
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VLRFNNIATGDEGKYTCIAENSAG 260
V GEP PT W + G ++ ++ G L + T D G YTC +NSAG
Sbjct: 28 VKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG 86
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR--NLERDELTSRAVYTIA 333
V +T + +V +ATG P PT W K + + E I
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIH 67
Query: 334 SVRESDAGQYKCIGKNSAGT 353
SD+G Y C KNSAG+
Sbjct: 68 KTDTSDSGLYTCTVKNSAGS 87
>pdb|1UJ3|A Chain A, Crystal Structure Of A Humanized Fab Fragment Of Anti-
Tissue-Factor Antibody In Complex With Tissue Factor
Length = 215
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
++Q+T P SA G +VTI CK S D + + W + E+ P ++I T + +G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCKASQDIKSFLSWYQQKPEKAPKSLIYYATSLADGVPS 60
Query: 150 ADEGV-----YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
G Y +I + Q F Y +Q H + TF G + +I+
Sbjct: 61 RFSGSGSGTDYTLTISSLQPEDFATYYCLQ-----------HGESPYTFGGGTKVEIKRT 109
Query: 205 LEA 207
+ A
Sbjct: 110 VAA 112
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV----KYIAPFDRNLERDELTSRAV 329
P + PS+ +S+ G+ LT+ C TG P P V+W K + +
Sbjct: 6 PKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
I V++ D G Y N G++ + + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWS-----KDNQEQ---LPPNMIAGETLI 143
+++ P S EG +T+ C + +P+ + WS +QEQ N TLI
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLI 66
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
I + K D G+Y S+ N G+ D A++ + R +
Sbjct: 67 IMDVQKQDGGLYTLSLGNEFGS---DSATVNIHIRSI 100
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 208 GEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
GEP+P TW I G+F +E +L L ++ D G YT N G
Sbjct: 31 GEPTPEVTWSCGGRKIHSQEQGRF--HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGS 88
Query: 262 EVMNAYIHVLTL 273
+ IH+ ++
Sbjct: 89 DSATVNIHIRSI 100
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV----KYIAPFDRNLERDELTSRAV 329
P + PS+ +S+ G+ LT+ C TG P P V+W K + +
Sbjct: 8 PKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
I V++ D G Y N G++ + + +
Sbjct: 67 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWS-----KDNQEQ---LPPNMIAGETLI 143
+++ P S EG +T+ C + +P+ + WS +QEQ N TLI
Sbjct: 9 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLI 68
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
I + K D G+Y S+ N G+ D A++ + R +
Sbjct: 69 IMDVQKQDGGLYTLSLGNEFGS---DSATVNIHIRSI 102
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 208 GEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
GEP+P TW I G+F +E +L L ++ D G YT N G
Sbjct: 33 GEPTPEVTWSCGGRKIHSQEQGRF--HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGS 90
Query: 262 EVMNAYIHVLTL 273
+ IH+ ++
Sbjct: 91 DSATVNIHIRSI 102
>pdb|1QFW|M Chain M, Ternary Complex Of Human Chorionic Gonadotropin With Fv
Anti Alpha Subunit And Fv Anti Beta Subunit
Length = 108
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDP-SATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
E+ +P+ S G +VT+ CK+++ + + W + EQ P +I G + +G+
Sbjct: 3 ELTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRF 62
Query: 152 EGV-----YICSIQNAQGNVFQDY 170
G + +I + Q F DY
Sbjct: 63 TGSGSATDFTLTISSVQAEDFADY 86
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 208 GEPSPTQTWI---RPDNDGKFGPDVEVYQE----LGVLRFNNIATGDEGKYTCIAENSAG 260
G P PT W+ +P + K VE YQE G L FN + G YT IA+N G
Sbjct: 31 GNPPPTLHWLHNGQPLRESKII-HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG 89
Query: 261 --KEVMNAYIHVLTLPAVTITPSEYVSV 286
+ +N + P ++P+ ++V
Sbjct: 90 TANQTINGHFLKEPFPVDEVSPTPPITV 117
>pdb|2VSD|A Chain A, Crystal Structure Of Chir-Ab1
Length = 105
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
L P++++ PS+ VS+ G+ +TL C W+ FD+ E+D+ A +
Sbjct: 3 LPQPSLSLHPSQGVSL--GDTVTLRCHLPRMAAWVQLWLNGTLRFDK--EKDKEQDAAEF 58
Query: 331 TIASVRESDAGQYKC 345
+ A DAG Y+C
Sbjct: 59 SFAVTNLEDAGTYQC 73
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGE--------------- 140
+P+ S G +VT+ CK+++ T + W + EQ P +I G
Sbjct: 7 SPKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
TL I+ + D Y C N+ F +++ + + P + I P +S+
Sbjct: 67 SATDFTLTISSVQAEDLADYHCGQGNSYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--TIASVRESDAGQYKCI 346
G+ C P V+W K ++++ + + Y TI V+ D G+Y
Sbjct: 391 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 450
Query: 347 GKNSAGTEEKVITVAVEHRPE---YGPISPRPGA 377
KNS GT+E+++ + V E + P+ P A
Sbjct: 451 AKNSYGTKEEIVFLNVTRHSEPLKFEPLEPMKKA 484
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 39/181 (21%)
Query: 230 EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPG 289
+ + G L ++ DEG YTC VM + + LP P + + VR G
Sbjct: 78 DTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE---EPRD-LRVRVG 133
Query: 290 EPLTLECEATG---RPMPTVSWV---------KYIAPFDRNLERDELTSRAVY------- 330
+ + C + + V+W+ + + +D N+ + S +
Sbjct: 134 DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLT 193
Query: 331 ----------TIASVRESDAGQYKC---IGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
+ +V+ESD G Y C +GK + K I + V ISP P
Sbjct: 194 GDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES---RKTIVLHVVQDEFQRTISPTPPT 250
Query: 378 D 378
D
Sbjct: 251 D 251
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 37/142 (26%)
Query: 141 TLIINGITKADEGVYICSIQ-NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRA 199
+L++ + KADEG+Y C I+ + V + + V E +R+ VGD
Sbjct: 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR--------VGDTT 136
Query: 200 DIQC---------------VLEAGEPSPTQTWIRPDND---------GKFGPDVEVYQEL 235
++C + +G + +T + D++ G+F V++ ++
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196
Query: 236 ----GVLRFNNIATGDEGKYTC 253
G ++ + D+G YTC
Sbjct: 197 SRNDGSIKLQTVKESDQGIYTC 218
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 105 EGSQVTIECKSND-PSATIKWSKDNQEQLPP---------NMIAGETLIINGITKADEGV 154
EG+QV I C+ PSATI W +D Q LP N + L + ++ D G
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQ-LLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 155 YICSIQNAQGNVFQDYASIQVDKREMPRI-RIHPNASQTFIVGDR 198
Y C+ N G ++ +Q D P I ++ P +S + D
Sbjct: 91 YNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDE 135
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP-----DVEVYQ--ELGVLRFNNIATGDE 248
G++ +I C + A PS T +W R DG+ P ++++Y L + D
Sbjct: 33 GNQVNITCEVFA-YPSATISWFR---DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 249 GKYTCIAENSAGKEVM 264
G Y C A N G+E +
Sbjct: 89 GNYNCTAVNRIGQESL 104
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT--SRAVYT 331
PA I P E V PGE + L CE + P V W+K ++ + D + + A+
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 332 IASVRESDAGQYKCIGKNSAGT 353
I DAG+Y C + S T
Sbjct: 67 IRGASLKDAGEYTCEVEASKST 88
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 296 CEATGRPMPTVSWVKYIAP-----FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
C+A+G P+PT + + P ++ + S A++TI + D+G + C
Sbjct: 348 CKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTV 407
Query: 351 AGTEEKVITVAVEHRP 366
AG EK ++V+ P
Sbjct: 408 AGMVEKPFNISVKVLP 423
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT--------SRA 328
P E +V G ++LEC+ R + ++ D +L+ + T +A
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
++ I SV+ D+GQY+C+ A + K +TV V+
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 102
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 289 GEPLTLECEATGRPMPTVSWV---KYIAPFDRN--LERDELTSRAVYTIASVRESDAGQY 343
G P+T C G P P + W K I+P + ++RD + +++T AS + D G Y
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD-GNY 80
Query: 344 KCIGKNSAG 352
+ N G
Sbjct: 81 TIMAANPQG 89
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELT--------SRA 328
P E +V G ++LEC+ R + ++ D +L+ + T +A
Sbjct: 7 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 66
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
++ I SV+ D+GQY+C+ A + K +TV V+
Sbjct: 67 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 101
>pdb|1NCA|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|1NCB|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCC|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCD|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
Length = 214
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PNMIAGE- 140
+P+ S G +VTI CK S D S + W + Q P P+ AG
Sbjct: 7 SPKFMSTSVGDRVTITCKASQDVSTAVVWYQQKPGQSPKLLIYWASTRHIGVPDRFAGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
TL I+ + D +Y C + F +++ + + P + I P +S+
Sbjct: 67 SGTDYTLTISSVQAEDLALYYCQQHYSPPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 18/166 (10%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY------QELGVLRFNNIATGDE 248
VG+ C + +W P N K P+ + + L N D
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSP-NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 249 GKYTCIAENSAGKE---VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT 305
G Y C+ G + +N I + TP E+ + GE + C+ PT
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF---KEGEDAVIVCDVVSSLPPT 131
Query: 306 VSWVKYIAPFDRNLERDE---LTSRAVYTIASVRESDAGQYKCIGK 348
+ W K+ D L++D + S I ++++D G Y+C G+
Sbjct: 132 IIW-KHKGR-DVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 175
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 289 GEPLTLECEATGRPMPTVSWV---KYIAPFDRN--LERDELTSRAVYTIASVRESDAGQY 343
G P+T C G P P + W K I+P + ++RD + +++T AS + D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD-GNY 81
Query: 344 KCIGKNSAG 352
+ N G
Sbjct: 82 TIMAANPQG 90
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
+ S+G EV ++ VL AV G+ L+C G P+P ++W+ P
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVI----------EGQDFVLQCSVRGTPVPRITWLLNGQP 51
Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
E ++ ++ E D G Y C+ +N+ G
Sbjct: 52 IQYARSTCEAGVAELHIQDALPE-DHGTYTCLAENALG 88
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKY 251
I G +QC + G P P TW+ ++ E GV L + D G Y
Sbjct: 24 IEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTY 79
Query: 252 TCIAENSAGKEVMNAYIHV 270
TC+AEN+ G+ +A++ V
Sbjct: 80 TCLAENALGQVSCSAWVTV 98
>pdb|3UJJ|H Chain H, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 230
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 287 RPGEPLTLECEATG-----------RPMP--TVSWVKYIAPFDRN------------LER 321
+PGE L + C+A+G R MP + W+ +I P D + +
Sbjct: 13 KPGESLKISCKASGYSFSSYWIAWVRQMPGKGLEWMGFIYPADSDTRYSPSFQGQGTISA 72
Query: 322 DELTSRAVYTIASVRESDAGQYKC 345
D+ S A +S++ SD Y C
Sbjct: 73 DKSISTAYLQWSSLKASDTAMYYC 96
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
+I P + +GD + C E SP +W R D V L N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSW-RTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS--VRPGEPLTLECEAT 299
++ G+E Y C A + K + + + P P ++S + G+P+T++C
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVKCS-- 114
Query: 300 GRPMPTVSWVKYIAPFDRNLERDEL 324
V + PFDR LE D L
Sbjct: 115 ---------VADVYPFDR-LEIDLL 129
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIATGDEGKYT 252
+GD I+C + + T+ W+ P N+ G + V G L F + D G YT
Sbjct: 260 LGDTLTIRC--DTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYT 317
Query: 253 CIAENSAGKEVMNAYIHV 270
C A E ++ + V
Sbjct: 318 CYAMGETFNETLSVELKV 335
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
+I P + +GD + C E SP +W R D V L N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSW-RTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS--VRPGEPLTLECEAT 299
++ G+E Y C A + K + + + P P ++S + G+P+T++C
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVKCS-- 114
Query: 300 GRPMPTVSWVKYIAPFDRNLERDEL 324
V + PFDR LE D L
Sbjct: 115 ---------VADVYPFDR-LEIDLL 129
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 108 QVTIECKSNDPSATIKWSKDNQE--QLPPNMIAGET----LIINGITKADEGVYICSIQN 161
+V + C+ P A ++W+KD +E + P ++ E L++ + D G Y+C I +
Sbjct: 30 RVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89
Query: 162 AQGN 165
+
Sbjct: 90 ESAS 93
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
PG L L+C A G P+P W K P ++ +Y + V G Y C
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWC 67
>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
Length = 214
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C A F+ +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYATLPTFEQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP--LTLE 295
LR +N+ D GKY C ++ E ++ L + + +V V+ E + LE
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA-----LVELKVAALGSNLHVEVKGYEDGGIHLE 139
Query: 296 CEATG-RPMPTVSW 308
C +TG P P + W
Sbjct: 140 CRSTGWYPQPQIQW 153
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
+I P + +GD + C E SP +W R D V L N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCE-SPFFSW-RTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS--VRPGEPLTLECEAT 299
++ G+E Y C A + K + + + P P ++S + G+P+T++C
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVKCS-- 114
Query: 300 GRPMPTVSWVKYIAPFDRNLERDEL 324
V + PFDR LE D L
Sbjct: 115 ---------VADVYPFDR-LEIDLL 129
>pdb|3SKJ|L Chain L, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|M Chain M, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 214
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+++ +T + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQSISTWLAWYQQKPGKAPKLLIYKASNLHTGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G +L I+G+ D Y C N+ F +++ + P + I P
Sbjct: 61 RFSGSGSGTEFSLTISGLQPDDFATYYCQQYNSYSRTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSGT-ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C N F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSNRAPATFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|3UJT|H Chain H, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
pdb|3UJT|I Chain I, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
Length = 213
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 27/120 (22%)
Query: 284 VSVRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------ 318
V VRPG + L C+A+G RP + W+ I P N
Sbjct: 10 VLVRPGASVKLSCKASGYTFTSSWMHWAKQRPGQGLEWIGEIHPNSGNTNYNEKFKGKAT 69
Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR--PEYGPISPRPG 376
L D +S A ++S+ D+ Y C+ + + ++TV+ P P++P G
Sbjct: 70 LTVDTSSSTAYVDLSSLTSEDSAVYYCVRGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCG 129
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 286 VRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--TIASVRESDAGQY 343
V G+ C P V+W K ++++ + + Y TI V+ D G+Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553
Query: 344 KCIGKNSAGTEEKVITVAV 362
KNS GT+E+++ + V
Sbjct: 554 TVRAKNSYGTKEEIVFLNV 572
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAV-TITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
G+Y+C+ + + A I + P V + SE+++ GE L C++ P P
Sbjct: 62 GEYSCVF---LPEPMGTANIQLHGPPRVKAVKSSEHIN--EGETAMLVCKSESVP-PVTD 115
Query: 308 WVKY-IAPFDRNLERDELTSRAVYTIASVR----------ESDAGQYKCIGKNSAGTEEK 356
W Y I + + SR + + R E+D GQY+C G +S G+++
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Query: 357 VITVAV 362
+IT+ V
Sbjct: 176 IITLRV 181
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 86 YLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSA--TIKWSKDNQEQLPPNMI----AG 139
Y+ A+ + ++ + EG + + C DP+ ++ ++ Q+ +
Sbjct: 84 YVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW 143
Query: 140 ETLIINGITKADEGVYICS--IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD 197
II D Y+C + + + + E P+I++ P + I G+
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEP-SKLVRIRGE 202
Query: 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV----YQELGVLRFNNIATGDEGKYTC 253
A I C E R D + + + Y+++ L N + D G Y+C
Sbjct: 203 AAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSC 262
Query: 254 IAENSAGKEVMNAYIHVL 271
+A N G V+
Sbjct: 263 VASNDVGTRTATMNFQVV 280
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERDELTSRA 328
P + + PS+ V +R GE + C AT + K P + + + +
Sbjct: 187 PQIKLEPSKLVRIR-GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVR 245
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
++ +V DAG Y C+ N GT + V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|3O2D|H Chain H, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 225
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRNLERDE--------- 323
V+PG + + C+A+G +P + W+ YI P++ + DE
Sbjct: 12 VKPGASVKMSCKASGYTFTSYVIHWVRQKPGQGLDWIGYINPYNDGTDYDEKFKGKATLT 71
Query: 324 ---LTSRAVYTIASVRESDAGQYKC 345
TS A ++S+R D Y C
Sbjct: 72 SDTSTSTAYMELSSLRSEDTAVYYC 96
>pdb|3AUV|A Chain A, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|B Chain B, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|C Chain C, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|D Chain D, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|E Chain E, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|F Chain F, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
Length = 276
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 91 ANEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
+ ++Q+T P SA G +VTI C+ S D S + W + + P +I + + +G+
Sbjct: 10 SGDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGV 69
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 86 YLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSA--TIKWSKDNQEQLPPNMI----AG 139
Y+ A+ + ++ + EG + + C DP+ ++ ++ Q+ +
Sbjct: 84 YVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW 143
Query: 140 ETLIINGITKADEGVYICS--IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD 197
II D Y+C + + + + E P+I++ P + I G+
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEP-SKLVRIRGE 202
Query: 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV----YQELGVLRFNNIATGDEGKYTC 253
A I C E R D + + + Y+++ L N + D G Y+C
Sbjct: 203 AAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSC 262
Query: 254 IAENSAGKEVMNAYIHVL 271
+A N G V+
Sbjct: 263 VASNDVGTRTATMNFQVV 280
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERDELTSRA 328
P + + PS+ V +R GE + C AT + K P + + + +
Sbjct: 187 PQIKLEPSKLVRIR-GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVR 245
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
++ +V DAG Y C+ N GT + V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|4DKE|L Chain L, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKE|M Chain M, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
Length = 214
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C N F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSFYFPNTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 23/90 (25%)
Query: 268 IHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPF 315
+ VL A TIT + E + GE + + C A+G P P + W K +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62
Query: 316 DRNLERDELTSRAVYTIASVRESDAGQYKC 345
+RNL TI VR+ D G Y C
Sbjct: 63 NRNL-----------TIRRVRKEDEGLYTC 81
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 101 QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVY 155
Q+ G + + C S +P I W KDN+ + + I L I + K DEG+Y
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 79
Query: 156 IC 157
C
Sbjct: 80 TC 81
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRE---SDAGQYKC 345
GE L L G+P P V W K AP D + R + + T+ VR+ SD+G+Y+
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTS--RVHVRTSDFDTVFFVRQAARSDSGEYEL 96
>pdb|1EAP|A Chain A, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 213
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
E+ +P SA G +VTI CK S D I W + + P +I + ++ GI
Sbjct: 3 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPSRF 62
Query: 152 EGV-----YICSIQNAQGNVFQDYASIQV---------DKREM------PRIRIHPNASQ 191
G Y SI N +G Y +Q K E+ P + I P +S+
Sbjct: 63 RGSGSGRDYSFSISNLEGGDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSE 122
Query: 192 TFIVGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 123 QLTSGG-ASVVCFLNNFYP 140
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 105 EGSQVTIECKSNDPSATIKWSKD------NQEQLPPNMIAGETLIINGITKADEGVYICS 158
E CK+ P+AT+ W K + + P L I+ + KAD Y C
Sbjct: 22 EKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD 81
Query: 159 IQNAQ 163
I AQ
Sbjct: 82 IGQAQ 86
>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 215
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
E+Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 2 ELQMTQSPSSLSASVGDRVTITCRASQDISIRLNWYQQKPGKAPKLLIYDASTLESGVPS 61
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C N+ F +++ + P + I P
Sbjct: 62 RFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGTKVEIKRTVAAPSVFIFPP 121
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 122 SDEQLKSG-TASVACLLNNFYPREAKVQWKVDNALQSGNSQESVTE 166
>pdb|1QFU|H Chain H, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 223
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
VRPG + L C+A+G RP + W+ I P+D L
Sbjct: 12 VRPGASVKLSCKASGYTLTTYWMNWFKQRPDQGLEWIGRIDPYDSETHYNQKFKDKAILT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D +S A ++S+ D+ Y C
Sbjct: 72 VDRSSSTAYMQLSSLTSEDSAVYYC 96
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGVYICSIQNAQ 163
G + + C+ D +I W +D + + N I GE + + AD G+Y C +
Sbjct: 24 GDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPS 83
Query: 164 GN 165
G+
Sbjct: 84 GS 85
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 104 PEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA 162
PE SQ T C++ +P +K KD LP GE++ + T+ EG Y+C ++
Sbjct: 383 PENSQQTPMCQAWGNPLPELKCLKDGTFPLP----IGESVTV---TRDLEGTYLCRARST 435
Query: 163 QGNVFQD 169
QG V ++
Sbjct: 436 QGEVTRE 442
>pdb|3HMW|L Chain L, Crystal Structure Of Ustekinumab Fab
pdb|3HMX|L Chain L, Crystal Structure Of Ustekinumab FabIL-12 Complex
Length = 214
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
++Q+T P SA G +VTI C+ S S+ + W + E+ P ++I
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQGISSWLAWYQQKPEKAPKSLIYAASSLQSGVPS 60
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
TL I+ + D Y C N F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQYNIYPYTFGQGTKLEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 238 LRFNNIATGDEGKYTCI-AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR-PGEPLTL- 294
LR + DEG YTC+ G ++ ++ VL P T +E V+ GEP+ +
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT---AEVQKVQLTGEPVPMA 136
Query: 295 ECEAT-GRPMPTVSWVKYIAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGK 348
C +T GRP ++W + + + +T +++ + + D Q C +
Sbjct: 137 RCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 196
Query: 349 NSAGTEEKVITVAV 362
+ + + +++TV++
Sbjct: 197 HESFEKPQLLTVSL 210
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP--LTLE 295
LR +N+ D GKY C ++ E ++ L + +V V+ + + LE
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA-----LVELKVAALGSDLHVDVKGYKDGGIHLE 139
Query: 296 CEATG-RPMPTVSW 308
C +TG P P + W
Sbjct: 140 CRSTGWYPQPQIQW 153
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP--LTLE 295
LR +N+ D GKY C ++ E ++ L + +V V+ + + LE
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA-----LVELKVAALGSDLHVDVKGYKDGGIHLE 139
Query: 296 CEATG-RPMPTVSW 308
C +TG P P + W
Sbjct: 140 CRSTGWYPQPQIQW 153
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 104 PEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA 162
PE SQ T C++ +P +K KD LP GE++ + T+ EG Y+C ++
Sbjct: 199 PENSQQTPMCQAWGNPLPELKCLKDGTFPLP----IGESVTV---TRDLEGTYLCRARST 251
Query: 163 QGNVFQD 169
QG V ++
Sbjct: 252 QGEVTRE 258
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 104 PEGSQVTIECKS-NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA 162
PE SQ T C++ +P +K KD LP GE++ + T+ EG Y+C ++
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCLKDGTFPLP----IGESVTV---TRDLEGTYLCRARST 250
Query: 163 QGNVFQD 169
QG V ++
Sbjct: 251 QGEVTRE 257
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 31/112 (27%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP-----------------------FDRN 318
+ + V G L L+ +G P PTV W K I FD+
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 85
Query: 319 L-------ERDELT-SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
L R E T R+++T+ + D G Y KN G ++ +TV V
Sbjct: 86 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 238 LRFNNIATGDEGKYTCI-AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR-PGEPLTL- 294
LR + DEG YTC+ G ++ ++ VL P T +E V+ GEP+ +
Sbjct: 79 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT---AEVQKVQLTGEPVPMA 135
Query: 295 ECEAT-GRPMPTVSWVKYIAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGK 348
C +T GRP ++W + + + +T +++ + + D Q C +
Sbjct: 136 RCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 195
Query: 349 NSAGTEEKVITVAV 362
+ + + +++TV++
Sbjct: 196 HESFEKPQLLTVSL 209
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELTSRAVYTIASVRE 337
E VR GE + L + TG T +W+K+ + +E E S+ TI + R+
Sbjct: 15 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK--LTILAARQ 72
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
G Y + +N G+ + + + V +P+
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102
>pdb|3KS0|L Chain L, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|J Chain J, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 214
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ ++ VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWDSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|2JJV|A Chain A, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
pdb|2JJV|B Chain B, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
Length = 127
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP------------FDRNLERDEL 324
I P + +SV GE TL C T P+ + W + P F R +L
Sbjct: 7 IQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDL 66
Query: 325 TSR----AVYTIASVRESDAGQYKCIG-----------KNSAGTEEKV 357
T R I+++ +DAG Y C+ K+ AGTE V
Sbjct: 67 TKRNNMDFSIRISNITPADAGTYYCVKFRKGSPDHVEFKSGAGTELSV 114
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 16/134 (11%)
Query: 196 GDRADIQCVLEA-GEPSPTQTWIRPDNDGKFGPDVEVYQELG-----------VLRFNNI 243
G ++C L+ GEP P W+R + + LG LR ++
Sbjct: 17 GLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 244 ATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
D G+Y C+ V Y+ + LP P + +V P L C+A G P
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDR-TVAANTPFNLSCQAQGPP 134
Query: 303 MPT-VSWVKYIAPF 315
P + W++ P
Sbjct: 135 EPVDLLWLQDAVPL 148
>pdb|1JNH|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|C Chain C, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|E Chain E, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|G Chain G, Crystal Structure Of Fab-Estradiol Complexes
Length = 212
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I+G
Sbjct: 15 GETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +YIC++ + +F + V + P + + P +S+ + ++A
Sbjct: 75 LTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVLGQPKSSPSVTLFPPSSEE-LETNKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|3BN9|C Chain C, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|E Chain E, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
Length = 214
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S S+ + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASSLQSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D VY C F D +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFAVYYCQQHGNLPYTFGDGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1JN6|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
Length = 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I+G
Sbjct: 15 GETVTLTCRSSSGAITTSHYANWIQEKPDHLFTGLISGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +YIC++ + +F + V + P + + P +S+ + ++A
Sbjct: 75 LTITGAQTEDEAIYICALWFSNQFIFGSGTKVTVLGQPKSSPSVTLFPPSSEE-LETNKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|1XGY|H Chain H, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
pdb|1XGY|I Chain I, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
Length = 219
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
VRPG + + C+A+G RP + W+ +I P + N L
Sbjct: 12 VRPGASVKISCKASGYTFTDYYINWVKQRPGQGLEWIGWIFPRNGNTKYNEKFKGKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 72 VDKSSSTAFMQLSSLTSEDSAVYFC 96
>pdb|1WTL|A Chain A, Comparison Of Crystal Structures Of Two Homologous
Proteins: Structural Origin Of Altered Domain
Interactions In Immunoglobulin Light Chain Dimers
pdb|1WTL|B Chain B, Comparison Of Crystal Structures Of Two Homologous
Proteins: Structural Origin Of Altered Domain
Interactions In Immunoglobulin Light Chain Dimers
Length = 108
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++Q+T P SA G +VTI C+ S D + + W + Q P +I G +++ G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDITNYVNWFQQRPGQAPKVLIYGASILETGV 58
>pdb|1SM3|L Chain L, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 215
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V ++ P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGSEKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 22/176 (12%)
Query: 109 VTIECKSNDPSATIK---WSKDNQEQLPPNMIAGET-LIINGITKADEGVYICSIQNAQG 164
VT++C S T+ W+K+ E A IN D G Y C
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHF--- 77
Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--- 221
V A+ ++ + P I H S+ G A + C G P P W + +N
Sbjct: 78 -VSAPKANATIEVKAAPDITGHKR-SENKNEGQDAMMYC-KSVGYPHPEWMWRKKENGVF 134
Query: 222 ------DGKFGP-DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
G+F + E Y EL ++ T D G+Y C A NS G ++ + V
Sbjct: 135 EEISNSSGRFFIINKENYTELNIVNLQ--ITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
R N D G+Y C+ + + NA I V P +T + G+ + C++
Sbjct: 59 RINKPRAEDSGEYHCVYHFVSAPKA-NATIEVKAAPDIT-GHKRSENKNEGQDAMMYCKS 116
Query: 299 TGRPMPTVSWVK----YIAPFDRNLERDELTSRAVYTIASVRE----SDAGQYKCIGKNS 350
G P P W K + R + ++ YT ++ D G+Y+C NS
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 351 AGT 353
G+
Sbjct: 177 IGS 179
>pdb|3I2C|H Chain H, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 222
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP- 291
Q L L NN+ T D Y C+ E G ++T+ A TP + PG
Sbjct: 78 QGLLYLLMNNLKTEDTAMYYCMREGIYGSFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAA 137
Query: 292 -----LTLECEATGR-PMP-TVSW 308
+TL C G P P TV+W
Sbjct: 138 QTNSMVTLGCLVKGYFPEPVTVTW 161
>pdb|1UYW|L Chain L, Crystal Structure Of The Antiflavivirus Fab4g2
pdb|1UYW|N Chain N, Crystal Structure Of The Antiflavivirus Fab4g2
Length = 212
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGE--------------- 140
+P+ S G +VT+ CK+++ T + W + EQ P +I G
Sbjct: 7 SPKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
TL I+ + D Y C + F +++ + + P + I P +S+
Sbjct: 67 SATDFTLTISSVQAEDLADYHCGQGYSYPYTFGGGTKLELKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|3SOB|L Chain L, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 237
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 75 SFLSLIIICLAYLSPQANEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ 131
+FL + + + ++Q+T P SA G +VTI C+ S D S + W + +
Sbjct: 6 AFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGK 65
Query: 132 LPPNMIAGETLIINGI 147
P +I + + +G+
Sbjct: 66 APKLLIYSASFLYSGV 81
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL 235
D P+I + P +Q+ I G C + SP DN+ + E Y L
Sbjct: 6 DDFPXPQITVQPE-TQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHL 64
Query: 236 -----------GVLRFNNIATGDEGKYTCIAENSAGK 261
+LR N+ EG Y C+ N G
Sbjct: 65 RAQGGELXEYTTILRLRNVEFTSEGXYQCVISNHFGS 101
>pdb|1EAP|B Chain B, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 216
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + + C+A+G RP + W+ YI+P + + L
Sbjct: 12 VKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A + S+ D+ Y C
Sbjct: 72 ADQSSSTAYMQLNSLTSEDSAVYFC 96
>pdb|3KHO|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHO|B Chain B, Crystal Structure Of Murine Ig-Beta (Cd79b) Homodimer
pdb|3KHQ|A Chain A, Crystal Structure Of Murine Ig-Beta (Cd79b) In The
Monomeric Form
Length = 133
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE------------TLIIN 145
PR + S V C +N S + W + Q P +++ E TL I
Sbjct: 24 PRFAAKKRSSMVKFHCYTNH-SGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQ 82
Query: 146 GITKADEGVYIC 157
I D G+Y C
Sbjct: 83 NIQYEDNGIYFC 94
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 92 NEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------P 134
+++Q+T P SA G +VTI C+ S S+ + W + + P P
Sbjct: 1 SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSARSLYSGVP 60
Query: 135 NMIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD-KREM--PRIRI 185
+ +G TL I+ + D Y C ++ ++F +V+ KR + P + I
Sbjct: 61 SRFSGSRSGTDFTLTISSLQPEDFATYYCQQYSSYSSLFTFGQGTKVEIKRTVAAPSVFI 120
Query: 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
P + + G A + C+L P + + DN + G E E
Sbjct: 121 FPPSDEQLKSGT-ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 168
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 238 LRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
L F + DEG YTC A + G ++ V+ P ++ V++ P C
Sbjct: 85 LAFRGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARC 143
Query: 297 EAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAV-----YTIASVRESDAGQYKCIGKNS 350
+T GRP ++W+ + ++ + + + V Y++ V +D + C ++
Sbjct: 144 VSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHE 203
Query: 351 AGTEEKVITVAVEHR 365
+ E ++ V + R
Sbjct: 204 SFEEPILLPVTLSVR 218
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 92 NEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------P 134
+++Q+T P SA G +VTI C+ S S+ + W + + P P
Sbjct: 1 SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVP 60
Query: 135 NMIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD-KREM--PRIRI 185
+ +G TL I+ + D Y C ++ ++F +V+ KR + P + I
Sbjct: 61 SRFSGSRSGTDFTLTISSLQPEDFATYYCQQYSSYSSLFTFGQGTKVEIKRTVAAPSVFI 120
Query: 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
P + + G A + C+L P + + DN + G E E
Sbjct: 121 FPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 168
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP------------FDRNLERDEL 324
I P + VSV GE TL C T P+ + W + F R EL
Sbjct: 12 IQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSEL 71
Query: 325 TSRA----VYTIASVRESDAGQYKCIG-----------KNSAGTEEKV 357
T R +I+++ +DAG Y C+ K+ AGTE V
Sbjct: 72 TKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSV 119
>pdb|1YUH|L Chain L, Fab Fragment
pdb|1YUH|A Chain A, Fab Fragment
Length = 211
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ ++L +I G
Sbjct: 14 GETVTLTCRSSTGAVTTSNYANWVQEKPDRLFTGLIGGTNNRGPGVPARFSGSLIGDKAA 73
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 74 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 132
Query: 200 DIQCVL 205
+ C +
Sbjct: 133 TLVCTI 138
>pdb|2QQK|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 214
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C A F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQAWAYLPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 31/137 (22%)
Query: 225 FGPDVEVYQELGVLRFNNIATGDEGKYTCI-----AENSAGKEVMNAYIHVLTLPAVTIT 279
F +EV Q G+L + T D G+ I EN+ ++ + Y + P + I
Sbjct: 103 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSL--YKQIGLYPVLVID 160
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESD 339
S YV+ + L+ + TG+ + +V I +R SD
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSV------------------------VINQLRLSD 196
Query: 340 AGQYKCIGKNSAGTEEK 356
AGQY C + + + +K
Sbjct: 197 AGQYLCQAGDDSNSNKK 213
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
T+I+N +T D G Y C + N +++ I++ + E P +++ N T ++G+
Sbjct: 407 TVILNQLTSRDAGFYWC-LTNGD-TLWRTTVEIKIIEGE-PNLKVPGNV--TAVLGETLK 461
Query: 201 IQCVLEAGEPSPTQTWIRPDNDG-------KFGP-----DVEVYQELGVLRFNNIATGDE 248
+ C S + W + +N G GP + + L L N + DE
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 249 GKYTC 253
G Y C
Sbjct: 522 GWYWC 526
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
+L +N +T+ADEG Y C ++ QG+ + + A++ V E
Sbjct: 510 SLTLNLVTRADEGWYWCGVK--QGHFYGETAAVYVAVEE 546
>pdb|2OYP|A Chain A, T Cell Immunoglobulin Mucin-3 Crystal Structure Revealed A
Galectin-9-Independent Binding Surface
Length = 109
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 107 SQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQ 160
SQ T E D + + K ++ QL ++ G+ +LII +T D G Y C IQ
Sbjct: 39 SQCTNELLRTD-ERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 92
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGVYICSIQNAQ 163
G + + C+ D +I W +D + N I GE + + AD G+Y C +
Sbjct: 18 GDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPS 77
Query: 164 GN 165
G+
Sbjct: 78 GS 79
>pdb|3L95|A Chain A, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
pdb|3L95|L Chain L, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
Length = 214
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C + F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQFYTTPSTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1I3G|H Chain H, Crystal Structure Of An Ampicillin Single Chain Fv, Form
1, Free
Length = 121
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 12 VRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 72 VDKSSSTAYMQLSSLTSEDSAVYFC 96
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 143 VRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLT 202
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 203 VDKSSSTAYMQLSSLTSEDSAVYFC 227
>pdb|4AT6|B Chain B, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|D Chain D, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|F Chain F, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|I Chain I, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|K Chain K, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|L Chain L, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|N Chain N, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|P Chain P, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 212
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQETPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|3R1G|L Chain L, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 214
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++Q+T P SA G +VTI C+ S D S + W + + P +I + + +G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGV 58
>pdb|3KAA|A Chain A, Structure Of Tim-3 In Complex With Phosphatidylserine
pdb|3KAA|B Chain B, Structure Of Tim-3 In Complex With Phosphatidylserine
Length = 118
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 107 SQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQ 160
SQ T E D + + K ++ QL ++ G+ +LII +T D G Y C IQ
Sbjct: 42 SQCTNELLRTD-ERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 95
>pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten
Length = 252
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 143 VRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLT 202
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 203 VDKSSSTAYMQLSSLTSEDSAVYFC 227
>pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287
pdb|1KC5|L Chain L, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 214
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGE--------------- 140
+P+ S G +VT+ CK+++ T + W + EQ P +I G
Sbjct: 7 SPKSMSMSVGEKVTLSCKASENVDTYVSWYQQRPEQPPALLIYGASNRYTGVPDRFTGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
TL I+ + D Y C + F +++ + + P + I P +S+
Sbjct: 67 SATDFTLTISSVQAEDLADYHCGQSYSYPLTFGGGTKLELKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|1GIG|L Chain L, Refined Three-Dimensional Structure Of The Fab Fragment Of
A Murine Igg1, Lambda Antibody
pdb|2VIR|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|2VIS|A Chain A, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
pdb|2VIT|A Chain A, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 210
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|4AMK|L Chain L, Fab Fragment Of Antiporphrin Antibody 13g10
Length = 212
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 251 YTCIAENSAGKEVMNAYIHVLTL------PAVTITPSEYVSVRPGEPLTLECEATGRPMP 304
Y C A G++VM+ I + PA+T+ P+E V +R GE + C A+ +
Sbjct: 159 YQCSAL-MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR-GEAAQIVCSASSVDVN 216
Query: 305 TVSWV-----KYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
++ K P + + + V AG Y C+ N G
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG 269
>pdb|2ZPK|H Chain H, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|I Chain I, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 216
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
D G+F +E + L NN+ D Y C E V ++T+ A T
Sbjct: 63 DFKGRFAFSLETSASIAYLHINNLKNEDTATYFCAREGPG--FVYWGQGTLVTVSAAKTT 120
Query: 280 PSEYVSVRPGEP------LTLECEATGR-PMP-TVSW 308
P + PG +TL C G P P TV+W
Sbjct: 121 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 157
>pdb|1LO4|H Chain H, Retro-Diels-Alderase Catalytic Antibody 9d9
Length = 220
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 286 VRPGEPLTLECEATGRPMPT--VSWVK 310
V+PG LTL CEA+G + T +SWV+
Sbjct: 12 VKPGGSLTLSCEASGFTLRTYGMSWVR 38
>pdb|2HFG|L Chain L, Crystal Structure Of Hbr3 Bound To Cb3s-fab
Length = 214
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSQISPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1NGQ|L Chain L, N1g9 (igg1-lambda) Fab Fragment
pdb|1NGP|L Chain L, N1g9 (Igg1-Lambda) Fab Fragment Complexed With
(4-Hydroxy-3- Nitrophenyl) Acetate
Length = 215
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|2ZPK|L Chain L, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|M Chain M, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 212
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAGE--------------------T 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIVGTNNRVPGVPPRFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|2HFF|A Chain A, Crystal Structure Of Cb2 Fab
pdb|2HFF|L Chain L, Crystal Structure Of Cb2 Fab
Length = 214
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++Q+T P SA G +VTI C+ S D S + W + + P +I + + +G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGV 58
>pdb|2FJF|L Chain L, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|A Chain A, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|C Chain C, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|E Chain E, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|G Chain G, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|J Chain J, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|M Chain M, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|O Chain O, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|Q Chain Q, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|S Chain S, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|U Chain U, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|W Chain W, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJG|L Chain L, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2FJG|A Chain A, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2H9G|A Chain A, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2H9G|L Chain L, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2R0K|L Chain L, Protease Domain Of Hgfa With Inhibitor Fab58
pdb|2R0L|L Chain L, Short Form Hgfa With Inhibitory Fab75
pdb|3GRW|L Chain L, Fgfr3 In Complex With A Fab
Length = 214
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++Q+T P SA G +VTI C+ S D S + W + + P +I + + +G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGV 58
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP------------FDRNLERDEL 324
I P + VSV GE TL C T P+ + W + F R EL
Sbjct: 7 IQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSEL 66
Query: 325 TSR----AVYTIASVRESDAGQYKCIG-----------KNSAGTEEKV 357
T R +I+++ +DAG Y C+ K+ AGTE V
Sbjct: 67 TKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSV 114
>pdb|3RHW|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 210
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATI----KWSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTINFANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|3U30|B Chain B, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|E Chain E, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 214
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSAKFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 211
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PNMIAGE- 140
+P SA G +VT+ CK S + + + W + + P P+ +G
Sbjct: 7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV 195
TL I+ + D Y C Q G F +++ KR P + I P +++
Sbjct: 67 SGTDYTLTISSLQPEDVATYFC-YQYNNGYTFGAGTKLEL-KRTAPTVSIFPPSTEQLAT 124
Query: 196 GDRADIQCVLEAGEP 210
G A + C++ P
Sbjct: 125 GG-ASVVCLMNNFYP 138
>pdb|1Q0X|L Chain L, Anti-Morphine Antibody 9b1 Unliganded Form
pdb|1Q0Y|L Chain L, Anti-Morphine Antibody 9b1 Complexed With Morphine
Length = 212
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT+ C+S+ + T W ++ + L +I G
Sbjct: 15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ +A
Sbjct: 75 LTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTA-KA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|3KG5|A Chain A, Crystal Structure Of Human Ig-Beta Homodimer
pdb|3KG5|B Chain B, Crystal Structure Of Human Ig-Beta Homodimer
Length = 134
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-------------TLI 143
+PR + G V + C N S + W + P + E TL
Sbjct: 24 SPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLT 83
Query: 144 INGITKADEGVYICSIQ-NAQGNVFQ 168
I GI D G+Y C + N V+Q
Sbjct: 84 IQGIRFEDNGIYFCQQKCNNTSEVYQ 109
>pdb|3P0V|L Chain L, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0V|M Chain M, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0Y|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAIN III OF EGFR
Extracellular Region
pdb|3P11|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D + + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDLATDVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C + F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSEPEPYTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|4A6Y|L Chain L, Crystal Structure Of Fab Fragment Of Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Antibody Bbe6.12h3
Length = 211
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 106 GSQVTIECKSNDPSATIK----WSKDNQEQLPPNMIAG--------------------ET 141
G VT++C S+ + T W ++ + L +I G
Sbjct: 15 GETVTLKCASSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA 74
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV--DKREMPRIRIHPNASQTFIVGDRA 199
L I G DE +Y C++ + VF + V + P + + P +S+ ++A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELET-NKA 133
Query: 200 DIQCVL 205
+ C +
Sbjct: 134 TLVCTI 139
>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
Peptide
Length = 213
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 22/130 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGETLIINGITKADEGV- 154
+P+ S G +VT+ CK+++ T + W + EQ P +I G + G+ G
Sbjct: 7 SPKSMSMSVGERVTLSCKASENVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSG 66
Query: 155 ----YICSIQNAQGNVFQDYASIQVD-------------KR--EMPRIRIHPNASQTFIV 195
+ I + Q DY Q KR P + I P +S+
Sbjct: 67 SATDFTLKISSVQAEDLADYHCGQTYSYPTFGGGTKLAIKRADAAPTVSIFPPSSEQLTA 126
Query: 196 GDRADIQCVL 205
G A + C L
Sbjct: 127 GG-ASVVCFL 135
>pdb|1L7I|L Chain L, Crystal Structure Of The Anti-Erbb2 Fab2c4
pdb|1S78|C Chain C, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|E Chain E, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI CK S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYSASYRYTGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
E+Q+T P SA G VTI C+ S + + + W + Q + P P+
Sbjct: 1 ELQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPN 188
+G +L IN + D G Y C F +++ + + P + I P
Sbjct: 61 RFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLELKRADAAPTVSIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEP 210
+S+ G A + C L P
Sbjct: 121 SSEQLTSGG-ASVVCFLNNFYP 141
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 238 LRFNNIATGDEGKYTCI-AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR-PGEPLTL- 294
LR + DEG YTC+ G ++ ++ VL P T +E V+ GEP+ +
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT---AEVQKVQLTGEPVPMA 137
Query: 295 ECEAT-GRPMPTVSW 308
C +T GRP ++W
Sbjct: 138 RCVSTGGRPPAQITW 152
>pdb|2VL5|A Chain A, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|C Chain C, Structure Of Anti-Collagen Type Ii Fab Ciic1
Length = 218
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 33/124 (26%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 12 VRPGVSVKLSCKASGYTFTSYWMNWVKQRPGQGLEWIGMIHPSDSETRLSQKFKDKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT------EEKVITVAVEHR--PEYGPIS 372
D+ +S A ++S D+ Y C GT + ++TV+ P P++
Sbjct: 72 VDKSSSTAYMQLSSPTSEDSAVYYCARLKPGGTWFAYWGQGTLVTVSAAKTTAPSVYPLA 131
Query: 373 PRPG 376
P G
Sbjct: 132 PVCG 135
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 238 LRFNNIATGDEGKYTCI-AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR-PGEPLTL- 294
LR + DEG YTC+ G ++ ++ VL P T +E V+ GEP+ +
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT---AEVQKVQLTGEPVPMA 137
Query: 295 ECEAT-GRPMPTVSW 308
C +T GRP ++W
Sbjct: 138 RCVSTGGRPPAQITW 152
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP------------FDRNLERDEL 324
I P + VSV GE L C T P+ + W + P F R E
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 325 TSRA----VYTIASVRESDAGQYKCIG----------KNSAGTEEKV 357
T R +I+++ +DAG Y C+ K+ AGTE V
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV 113
>pdb|2C1P|B Chain B, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|H Chain H, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 217
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 11 VRPGTSVKLSCKASGYSFTNYWMNWLRQRPGQGLDWIGMIHPSDSETRLNQKFKDKATLT 70
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT---EEKVITVAVEHR--PEYGPISPRP 375
D +S A ++S D+ Y C + G + ++TV+ P P++P
Sbjct: 71 VDRSSSTAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKTTPPSVYPLAPGS 130
Query: 376 GA 377
A
Sbjct: 131 AA 132
>pdb|1CK0|H Chain H, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Unliganded Form
pdb|2CK0|H Chain H, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With A Synthetic Cyclic Peptide
pdb|3CK0|H Chain H, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With Human Angiotensin Ii
Length = 219
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH--VLTLPAVTITPSEYVSVRPGE 290
Q + L+ NN+ T D G Y C+ E M+ + LT+ + TP + PG
Sbjct: 78 QSMLYLQMNNLKTEDTGIYYCVRGRDG--EAMDYWGQGTTLTVSSAKTTPPSVYPLAPGS 135
Query: 291 P------LTLECEATGR-PMP-TVSW 308
+TL C G P P TV+W
Sbjct: 136 AAQTNSMVTLGCLVKGYFPEPVTVTW 161
>pdb|3D2U|D Chain D, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
pdb|3D2U|H Chain H, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
Length = 198
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATG--------RPMPTVSWVKYIAPFDRNLERDEL 324
LP T+ + G P+TL C+ R T W+ I EL
Sbjct: 3 LPKPTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIP--------QEL 54
Query: 325 TSRAVYTIASVRESDAGQYKC-IGKNSAGTEE 355
+ + I S+ AG+Y+C G ++AG E
Sbjct: 55 VKKGQFPIPSITWEHAGRYRCYYGSDTAGRSE 86
>pdb|2C1O|B Chain B, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|H Chain H, Enaiihis Fab Fragment In The Free Form
Length = 218
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 12 VRPGTSVKLSCKASGYSFTNYWMNWLRQRPGQGLDWIGMIHPSDSETRLNQKFKDKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT---EEKVITVAVEHR--PEYGPISPRP 375
D +S A ++S D+ Y C + G + ++TV+ P P++P
Sbjct: 72 VDRSSSTAYIQLSSPTSEDSAVYYCARDDYDGAFWGQGTLVTVSAAKTTPPSVYPLAPGS 131
Query: 376 GA 377
A
Sbjct: 132 AA 133
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA--------PFDRNLERDELTSRA---V 329
+E ++V G+ LTL+C + R ++ W+ P +N + L A
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67
Query: 330 YTIASVRESDAGQYKCIG-KNSAGTEE-KVITVA 361
T+ +V D G YKC+ +S T+E KVI +A
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLA 101
>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
(Ilt2)
pdb|1P7Q|D Chain D, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
Viral Mhc Receptor
pdb|1UFU|A Chain A, Crystal Structure Of Ligand Binding Domain Of
Immunoglobulin-Like Transcript 2 (Ilt2; Lir-1)
Length = 197
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATG--------RPMPTVSWVKYIAPFDRNLERDEL 324
LP T+ + G P+TL C+ R T W+ I EL
Sbjct: 2 LPKPTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIP--------QEL 53
Query: 325 TSRAVYTIASVRESDAGQYKC-IGKNSAGTEE 355
+ + I S+ AG+Y+C G ++AG E
Sbjct: 54 VKKGQFPIPSITWEHAGRYRCYYGSDTAGRSE 85
>pdb|4GXU|N Chain N, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|P Chain P, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|R Chain R, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|T Chain T, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|V Chain V, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|X Chain X, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXV|L Chain L, Crystal Structure Of Anti-Influenza Virus Antibody 1f1
pdb|4GXV|M Chain M, Crystal Structure Of Anti-Influenza Virus Antibody 1f1
Length = 217
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 94 VQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLP----------------- 133
V P S G +VTI C SN S T+ W +QLP
Sbjct: 3 VLTQPPSASGSPGQRVTISCSGSSSNIGSYTVNW----YQQLPGTAPKLLIYSLNQRPSG 58
Query: 134 -PNMIAGE------TLIINGITKADEGVYICSIQNAQGN---VFQDYASIQV--DKREMP 181
P+ +G +L I+G+ DE VY C+ + + VF + V + P
Sbjct: 59 VPDRFSGSKSGTSASLAISGLQSEDEAVYYCAAWDDSLSAHVVFGGGTKLTVLGQPKAAP 118
Query: 182 RIRIHPNASQTFIVGDRADIQCVL 205
+ + P +S+ + ++A + C++
Sbjct: 119 SVTLFPPSSEE-LQANKATLVCLI 141
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAY-IHVLTLPA---VTITPSEYVSVRPGEP 291
G L + DEG + C A N GKE + Y + V +P + + SE + P +
Sbjct: 64 GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKV 123
Query: 292 LTLECEATGRPMPTVSW---VKYIAPFDRNLERDELTSR----AVYTIAS 334
T E + P T+SW K + P ++ + E T R ++T+ S
Sbjct: 124 GTCVSEGS-YPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQS 172
>pdb|3HC0|L Chain L, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
pdb|3HC0|B Chain B, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
Length = 213
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
++Q+T P SA G +VTI CK S + + W + + P ++I+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCKASQNVGINVAWYQQKPGKAPKSLISSASYRYSGVPS 60
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
TL I+ + D Y C + F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYFCQQYDTYPFTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAY-IHVLTLPA---VTITPSEYVSVRPGEP 291
G L + DEG + C A N GKE + Y + V +P + + SE + P +
Sbjct: 61 GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKV 120
Query: 292 LTLECEATGRPMPTVSW---VKYIAPFDRNLERDELTSR----AVYTIAS 334
T E + P T+SW K + P ++ + E T R ++T+ S
Sbjct: 121 GTCVSEGS-YPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQS 169
>pdb|1MEX|H Chain H, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 215
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + + C+A+G +P + W+ YI+P + + L
Sbjct: 12 VKPGASVKISCKASGYTFTDHAIHWVKQKPEQGLEWIGYISPGNGDIKYNEKFKGKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A + S+ D+ Y C
Sbjct: 72 ADKSSSTAYMQLNSLTSEDSAVYFC 96
>pdb|2UV3|A Chain A, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2UV3|B Chain B, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2JJS|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
Length = 126
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGR-PMPTVSWVKYIAP------------FDRNLERDEL 324
I P + VSV GE L C T P+ + W + P F R E
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 325 TSRA----VYTIASVRESDAGQYKCIG----------KNSAGTEEKV 357
T R +I+++ +DAG Y C+ K+ AGTE V
Sbjct: 67 TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV 113
>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8
Length = 266
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
IQ AQG+ +Q ++ D E P + + ++ QT + D AD
Sbjct: 144 IQAAQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADF 186
>pdb|1JHL|H Chain H, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 116
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 25/92 (27%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 12 VRPGASVKLSCKASGYTFISYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
D+ +S A ++S D+ Y C ++ G
Sbjct: 72 VDKSSSTAYMQLSSPTSEDSAVYYCTRDDNYG 103
>pdb|1BBJ|H Chain H, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|B Chain B, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 212
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + + C+A+G +P + W+ YI+P + + L
Sbjct: 12 VKPGASVKISCKASGYTFTDHAIHWAKQKPEQGLEWIGYISPGNDDIKYNEKFKGKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC----IGKNSAGTEEKVITVAVEHRPEYGPISP 373
D+ +S A + S+ D+ Y C G GT V + + + P P++P
Sbjct: 72 ADKSSSTAYMQLNSLTSEDSAVYFCKRSYYGHWGQGTTLTVSSASTK-GPSVFPLAP 127
>pdb|1FVC|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVC|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
Length = 109
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++Q+T P SA G +VTI C+ S D + + W + + P +I + + +G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGV 58
>pdb|2Y5T|A Chain A, Crystal Structure Of The Pathogenic Autoantibody Ciic1 In
Complex With The Triple-Helical C1 Peptide
Length = 232
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 25/93 (26%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDR------------NLE 320
VRPG + L C+A+G RP + W+ I P D L
Sbjct: 12 VRPGVSVKLSCKASGYTFTSYWMNWVKQRPGQGLEWIGMIHPSDSETRLSQKFKDKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
D+ +S A ++S D+ Y C GT
Sbjct: 72 VDKSSSTAYMQLSSPTSEDSAVYYCARLKPGGT 104
>pdb|1NGX|B Chain B, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
pdb|1NGX|H Chain H, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
Length = 216
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAP------------FDRNLE 320
V+PG + L C+A+G RP + W+ I P L
Sbjct: 12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNS----AGTEEKVITVAVEHRPEYGPISP 373
D+ +S A ++S+ D+ Y C ++S AGT V + + + P P++P
Sbjct: 72 VDKPSSTAYMQLSSLTSEDSAVYYCTRRDSDYWGAGTTVTVSSASTKG-PSVFPLAP 127
>pdb|1VDG|A Chain A, Crystal Structure Of Lir1.01, One Of The Alleles Of Lir1
pdb|1VDG|B Chain B, Crystal Structure Of Lir1.01, One Of The Alleles Of Lir1
Length = 197
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATG--------RPMPTVSWVKYIAPFDRNLERDEL 324
LP T+ + G P+TL C+ R T W+ I EL
Sbjct: 3 LPKPTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTALWITRIP--------QEL 54
Query: 325 TSRAVYTIASVRESDAGQYKC-IGKNSAGTEE 355
+ + I S+ AG+Y+C G ++AG E
Sbjct: 55 VKKGQFPIPSITWEHAGRYRCYYGSDTAGRSE 86
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 92 NEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------P 134
+++Q+T P SA G +VTI C+ S S+ + W + + P P
Sbjct: 1 SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVP 60
Query: 135 NMIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHP 187
+ +G TL I+ + D Y C + + F +++ + P + I P
Sbjct: 61 SRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFP 120
Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 PSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 166
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAY-IHVLTLPA---VTITPSEYVSVRPGEP 291
G L + DEG + C A N GKE + Y + V +P + + SE + P +
Sbjct: 432 GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKV 491
Query: 292 LTLECEATGRPMPTVSW---VKYIAPFDRNLERDELTSR----AVYTIAS 334
T E + P T+SW K + P ++ + E T R ++T+ S
Sbjct: 492 GTCVSEGS-YPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQS 540
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYK 344
+V PG +TL CE +P P + W+K + L V + + D G Y
Sbjct: 14 AVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPVLILPEIGPQDQGTYS 66
Query: 345 CIGKNSA 351
C+ +S+
Sbjct: 67 CVATHSS 73
>pdb|1N7M|L Chain L, Germline 7g12 With N-Methylmesoporphyrin
Length = 216
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAP------------FDRNLE 320
V+PG + L C+A+G RP + W+ I P L
Sbjct: 12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNS----AGTEEKVITVAVEHRPEYGPISP 373
D+ +S A ++S+ D+ Y C ++S AGT V + + + P P++P
Sbjct: 72 VDKPSSTAYMQLSSLTSEDSAVYYCTRRDSDYWGAGTTVTVSSASTKG-PSVFPLAP 127
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Query: 238 LRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
L F + DEG YTC A G ++ V+ P ++ V++ P C
Sbjct: 85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARC 143
Query: 297 EAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAV-----YTIASVRESDAGQYKCIGKNS 350
+T GRP ++W+ + ++ + + + V Y++ V +D + C ++
Sbjct: 144 VSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHE 203
Query: 351 AGTEEKVITVAVEHR 365
+ E ++ V + R
Sbjct: 204 SFEEPILLPVTLSVR 218
>pdb|1A0Q|H Chain H, 29g11 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 217
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + + C+A+G +P + W+ YI+P + + L
Sbjct: 12 VKPGASVKISCKASGYTFTDHVIHWVKQKPEQGLEWIGYISPGNGDIKYNEKFKGKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A + S+ D+ Y C
Sbjct: 72 ADKSSSTAYMQLNSLTSEDSAVYLC 96
>pdb|1K6Q|L Chain L, Crystal Structure Of Antibody Fab Fragment D3
Length = 210
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------------------ 137
+P SA G VTI CK S D + + W + + P +I
Sbjct: 7 SPSSMSASLGESVTITCKASRDIKSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSG 66
Query: 138 AGE--TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
+G+ +L I+ + D Y C F +++ + + P + I P +S+
Sbjct: 67 SGQDYSLTISSLESDDTATYYCLQHGESPFTFGSGTKLELKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 90/290 (31%), Gaps = 58/290 (20%)
Query: 114 KSNDPSATIKWSKDNQEQLPPNMIAGE------TLIINGITKADEGVYICSIQNAQGNVF 167
K P + + N E P+ +G TL I+ + D Y C N F
Sbjct: 43 KPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTF 102
Query: 168 QDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ------------ 214
+ + + + P + I P +S+ G A + C L P
Sbjct: 103 GAGTKLDLKRADAAPTVSIFPPSSEQLTSGG-ASVVCFLNNFYPKDINVKWKIDGSERQN 161
Query: 215 ----TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA-ENSAGKEVMNAYIH 269
+W D D K Y L YTC A ++ ++ ++
Sbjct: 162 GVLNSWT--DQDSK----DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 215
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFD 316
V + S V+PG L L C A+G P + WV I+
Sbjct: 216 --NEXEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGG 273
Query: 317 R------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
+ RD + ++S+R +D Y C+ + G E
Sbjct: 274 TYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDE 323
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYK 344
+V PG +TL CE +P P + W+K + L V + + D G Y
Sbjct: 21 AVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPVLILPEIGPQDQGTYS 73
Query: 345 CIGKNSA 351
C+ +S+
Sbjct: 74 CVATHSS 80
>pdb|1ZAN|L Chain L, Crystal Structure Of Anti-Ngf Ad11 Fab
Length = 214
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 25/137 (18%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G VTIEC+ S D + W + + P P+
Sbjct: 1 DIQMTQSPASLSASLGETVTIECRASEDIYNALAWYQQKPGKSPQLLIYNTDTLHTGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPN 188
+G +L IN + D Y C F +++ + + P + I P
Sbjct: 61 RFSGSGSGTQYSLKINSLQSEDVASYFCQHYFGYPRTFGGGTKLELKRADAAPTVSIFPP 120
Query: 189 ASQTFIVGDRADIQCVL 205
+S+ G A + C+L
Sbjct: 121 SSEQLASGG-ASVVCLL 136
>pdb|3JWO|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 209
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 32/156 (20%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYA---SIQVDKR-EMPRIRI 185
+G +L IN + D Y C Q N F + +++ + P + I
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQ----QANSFFTFGGGTKVEIKRTVAAPSVFI 116
Query: 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
P + + G A + C+L P + + DN
Sbjct: 117 FPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 151
>pdb|1NGZ|B Chain B, Chimeric Germline Fab 7g12-Apo
Length = 220
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAP------------FDRNLE 320
V+PG + L C+A+G RP + W+ I P L
Sbjct: 12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNS----AGTEEKVITVAVEHRPEYGPISP 373
D+ +S A ++S+ D+ Y C ++S AGT V + + + P P++P
Sbjct: 72 VDKPSSTAYMQLSSLTSEDSAVYYCTRRDSDYWGAGTTVTVSSASTKG-PSVFPLAP 127
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D + + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDINNYLNWYQQKPGKAPKLLIYYTSTLHSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C N F +++ + P + I P
Sbjct: 61 RFSGSGSGTDYTLTISSLQPEDFATYYCQQGNTLPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|1TZI|A Chain A, Crystal Structure Of The Fab Yads2 Complexed With H-Vegf
Length = 214
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+++ A + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQSYAYAVAWYQQKPGKAPKLLIYDASYLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C + + F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQAYSSPDTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1AHW|B Chain B, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|E Chain E, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1FGN|H Chain H, Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
Length = 214
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 25/90 (27%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
VRPG + L C+A+G RP + W+ I P + N +
Sbjct: 12 VRPGALVKLSCKASGFNIKDYYMHWVKQRPEQGLEWIGLIDPENGNTIYDPKFQGKASIT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNS 350
D ++ A ++S+ D Y C NS
Sbjct: 72 ADTSSNTAYLQLSSLTSEDTAVYYCARDNS 101
>pdb|1RZ7|L Chain L, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 48d
pdb|4DVR|L Chain L, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 212
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 32/156 (20%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYA---SIQVDKR-EMPRIRI 185
+G +L IN + D Y C Q N F + +++ + P + I
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQ----QANSFFTFGGGTKVEIKRTVAAPSVFI 116
Query: 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
P + + G A + C+L P + + DN
Sbjct: 117 FPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 151
>pdb|3JWD|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|O Chain O, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 213
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 32/156 (20%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D S + W + + P P+
Sbjct: 1 DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYA---SIQVDKR-EMPRIRI 185
+G +L IN + D Y C Q N F + +++ + P + I
Sbjct: 61 RFSGSGSGTDFSLTINSLQPEDFATYYCQ----QANSFFTFGGGTKVEIKRTVAAPSVFI 116
Query: 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
P + + G A + C+L P + + DN
Sbjct: 117 FPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 151
>pdb|1N8Z|A Chain A, Crystal Structure Of Extracellular Domain Of Human Her2
Complexed With Herceptin Fab
Length = 214
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D + + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C F +++ + P + I P
Sbjct: 61 RFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1ZEA|H Chain H, Structure Of The Anti-Cholera Toxin Antibody Fab Fragment
Te33 In Complex With A D-Peptide
Length = 216
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279
D G+F +E L+ NN+ D Y C A S +V V A T
Sbjct: 63 DFKGRFAFSLETSASTAYLQINNLKNEDTATYFC-ARRSWYFDVWGTGTTVTVSSAKTTP 121
Query: 280 PSEYVSVRPGEP------LTLECEATGR-PMP-TVSW 308
PS Y + PG +TL C G P P TV+W
Sbjct: 122 PSVY-PLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 157
>pdb|1JPS|L Chain L, Crystal Structure Of Tissue Factor In Complex With
Humanized Fab D3h44
pdb|1JPT|L Chain L, Crystal Structure Of Fab D3h44
Length = 214
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
++Q+T P SA G +VTI C+ S D + + W + + P +I T + G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPS 60
Query: 150 ADEGV-----YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
G Y +I + Q F Y +Q H + TF G + +I+
Sbjct: 61 RFSGSGSGTDYTLTISSLQPEDFATYYCLQ-----------HGESPWTFGQGTKVEIKRT 109
Query: 205 LEA 207
+ A
Sbjct: 110 VAA 112
>pdb|1PG7|L Chain L, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|M Chain M, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 213
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
++Q+T P SA G +VTI C+ S D + + W + + P +I T + G+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASRDIKSYLNWYQQKPGKAPKVLIYYATSLAEGVPS 60
Query: 150 ADEGV-----YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
G Y +I + Q F Y +Q H + TF G + +I+
Sbjct: 61 RFSGSGSGTDYTLTISSLQPEDFATYYCLQ-----------HGESPWTFGQGTKVEIKRT 109
Query: 205 LEA 207
+ A
Sbjct: 110 VAA 112
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 98 PRQQSAPEGSQVTIECK--SNDPSA--TIKWSKDNQEQLP--------------PNMIAG 139
P S G +TI C+ SND ++ W + + + P N +G
Sbjct: 7 PASVSGSPGQSITISCQGTSNDVGGYESVSWYQQHPGKAPKVVIYDVSKRPSGVSNRFSG 66
Query: 140 E------TLIINGITKADEGVYIC-SIQNAQGNVFQDYASIQV--DKREMPRIRIHPNAS 190
+L I+G+ DEG Y C S+ + + VF + V + P + + P +S
Sbjct: 67 SKSGNTASLTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSS 126
Query: 191 QTFIVGDRADIQCVL 205
+ + ++A + C++
Sbjct: 127 EE-LQANKATLVCLI 140
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 99 RQQSAPEGSQVTIECKSNDPSATIKWSKDN----QEQLPPNMIAGETLIINGITKADEGV 154
RQ G ++C A + W N E ++ + L+I +++ D GV
Sbjct: 541 RQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGV 600
Query: 155 YICSIQNAQGN--VFQ 168
Y C + N VFQ
Sbjct: 601 YQCLSEERVKNKTVFQ 616
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 34/141 (24%)
Query: 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP------------------P 134
V P S G +VTI C ++ S T+ W +QLP P
Sbjct: 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNW----YQQLPGMAPKLLIYRDAMRPSGVP 58
Query: 135 NMIAGE------TLIINGITKADEGVYICSIQNAQGN--VFQDYASIQV--DKREMPRIR 184
+G +L I+G+ DE Y C+ N+ N VF + V + P +
Sbjct: 59 TRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVT 118
Query: 185 IHPNASQTFIVGDRADIQCVL 205
+ P +S+ + ++A + C++
Sbjct: 119 LFPPSSEE-LQANKATLVCLI 138
>pdb|1B2W|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
pdb|1T04|A Chain A, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
pdb|1T04|C Chain C, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
pdb|1T3F|A Chain A, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab (Huzaf) In P21 21 21 Space Group
Length = 214
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGE--------- 140
++Q+T P SA G +VTI CK+++ T + W + + P +I G
Sbjct: 1 DIQMTQSPSTLSASVGDRVTITCKASENVDTYVSWYQQKPGKAPKLLIYGASNRYTGVPS 60
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
TL I+ + D Y C F ++V + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPDDFATYYCGQSYNYPFTFGQGTKVEVKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 21/82 (25%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PNMIAGE- 140
TP S P G VTI+C+ S S+ + W + Q P P+ G
Sbjct: 7 TPSSVSEPVGGTVTIKCQASQSISSWLSWYQQKPGQPPKLLIYDASNLASGVPSRFMGSG 66
Query: 141 -----TLIINGITKADEGVYIC 157
TL I+G+ + D Y C
Sbjct: 67 SGTEYTLTISGVQREDAATYYC 88
>pdb|3EO9|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab
pdb|3EOA|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 214
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDP-SATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+++ S + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASKTISKYLAWYQQKPGKAPKLLIYSGSTLQSGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C N F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQHNEYPLTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
+ + G A + C+L P + + DN
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDN 152
>pdb|1FVD|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVD|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
Length = 214
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PN 135
++Q+T P SA G +VTI C+ S D + + W + + P P+
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLESGVPS 60
Query: 136 MIAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
+G TL I+ + D Y C F +++ + P + I P
Sbjct: 61 RFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|4FFW|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|L Chain L, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 210
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGET--------------- 141
+P SA G +VT+ C+++ + W + P + G +
Sbjct: 7 SPAILSASPGEKVTMTCRASSSVNNMHWYQQKPSSSPKPWLHGTSNLASGVPVRFSGSGS 66
Query: 142 -----LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIV 195
L I+ + D Y C + F +++D+ + P + I P +S+
Sbjct: 67 GTSFSLTISRVEAEDAATYFCQQWSNHPPTFGGGTKLEIDRADAAPTVSIFPPSSEQLTS 126
Query: 196 GDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 GG-ASVVCFLNNFYP 140
>pdb|4DKF|L Chain L, Crystal Structure Of Human Interleukin-34 Bound To Fab2
pdb|4DKF|M Chain M, Crystal Structure Of Human Interleukin-34 Bound To Fab2
Length = 214
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
++Q+T P SA G +VTI C+ S S+ + W + + P +I G
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLAWYQQKPGKAPKLLIYGASSRASGVPS 60
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPN 188
TL I+ + D Y C ++ F +++ + P + I P
Sbjct: 61 RFSGSGSGTDFTLTISSLQPEDFATYYCQQYWSEPVTFGQGTKVEIKRTVAAPSVFIFPP 120
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ + G A + C+L P + + DN + G E E
Sbjct: 121 SDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 165
>pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|E Chain E, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|H Chain H, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|K Chain K, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 214
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNMIAGE--------------- 140
+P+ S G +VT+ CK+++ T + W + +Q P ++ G
Sbjct: 7 SPKSMSVSVGERVTLSCKASENVDTYVFWFQQKPDQSPKLLLYGPSNRYTGVPDRFTGSG 66
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFI 194
TL I+ + D Y C + F +++ + + P + I P +S+
Sbjct: 67 STTDFTLTISSVQAEDLADYHCGQSYSYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLT 126
Query: 195 VGDRADIQCVLEAGEP 210
G A + C L P
Sbjct: 127 SGG-ASVVCFLNNFYP 141
>pdb|3NFP|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFP|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFS|L Chain L, Crystal Structure The Fab Fragment Of Therapeutic Antibody
Daclizumab
Length = 212
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 24/165 (14%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP--------------PNM 136
++Q+T P SA G +VTI C ++ + + W + + P P
Sbjct: 1 DIQMTQSPSTLSASVGDRVTITCSASSSISYMHWYQQKPGKAPKLLIYTTSNLASGVPAR 60
Query: 137 IAGE------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNA 189
+G TL I+ + D Y C ++ F ++V + P + I P +
Sbjct: 61 FSGSGSGTEFTLTISSLQPDDFATYYCHQRSTYPLTFGQGTKVEVKRTVAAPSVFIFPPS 120
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+ G A + C+L P + + DN + G E E
Sbjct: 121 DEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 164
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 16/70 (22%)
Query: 106 GSQVTIECKSND-PSATIKWS---------------KDNQEQLPPNMIAGETLIINGITK 149
G V ++C+ D ++++WS +DN+ QL + ++ I+ +
Sbjct: 53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVAL 112
Query: 150 ADEGVYICSI 159
ADEG Y CSI
Sbjct: 113 ADEGEYTCSI 122
>pdb|1IND|H Chain H, How The Anti-(Metal Chelate) Antibody Cha255 Is Specific
For The Metal Ion Of Its Antigen: X-Ray Structures For
Two Fab'(Slash)hapten Complexes With Different Metals In
The Chelate
pdb|1INE|H Chain H, How The Anti-(Metal Chelate) Antibody Cha255 Is Specific
For The Metal Ion Of Its Antigen: X-Ray Structures For
Two Fab'(Slash)hapten Complexes With Different Metals In
The Chelate
Length = 226
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVK 310
VT+ S SV+PG L L C A+G + T+SWV+
Sbjct: 2 VTLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVR 38
>pdb|4HBC|L Chain L, Crystal Structure Of A Conformation-Dependent Rabbit Igg
Fab Specific For Amyloid Prefibrillar Oligomers
Length = 213
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 25/144 (17%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP--------------PNMIAGE- 140
TP S P G VTI+C+ S S+ + W + Q P P+ G
Sbjct: 7 TPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG 66
Query: 141 -----TLIINGITKADEGVYIC--SIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQT 192
TL I+ + AD Y C + +N F + V + P + I P ++
Sbjct: 67 SGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADL 126
Query: 193 FIVGDRADIQCVLEAGEPSPTQTW 216
G I CV P T TW
Sbjct: 127 VATG-TVTIVCVANKYFPDVTVTW 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,625,290
Number of Sequences: 62578
Number of extensions: 619045
Number of successful extensions: 4024
Number of sequences better than 100.0: 382
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 3209
Number of HSP's gapped (non-prelim): 820
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)