Query psy17058
Match_columns 471
No_of_seqs 345 out of 3024
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 20:47:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 5.4E-49 1.2E-53 388.4 36.7 409 8-470 108-585 (1051)
2 KOG3513|consensus 100.0 7.6E-42 1.7E-46 337.9 37.9 386 37-471 40-488 (1051)
3 KOG4222|consensus 100.0 4.1E-36 8.9E-41 294.2 21.8 389 34-469 28-481 (1281)
4 KOG4221|consensus 100.0 1.5E-34 3.2E-39 284.9 32.5 427 37-470 41-582 (1381)
5 KOG4221|consensus 100.0 2.4E-33 5.1E-38 276.5 29.2 325 89-468 39-387 (1381)
6 KOG4222|consensus 100.0 1.8E-31 3.9E-36 261.8 21.6 332 87-470 27-384 (1281)
7 KOG4194|consensus 100.0 1.4E-29 2.9E-34 233.7 25.7 272 88-365 500-798 (873)
8 PHA02785 IL-beta-binding prote 100.0 1.8E-27 4E-32 219.7 29.7 249 100-355 35-319 (326)
9 PHA02785 IL-beta-binding prote 99.9 2.8E-24 6.1E-29 198.6 24.2 212 192-455 37-266 (326)
10 KOG4194|consensus 99.9 5.9E-24 1.3E-28 196.7 20.8 241 34-279 500-804 (873)
11 PHA02826 IL-1 receptor-like pr 99.8 3.1E-19 6.7E-24 154.6 17.5 154 190-351 31-211 (227)
12 PHA02826 IL-1 receptor-like pr 99.8 8.3E-19 1.8E-23 152.0 18.9 151 99-259 30-211 (227)
13 KOG3515|consensus 99.7 1.3E-15 2.7E-20 148.8 19.2 407 47-456 17-541 (741)
14 KOG3515|consensus 99.6 3.2E-15 6.9E-20 146.0 14.2 311 90-453 6-342 (741)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 6.9E-15 1.5E-19 110.5 11.7 85 282-366 8-94 (98)
16 cd05851 Ig3_Contactin-1 Third 99.6 1.7E-14 3.6E-19 106.3 11.5 88 273-363 1-88 (88)
17 cd05851 Ig3_Contactin-1 Third 99.6 2.7E-14 5.9E-19 105.1 11.5 83 91-175 1-87 (88)
18 cd04975 Ig4_SCFR_like Fourth i 99.6 2.8E-14 6E-19 107.3 10.6 81 283-363 12-100 (101)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5.3E-14 1.2E-18 102.9 10.6 80 283-362 4-86 (86)
20 cd05745 Ig3_Peroxidasin Third 99.5 2.4E-14 5.2E-19 101.9 8.5 74 288-362 1-74 (74)
21 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.4E-13 3E-18 102.2 11.6 84 279-362 5-90 (90)
22 cd04968 Ig3_Contactin_like Thi 99.5 1.8E-13 3.9E-18 101.2 11.5 80 282-363 9-88 (88)
23 cd05737 Ig_Myomesin_like_C C-t 99.5 1.5E-13 3.2E-18 102.5 10.9 81 282-362 9-92 (92)
24 cd05863 Ig2_VEGFR-3 Second imm 99.5 8.4E-14 1.8E-18 95.6 8.7 66 292-363 1-66 (67)
25 cd05730 Ig3_NCAM-1_like Third 99.5 1.4E-13 3.1E-18 103.4 10.8 82 283-364 12-94 (95)
26 cd05852 Ig5_Contactin-1 Fifth 99.5 6.8E-14 1.5E-18 98.7 8.3 73 289-362 1-73 (73)
27 cd05735 Ig8_DSCAM Eight immuno 99.5 1.5E-13 3.2E-18 101.2 10.2 78 289-366 1-85 (88)
28 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.9E-13 4.1E-18 102.9 10.6 81 283-363 12-100 (101)
29 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.4E-13 3.1E-18 98.5 9.5 74 289-362 1-75 (76)
30 cd05892 Ig_Myotilin_C C-termin 99.5 1.1E-13 2.4E-18 97.9 8.3 71 292-362 1-75 (75)
31 cd05762 Ig8_MLCK Eighth immuno 99.5 3.4E-13 7.3E-18 101.3 11.1 87 188-275 7-95 (98)
32 cd05893 Ig_Palladin_C C-termin 99.5 1.2E-13 2.5E-18 97.9 7.8 71 292-362 1-75 (75)
33 cd05728 Ig4_Contactin-2-like F 99.5 2.9E-13 6.2E-18 99.2 9.7 79 282-362 7-85 (85)
34 cd05868 Ig4_NrCAM Fourth immun 99.5 2.8E-13 6.1E-18 96.7 9.0 75 289-363 1-76 (76)
35 cd05854 Ig6_Contactin-2 Sixth 99.5 4.5E-13 9.8E-18 97.8 10.2 77 290-366 1-85 (85)
36 cd05869 Ig5_NCAM-1 Fifth immun 99.5 8.1E-13 1.7E-17 99.5 11.9 89 273-362 2-97 (97)
37 cd04968 Ig3_Contactin_like Thi 99.5 7.6E-13 1.7E-17 97.8 11.3 84 91-175 1-87 (88)
38 cd04978 Ig4_L1-NrCAM_like Four 99.5 3.4E-13 7.3E-18 96.8 9.0 75 289-363 1-76 (76)
39 cd05723 Ig4_Neogenin Fourth im 99.5 4.3E-13 9.2E-18 94.5 8.9 71 291-362 1-71 (71)
40 cd04969 Ig5_Contactin_like Fif 99.5 4.2E-13 9.2E-18 95.2 8.8 73 289-362 1-73 (73)
41 cd05865 Ig1_NCAM-1 First immun 99.5 7.9E-13 1.7E-17 98.5 10.5 79 284-362 10-95 (96)
42 cd05747 Ig5_Titin_like M5, fif 99.5 9.3E-13 2E-17 98.2 10.9 87 273-360 3-91 (92)
43 cd05856 Ig2_FGFRL1-like Second 99.5 7.4E-13 1.6E-17 96.7 10.1 79 284-362 4-82 (82)
44 cd05876 Ig3_L1-CAM Third immun 99.5 5.5E-13 1.2E-17 93.9 8.9 71 292-363 1-71 (71)
45 cd05857 Ig2_FGFR Second immuno 99.4 6.9E-13 1.5E-17 97.5 9.7 79 284-362 4-85 (85)
46 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.2E-12 2.5E-17 98.8 10.9 80 283-362 10-96 (96)
47 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.1E-12 2.4E-17 99.0 10.6 81 282-362 9-98 (98)
48 cd04976 Ig2_VEGFR Second immun 99.4 6.4E-13 1.4E-17 93.4 8.5 70 292-363 1-70 (71)
49 cd05745 Ig3_Peroxidasin Third 99.4 5.3E-13 1.2E-17 94.9 8.2 74 195-270 1-74 (74)
50 cd05773 Ig8_hNephrin_like Eigh 99.4 1.2E-12 2.5E-17 100.5 10.5 95 272-366 3-108 (109)
51 cd05771 IgC_Tapasin_R Tapasin- 99.4 3.7E-12 7.9E-17 103.0 13.9 116 237-353 2-133 (139)
52 cd04975 Ig4_SCFR_like Fourth i 99.4 1.2E-12 2.6E-17 98.4 10.2 82 189-271 11-100 (101)
53 cd04970 Ig6_Contactin_like Six 99.4 9.3E-13 2E-17 96.6 9.4 77 290-366 1-85 (85)
54 cd05891 Ig_M-protein_C C-termi 99.4 1.2E-12 2.7E-17 97.2 10.1 81 282-362 9-92 (92)
55 PF07679 I-set: Immunoglobulin 99.4 1E-12 2.3E-17 97.8 9.7 86 276-362 3-90 (90)
56 cd05852 Ig5_Contactin-1 Fifth 99.4 8.4E-13 1.8E-17 93.1 8.6 73 196-270 1-73 (73)
57 cd05748 Ig_Titin_like Immunogl 99.4 1.2E-12 2.6E-17 93.3 9.5 72 291-362 1-74 (74)
58 cd05864 Ig2_VEGFR-2 Second imm 99.4 7.7E-13 1.7E-17 92.1 8.2 68 292-362 1-68 (70)
59 cd05744 Ig_Myotilin_C_like Imm 99.4 9E-13 2E-17 93.8 8.5 71 292-362 1-75 (75)
60 cd05853 Ig6_Contactin-4 Sixth 99.4 9.6E-13 2.1E-17 94.8 8.5 77 290-366 1-85 (85)
61 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.8E-12 3.9E-17 95.8 10.2 78 283-362 12-90 (91)
62 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.5E-12 3.1E-17 92.4 8.8 69 293-361 2-77 (79)
63 cd05746 Ig4_Peroxidasin Fourth 99.4 8.8E-13 1.9E-17 92.3 7.5 68 292-360 1-68 (69)
64 cd05747 Ig5_Titin_like M5, fif 99.4 1.9E-12 4E-17 96.5 9.5 79 91-171 3-89 (92)
65 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.4E-12 5.3E-17 89.7 9.5 68 289-360 1-68 (69)
66 cd05865 Ig1_NCAM-1 First immun 99.4 3.6E-12 7.7E-17 95.0 10.8 83 93-175 2-95 (96)
67 cd05760 Ig2_PTK7 Second immuno 99.4 2.2E-12 4.8E-17 92.4 9.0 73 292-364 1-76 (77)
68 cd05763 Ig_1 Subgroup of the i 99.4 2.2E-12 4.7E-17 92.1 8.8 71 292-362 1-74 (75)
69 cd05737 Ig_Myomesin_like_C C-t 99.4 3.1E-12 6.7E-17 95.3 10.0 82 188-270 8-92 (92)
70 cd05725 Ig3_Robo Third immunog 99.4 1.6E-12 3.5E-17 91.1 7.9 69 292-362 1-69 (69)
71 cd05726 Ig4_Robo Fhird immunog 99.4 3E-12 6.5E-17 95.0 9.8 78 289-366 1-85 (90)
72 cd05730 Ig3_NCAM-1_like Third 99.4 4.6E-12 1E-16 95.2 10.7 82 190-272 12-94 (95)
73 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.6E-11 3.4E-16 99.4 14.6 116 141-260 2-132 (139)
74 cd05764 Ig_2 Subgroup of the i 99.4 2E-12 4.3E-17 92.2 8.3 73 289-362 1-74 (74)
75 cd05731 Ig3_L1-CAM_like Third 99.4 1.9E-12 4.2E-17 91.5 8.1 71 292-363 1-71 (71)
76 cd05866 Ig1_NCAM-2 First immun 99.4 3.2E-12 7E-17 94.2 9.3 79 93-172 2-88 (92)
77 cd05848 Ig1_Contactin-5 First 99.4 4.7E-12 1E-16 94.4 10.1 73 288-360 18-92 (94)
78 cd05743 Ig_Perlecan_D2_like Im 99.4 3.4E-12 7.3E-17 91.8 9.0 74 289-362 1-76 (78)
79 cd04973 Ig1_FGFR First immunog 99.4 3.9E-12 8.6E-17 91.6 9.2 77 283-362 3-79 (79)
80 cd05724 Ig2_Robo Second immuno 99.4 4.8E-12 1E-16 93.3 9.8 80 283-362 5-86 (86)
81 cd05728 Ig4_Contactin-2-like F 99.4 2.8E-12 6.1E-17 93.9 8.3 78 95-174 3-84 (85)
82 cd05740 Ig_CEACAM_D4 Fourth im 99.4 5.9E-12 1.3E-16 93.1 9.9 77 98-175 10-90 (91)
83 cd04974 Ig3_FGFR Third immunog 99.4 2.3E-12 5E-17 95.4 7.7 75 289-363 1-90 (90)
84 cd07693 Ig1_Robo First immunog 99.4 6E-12 1.3E-16 95.8 10.3 88 274-362 2-99 (100)
85 cd05850 Ig1_Contactin-2 First 99.4 7.6E-12 1.7E-16 93.4 10.3 73 288-360 18-92 (94)
86 cd05892 Ig_Myotilin_C C-termin 99.4 3.5E-12 7.6E-17 90.2 8.0 71 199-270 1-75 (75)
87 cd05867 Ig4_L1-CAM_like Fourth 99.4 6.7E-12 1.4E-16 89.8 9.6 74 196-270 1-75 (76)
88 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 5.5E-12 1.2E-16 90.8 9.0 69 293-361 2-79 (81)
89 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 9.8E-12 2.1E-16 90.9 10.3 80 190-270 4-86 (86)
90 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 5.3E-12 1.2E-16 89.7 8.6 72 292-363 1-74 (74)
91 cd05866 Ig1_NCAM-2 First immun 99.3 8E-12 1.7E-16 92.1 9.5 79 283-362 9-91 (92)
92 cd05723 Ig4_Neogenin Fourth im 99.3 7.8E-12 1.7E-16 88.0 8.9 71 198-270 1-71 (71)
93 cd04969 Ig5_Contactin_like Fif 99.3 5.7E-12 1.2E-16 89.4 8.2 73 196-270 1-73 (73)
94 cd04972 Ig_TrkABC_d4 Fourth do 99.3 9.6E-12 2.1E-16 92.3 9.7 84 186-270 5-90 (90)
95 PF07679 I-set: Immunoglobulin 99.3 3.9E-12 8.5E-17 94.7 7.5 82 92-175 1-90 (90)
96 cd04977 Ig1_NCAM-1_like First 99.3 1E-11 2.2E-16 92.3 9.2 80 93-173 2-90 (92)
97 cd05749 Ig2_Tyro3_like Second 99.3 1.7E-11 3.7E-16 88.0 10.0 73 282-360 6-80 (81)
98 cd05854 Ig6_Contactin-2 Sixth 99.3 1.4E-11 2.9E-16 90.0 9.6 77 197-274 1-85 (85)
99 cd05893 Ig_Palladin_C C-termin 99.3 8.2E-12 1.8E-16 88.5 8.0 71 199-270 1-75 (75)
100 cd05735 Ig8_DSCAM Eight immuno 99.3 2.1E-11 4.6E-16 89.6 10.5 79 196-275 1-86 (88)
101 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.7E-11 3.7E-16 92.3 10.1 82 91-174 2-96 (97)
102 cd04973 Ig1_FGFR First immunog 99.3 1.7E-11 3.7E-16 88.2 9.7 72 98-172 1-76 (79)
103 cd05853 Ig6_Contactin-4 Sixth 99.3 1.3E-11 2.8E-16 88.9 8.9 78 197-274 1-85 (85)
104 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1.8E-11 3.9E-16 92.4 10.2 82 91-174 2-97 (98)
105 cd07702 Ig2_VEGFR-1 Second imm 99.3 1E-11 2.2E-16 86.6 7.9 70 292-362 1-70 (72)
106 cd05859 Ig4_PDGFR-alpha Fourth 99.3 1.3E-11 2.9E-16 92.9 9.2 81 190-271 12-100 (101)
107 cd05863 Ig2_VEGFR-3 Second imm 99.3 9.1E-12 2E-16 85.5 7.4 66 199-271 1-66 (67)
108 cd05868 Ig4_NrCAM Fourth immun 99.3 1.3E-11 2.8E-16 88.1 8.6 75 196-271 1-76 (76)
109 cd05858 Ig3_FGFR-2 Third immun 99.3 1E-11 2.2E-16 92.1 8.2 74 289-362 1-89 (90)
110 cd05724 Ig2_Robo Second immuno 99.3 1.7E-11 3.8E-16 90.3 9.5 76 97-173 2-84 (86)
111 cd05857 Ig2_FGFR Second immuno 99.3 2.2E-11 4.7E-16 89.5 9.9 79 191-270 4-85 (85)
112 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.1E-11 4.6E-16 87.4 9.4 74 196-270 1-75 (76)
113 cd05736 Ig2_Follistatin_like S 99.3 1.8E-11 3.9E-16 87.7 8.9 73 292-364 1-75 (76)
114 cd05749 Ig2_Tyro3_like Second 99.3 1.8E-11 3.9E-16 87.8 8.7 74 95-171 2-78 (81)
115 cd05850 Ig1_Contactin-2 First 99.3 3.8E-11 8.3E-16 89.6 10.8 81 92-173 2-92 (94)
116 cd05722 Ig1_Neogenin First imm 99.3 2.6E-11 5.6E-16 91.0 10.0 80 283-362 8-95 (95)
117 cd05756 Ig1_IL1R_like First im 99.3 1.3E-11 2.8E-16 91.7 8.2 80 283-362 8-94 (94)
118 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 3.8E-11 8.3E-16 87.4 10.4 75 289-363 1-83 (84)
119 cd05765 Ig_3 Subgroup of the i 99.3 1.7E-11 3.8E-16 89.1 8.6 74 289-362 1-81 (81)
120 cd05742 Ig1_VEGFR_like First i 99.3 2.4E-11 5.2E-16 88.8 9.2 75 289-363 1-84 (84)
121 cd05891 Ig_M-protein_C C-termi 99.3 2.8E-11 6.1E-16 89.9 9.6 82 188-270 8-92 (92)
122 cd05732 Ig5_NCAM-1_like Fifth 99.3 3.1E-11 6.8E-16 90.9 9.9 81 91-174 2-95 (96)
123 cd05849 Ig1_Contactin-1 First 99.3 4.8E-11 1.1E-15 88.6 10.7 80 92-172 2-90 (93)
124 cd05750 Ig_Pro_neuregulin Immu 99.3 1.8E-11 4E-16 87.5 8.1 68 292-359 1-74 (75)
125 cd05848 Ig1_Contactin-5 First 99.3 3.9E-11 8.4E-16 89.5 10.0 76 92-168 2-87 (94)
126 cd07693 Ig1_Robo First immunog 99.3 3.6E-11 7.7E-16 91.5 9.9 84 91-175 1-99 (100)
127 cd05856 Ig2_FGFRL1-like Second 99.3 2.8E-11 6.1E-16 88.3 8.9 78 192-270 5-82 (82)
128 cd04977 Ig1_NCAM-1_like First 99.3 4.7E-11 1E-15 88.7 10.1 79 283-362 9-92 (92)
129 cd05758 Ig5_KIRREL3-like Fifth 99.3 4.4E-11 9.5E-16 90.3 10.1 78 283-360 10-97 (98)
130 cd05752 Ig1_FcgammaR_like Frst 99.3 1.8E-11 3.9E-16 87.3 7.5 66 92-162 1-68 (78)
131 cd05876 Ig3_L1-CAM Third immun 99.3 3.3E-11 7.2E-16 84.8 8.7 70 199-270 1-70 (71)
132 cd05744 Ig_Myotilin_C_like Imm 99.3 3.2E-11 6.9E-16 85.7 8.5 71 199-270 1-75 (75)
133 cd05746 Ig4_Peroxidasin Fourth 99.3 1.9E-11 4.1E-16 85.5 7.0 68 199-268 1-68 (69)
134 cd04970 Ig6_Contactin_like Six 99.3 3.1E-11 6.8E-16 88.5 8.4 77 197-274 1-85 (85)
135 cd05849 Ig1_Contactin-1 First 99.3 5E-11 1.1E-15 88.5 9.4 71 289-360 19-91 (93)
136 cd05864 Ig2_VEGFR-2 Second imm 99.3 2.2E-11 4.9E-16 84.7 7.1 66 109-176 1-69 (70)
137 cd05726 Ig4_Robo Fhird immunog 99.2 7.7E-11 1.7E-15 87.4 10.3 76 196-273 1-84 (90)
138 cd05722 Ig1_Neogenin First imm 99.2 6.3E-11 1.4E-15 88.9 9.9 80 94-174 2-94 (95)
139 cd05763 Ig_1 Subgroup of the i 99.2 7.1E-11 1.5E-15 84.3 9.4 71 199-270 1-74 (75)
140 cd04976 Ig2_VEGFR Second immun 99.2 3.6E-11 7.8E-16 84.5 7.7 70 199-271 1-70 (71)
141 cd05773 Ig8_hNephrin_like Eigh 99.2 1.2E-10 2.5E-15 89.5 11.1 95 179-274 3-108 (109)
142 cd05725 Ig3_Robo Third immunog 99.2 7.5E-11 1.6E-15 82.6 9.1 69 199-270 1-69 (69)
143 cd05756 Ig1_IL1R_like First im 99.2 8.2E-11 1.8E-15 87.4 9.6 80 190-270 8-94 (94)
144 cd05748 Ig_Titin_like Immunogl 99.2 6.8E-11 1.5E-15 84.1 8.9 72 198-270 1-74 (74)
145 cd05764 Ig_2 Subgroup of the i 99.2 8.9E-11 1.9E-15 83.6 9.4 73 196-270 1-74 (74)
146 cd05754 Ig3_Perlecan_like Thir 99.2 1.1E-10 2.3E-15 85.6 9.9 79 278-360 5-84 (85)
147 cd05734 Ig7_DSCAM Seventh immu 99.2 5.6E-11 1.2E-15 85.8 8.1 71 292-362 1-79 (79)
148 cd05733 Ig6_L1-CAM_like Sixth 99.2 4.8E-11 1E-15 85.4 7.4 65 292-356 1-71 (77)
149 cd05875 Ig6_hNeurofascin_like 99.2 7.9E-11 1.7E-15 84.1 8.5 66 292-357 1-72 (77)
150 cd05743 Ig_Perlecan_D2_like Im 99.2 8E-11 1.7E-15 84.6 8.4 73 196-269 1-75 (78)
151 cd05752 Ig1_FcgammaR_like Frst 99.2 4.7E-11 1E-15 85.1 7.1 66 275-350 2-68 (78)
152 cd05874 Ig6_NrCAM Sixth immuno 99.2 8.3E-11 1.8E-15 84.0 8.2 65 292-356 1-71 (77)
153 cd05760 Ig2_PTK7 Second immuno 99.2 8.9E-11 1.9E-15 84.0 8.3 72 199-271 1-75 (77)
154 cd05753 Ig2_FcgammaR_like Seco 99.2 1.1E-10 2.3E-15 84.7 8.5 74 94-169 2-77 (83)
155 cd04967 Ig1_Contactin First Ig 99.2 1.9E-10 4E-15 85.5 9.6 69 288-356 18-87 (91)
156 cd05729 Ig2_FGFR_like Second i 99.2 2.3E-10 5.1E-15 84.0 9.6 79 284-362 4-85 (85)
157 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 1.2E-10 2.6E-15 82.7 7.5 66 109-175 1-73 (74)
158 cd05731 Ig3_L1-CAM_like Third 99.2 1.2E-10 2.7E-15 82.1 7.5 70 199-270 1-70 (71)
159 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 2.1E-10 4.6E-15 79.8 8.4 68 196-268 1-68 (69)
160 cd05754 Ig3_Perlecan_like Thir 99.2 3.2E-10 6.9E-15 83.1 9.7 73 98-172 8-83 (85)
161 cd05895 Ig_Pro_neuregulin-1 Im 99.1 1.9E-10 4.1E-15 82.3 8.0 68 292-359 1-75 (76)
162 cd05873 Ig_Sema4D_like Immunog 99.1 2.6E-10 5.6E-15 82.5 8.5 66 97-163 2-71 (87)
163 cd05855 Ig_TrkB_d5 Fifth domai 99.1 2.2E-10 4.9E-15 81.3 7.8 68 201-269 3-77 (79)
164 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 3.2E-10 6.9E-15 81.6 8.6 70 200-270 2-80 (81)
165 cd05898 Ig5_KIRREL3 Fifth immu 99.1 6.9E-10 1.5E-14 82.2 10.5 79 282-360 9-97 (98)
166 cd05882 Ig1_Necl-1 First (N-te 99.1 6.7E-10 1.4E-14 82.5 9.5 79 282-361 5-94 (95)
167 cd07702 Ig2_VEGFR-1 Second imm 99.1 3.2E-10 7E-15 79.0 7.3 69 199-269 1-69 (72)
168 cd05858 Ig3_FGFR-2 Third immun 99.1 6.3E-10 1.4E-14 82.4 8.9 74 196-270 1-89 (90)
169 cd04974 Ig3_FGFR Third immunog 99.1 6E-10 1.3E-14 82.5 8.7 74 196-270 1-89 (90)
170 cd05757 Ig2_IL1R_like Second i 99.1 5.5E-10 1.2E-14 82.4 8.1 77 284-362 5-86 (92)
171 cd05862 Ig1_VEGFR First immuno 99.1 1E-09 2.2E-14 80.2 9.4 75 289-363 1-85 (86)
172 cd05736 Ig2_Follistatin_like S 99.1 8E-10 1.7E-14 79.1 8.6 72 199-271 1-74 (76)
173 cd04979 Ig_Semaphorin_C Immuno 99.1 1E-09 2.2E-14 81.2 9.3 78 97-175 2-86 (89)
174 cd05758 Ig5_KIRREL3-like Fifth 99.1 2.3E-09 4.9E-14 80.9 10.7 79 189-268 9-97 (98)
175 cd05765 Ig_3 Subgroup of the i 99.1 1.5E-09 3.3E-14 78.8 9.4 74 196-270 1-81 (81)
176 cd05727 Ig2_Contactin-2-like S 99.0 1.1E-09 2.3E-14 80.5 8.2 74 189-262 11-86 (96)
177 cd05750 Ig_Pro_neuregulin Immu 99.0 1.1E-09 2.3E-14 78.2 8.1 69 199-267 1-74 (75)
178 cd04979 Ig_Semaphorin_C Immuno 99.0 3E-09 6.6E-14 78.6 10.5 80 190-271 5-87 (89)
179 cd05734 Ig7_DSCAM Seventh immu 99.0 1.6E-09 3.4E-14 78.1 8.4 70 199-270 1-79 (79)
180 cd04967 Ig1_Contactin First Ig 99.0 1.6E-09 3.4E-14 80.5 8.6 73 92-165 2-84 (91)
181 cd05882 Ig1_Necl-1 First (N-te 99.0 1.2E-09 2.7E-14 81.0 7.9 64 99-162 5-84 (95)
182 cd05757 Ig2_IL1R_like Second i 99.0 1.8E-09 3.9E-14 79.6 8.7 77 191-269 5-85 (92)
183 cd05742 Ig1_VEGFR_like First i 99.0 2.2E-09 4.7E-14 78.4 8.9 74 196-270 1-83 (84)
184 cd05727 Ig2_Contactin-2-like S 99.0 1.2E-09 2.5E-14 80.3 7.3 66 99-165 11-85 (96)
185 cd05733 Ig6_L1-CAM_like Sixth 99.0 1.9E-09 4E-14 77.2 8.1 64 199-263 1-70 (77)
186 cd05895 Ig_Pro_neuregulin-1 Im 99.0 2.1E-09 4.6E-14 76.8 8.3 69 199-267 1-75 (76)
187 cd07701 Ig1_Necl-3 First (N-te 99.0 2.9E-09 6.3E-14 79.4 9.1 75 98-174 4-94 (95)
188 cd05874 Ig6_NrCAM Sixth immuno 99.0 3.3E-09 7.1E-14 75.7 9.0 65 199-264 1-71 (77)
189 cd05873 Ig_Sema4D_like Immunog 99.0 4.3E-09 9.4E-14 76.2 9.6 67 190-259 5-71 (87)
190 cd05875 Ig6_hNeurofascin_like 99.0 4.1E-09 8.9E-14 75.2 9.3 64 199-263 1-70 (77)
191 cd07701 Ig1_Necl-3 First (N-te 99.0 4.6E-09 1E-13 78.3 9.8 80 282-362 5-95 (95)
192 smart00408 IGc2 Immunoglobulin 99.0 2.1E-09 4.6E-14 73.6 7.6 63 288-352 1-63 (63)
193 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 5.7E-09 1.2E-13 75.9 10.0 75 196-271 1-83 (84)
194 cd05753 Ig2_FcgammaR_like Seco 99.0 2.4E-09 5.2E-14 77.6 7.8 64 192-261 10-73 (83)
195 cd05729 Ig2_FGFR_like Second i 99.0 7.4E-09 1.6E-13 75.9 10.0 78 192-270 5-85 (85)
196 cd05871 Ig_Semaphorin_classIII 98.9 7.8E-09 1.7E-13 76.2 9.6 64 100-163 5-76 (91)
197 cd05860 Ig4_SCFR Fourth immuno 98.9 1.3E-08 2.7E-13 74.8 10.5 81 283-363 12-100 (101)
198 cd05845 Ig2_L1-CAM_like Second 98.9 3.3E-09 7.1E-14 77.8 7.3 74 281-354 10-85 (95)
199 cd05751 Ig1_LILRB1_like First 98.9 9.9E-09 2.2E-13 76.0 8.9 70 91-162 2-75 (91)
200 cd05871 Ig_Semaphorin_classIII 98.9 1.3E-08 2.9E-13 75.0 9.4 80 284-364 6-90 (91)
201 PF13895 Ig_2: Immunoglobulin 98.9 4.5E-09 9.7E-14 76.1 6.7 76 92-173 2-78 (80)
202 cd05885 Ig2_Necl-4 Second immu 98.9 1.1E-08 2.3E-13 72.4 7.9 63 292-354 2-69 (80)
203 PF13895 Ig_2: Immunoglobulin 98.9 7.1E-09 1.5E-13 75.0 7.3 71 284-362 9-80 (80)
204 cd05885 Ig2_Necl-4 Second immu 98.9 1.6E-08 3.4E-13 71.5 8.7 64 198-261 1-68 (80)
205 cd05845 Ig2_L1-CAM_like Second 98.9 1.8E-08 3.8E-13 73.9 8.5 73 188-261 10-84 (95)
206 PF00047 ig: Immunoglobulin do 98.9 6.2E-09 1.3E-13 71.6 5.8 59 289-347 1-64 (64)
207 cd05898 Ig5_KIRREL3 Fifth immu 98.8 6.5E-08 1.4E-12 71.7 11.4 82 186-268 6-97 (98)
208 cd05774 Ig_CEACAM_D1 First imm 98.8 3.1E-08 6.7E-13 74.7 9.7 72 94-165 1-95 (105)
209 cd07690 Ig1_CD4 First immunogl 98.8 1.6E-08 3.4E-13 74.6 7.5 71 284-354 2-91 (94)
210 cd05897 Ig2_IL1R2_like Second 98.8 1.5E-08 3.2E-13 74.6 7.3 79 284-362 5-93 (95)
211 smart00408 IGc2 Immunoglobulin 98.8 2.5E-08 5.3E-13 68.2 8.0 63 195-260 1-63 (63)
212 smart00409 IG Immunoglobulin. 98.8 7.7E-08 1.7E-12 70.3 11.0 80 283-362 3-85 (86)
213 smart00410 IG_like Immunoglobu 98.8 7.7E-08 1.7E-12 70.3 11.0 80 283-362 3-85 (86)
214 cd05717 Ig1_Necl-1-3_like Firs 98.8 5.6E-08 1.2E-12 72.8 9.9 79 283-362 6-95 (95)
215 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 7E-08 1.5E-12 71.1 9.9 80 191-270 10-104 (104)
216 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 4.7E-08 1E-12 72.0 8.9 73 100-173 9-102 (104)
217 cd05717 Ig1_Necl-1-3_like Firs 98.8 6.9E-08 1.5E-12 72.3 9.6 65 99-163 5-85 (95)
218 PF00047 ig: Immunoglobulin do 98.8 2.3E-08 5.1E-13 68.7 6.2 60 196-255 1-64 (64)
219 cd05897 Ig2_IL1R2_like Second 98.7 6.2E-08 1.4E-12 71.3 8.4 65 100-165 4-80 (95)
220 cd05862 Ig1_VEGFR First immuno 98.7 7.2E-08 1.6E-12 70.4 8.7 76 196-271 1-85 (86)
221 cd05751 Ig1_LILRB1_like First 98.7 6.7E-08 1.4E-12 71.5 8.3 73 274-350 3-75 (91)
222 cd05872 Ig_Sema4B_like Immunog 98.7 9.1E-08 2E-12 68.7 8.3 75 99-176 4-81 (85)
223 PHA03376 BARF1; Provisional 98.7 1.2E-07 2.7E-12 76.2 9.5 118 100-222 20-164 (221)
224 smart00409 IG Immunoglobulin. 98.7 4.6E-07 9.9E-12 66.1 11.4 80 190-270 3-85 (86)
225 smart00410 IG_like Immunoglobu 98.7 4.6E-07 9.9E-12 66.1 11.4 80 190-270 3-85 (86)
226 PHA03376 BARF1; Provisional 98.6 8.3E-07 1.8E-11 71.5 12.6 119 284-449 21-161 (221)
227 cd05759 Ig2_KIRREL3-like Secon 98.6 1.6E-07 3.5E-12 68.1 8.1 71 291-361 1-81 (82)
228 PHA03270 envelope glycoprotein 98.6 7.2E-05 1.6E-09 68.5 26.2 258 39-316 79-362 (466)
229 cd05860 Ig4_SCFR Fourth immuno 98.6 6.2E-07 1.4E-11 66.0 10.7 81 190-271 12-100 (101)
230 cd07690 Ig1_CD4 First immunogl 98.6 1.4E-07 3E-12 69.6 7.3 68 192-260 3-89 (94)
231 cd05881 Ig1_Necl-2 First (N-te 98.6 4.4E-07 9.5E-12 66.9 9.3 64 99-162 5-84 (95)
232 PF13927 Ig_3: Immunoglobulin 98.6 4.6E-08 9.9E-13 69.7 3.7 73 274-349 2-75 (75)
233 cd04983 IgV_TCR_alpha_like Imm 98.6 3.8E-07 8.3E-12 70.3 9.0 68 96-163 3-93 (109)
234 cd05899 IgV_TCR_beta Immunoglo 98.6 5E-07 1.1E-11 69.7 9.1 67 95-162 2-94 (110)
235 cd05872 Ig_Sema4B_like Immunog 98.6 6.8E-07 1.5E-11 64.2 9.0 64 190-257 5-68 (85)
236 cd04980 IgV_L_kappa Immunoglob 98.5 5.3E-07 1.2E-11 69.0 8.4 69 94-162 3-93 (106)
237 cd05883 Ig2_Necl-2 Second immu 98.5 9.8E-07 2.1E-11 62.6 8.7 73 292-364 2-81 (82)
238 cd05881 Ig1_Necl-2 First (N-te 98.5 2.1E-06 4.6E-11 63.3 10.5 68 189-257 5-83 (95)
239 cd05900 Ig_Aggrecan Immunoglob 98.5 1.4E-06 3.1E-11 66.6 9.8 77 288-364 1-110 (112)
240 cd05883 Ig2_Necl-2 Second immu 98.5 1.4E-06 3E-11 61.9 8.8 74 199-272 2-81 (82)
241 cd07694 Ig2_CD4 Second immunog 98.5 2.1E-06 4.5E-11 60.7 9.5 68 94-162 3-73 (88)
242 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.1E-06 2.3E-11 65.4 8.4 69 92-161 2-76 (94)
243 cd05879 Ig_P0 Immunoglobulin ( 98.5 1.1E-06 2.3E-11 67.8 8.6 77 98-175 5-114 (116)
244 cd05741 Ig_CEACAM_D1_like Firs 98.5 1.1E-06 2.3E-11 65.5 8.4 60 106-165 1-82 (92)
245 cd05759 Ig2_KIRREL3-like Secon 98.5 9.4E-07 2E-11 64.0 7.7 71 199-269 2-81 (82)
246 PF13927 Ig_3: Immunoglobulin 98.4 1E-07 2.2E-12 67.8 2.4 69 91-161 1-75 (75)
247 cd05877 Ig_LP_like Immunoglobu 98.4 2.2E-06 4.7E-11 65.6 9.6 77 288-364 1-104 (106)
248 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2E-06 4.4E-11 65.8 9.3 77 288-364 1-104 (106)
249 cd05774 Ig_CEACAM_D1 First imm 98.4 3.7E-06 8.1E-11 63.4 10.1 76 192-269 9-104 (105)
250 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.6E-06 3.4E-11 67.2 8.3 68 98-165 5-104 (115)
251 cd05711 Ig_FcalphaRI Immunoglo 98.4 3.2E-06 6.9E-11 62.8 9.0 72 274-348 2-75 (94)
252 cd05715 Ig_P0-like Immunoglobu 98.4 2.6E-06 5.6E-11 66.3 8.8 68 98-165 5-105 (116)
253 PHA03273 envelope glycoprotein 98.4 6E-05 1.3E-09 69.7 18.5 196 140-349 198-421 (486)
254 cd05900 Ig_Aggrecan Immunoglob 98.4 4.5E-06 9.8E-11 63.8 9.7 77 195-271 1-109 (112)
255 cd05713 Ig_MOG_like Immunoglob 98.4 4.2E-06 9E-11 63.3 9.4 74 289-362 1-99 (100)
256 cd05714 Ig_CSPGs_LP Immunoglob 98.3 3.3E-06 7.2E-11 64.6 8.9 71 105-176 1-103 (106)
257 cd04984 IgV_L_lambda Immunoglo 98.3 2.3E-06 5.1E-11 64.4 7.8 60 102-161 2-84 (98)
258 cd05877 Ig_LP_like Immunoglobu 98.3 4.9E-06 1.1E-10 63.7 9.7 77 195-271 1-103 (106)
259 PHA03271 envelope glycoprotein 98.3 0.0003 6.6E-09 64.0 21.9 197 140-349 207-430 (490)
260 cd00099 IgV Immunoglobulin var 98.3 2E-06 4.2E-11 65.8 7.1 63 102-164 2-91 (105)
261 cd05775 Ig_SLAM-CD84_like_N N- 98.3 1.7E-06 3.7E-11 64.8 6.6 72 104-175 2-96 (97)
262 PHA03269 envelope glycoprotein 98.3 6.8E-05 1.5E-09 69.5 17.9 198 140-349 289-512 (566)
263 cd05846 Ig1_MRC-OX-2_like Firs 98.3 3.9E-06 8.5E-11 62.9 8.4 70 106-175 1-96 (97)
264 PF07686 V-set: Immunoglobulin 98.3 2E-06 4.3E-11 66.9 7.1 70 93-162 3-101 (114)
265 cd04983 IgV_TCR_alpha_like Imm 98.3 4.5E-06 9.8E-11 64.3 9.0 71 282-352 6-94 (109)
266 cd05741 Ig_CEACAM_D1_like Firs 98.3 2.8E-06 6E-11 63.2 7.6 73 289-361 1-91 (92)
267 cd05878 Ig_Aggrecan_like Immun 98.3 9.2E-06 2E-10 62.3 9.7 77 288-364 1-108 (110)
268 cd05755 Ig2_ICAM-1_like Second 98.3 5E-06 1.1E-10 61.7 7.5 73 92-165 2-87 (100)
269 cd05899 IgV_TCR_beta Immunoglo 98.2 8.4E-06 1.8E-10 62.8 8.9 70 282-352 6-96 (110)
270 cd05718 Ig1_PVR_like First imm 98.2 9.3E-06 2E-10 61.1 9.0 74 197-270 1-97 (98)
271 cd05718 Ig1_PVR_like First imm 98.2 1.1E-05 2.3E-10 60.8 9.3 73 290-362 1-97 (98)
272 cd04982 IgV_TCR_gamma Immunogl 98.2 4.8E-06 1E-10 64.9 7.4 66 96-161 3-98 (116)
273 cd05713 Ig_MOG_like Immunoglob 98.2 1.2E-05 2.7E-10 60.7 9.4 75 196-270 1-99 (100)
274 cd07706 IgV_TCR_delta Immunogl 98.2 9.2E-06 2E-10 63.3 8.8 69 94-162 2-94 (116)
275 cd05755 Ig2_ICAM-1_like Second 98.2 8.4E-06 1.8E-10 60.5 8.0 70 285-354 12-88 (100)
276 cd05761 Ig2_Necl-1-4_like Seco 98.2 8.6E-06 1.9E-10 58.8 7.8 63 292-354 2-71 (82)
277 cd07705 Ig2_Necl-1 Second immu 98.2 1.1E-05 2.4E-10 58.2 8.3 63 292-354 2-72 (83)
278 cd05887 Ig1_Nectin-3_like Firs 98.2 1.4E-05 3.1E-10 59.0 8.9 68 107-175 1-95 (96)
279 cd00098 IgC Immunoglobulin Con 98.2 7E-06 1.5E-10 61.4 7.3 67 287-353 11-87 (95)
280 cd05775 Ig_SLAM-CD84_like_N N- 98.2 5.2E-06 1.1E-10 62.2 6.5 76 195-270 3-96 (97)
281 cd05879 Ig_P0 Immunoglobulin ( 98.2 1.9E-05 4.2E-10 60.9 9.6 72 283-354 7-106 (116)
282 cd00099 IgV Immunoglobulin var 98.2 6.8E-06 1.5E-10 62.8 7.2 68 285-352 2-91 (105)
283 cd05887 Ig1_Nectin-3_like Firs 98.2 2.1E-05 4.5E-10 58.2 9.3 74 197-270 1-95 (96)
284 cd05878 Ig_Aggrecan_like Immun 98.2 2.2E-05 4.7E-10 60.2 9.7 77 196-272 2-108 (110)
285 cd05772 IgC_SIRP Signal-regula 98.2 2.2E-05 4.8E-10 59.9 9.4 84 271-354 3-95 (111)
286 cd05886 Ig1_Nectin-1_like Firs 98.1 3.3E-05 7.2E-10 57.6 10.1 37 326-362 61-98 (99)
287 cd05886 Ig1_Nectin-1_like Firs 98.1 2E-05 4.4E-10 58.8 8.8 37 138-175 61-98 (99)
288 cd07694 Ig2_CD4 Second immunog 98.1 3E-05 6.5E-10 55.0 9.0 75 285-363 10-86 (88)
289 PHA02987 Ig domain OX-2-like p 98.1 2.2E-05 4.8E-10 64.0 9.1 78 100-177 24-123 (189)
290 cd05888 Ig1_Nectin-4_like Frst 98.1 2.1E-05 4.6E-10 59.2 8.4 36 139-175 63-99 (100)
291 cd07699 IgC_L Immunoglobulin C 98.1 8.8E-06 1.9E-10 61.1 6.3 81 274-354 2-92 (100)
292 cd05880 Ig_EVA1 Immunoglobulin 98.1 4.1E-05 8.9E-10 59.3 10.2 72 282-353 6-104 (115)
293 cd04980 IgV_L_kappa Immunoglob 98.1 1.6E-05 3.6E-10 60.7 7.8 68 283-350 9-93 (106)
294 cd07700 IgV_CD8_beta Immunoglo 98.1 1.7E-05 3.7E-10 60.6 7.8 60 102-161 2-93 (107)
295 cd07705 Ig2_Necl-1 Second immu 98.1 3.8E-05 8.3E-10 55.4 8.6 63 199-261 2-71 (83)
296 cd05884 Ig2_Necl-3 Second immu 98.0 1.9E-05 4E-10 57.0 6.9 62 292-353 2-71 (83)
297 cd05761 Ig2_Necl-1-4_like Seco 98.0 3.3E-05 7.2E-10 55.7 8.2 63 199-261 2-70 (82)
298 cd05846 Ig1_MRC-OX-2_like Firs 98.0 3.9E-05 8.4E-10 57.5 8.7 74 289-362 1-96 (97)
299 cd05888 Ig1_Nectin-4_like Frst 98.0 5.3E-05 1.2E-09 57.0 9.3 72 291-362 2-99 (100)
300 cd05712 Ig_Siglec_N Immunoglob 98.0 2.7E-05 5.8E-10 60.9 7.9 65 98-162 6-102 (119)
301 PHA02987 Ig domain OX-2-like p 98.0 5.2E-05 1.1E-09 61.9 9.6 83 284-366 25-125 (189)
302 cd04982 IgV_TCR_gamma Immunogl 98.0 3.5E-05 7.6E-10 60.0 8.3 67 283-349 7-98 (116)
303 cd05715 Ig_P0-like Immunoglobu 98.0 6.9E-05 1.5E-09 58.3 9.9 72 189-260 6-104 (116)
304 cd04984 IgV_L_lambda Immunoglo 98.0 2.5E-05 5.4E-10 58.7 7.2 66 285-350 2-85 (98)
305 cd05902 Ig_Neurocan Immunoglob 98.0 5.3E-05 1.1E-09 57.7 8.8 77 288-364 1-108 (110)
306 cd05889 Ig1_DNAM-1_like First 98.0 6.9E-05 1.5E-09 55.4 9.0 57 107-163 1-83 (96)
307 cd05716 Ig_pIgR Immunoglobulin 98.0 3.6E-05 7.8E-10 57.9 7.5 63 101-163 2-87 (98)
308 TIGR00864 PCC polycystin catio 97.9 0.03 6.5E-07 64.1 31.6 279 102-453 1796-2085(2740)
309 cd05901 Ig_Versican Immunoglob 97.9 0.00015 3.3E-09 55.3 10.0 39 326-364 77-115 (117)
310 cd05847 IgC_CH2_IgE CH2 domain 97.9 5.5E-05 1.2E-09 55.9 7.4 69 288-356 13-91 (94)
311 PF07686 V-set: Immunoglobulin 97.9 3.9E-05 8.5E-10 59.4 7.1 81 282-362 9-114 (114)
312 cd05901 Ig_Versican Immunoglob 97.9 0.00013 2.8E-09 55.7 9.5 38 138-176 77-114 (117)
313 cd05884 Ig2_Necl-3 Second immu 97.9 6.6E-05 1.4E-09 54.1 7.4 62 199-260 2-70 (83)
314 cd05902 Ig_Neurocan Immunoglob 97.9 0.0001 2.2E-09 56.1 8.7 76 196-271 2-107 (110)
315 cd05769 IgC_TCR_beta T cell re 97.9 5.9E-05 1.3E-09 57.8 7.3 84 274-357 3-98 (115)
316 cd05768 IgC_CH4 CH4 domain (fo 97.9 4.5E-05 9.9E-10 57.4 6.6 69 286-354 13-94 (102)
317 cd05716 Ig_pIgR Immunoglobulin 97.9 0.00013 2.8E-09 54.9 9.1 68 192-259 3-87 (98)
318 cd04981 IgV_H Immunoglobulin ( 97.9 7.5E-05 1.6E-09 58.0 7.8 65 97-161 3-97 (117)
319 TIGR00864 PCC polycystin catio 97.8 0.11 2.4E-06 59.8 34.9 277 95-449 1701-1990(2740)
320 PHA03269 envelope glycoprotein 97.8 0.002 4.4E-08 60.1 17.0 78 237-317 290-373 (566)
321 cd05889 Ig1_DNAM-1_like First 97.8 0.00026 5.6E-09 52.4 9.4 71 197-267 1-92 (96)
322 smart00407 IGc1 Immunoglobulin 97.8 0.00014 3.1E-09 51.3 7.8 61 292-352 2-72 (75)
323 cd05772 IgC_SIRP Signal-regula 97.8 0.00017 3.7E-09 55.1 8.5 69 192-260 17-93 (111)
324 cd00096 Ig Immunoglobulin doma 97.8 0.00013 2.8E-09 50.5 7.5 61 292-352 1-67 (74)
325 PHA03270 envelope glycoprotein 97.8 0.0025 5.3E-08 58.7 17.1 77 237-316 183-264 (466)
326 cd05766 IgC_MHC_II_beta Class 97.8 0.00044 9.5E-09 51.2 10.1 66 286-354 11-86 (94)
327 PHA03273 envelope glycoprotein 97.7 0.0026 5.6E-08 59.2 16.7 114 237-353 199-327 (486)
328 cd05767 IgC_MHC_II_alpha Class 97.7 0.00053 1.2E-08 50.6 10.0 63 287-352 13-85 (94)
329 cd07699 IgC_L Immunoglobulin C 97.7 6E-05 1.3E-09 56.6 4.9 80 181-260 2-90 (100)
330 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00051 1.1E-08 50.9 9.9 65 289-353 14-85 (93)
331 cd05720 Ig_CD8_alpha Immunoglo 97.7 7.8E-05 1.7E-09 56.6 5.6 59 102-160 2-89 (104)
332 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.00039 8.4E-09 51.2 8.9 75 185-260 5-85 (97)
333 cd00098 IgC Immunoglobulin Con 97.7 7.1E-05 1.5E-09 55.9 5.3 68 194-261 11-87 (95)
334 PHA02914 Immunoglobulin-like d 97.7 0.039 8.4E-07 50.5 26.0 82 283-364 273-382 (500)
335 PF08205 C2-set_2: CD80-like C 97.7 0.00025 5.5E-09 52.1 7.8 66 289-354 14-87 (89)
336 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.00036 7.8E-09 51.3 8.2 75 278-352 5-85 (97)
337 PHA03271 envelope glycoprotein 97.7 0.011 2.4E-07 54.2 19.0 115 237-354 208-338 (490)
338 cd07706 IgV_TCR_delta Immunogl 97.6 0.00027 5.8E-09 55.0 7.7 70 189-258 7-94 (116)
339 cd07697 IgC_TCR_gamma T cell r 97.6 0.00028 6E-09 52.2 7.3 64 286-351 13-85 (96)
340 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00019 4.2E-09 54.8 6.8 65 285-349 2-93 (107)
341 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00021 4.5E-09 52.9 6.3 78 274-352 4-90 (99)
342 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00024 5.2E-09 52.7 6.6 70 285-354 10-89 (96)
343 cd05770 IgC_beta2m Class I maj 97.6 0.0012 2.6E-08 48.5 10.2 66 287-353 13-85 (93)
344 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00023 4.9E-09 54.0 6.2 65 285-349 2-90 (104)
345 KOG1480|consensus 97.5 3.5E-05 7.7E-10 75.3 1.4 179 90-271 23-219 (909)
346 cd05712 Ig_Siglec_N Immunoglob 97.5 0.00073 1.6E-08 52.7 8.6 71 188-258 6-102 (119)
347 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00094 2E-08 49.5 8.5 64 288-352 15-88 (95)
348 cd05769 IgC_TCR_beta T cell re 97.5 0.0004 8.8E-09 53.2 6.8 83 181-263 3-96 (115)
349 smart00407 IGc1 Immunoglobulin 97.4 0.00074 1.6E-08 47.7 6.8 61 199-259 2-71 (75)
350 cd00096 Ig Immunoglobulin doma 97.4 0.00084 1.8E-08 46.2 7.2 60 199-259 1-66 (74)
351 PF08205 C2-set_2: CD80-like C 97.4 0.00029 6.3E-09 51.8 4.5 72 93-165 2-86 (89)
352 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.00069 1.5E-08 50.0 6.3 68 195-262 13-89 (94)
353 PF07654 C1-set: Immunoglobuli 97.3 0.00097 2.1E-08 48.2 7.0 65 287-354 6-80 (83)
354 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0028 6.1E-08 46.9 9.1 65 196-260 14-84 (93)
355 cd05719 Ig2_PVR_like Second im 97.3 0.0017 3.6E-08 48.1 7.8 69 289-357 15-88 (95)
356 cd05719 Ig2_PVR_like Second im 97.3 0.0016 3.4E-08 48.2 7.6 60 106-165 15-84 (95)
357 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.00098 2.1E-08 50.2 6.5 68 193-260 13-92 (102)
358 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0012 2.6E-08 48.7 6.8 72 290-361 16-92 (95)
359 cd05766 IgC_MHC_II_beta Class 97.3 0.0032 7E-08 46.5 9.1 65 194-261 12-85 (94)
360 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0018 4E-08 47.7 6.8 59 107-165 16-84 (95)
361 cd07692 Ig_CD3_epsilon Immunog 97.1 0.0016 3.6E-08 43.3 5.6 52 103-161 4-55 (65)
362 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0019 4E-08 43.3 5.8 49 289-349 6-54 (69)
363 cd07692 Ig_CD3_epsilon Immunog 97.1 0.00092 2E-08 44.5 4.0 52 287-350 5-56 (65)
364 cd04986 IgC_CH2 CH2 domain (se 97.0 0.0022 4.8E-08 47.5 6.2 80 181-260 4-90 (99)
365 cd04981 IgV_H Immunoglobulin ( 97.0 0.0038 8.1E-08 48.5 7.8 68 190-257 6-97 (117)
366 cd05767 IgC_MHC_II_alpha Class 97.0 0.007 1.5E-07 44.6 8.6 62 195-259 14-84 (94)
367 cd07696 IgC_CH3 CH3 domain (th 97.0 0.0046 1E-07 45.9 7.7 69 192-260 10-87 (96)
368 cd07697 IgC_TCR_gamma T cell r 97.0 0.0033 7.1E-08 46.5 6.8 66 192-259 12-85 (96)
369 smart00406 IGv Immunoglobulin 97.0 0.0021 4.5E-08 46.0 5.5 57 291-347 1-81 (81)
370 smart00406 IGv Immunoglobulin 96.9 0.0012 2.7E-08 47.3 4.2 20 140-159 62-81 (81)
371 PHA02633 hypothetical protein; 96.9 0.0023 5.1E-08 41.7 4.8 38 138-176 16-53 (63)
372 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0058 1.3E-07 44.7 7.1 66 285-351 11-86 (99)
373 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0044 9.5E-08 41.6 5.8 61 195-272 5-65 (69)
374 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.0053 1.2E-07 46.4 6.7 64 96-159 3-93 (115)
375 KOG0613|consensus 96.7 0.025 5.5E-07 59.6 12.8 176 238-455 280-482 (1205)
376 PHA02633 hypothetical protein; 96.7 0.0082 1.8E-07 39.2 5.9 41 326-366 16-56 (63)
377 cd04985 IgC_CH1 CH1 domain (fi 96.7 0.012 2.6E-07 43.6 7.6 64 195-259 15-87 (95)
378 cd05770 IgC_beta2m Class I maj 96.7 0.009 2E-07 43.9 6.9 71 91-163 1-83 (93)
379 KOG0613|consensus 96.6 0.0089 1.9E-07 62.9 9.0 251 99-352 237-517 (1205)
380 cd07689 Ig2_VCAM-1 Second immu 96.6 0.01 2.3E-07 43.4 6.9 65 193-258 12-85 (99)
381 PHA02982 hypothetical protein; 96.4 0.021 4.7E-07 47.3 7.9 112 100-221 33-172 (251)
382 PF07654 C1-set: Immunoglobuli 96.2 0.016 3.5E-07 41.7 5.9 64 195-261 7-79 (83)
383 KOG1480|consensus 96.2 0.0033 7.2E-08 62.1 2.7 79 98-177 136-220 (909)
384 cd05721 IgV_CTLA-4 Immunoglobu 96.0 0.047 1E-06 41.4 7.6 64 284-347 8-93 (115)
385 PF08204 V-set_CD47: CD47 immu 95.5 0.013 2.8E-07 45.5 3.0 80 285-365 23-122 (130)
386 PHA02982 hypothetical protein; 95.5 0.16 3.4E-06 42.4 9.1 116 192-313 35-172 (251)
387 PF07354 Sp38: Zona-pellucida- 95.3 0.03 6.4E-07 48.6 4.8 46 118-163 11-60 (271)
388 KOG4597|consensus 95.1 0.031 6.7E-07 52.3 4.5 82 284-365 206-294 (560)
389 PF08204 V-set_CD47: CD47 immu 94.9 0.023 5.1E-07 44.1 2.9 75 195-270 26-119 (130)
390 PHA03283 envelope glycoprotein 94.5 2.7 5.8E-05 40.7 15.7 82 138-220 132-235 (542)
391 PHA03282 envelope glycoprotein 94.2 2.7 5.9E-05 39.9 14.6 26 138-163 122-147 (540)
392 PF07354 Sp38: Zona-pellucida- 94.1 0.11 2.3E-06 45.2 5.3 50 302-351 11-60 (271)
393 PHA03052 Hypothetical protein; 93.0 0.21 4.4E-06 33.3 4.0 38 420-457 5-45 (69)
394 PF11465 Receptor_2B4: Natural 92.8 0.76 1.7E-05 34.1 7.2 38 138-175 69-106 (108)
395 KOG4597|consensus 92.7 0.17 3.7E-06 47.6 4.6 79 97-176 202-292 (560)
396 PHA03286 envelope glycoprotein 92.7 8.7 0.00019 36.5 15.4 82 138-219 125-226 (492)
397 PHA03281 envelope glycoprotein 92.2 12 0.00026 36.5 21.1 82 138-219 296-395 (642)
398 PHA03042 CD47-like protein; Pr 92.1 0.59 1.3E-05 40.9 6.8 58 106-164 31-94 (286)
399 PHA03042 CD47-like protein; Pr 91.3 1 2.2E-05 39.6 7.3 73 286-363 28-105 (286)
400 PF06328 Lep_receptor_Ig: Ig-l 90.7 1 2.2E-05 32.8 5.9 63 96-159 8-81 (89)
401 PF02480 Herpes_gE: Alphaherpe 90.7 0.53 1.1E-05 45.6 5.8 83 138-220 87-191 (439)
402 PF11465 Receptor_2B4: Natural 90.6 0.63 1.4E-05 34.5 4.7 41 323-363 66-107 (108)
403 PHA02865 MHC-like TNF binding 90.5 1.5 3.2E-05 40.3 8.1 21 291-311 216-238 (338)
404 PF06328 Lep_receptor_Ig: Ig-l 90.5 1.1 2.4E-05 32.5 6.0 66 191-256 13-82 (89)
405 PF05790 C2-set: Immunoglobuli 90.5 2.4 5.2E-05 30.1 7.5 37 326-362 41-78 (80)
406 cd05890 Ig2_Nectin-1_like Seco 89.4 1.4 3E-05 32.0 5.5 72 291-362 22-98 (98)
407 PF03921 ICAM_N: Intercellular 89.2 2 4.4E-05 31.2 6.4 82 92-176 4-86 (91)
408 KOG1026|consensus 88.9 0.99 2.1E-05 46.2 6.2 159 192-366 203-366 (774)
409 PHA02914 Immunoglobulin-like d 88.6 21 0.00047 33.4 14.4 158 190-354 273-470 (500)
410 PHA03282 envelope glycoprotein 86.3 29 0.00063 33.4 13.5 37 235-271 123-161 (540)
411 PF05790 C2-set: Immunoglobuli 84.9 12 0.00025 26.6 8.2 51 212-270 27-78 (80)
412 cd05890 Ig2_Nectin-1_like Seco 84.0 3.6 7.9E-05 29.9 5.2 71 198-269 22-97 (98)
413 PHA02865 MHC-like TNF binding 83.7 3.8 8.2E-05 37.8 6.6 22 198-219 216-238 (338)
414 PHA03240 envelope glycoprotein 83.6 1.5 3.3E-05 36.7 3.7 58 100-157 32-122 (258)
415 PHA03283 envelope glycoprotein 81.1 34 0.00074 33.5 12.0 41 326-366 132-172 (542)
416 PF02010 REJ: REJ domain; Int 79.9 2.4 5.1E-05 41.7 4.4 256 108-366 2-301 (440)
417 PF03921 ICAM_N: Intercellular 79.7 19 0.00041 26.2 7.8 77 190-275 12-90 (91)
418 PF02124 Marek_A: Marek's dise 78.8 41 0.0009 28.8 14.4 129 212-349 7-159 (211)
419 PF02124 Marek_A: Marek's dise 76.8 48 0.001 28.5 13.0 126 120-256 7-158 (211)
420 PHA03189 UL14 tegument protein 76.0 14 0.00031 33.1 7.3 68 98-165 59-158 (348)
421 PF06832 BiPBP_C: Penicillin-B 75.7 5.5 0.00012 28.9 4.2 42 411-453 9-54 (89)
422 KOG0200|consensus 72.5 83 0.0018 32.5 13.3 110 138-257 11-138 (609)
423 KOG1026|consensus 71.5 11 0.00024 38.9 6.5 155 100-272 201-364 (774)
424 PHA03286 envelope glycoprotein 67.5 1.1E+02 0.0023 29.6 11.3 39 326-364 125-164 (492)
425 PHA03052 Hypothetical protein; 67.5 17 0.00037 24.5 4.5 34 98-132 4-41 (69)
426 PF02440 Adeno_E3_CR1: Adenovi 67.2 15 0.00032 24.6 4.3 21 103-126 2-22 (63)
427 PF02440 Adeno_E3_CR1: Adenovi 63.8 34 0.00075 22.9 5.5 21 193-218 2-22 (63)
428 PHA03281 envelope glycoprotein 59.2 1.8E+02 0.0039 28.9 11.4 41 326-366 296-337 (642)
429 PHA03112 IL-18 binding protein 56.1 48 0.001 26.3 6.0 72 286-357 35-125 (141)
430 PHA03240 envelope glycoprotein 55.6 28 0.0006 29.5 4.9 62 192-254 34-123 (258)
431 PHA03112 IL-18 binding protein 54.9 63 0.0014 25.7 6.4 26 103-128 35-63 (141)
432 KOG0200|consensus 52.7 1.1E+02 0.0023 31.7 9.8 120 235-361 12-150 (609)
433 PF15096 G6B: G6B family 52.5 32 0.00068 28.4 4.6 65 104-175 9-105 (224)
434 PF02010 REJ: REJ domain; Int 48.2 16 0.00034 35.9 3.0 163 198-364 2-187 (440)
435 PF02480 Herpes_gE: Alphaherpe 45.8 19 0.00041 35.1 3.0 41 326-366 87-128 (439)
436 PHA03189 UL14 tegument protein 42.7 2.2E+02 0.0047 26.0 8.6 26 334-359 139-165 (348)
437 PRK14081 triple tyrosine motif 37.5 5E+02 0.011 27.1 28.4 287 103-453 203-525 (667)
438 PF01688 Herpes_gI: Alphaherpe 35.9 1.7E+02 0.0037 24.0 6.5 28 138-165 122-149 (161)
439 PF06832 BiPBP_C: Penicillin-B 32.2 1.9E+02 0.0041 20.7 9.1 53 106-165 31-83 (89)
440 PF11141 DUF2914: Protein of u 31.6 1.7E+02 0.0036 19.8 6.6 58 305-362 8-65 (66)
441 smart00089 PKD Repeats in poly 30.1 1.9E+02 0.004 19.9 7.8 63 288-362 13-78 (79)
442 PF11049 KSHV_K1: Glycoprotein 29.8 1.8E+02 0.0039 19.6 4.6 43 200-256 2-44 (71)
443 PRK14081 triple tyrosine motif 26.0 7.8E+02 0.017 25.7 29.1 280 103-446 302-611 (667)
444 PF03174 CHB_HEX_C: Chitobiase 23.3 2.6E+02 0.0055 19.2 5.8 62 97-165 6-67 (75)
445 PF01688 Herpes_gI: Alphaherpe 21.2 2.5E+02 0.0055 23.0 5.1 38 325-362 121-158 (161)
446 KOG3611|consensus 20.8 1.6E+02 0.0035 31.0 4.8 56 108-163 571-635 (737)
No 1
>KOG3513|consensus
Probab=100.00 E-value=5.4e-49 Score=388.38 Aligned_cols=409 Identities=27% Similarity=0.440 Sum_probs=336.9
Q ss_pred ccccCcCCCCCeeeecccccccccccccccceeeeccceEEEEecCcEEEEEEee--eCCccEEEeccchhhh-------
Q psy17058 8 GIKPTSSNQGNALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTY--YAPGRWMWLNFYSFLS------- 78 (471)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~--~~~~~~~w~~~~~~~~------- 78 (471)
-.+.|.+++-|.+|++.|+...+++ +.++.|.......+.|.+|+.+.|.|..+ .+..++.|........
T Consensus 108 d~G~YqC~AsN~~Gta~S~~~~l~~-~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r 186 (1051)
T KOG3513|consen 108 DQGIYQCFASNKLGTAVSREARLQF-GFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRR 186 (1051)
T ss_pred hcceeEEEeecccceeeccceeecc-cccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcce
Confidence 4678999999999999999999999 99999999999999999999999999987 4566888876433211
Q ss_pred -------------------heeeeeeee----------------------cCCCCcEEEc-CCceeecCCCcEEEEee-C
Q psy17058 79 -------------------LIIICLAYL----------------------SPQANEVQVT-PRQQSAPEGSQVTIECK-S 115 (471)
Q Consensus 79 -------------------~~~~c~~~~----------------------~~~~~~v~~~-p~~~~v~~G~~v~l~C~-~ 115 (471)
..|.|.+.. ...+|.+.+. |.......|+.+.|.|- .
T Consensus 187 ~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~ 266 (1051)
T KOG3513|consen 187 VFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFAL 266 (1051)
T ss_pred eEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEec
Confidence 125777652 1234555444 44677889999999999 9
Q ss_pred CCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCcee
Q psy17058 116 NDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQT 192 (471)
Q Consensus 116 ~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~ 192 (471)
|+|.|++.|.|.++..++.+.. .+.+|.|.+++.+|+|.|+|.|.|..|. ......+.| ..+|.....+ .+..
T Consensus 267 G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v--~a~P~w~~~~-~d~~ 342 (1051)
T KOG3513|consen 267 GNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTV--YAPPYWLQKP-QDTE 342 (1051)
T ss_pred CCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEE--ecCchhhccc-ceeE
Confidence 9999999999998877776554 6789999999999999999999999986 554444444 4778776654 4567
Q ss_pred EEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 193 v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
+..|+.++|.|.+ .+.|.++|+|++|+..+....+ ....-..+.|.|.+++..|+|.|.|.|+|..|....++.|.|.
T Consensus 343 ~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~ 421 (1051)
T KOG3513|consen 343 ADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL 421 (1051)
T ss_pred ecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence 8899999999999 8999999999999998765544 1122236889999999999999999999999999999999999
Q ss_pred eC-CceeeCCCcc-EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058 272 TL-PAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349 (471)
Q Consensus 272 ~~-p~~~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 349 (471)
.. |.+...+... ..+..|..+.|.|...+.|.|.++|.++++.+... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 422 a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~-~r~~i~edGtL~I~n~t~~DaG~YtC~A~N 500 (1051)
T KOG3513|consen 422 ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS-GRIRILEDGTLEISNVTRSDAGKYTCVAEN 500 (1051)
T ss_pred ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC-ceEEECCCCcEEecccCcccCcEEEEEEEc
Confidence 75 7777666554 37788999999999999999999999998844333 234566789999999999999999999999
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCe
Q psy17058 350 SAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDI 429 (471)
Q Consensus 350 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~ 429 (471)
..|....+..|.|++. ++|+..|.+..+..|+.
T Consensus 501 ~~G~a~~~~~L~Vkd~-----------------------------------------------tri~~~P~~~~v~~g~~ 533 (1051)
T KOG3513|consen 501 KLGKAESTGNLIVKDA-----------------------------------------------TRITLAPSNTDVKVGES 533 (1051)
T ss_pred ccCccceEEEEEEecC-----------------------------------------------ceEEeccchhhhccCce
Confidence 9999999999999985 79999998999999999
Q ss_pred EEEEEEecccCC--ceEEEecCCCCCCCce-----EEe----cCeEEECCCC
Q psy17058 430 ANIRCSAIGATP--ISIRWQPLQGYFPSHV-----VEY----NGELRLGPHK 470 (471)
Q Consensus 430 ~~l~C~~~g~p~--~~v~W~~~g~~l~~~~-----~~~----~~~l~i~~~~ 470 (471)
+.|.|++...|. +.+.|.+||+++.... ... .+.|+|+++.
T Consensus 534 v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~ 585 (1051)
T KOG3513|consen 534 VTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVS 585 (1051)
T ss_pred EEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeec
Confidence 999999987766 5789999999875332 112 2558888763
No 2
>KOG3513|consensus
Probab=100.00 E-value=7.6e-42 Score=337.93 Aligned_cols=386 Identities=23% Similarity=0.376 Sum_probs=305.8
Q ss_pred cceeeeccceEEEEecCc--EEEEEEee-eCCccEEEeccchhhh-------------------------heeeeeeeec
Q psy17058 37 TQFVSAENHEVTVYEGGD--AELKCNTY-YAPGRWMWLNFYSFLS-------------------------LIIICLAYLS 88 (471)
Q Consensus 37 ~~~~~~~~~~~~v~~g~~--~~l~C~~~-~~~~~~~w~~~~~~~~-------------------------~~~~c~~~~~ 88 (471)
|.|.......+...+-++ ++|.|++. +|.+.+.|.+++..+. ..|.|+|...
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN~ 119 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASNK 119 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeecc
Confidence 455555554554444444 99999999 6778999998765332 2478998732
Q ss_pred -----CCC--------CcEE-EcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--c----cCcEEEEcC
Q psy17058 89 -----PQA--------NEVQ-VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM--I----AGETLIING 146 (471)
Q Consensus 89 -----~~~--------~~v~-~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--~----~~~~L~i~~ 146 (471)
..+ +.+. -....+.+.+|+.+.|.|. .+.|.+.+.|..+....+.... . ..+.|.+.+
T Consensus 120 ~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~ 199 (1051)
T KOG3513|consen 120 LGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSN 199 (1051)
T ss_pred cceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEee
Confidence 111 1121 2346788999999999999 7788899999988544433221 1 678999999
Q ss_pred CCCCCCeEEEEEEEecCCce--eeeeEEEEEe-----eccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeC
Q psy17058 147 ITKADEGVYICSIQNAQGNV--FQDYASIQVD-----KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP 219 (471)
Q Consensus 147 v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~-----~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~ 219 (471)
+..+|.+.|.|.+.+..... ......|.+. ...+|.+....+.......|+.+.|.|.+ .|+|-|.+.|.|.
T Consensus 200 V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~ 278 (1051)
T KOG3513|consen 200 VETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKV 278 (1051)
T ss_pred cchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeC
Confidence 99999999999998743331 2223334431 23456666666656677899999999999 8999999999999
Q ss_pred CCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT 299 (471)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~ 299 (471)
++. +...+......+.+|.|.+++.+|+|.|.|.|.|..|.......|.|..+|.+...+ .+..+..|++++|.|.+.
T Consensus 279 ~g~-~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~-~d~~~~~gs~v~~eC~a~ 356 (1051)
T KOG3513|consen 279 DGK-PPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP-QDTEADTGSNVTLECKAS 356 (1051)
T ss_pred CCC-CCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccc-ceeEecCCCCeEEEEEec
Confidence 986 566666666668899999999999999999999999999999999999999988765 467888999999999999
Q ss_pred ecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCc
Q psy17058 300 GRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378 (471)
Q Consensus 300 g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~ 378 (471)
|.|.|+++|++||.++....+ ....-..+.|.|.+++..|+|.|+|.|+|..|...+++.|.|...
T Consensus 357 g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~------------- 423 (1051)
T KOG3513|consen 357 GKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS------------- 423 (1051)
T ss_pred CCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc-------------
Confidence 999999999999999874322 112345679999999999999999999999999999999999986
Q ss_pred cccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCe--eeeeCCCeEEEEEEecccCCceEEEecCCCCCCCc
Q psy17058 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR--QTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH 456 (471)
Q Consensus 379 ~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~ 456 (471)
+|.|...+.. ..+..|..+.|.|...+.|.|.++|.|+|+.+..+
T Consensus 424 ---------------------------------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~ 470 (1051)
T KOG3513|consen 424 ---------------------------------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS 470 (1051)
T ss_pred ---------------------------------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC
Confidence 4677666666 46778999999999999999999999999977777
Q ss_pred eEE---ecCeEEECCCCC
Q psy17058 457 VVE---YNGELRLGPHKH 471 (471)
Q Consensus 457 ~~~---~~~~l~i~~~~~ 471 (471)
.++ .+|+|.|.+++|
T Consensus 471 ~r~~i~edGtL~I~n~t~ 488 (1051)
T KOG3513|consen 471 GRIRILEDGTLEISNVTR 488 (1051)
T ss_pred ceEEECCCCcEEecccCc
Confidence 666 789999999885
No 3
>KOG4222|consensus
Probab=100.00 E-value=4.1e-36 Score=294.17 Aligned_cols=389 Identities=28% Similarity=0.447 Sum_probs=310.6
Q ss_pred ccccceeeeccceEEEEecCcEEEEEEeee-CCccEEEeccchh-hh------------------------------hee
Q psy17058 34 GEVTQFVSAENHEVTVYEGGDAELKCNTYY-APGRWMWLNFYSF-LS------------------------------LII 81 (471)
Q Consensus 34 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~~w~~~~~~-~~------------------------------~~~ 81 (471)
.++++.++-.++++.|..|+.++|.|.+.. +++.++|++.+.. +. ..|
T Consensus 28 qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 28 QDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred ccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 456778888899999999999999999995 5889999997731 11 125
Q ss_pred eeeeee--------------cCCCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCC--CCc----ccC
Q psy17058 82 ICLAYL--------------SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP--PNM----IAG 139 (471)
Q Consensus 82 ~c~~~~--------------~~~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~--~~~----~~~ 139 (471)
.|.+.. ...+-.+.+.|.++.+..|+.++|+|. .++|.+.+.|.|+ +..+. ... ..+
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~~lisg 186 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPIIALISG 186 (1281)
T ss_pred EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeEEEecC
Confidence 666642 123455667788889999999999999 8999999999999 55554 111 178
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeC
Q psy17058 140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP 219 (471)
Q Consensus 140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~ 219 (471)
+.|.|.++...|.|.|.|.+.|..|...+..+.+.|+ ++|.+...+ ....+..|..+.+.|.+ .+.|.+.+.|.++
T Consensus 187 G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--e~P~f~~rp-~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~ 262 (1281)
T KOG4222|consen 187 GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--EKPWFWKRP-KDLAVLVGAAAEFDCRV-GGDPQPTVRWKKD 262 (1281)
T ss_pred CcEEEeccccCCCceeeeeecccccccccccceeeec--cCCcccccc-ccceeeccccccccccc-CCCCCCceeeecc
Confidence 8999999999999999999999999877777778776 667766555 45678899999999999 9999999999997
Q ss_pred CCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEe
Q psy17058 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT 299 (471)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~ 299 (471)
+..++ ..++.+..+..+|.|.+++..|.|.|.|.+.|..|.......+.|+.+|.+...+. ...+..|..++|.|++.
T Consensus 263 ~~~~P-~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~-dq~v~lg~~vt~pc~~~ 340 (1281)
T KOG4222|consen 263 DPSLP-RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPR-DQKVALGGTVTFPCETL 340 (1281)
T ss_pred CCCCC-ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccC-ccccccCceEEeeeecC
Confidence 77644 45566666568999999999999999999999999999999999999999988775 45778899999999999
Q ss_pred ecCCCeEEEEeCCccCC-------CcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCC
Q psy17058 300 GRPMPTVSWVKYIAPFD-------RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372 (471)
Q Consensus 300 g~p~~~i~W~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 372 (471)
|+|.|.+.|.+.+...- ....+.......+|+|.+++..|.|.|.|...+..|.......+.+...-...
T Consensus 341 gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~--- 417 (1281)
T KOG4222|consen 341 GNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDS--- 417 (1281)
T ss_pred CCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccC---
Confidence 99999999999875421 11112233445599999999999999999999888877655555544321110
Q ss_pred CCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCC
Q psy17058 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGY 452 (471)
Q Consensus 373 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~ 452 (471)
..+|.|...+.+++..++..+.|.|.+.|.|.+.+.|+++|-.
T Consensus 418 -------------------------------------rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~ 460 (1281)
T KOG4222|consen 418 -------------------------------------RPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCN 460 (1281)
T ss_pred -------------------------------------CCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccc
Confidence 1268888999999999999999999999999999999999876
Q ss_pred CCCceE----EecCeEEECCC
Q psy17058 453 FPSHVV----EYNGELRLGPH 469 (471)
Q Consensus 453 l~~~~~----~~~~~l~i~~~ 469 (471)
+..... ...++|+|..+
T Consensus 461 v~~~d~~~s~~~~~~l~i~dl 481 (1281)
T KOG4222|consen 461 VMNPDSRISQQEIGSLRIRDL 481 (1281)
T ss_pred cccCCcccceeeeceeeeeee
Confidence 643322 25577777654
No 4
>KOG4221|consensus
Probab=100.00 E-value=1.5e-34 Score=284.86 Aligned_cols=427 Identities=21% Similarity=0.323 Sum_probs=308.6
Q ss_pred cceeeeccceEEEEecCcEEEEEEeeeC---CccEEEeccchhhhh------------------------------eeee
Q psy17058 37 TQFVSAENHEVTVYEGGDAELKCNTYYA---PGRWMWLNFYSFLSL------------------------------IIIC 83 (471)
Q Consensus 37 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~~~w~~~~~~~~~------------------------------~~~c 83 (471)
+-.+..++++. .+|..+.|.|.+... ..++.|.+++..+.. .|+|
T Consensus 41 ~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc 118 (1381)
T KOG4221|consen 41 PLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQC 118 (1381)
T ss_pred cceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEE
Confidence 33455555544 899999999998743 458999987665442 3678
Q ss_pred eeee--------------cCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEE
Q psy17058 84 LAYL--------------SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLII 144 (471)
Q Consensus 84 ~~~~--------------~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i 144 (471)
.+.. ....+.+...+.+.++..|+++.|.|. .+.+.+.+.|.++ ..+++.... .++.|.|
T Consensus 119 ~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn-~~pl~~~~r~i~lpsG~L~I 197 (1381)
T KOG4221|consen 119 LATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKN-DQPLPLDSRVIVLPSGALEI 197 (1381)
T ss_pred EEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecc-cccccCCCcEEEcCCCcEEe
Confidence 8753 245667777888999999999999999 7788889999999 544443223 7889999
Q ss_pred cCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccC---CeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCC
Q psy17058 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221 (471)
Q Consensus 145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~ 221 (471)
.+++..|.|.|+|.+.+......+..+.++|..... -..++..+....+.+|+++.|.|.+ .+.|.+.|.|.||+.
T Consensus 198 ~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~ 276 (1381)
T KOG4221|consen 198 SGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGE 276 (1381)
T ss_pred cccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCe
Confidence 999999999999999998777667777888762110 1123444556678899999999999 899999999999998
Q ss_pred CCCcCCCceEEe-eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee
Q psy17058 222 DGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300 (471)
Q Consensus 222 ~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g 300 (471)
.+.... .++.. ..+.|.|.+++..|+|.|+|+|+|........+.|.|..+|.+.-.|. ...+.++.++.|.|.+.|
T Consensus 277 ~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~-~l~A~e~~die~ec~~~g 354 (1381)
T KOG4221|consen 277 KISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPT-TLVAHESMDIEFECPVSG 354 (1381)
T ss_pred eeeecc-eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCc-ceeeeeccceeEeCCCCC
Confidence 877665 33333 267899999999999999999999777778888999999998877664 567778999999999999
Q ss_pred cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCC--CCCCCCc
Q psy17058 301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI--SPRPGAD 378 (471)
Q Consensus 301 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~ 378 (471)
.|.+++.|+|+|..+............. |.|..+-..|.|.|.|.+.|..|.......|.+...|.++.. .+....+
T Consensus 355 ~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~ 433 (1381)
T KOG4221|consen 355 KPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRD 433 (1381)
T ss_pred CCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcc
Confidence 9999999999998876533322333333 999999999999999999999999999998877766533221 1111111
Q ss_pred c--ccCCC-----cccCCCCCCC--------------------------c--eEEEcCCcceEEe------------eec
Q psy17058 379 I--LPDGD-----EYYRPEPEEG--------------------------E--YVYAVGSNASISC------------SVE 411 (471)
Q Consensus 379 ~--~~~~~-----~w~~~~~~~~--------------------------~--~~~~~~~~~~y~c------------~~~ 411 (471)
. ...+. +|..|...++ + .+.++.....|.| ...
T Consensus 434 lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~ 513 (1381)
T KOG4221|consen 434 LVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSA 513 (1381)
T ss_pred eecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCC
Confidence 1 11111 5543332111 1 6667777777888 112
Q ss_pred CCeeEEcCCe-eeeeCCCeEEEEEEecccCCc----eEEEecCCCCCCCce---EE--ecCeEEECCCC
Q psy17058 412 PPRITLRPVR-QTVKPGDIANIRCSAIGATPI----SIRWQPLQGYFPSHV---VE--YNGELRLGPHK 470 (471)
Q Consensus 412 ~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~----~v~W~~~g~~l~~~~---~~--~~~~l~i~~~~ 470 (471)
+-++...++. .....+..--++|.+...|++ .|+|||.+....+.. ++ +..+++|+++.
T Consensus 514 pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~ 582 (1381)
T KOG4221|consen 514 PLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLE 582 (1381)
T ss_pred ceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCC
Confidence 2223222221 225567777899999999888 999999765544221 22 34567777664
No 5
>KOG4221|consensus
Probab=100.00 E-value=2.4e-33 Score=276.46 Aligned_cols=325 Identities=25% Similarity=0.432 Sum_probs=253.1
Q ss_pred CCCCcEEEcCCceeecCCCcEEEEee-C--CCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCCC-----CCCeE
Q psy17058 89 PQANEVQVTPRQQSAPEGSQVTIECK-S--NDPSATIKWSKDNQEQLPPNMI------AGETLIINGITK-----ADEGV 154 (471)
Q Consensus 89 ~~~~~v~~~p~~~~v~~G~~v~l~C~-~--~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~~-----~D~G~ 154 (471)
..+..|.++|.+. .+|..+.|.|. . ....+.+.|.++ |..+..... .+++|.|.++.. .|.|.
T Consensus 39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkD-g~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~ 115 (1381)
T KOG4221|consen 39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKD-GSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGV 115 (1381)
T ss_pred cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccC-chhhhhhhhhHHhhccCCceeEeeecccccccccCce
Confidence 3567788888854 89999999999 2 224678999988 666544321 788999999887 88999
Q ss_pred EEEEEEec-CCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe
Q psy17058 155 YICSIQNA-QGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ 233 (471)
Q Consensus 155 Y~C~~~~~-~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 233 (471)
|+|.|+-. .+...+..+.|.+. ..+.+...+. +..+..|+++.|.|.+ .+.|-+.+.|.+++..++...++.. .
T Consensus 116 Yqc~atv~~~gsi~Sr~a~v~~a--~~~~f~~~~~-~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~r~i~-l 190 (1381)
T KOG4221|consen 116 YQCLATVEDVGSILSRTAKVALA--GLADFALQPE-STTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDSRVIV-L 190 (1381)
T ss_pred EEEEEEccccceeecceEEEEec--ccCccccCcc-ceeEecCCcEEEEEEE-cCccCceeEEecccccccCCCcEEE-c
Confidence 99999876 44434444445443 4555555544 4578899999999999 6688889999999998888875544 4
Q ss_pred eeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCc-----eeeCCCccEEecCCCcEEEEEEEeecCCCeEE
Q psy17058 234 ELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPA-----VTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307 (471)
Q Consensus 234 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~-----~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~ 307 (471)
-++.|.|.+++..|.|.|.|.+++.... .+..+.|+|...|. .++..+....+.+|+++.|.|.+.|.|.|.|.
T Consensus 191 psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~ 270 (1381)
T KOG4221|consen 191 PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVK 270 (1381)
T ss_pred CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceE
Confidence 4889999999999999999999987654 45667788873332 12333345678899999999999999999999
Q ss_pred EEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCccc
Q psy17058 308 WVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387 (471)
Q Consensus 308 W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~ 387 (471)
|.+++..+............+.|.|.+++.+|+|.|+|+|.|..-...+...|.|..+
T Consensus 271 Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~---------------------- 328 (1381)
T KOG4221|consen 271 WLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP---------------------- 328 (1381)
T ss_pred EeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC----------------------
Confidence 9999998876555455667889999999999999999999996666677777878764
Q ss_pred CCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCCCCCceEE---ecCeE
Q psy17058 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVE---YNGEL 464 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~l 464 (471)
|.|+..|......++.++.|.|.+.|.|.|.+.|+|||..+..+..+ .++.|
T Consensus 329 -------------------------P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~l 383 (1381)
T KOG4221|consen 329 -------------------------PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNL 383 (1381)
T ss_pred -------------------------CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCc
Confidence 67777788888888999999999999999999999999777555433 23336
Q ss_pred EECC
Q psy17058 465 RLGP 468 (471)
Q Consensus 465 ~i~~ 468 (471)
+|..
T Consensus 384 rIlg 387 (1381)
T KOG4221|consen 384 RILG 387 (1381)
T ss_pred EEEE
Confidence 6653
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.8e-31 Score=261.82 Aligned_cols=332 Identities=27% Similarity=0.452 Sum_probs=264.0
Q ss_pred ecCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCCC-----CCCCeE
Q psy17058 87 LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGIT-----KADEGV 154 (471)
Q Consensus 87 ~~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v~-----~~D~G~ 154 (471)
....+|.+...|.++.+..|+.++|.|. .+.|.++++|||++......... ..+.|.+..+- ..|.|.
T Consensus 27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~ 106 (1281)
T KOG4222|consen 27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGV 106 (1281)
T ss_pred cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCce
Confidence 3467899999999999999999999999 99999999999994333332211 34444444321 239999
Q ss_pred EEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEE
Q psy17058 155 YICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVY 232 (471)
Q Consensus 155 Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~ 232 (471)
|.|.+.|..+...+..+.+.+.+. ...+.+.+.. ..+..|+.+.|.|.-..+.|.+.+.|.|+|+.+.. ...+.+.
T Consensus 107 y~cvasn~~g~avSr~a~L~vavl-rddfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li 184 (1281)
T KOG4222|consen 107 YSCVASNRLGEAVSRGASLIVAVL-RDDFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI 184 (1281)
T ss_pred eEeeecCccceeeecCceEEEEEe-chhcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe
Confidence 999999999887777778887653 2334444443 56778999999998888999999999999998663 2333334
Q ss_pred eeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeC
Q psy17058 233 QELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY 311 (471)
Q Consensus 233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~ 311 (471)
. ++.|.|.++...|.|.|.|.++|..|. .+..++|.|+++|.+...+. ...+..|..+.+.|.+.|.|.|++.|.++
T Consensus 185 s-gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~-~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~ 262 (1281)
T KOG4222|consen 185 S-GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPK-DLAVLVGAAAEFDCRVGGDPQPTVRWKKD 262 (1281)
T ss_pred c-CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccc-cceeecccccccccccCCCCCCceeeecc
Confidence 4 889999999999999999999999887 46678999999998877764 56788899999999999999999999998
Q ss_pred CccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCC
Q psy17058 312 IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391 (471)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~ 391 (471)
+..+..... .....+.+|.|..++..|.|.|.|.+.|..|.......++|+.+
T Consensus 263 ~~~~P~~ry-~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-------------------------- 315 (1281)
T KOG4222|consen 263 DPSLPRSRY-SILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-------------------------- 315 (1281)
T ss_pred CCCCCccce-eeeeccccccccccCCCcccceeeeccccccccccccceEEecC--------------------------
Confidence 877764432 23445578999999999999999999999999999999999885
Q ss_pred CCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEecccCCceEEEecCCCC-C-------CCceEE---e
Q psy17058 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGY-F-------PSHVVE---Y 460 (471)
Q Consensus 392 ~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~-l-------~~~~~~---~ 460 (471)
|.|...+.+..+..|..+.|.|.+.|+|+|.+.|.|.|.. | ..+.+. .
T Consensus 316 ---------------------P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~ 374 (1281)
T KOG4222|consen 316 ---------------------PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP 374 (1281)
T ss_pred ---------------------cccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC
Confidence 6777778888999999999999999999999999998743 2 112221 3
Q ss_pred cCeEEECCCC
Q psy17058 461 NGELRLGPHK 470 (471)
Q Consensus 461 ~~~l~i~~~~ 470 (471)
.++|+|.++.
T Consensus 375 ~g~L~it~v~ 384 (1281)
T KOG4222|consen 375 TGTLTITNVR 384 (1281)
T ss_pred CCCccccccc
Confidence 4577777664
No 7
>KOG4194|consensus
Probab=99.97 E-value=1.4e-29 Score=233.66 Aligned_cols=272 Identities=28% Similarity=0.468 Sum_probs=225.7
Q ss_pred cCCCCcEEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCCC-Cc-------------------ccCcEEEE
Q psy17058 88 SPQANEVQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLPP-NM-------------------IAGETLII 144 (471)
Q Consensus 88 ~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~~-~~-------------------~~~~~L~i 144 (471)
....|+|..+|..+....|+.++|+|. .+ ..+..+.|.+++. ..+. .. ...+.|.+
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dne-vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L 578 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNE-VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHL 578 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccc-cCcccchhcchhhhhhhccCccchhhhhhheeee
Confidence 467789999999999999999999999 33 4456899999843 3221 00 02357999
Q ss_pred cCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC-C
Q psy17058 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-G 223 (471)
Q Consensus 145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~-~ 223 (471)
.||+..|+|.|+|.++|..|...+..+.++|. ..|.+...| .+.++..|+.+.|.|.+ .|.|.|.+.|.|+|+. .
T Consensus 579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~--~~PsFtktP-~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN--QAPSFTKTP-EDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred eeeecccCceEEEEEecccCcchhheeEEEee--ccCccccCc-ccceeecccceeeeeec-cCCCCcceeehhcCCCCC
Confidence 99999999999999999999877777777776 567766665 46689999999999999 8999999999999876 3
Q ss_pred CcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec
Q psy17058 224 KFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR 301 (471)
Q Consensus 224 ~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~ 301 (471)
+.. .++.+..++..+.|.+++.+|.|.|+|.|.|..|..+.+++|.|.+.|.+.+. .....+..|+++.|.|.+.+.
T Consensus 655 PAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~ 733 (873)
T KOG4194|consen 655 PAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGA 733 (873)
T ss_pred chhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc-ccceEEEecceEEEEEecCCC
Confidence 332 35556666788999999999999999999999999999999999999887654 456788999999999999998
Q ss_pred CC-CeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecC
Q psy17058 302 PM-PTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365 (471)
Q Consensus 302 p~-~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 365 (471)
|. |++.|+|+++++.-..+......+..|.+.+...+|+|.|+|...|..|.....+.+.+...
T Consensus 734 ~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 734 PADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK 798 (873)
T ss_pred CCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence 87 89999999998764444345667778999999999999999999999999988887777654
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=219.71 Aligned_cols=249 Identities=19% Similarity=0.297 Sum_probs=175.5
Q ss_pred ceeecCCCcEEEEee------CCCCCCeEEEEeCCCCCCCCCc--ccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058 100 QQSAPEGSQVTIECK------SNDPSATIKWSKDNQEQLPPNM--IAGETLIINGITKADEGVYICSIQNAQGNVFQDYA 171 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~------~~~p~~~v~W~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~ 171 (471)
...+.+|+.+.|.|. .+.|.+.++|+|++ ....... ..+..|.|.++..+|+|.|+|.+.|..+. ...+.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g-~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~ 112 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRG-ADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSL 112 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECC-CccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEE
Confidence 345778999999998 37788899999994 3222111 13456899999999999999999998876 55667
Q ss_pred EEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc----cCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCC
Q psy17058 172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL----EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247 (471)
Q Consensus 172 ~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 247 (471)
.|.|....++.+... .....+.+|+.+.|.|.. ..+.|.+.++|+++.. + ...++... .++.|.|.+++.+|
T Consensus 113 ~L~V~~~~~~~~~~~-~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~-~~~~L~i~~v~~~d 188 (326)
T PHA02785 113 NLTIVSVSESNIDLI-SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR-TPGIITIEDVRKND 188 (326)
T ss_pred EEEEEecCCCcccee-eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec-CCCeEEEeecChhh
Confidence 777765443333221 123356789999999972 1356889999998542 1 22233222 25689999999999
Q ss_pred CeEEEEEEEcCCCceEE----EEEEEEEe--CCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeCCccCCCc
Q psy17058 248 EGKYTCIAENSAGKEVM----NAYIHVLT--LPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKYIAPFDRN 318 (471)
Q Consensus 248 ~G~Y~C~~~~~~~~~~~----~~~l~V~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~~~~~~~~ 318 (471)
.|.|+|.+.|..+.... .+.|.|.. .|.....| ....+..|+.+.|.|.+.|.|.+ .+.|+++|..+...
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~ 267 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED 267 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence 99999999998776432 34455542 12222333 35677889999999999998864 79999999877431
Q ss_pred c-----c--c--------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058 319 L-----E--R--------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355 (471)
Q Consensus 319 ~-----~--~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 355 (471)
. . . ........|.|.+++.+|+|.|+|.|.|..|...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1 0 0 0011246899999999999999999999885543
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=2.8e-24 Score=198.58 Aligned_cols=212 Identities=18% Similarity=0.304 Sum_probs=154.1
Q ss_pred eEEcCCeEEEEEEcc----CCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 192 TFIVGDRADIQCVLE----AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
.+.+|+.+.|.|.+. .+.|.++++|+|++.... +......+..|.|.++..+|+|.|+|.++|..+....++.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 355799999999862 577888999999975411 1222233445889999999999999999999887777888
Q ss_pred EEEEeCCc--eeeCCCccEEecCCCcEEEEEE-----EeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCC
Q psy17058 268 IHVLTLPA--VTITPSEYVSVRPGEPLTLECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA 340 (471)
Q Consensus 268 l~V~~~p~--~~~~~~~~~~~~~g~~v~l~C~-----~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 340 (471)
|.|..... +... .....+.+|..+.|.|. ..+.|++.++|+++.. +... + ......+.|.|.+++.+|+
T Consensus 114 L~V~~~~~~~~~~~-~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~-r-~~~~~~~~L~i~~v~~~d~ 189 (326)
T PHA02785 114 LTIVSVSESNIDLI-SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNK-R-LKQRTPGIITIEDVRKNDA 189 (326)
T ss_pred EEEEecCCCcccee-eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCc-c-eEecCCCeEEEeecChhhC
Confidence 88865432 2211 12235678999999997 2357888999988643 2211 1 1222356899999999999
Q ss_pred eEEEEEEEcCCCceEE----EEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeE
Q psy17058 341 GQYKCIGKNSAGTEEK----VITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRIT 416 (471)
Q Consensus 341 G~Y~C~a~n~~g~~~~----~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~ 416 (471)
|.|+|.|.|..|.... .+.|.|..+. .||.+.
T Consensus 190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~--------------------------------------------~pp~~~ 225 (326)
T PHA02785 190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRI--------------------------------------------IPPTMQ 225 (326)
T ss_pred eEEEEEEEeccCCEEEeEEEEEEEEEeccC--------------------------------------------CCceec
Confidence 9999999999887643 3455554421 245553
Q ss_pred EcCCeeeeeCCCeEEEEEEecccCC---ceEEEecCCCCCCC
Q psy17058 417 LRPVRQTVKPGDIANIRCSAIGATP---ISIRWQPLQGYFPS 455 (471)
Q Consensus 417 ~~~~~~~~~~g~~~~l~C~~~g~p~---~~v~W~~~g~~l~~ 455 (471)
.|....+..|+.+.|.|.+.|.|+ +.+.|+|||+.|.+
T Consensus 226 -~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 226 -LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred -CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 455677888999999999999887 48999999998854
No 10
>KOG4194|consensus
Probab=99.92 E-value=5.9e-24 Score=196.68 Aligned_cols=241 Identities=22% Similarity=0.422 Sum_probs=195.5
Q ss_pred ccccceeeeccceEEEEecCcEEEEEEeeeCCc---cEEEeccchhhh--------------------------------
Q psy17058 34 GEVTQFVSAENHEVTVYEGGDAELKCNTYYAPG---RWMWLNFYSFLS-------------------------------- 78 (471)
Q Consensus 34 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~---~~~w~~~~~~~~-------------------------------- 78 (471)
..+.+.+...+..+.+..|++++|+|.+..+.. .+.|.+......
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 455667788888999999999999999986433 788986433111
Q ss_pred -------heeeeeee-------------ecCCCCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc
Q psy17058 79 -------LIIICLAY-------------LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI 137 (471)
Q Consensus 79 -------~~~~c~~~-------------~~~~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~ 137 (471)
.-|+|.+. .....|.+...|.+.++..|+.+.|.|. .|+|.|++.|-|++|..++....
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE 659 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence 11577765 2356788888999999999999999999 99999999999998877765332
Q ss_pred -------cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCC
Q psy17058 138 -------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210 (471)
Q Consensus 138 -------~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p 210 (471)
....+.|.||+.+|+|.|+|.|.|..|. .+..+++.|. +.|.+.+ |..+..+..|+.+.|.|.+ .+.|
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~--e~p~f~~-PL~~~~V~~get~vlqC~a-~~~~ 734 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVL--ETPSFSI-PLEDQLVVVGETLVLQCLA-EGAP 734 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEe--cCCcccc-cccceEEEecceEEEEEec-CCCC
Confidence 6778999999999999999999999999 7888888887 4454433 3456688999999999999 5555
Q ss_pred C-CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeC
Q psy17058 211 S-PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT 279 (471)
Q Consensus 211 ~-~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~ 279 (471)
. +...|+|+++.+.+..+..+...+..|.+.+...+|.|.|+|...+..+.......+.+...+....+
T Consensus 735 a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~S 804 (873)
T KOG4194|consen 735 ADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMS 804 (873)
T ss_pred CCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccc
Confidence 5 99999999999888887777776778899999999999999999999998888888887766654433
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.83 E-value=3.1e-19 Score=154.64 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=113.8
Q ss_pred ceeEEcCCeEEEEEEccCCC-----------CCCeEEEEeCCCCCCc--C-CC--------ceEEeeeceEEEeccCCCC
Q psy17058 190 SQTFIVGDRADIQCVLEAGE-----------PSPTQTWIRPDNDGKF--G-PD--------VEVYQELGVLRFNNIATGD 247 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~-----------p~~~v~W~~~~~~~~~--~-~~--------~~~~~~~~~l~i~~~~~~d 247 (471)
...+.+|+++.|.|.+ .+. ....+.|+|++...-. . .+ .+....+..|.|.+++.+|
T Consensus 31 ~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 31 PVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred eEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 4567899999999997 332 3458999998643100 0 00 1111225689999999999
Q ss_pred CeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCccccc
Q psy17058 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERD 322 (471)
Q Consensus 248 ~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~~~~~ 322 (471)
+|.|+|.+.|..+.....+.|.|...+ ....+.+|+++.|.|.+.+ .|.|+++|+|++..+.......
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 999999999988777777778774322 1235678999999999863 4578999999999876433322
Q ss_pred ccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 323 ELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
......+|.|.+++.+|+|.|+|.|+...
T Consensus 183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 183 LRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 22345689999999999999999999864
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.82 E-value=8.3e-19 Score=151.96 Aligned_cols=151 Identities=22% Similarity=0.353 Sum_probs=111.8
Q ss_pred CceeecCCCcEEEEee-CCC-----------CCCeEEEEeCCCCC-C--C-C---------C--cccCcEEEEcCCCCCC
Q psy17058 99 RQQSAPEGSQVTIECK-SND-----------PSATIKWSKDNQEQ-L--P-P---------N--MIAGETLIINGITKAD 151 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~-~~~-----------p~~~v~W~~~~~~~-~--~-~---------~--~~~~~~L~i~~v~~~D 151 (471)
..+.+.+|+++.|.|. .+. ..+.+.|+|++... + . . . ...+..|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 4567999999999999 442 34589999984221 0 0 0 1 0135699999999999
Q ss_pred CeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCC
Q psy17058 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGP 227 (471)
Q Consensus 152 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~ 227 (471)
+|.|+|.+.|..+. ......|.|. ..+ ....+.+|+.++|.|.+..+ .|.++++|+|++..+....
T Consensus 110 sG~Y~C~a~N~~~~-~~~~i~L~V~--~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~ 179 (227)
T PHA02826 110 EGIYICTISSGNIC-EESTIRLTFD--SGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD 179 (227)
T ss_pred CEEEEEEEEECCcc-eEEEEEEEEe--cCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence 99999999997765 4444444442 211 23356789999999998443 4578999999999876666
Q ss_pred CceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 228 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
++.+...++.|.|.+++.+|+|.|+|.++...
T Consensus 180 r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 180 RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 66555556689999999999999999998754
No 13
>KOG3515|consensus
Probab=99.69 E-value=1.3e-15 Score=148.78 Aligned_cols=407 Identities=15% Similarity=0.160 Sum_probs=238.6
Q ss_pred EEEEecCcEEEEEEeee--CCccEEEeccchhhhh---------------------eeeeeeeecC-------------C
Q psy17058 47 VTVYEGGDAELKCNTYY--APGRWMWLNFYSFLSL---------------------IIICLAYLSP-------------Q 90 (471)
Q Consensus 47 ~~v~~g~~~~l~C~~~~--~~~~~~w~~~~~~~~~---------------------~~~c~~~~~~-------------~ 90 (471)
.-+.+|+.|.|.|.+.. |...++|+...+.+.. -+.|.+.... .
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 38899999999999983 4458999976554430 1234443221 1
Q ss_pred CCcEEEcCCceeecCCCcEEEEee---CCCCCCeEEEEeCCCCCCCCC-------------c-ccCcEEEEcCCCCCCCe
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPN-------------M-IAGETLIINGITKADEG 153 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~---~~~p~~~v~W~~~~~~~~~~~-------------~-~~~~~L~i~~v~~~D~G 153 (471)
+|.-...-.......+..+.+.|. .+.|.+.+.|..++....... . .....|++...+.+|.|
T Consensus 97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g 176 (741)
T KOG3515|consen 97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG 176 (741)
T ss_pred CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence 111111112345667888999995 677889999999832221111 1 13557888999999999
Q ss_pred EEEEEEEecCCce--eeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE
Q psy17058 154 VYICSIQNAQGNV--FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV 231 (471)
Q Consensus 154 ~Y~C~~~~~~~~~--~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~ 231 (471)
.|+|.+.+..... ......+.+.................+.+|+.+.|.|.+..++|...++|+++......+.....
T Consensus 177 ~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~ 256 (741)
T KOG3515|consen 177 NYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ 256 (741)
T ss_pred eeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC
Confidence 9999998853221 22233333332222222222223356779999999998888999999999998876444311111
Q ss_pred Eee----eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEee-cCCCeE
Q psy17058 232 YQE----LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTV 306 (471)
Q Consensus 232 ~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i 306 (471)
... ...+.+..-...+.-...|.+.| ....+..+.+..++...........+..|++..+.|...+ +|.+.+
T Consensus 257 ~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i 333 (741)
T KOG3515|consen 257 EPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHI 333 (741)
T ss_pred CCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccccccccCcccccccccccccceeccCCCCccce
Confidence 111 11233333333444567799987 2222233344444432222222335778999999998654 777799
Q ss_pred EEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEEecCCCCCCCCCCC---
Q psy17058 307 SWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAVEHRPEYGPISPRP--- 375 (471)
Q Consensus 307 ~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~~~~--- 375 (471)
.|+++......... .........+........|.|.|+|.|.|...... ..+.+.+...|.+.......
T Consensus 334 ~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~ 413 (741)
T KOG3515|consen 334 AWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVA 413 (741)
T ss_pred eeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceee
Confidence 99996554432211 11111223455666778899999999999875443 34666666666443322211
Q ss_pred -------CCccc---cCCC--cc----cCCCC-CC---------Cc-eEEEcCCcce--EEe----------------ee
Q psy17058 376 -------GADIL---PDGD--EY----YRPEP-EE---------GE-YVYAVGSNAS--ISC----------------SV 410 (471)
Q Consensus 376 -------~~~~~---~~~~--~w----~~~~~-~~---------~~-~~~~~~~~~~--y~c----------------~~ 410 (471)
.+.+. +... .| .+--+ ++ +. .+.++...|. |.| +.
T Consensus 414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~ 493 (741)
T KOG3515|consen 414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH 493 (741)
T ss_pred ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence 11111 1111 44 11111 11 11 4556666666 877 34
Q ss_pred cCCeeEEcCCeeeeeCCCeEEEEEEecccCCc--eEEEecCCCCCCCc
Q psy17058 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPI--SIRWQPLQGYFPSH 456 (471)
Q Consensus 411 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~l~~~ 456 (471)
..|.+...........|.++.+.|..+..|.- .+.|.+.|.+..+.
T Consensus 494 ~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~ 541 (741)
T KOG3515|consen 494 TSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQ 541 (741)
T ss_pred cCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCccc
Confidence 45555544444666778889999999988764 78999999887543
No 14
>KOG3515|consensus
Probab=99.63 E-value=3.2e-15 Score=146.03 Aligned_cols=311 Identities=20% Similarity=0.271 Sum_probs=194.0
Q ss_pred CCCcEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 90 QANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 90 ~~~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
..|.....+-+..+.+|+.|.|.|. .+.|...|.|++.+. ....+.. ...+|.......+.-+.|.|.+.|..+.
T Consensus 6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTS-GEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCc-ccccccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence 3444444444447999999999999 667778999999944 3332222 6678888888888899999999998665
Q ss_pred eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEc-cCCCCCCeEEEEeCCCCCCcCCC----------ceEEee
Q psy17058 166 VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL-EAGEPSPTQTWIRPDNDGKFGPD----------VEVYQE 234 (471)
Q Consensus 166 ~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~-~~~~p~~~v~W~~~~~~~~~~~~----------~~~~~~ 234 (471)
.. ...+...+..+|...... .......+..+.+.|.+ ..+.|.+.+.|..+......... ......
T Consensus 85 ~~--~~~~~l~v~~~pa~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~ 161 (741)
T KOG3515|consen 85 PS--RCPMILDVDYPPACLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE 161 (741)
T ss_pred ce--ecceeeccccCccccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence 22 333344444555433222 22234578899999944 35677889999988654222110 001122
Q ss_pred eceEEEeccCCCCCeEEEEEEEcCCCc---eEEEEEEEEEeCCc-eeeCCCc-cEEecCCCcEEEEEEEee-cCCCeEEE
Q psy17058 235 LGVLRFNNIATGDEGKYTCIAENSAGK---EVMNAYIHVLTLPA-VTITPSE-YVSVRPGEPLTLECEATG-RPMPTVSW 308 (471)
Q Consensus 235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~V~~~p~-~~~~~~~-~~~~~~g~~v~l~C~~~g-~p~~~i~W 308 (471)
.+.+.+......+.|.|+|.+.+.... ......+.+..... +.+.... .....+|+.+.|.|.+.+ +|.+.+.|
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 456788888899999999999985332 33334444443222 2222222 246789999999998765 88889999
Q ss_pred EeCCccCCCcccccc----cCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCC
Q psy17058 309 VKYIAPFDRNLERDE----LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~ 384 (471)
+++............ ......+.+..-..++.-...|.+.| -..+...+.+..++
T Consensus 242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~------------------ 300 (741)
T KOG3515|consen 242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKP------------------ 300 (741)
T ss_pred ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeeccccc------------------
Confidence 998877654311011 11122333333333344467799998 22233344444442
Q ss_pred cccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCCCeEEEEEEec-ccCCceEEEecCCCCC
Q psy17058 385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAI-GATPISIRWQPLQGYF 453 (471)
Q Consensus 385 ~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~l 453 (471)
-...+.+....+..|+...+.|... .+|.+.+.|+|+....
T Consensus 301 ----------------------------~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~ 342 (741)
T KOG3515|consen 301 ----------------------------TAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMP 342 (741)
T ss_pred ----------------------------ccccccCcccccccccccccceeccCCCCccceeeeccCccc
Confidence 1222333345577899999998876 6788899999976554
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.62 E-value=6.9e-15 Score=110.49 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=74.4
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
....+..|+.+.|.|.+.|.|++++.|+|++..+.... ........+.|+|.++..+|+|.|+|.|.|..|....++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 45788999999999999999999999999999886432 2223345688999999999999999999999999999999
Q ss_pred EEEecCC
Q psy17058 360 VAVEHRP 366 (471)
Q Consensus 360 l~V~~~p 366 (471)
|.|.++|
T Consensus 88 l~V~~~P 94 (98)
T cd05762 88 LTVVDKP 94 (98)
T ss_pred EEEecCC
Confidence 9999887
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.7e-14 Score=106.27 Aligned_cols=88 Identities=28% Similarity=0.502 Sum_probs=72.5
Q ss_pred CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
+|.+...+. +..+.+|+.+.|.|.+.|+|.|.++|++++..+..... .......|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~p~i~~~~~-~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 1 PADINVKFK-DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISMSGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEccc-cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--EecCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 355555553 56788999999999999999999999999887754332 122356899999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy17058 353 TEEKVITVAVE 363 (471)
Q Consensus 353 ~~~~~~~l~V~ 363 (471)
..+..+.|.|+
T Consensus 78 ~~~~~~~l~V~ 88 (88)
T cd05851 78 KDKHQARVYVQ 88 (88)
T ss_pred ceEEEEEEEEC
Confidence 99999988874
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=2.7e-14 Score=105.13 Aligned_cols=83 Identities=31% Similarity=0.546 Sum_probs=70.6
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCce
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNV 166 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~ 166 (471)
||.|.+.+.+..+.+|+.+.|.|. .+.|.+.++|+|+ +..+..... .+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~- 78 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKI-LEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK- 78 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEEC-CcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-
Confidence 588999999999999999999999 9999999999999 555544322 4568999999999999999999999998
Q ss_pred eeeeEEEEE
Q psy17058 167 FQDYASIQV 175 (471)
Q Consensus 167 ~~~~~~l~v 175 (471)
....+.|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd05851 79 DKHQARVYV 87 (88)
T ss_pred eEEEEEEEE
Confidence 666666655
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=2.8e-14 Score=107.26 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=68.5
Q ss_pred cEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCccccccc-------CceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 283 YVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDEL-------TSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
.+.+.+|+++.|.|.+.| .|+|.+.|+|+|..+......... ...++|.|..+..+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 467889999999999999 888999999999988743221111 135789999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy17058 355 EKVITVAVE 363 (471)
Q Consensus 355 ~~~~~l~V~ 363 (471)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.55 E-value=5.3e-14 Score=102.93 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=67.7
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc---ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN---LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .........+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 457889999999999999999999999999888632 22222234678999999999999999999999999999888
Q ss_pred EEE
Q psy17058 360 VAV 362 (471)
Q Consensus 360 l~V 362 (471)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 865
No 20
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=2.4e-14 Score=101.91 Aligned_cols=74 Identities=28% Similarity=0.530 Sum_probs=63.3
Q ss_pred CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+|+++.|.|.+.|+|.|.+.|++++..+..... ......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRR-HLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCC-eEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999999999999987754322 12234568999999999999999999999999999988875
No 21
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=1.4e-13 Score=102.20 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058 279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 279 ~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 356 (471)
.++.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+..... .........|.|.++..+|.|.|+|.|.|..|....
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 344456689999999999999999999999999987753321 122345678999999999999999999999999999
Q ss_pred EEEEEE
Q psy17058 357 VITVAV 362 (471)
Q Consensus 357 ~~~l~V 362 (471)
++.|.|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 988865
No 22
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=1.8e-13 Score=101.18 Aligned_cols=80 Identities=29% Similarity=0.477 Sum_probs=67.7
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|..+.+..|.
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY 86 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE--EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence 4567889999999999999999999999988765433221 23567899999999999999999999999999999888
Q ss_pred Ee
Q psy17058 362 VE 363 (471)
Q Consensus 362 V~ 363 (471)
|+
T Consensus 87 V~ 88 (88)
T cd04968 87 VQ 88 (88)
T ss_pred EC
Confidence 74
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.52 E-value=1.5e-13 Score=102.49 Aligned_cols=81 Identities=32% Similarity=0.464 Sum_probs=67.2
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--cccc-CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDEL-TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 358 (471)
..+.+.+|+++.|.|.+.|.|.|++.|++++..+..... .... ....+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 346788999999999999999999999999988764321 1111 2346899999999999999999999999999988
Q ss_pred EEEE
Q psy17058 359 TVAV 362 (471)
Q Consensus 359 ~l~V 362 (471)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 8765
No 24
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.52 E-value=8.4e-14 Score=95.60 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
+.|.|.+.|+|.|.+.|+|+|..+... ...+.|.|.++..+|+|.|+|.|+|..|..++++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999888532 245699999999999999999999999988877777653
No 25
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=1.4e-13 Score=103.44 Aligned_cols=82 Identities=30% Similarity=0.505 Sum_probs=68.8
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc-ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN-LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
+..+..|+++.|.|.+.|.|.|.+.|++++..+... .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 347889999999999999999999999999887643 2212223456799999999999999999999999999999998
Q ss_pred Eec
Q psy17058 362 VEH 364 (471)
Q Consensus 362 V~~ 364 (471)
|..
T Consensus 92 V~~ 94 (95)
T cd05730 92 VFA 94 (95)
T ss_pred EEe
Confidence 864
No 26
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=6.8e-14 Score=98.66 Aligned_cols=73 Identities=23% Similarity=0.462 Sum_probs=62.0
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
|+.+.|.|.+.|.|.|.+.|+|++..+....+ .....+++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r-~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSR-ISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCC-EEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999887654322 22334568999999999999999999999999999988865
No 27
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=1.5e-13 Score=101.17 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=65.3
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
|+.+.|.|.+.|.|++.+.|++++..+....... .....++|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 7889999999999999999999998774321100 112337899999999999999999999999999999999
Q ss_pred EecCC
Q psy17058 362 VEHRP 366 (471)
Q Consensus 362 V~~~p 366 (471)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 99876
No 28
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.51 E-value=1.9e-13 Score=102.94 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=68.2
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccc--------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE--------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
...+..|+.+.|.|.+.|+|+|.+.|+|++.++........ ....++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 35788899999999999999999999999999874432111 1234789999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy17058 355 EKVITVAVE 363 (471)
Q Consensus 355 ~~~~~l~V~ 363 (471)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999988875
No 29
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=1.4e-13 Score=98.51 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=62.2
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
|+++.|.|.+.|.|.|+++|++++..+...... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 788999999999999999999999877543211 12234568999999999999999999999999999998887
No 30
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.50 E-value=1.1e-13 Score=97.87 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCc-cccc---ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRN-LERD---ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|.+.|+|++..+... .+.. ......+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999999887632 1111 1122348999999999999999999999999999988875
No 31
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.49 E-value=3.4e-13 Score=101.33 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=75.1
Q ss_pred CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy17058 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265 (471)
Q Consensus 188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 265 (471)
+....+..|+.+.|.|.+ .|.|.+.+.|+|++..+....++.+.. ..+.|.|.++..+|+|.|+|.+.|..|....+
T Consensus 7 p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 7 PEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred CcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 346678999999999999 899999999999998876555555542 35679999999999999999999999999999
Q ss_pred EEEEEEeCCc
Q psy17058 266 AYIHVLTLPA 275 (471)
Q Consensus 266 ~~l~V~~~p~ 275 (471)
+.|.|...|.
T Consensus 86 ~~l~V~~~P~ 95 (98)
T cd05762 86 VNLTVVDKPD 95 (98)
T ss_pred EEEEEecCCC
Confidence 9999998764
No 32
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=1.2e-13 Score=97.95 Aligned_cols=71 Identities=28% Similarity=0.439 Sum_probs=57.6
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccc-cc--c-CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLER-DE--L-TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~--~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|.+.|+|++..+...... .. . ....+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999887632111 11 1 12237999999999999999999999999999988875
No 33
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.48 E-value=2.9e-13 Score=99.16 Aligned_cols=79 Identities=28% Similarity=0.474 Sum_probs=67.6
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
.+..+..|+.+.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRI--EVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeE--EEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 4568889999999999999999999999999987643321 22456899999999999999999999999999988886
Q ss_pred E
Q psy17058 362 V 362 (471)
Q Consensus 362 V 362 (471)
|
T Consensus 85 V 85 (85)
T cd05728 85 V 85 (85)
T ss_pred C
Confidence 5
No 34
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=2.8e-13 Score=96.73 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=62.0
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
|+.+.|.|.+.|+|.|+++|++++..+..... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 68899999999999999999999988753211 1112234589999999999999999999999999999999873
No 35
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=4.5e-13 Score=97.75 Aligned_cols=77 Identities=26% Similarity=0.408 Sum_probs=63.1
Q ss_pred CcEEEEEEEeecCCC--eEEEEeCCccCCCcc---c---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 290 EPLTLECEATGRPMP--TVSWVKYIAPFDRNL---E---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 290 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
+++.|.|.+.|.|.| .+.|++++..+.... . .......++|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 689999998775321 1 11112457999999999999999999999999999999999
Q ss_pred EecCC
Q psy17058 362 VEHRP 366 (471)
Q Consensus 362 V~~~p 366 (471)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98764
No 36
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.47 E-value=8.1e-13 Score=99.55 Aligned_cols=89 Identities=24% Similarity=0.499 Sum_probs=68.2
Q ss_pred CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEE
Q psy17058 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKC 345 (471)
Q Consensus 273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C 345 (471)
.|.+...+. ...+..|+.+.|.|.+.|.|.|.++|++++..+..... .......+.|.|.+++.+|+|.|+|
T Consensus 2 ~p~i~~~~~-~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVEN-QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CceEEEccC-ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 355554443 23455689999999999999999999998876542211 0112234689999999999999999
Q ss_pred EEEcCCCceEEEEEEEE
Q psy17058 346 IGKNSAGTEEKVITVAV 362 (471)
Q Consensus 346 ~a~n~~g~~~~~~~l~V 362 (471)
.|.|..|..+.++.|.|
T Consensus 81 ~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEecCCCCeeEEEEEEC
Confidence 99999999999988875
No 37
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=7.6e-13 Score=97.83 Aligned_cols=84 Identities=32% Similarity=0.508 Sum_probs=68.7
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCcee
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNVF 167 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 167 (471)
|+.+...|....+.+|+++.|.|. .+.|.+.+.|++++......... ....|.|.+++.+|+|.|+|.+.|..|. .
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-D 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-E
Confidence 456777888999999999999999 88999999999985544333221 5679999999999999999999999988 6
Q ss_pred eeeEEEEE
Q psy17058 168 QDYASIQV 175 (471)
Q Consensus 168 ~~~~~l~v 175 (471)
...+.|.|
T Consensus 80 ~~~~~l~V 87 (88)
T cd04968 80 THQGRIYV 87 (88)
T ss_pred EEEEEEEE
Confidence 66666655
No 38
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.47 E-value=3.4e-13 Score=96.84 Aligned_cols=75 Identities=27% Similarity=0.424 Sum_probs=63.6
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 788999999999999999999999877543221 233455789999999999999999999999999999998873
No 39
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=4.3e-13 Score=94.49 Aligned_cols=71 Identities=28% Similarity=0.500 Sum_probs=58.5
Q ss_pred cEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 291 PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 291 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
++.|.|.+.|.|.|.++|+|++..+..... ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999987654322 12223456888999999999999999999999999988865
No 40
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=4.2e-13 Score=95.24 Aligned_cols=73 Identities=26% Similarity=0.488 Sum_probs=62.1
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
|+.+.|.|.+.|.|.|.+.|++++..+...... .......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRI-CIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCE-EECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999887543221 2234468999999999999999999999999999988875
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.46 E-value=7.9e-13 Score=98.54 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=63.2
Q ss_pred EEecCCCcEEEEEEEeecCC-CeEEEEe-CCccCCCcccc----cccCceeEEEEeecCCCCCeEEEEEEEcCC-CceEE
Q psy17058 284 VSVRPGEPLTLECEATGRPM-PTVSWVK-YIAPFDRNLER----DELTSRAVYTIASVRESDAGQYKCIGKNSA-GTEEK 356 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~-~~i~W~~-~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~ 356 (471)
..+..|+++.|.|.+.|.|. |.++|++ ++..+...... ......++|.|.+++.+|+|.|+|.|.|.. |..+.
T Consensus 10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 46888999999999999995 6999998 67665432111 112234789999999999999999999996 88898
Q ss_pred EEEEEE
Q psy17058 357 VITVAV 362 (471)
Q Consensus 357 ~~~l~V 362 (471)
++.|.|
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 888876
No 42
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.45 E-value=9.3e-13 Score=98.17 Aligned_cols=87 Identities=25% Similarity=0.499 Sum_probs=70.6
Q ss_pred CCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 273 ~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
+|.+...| ....+.+|+.+.|.|.+.|+|.|.+.|++++..+.... ........++|.|.++..+|+|.|+|.|.|.
T Consensus 3 ~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 45555444 46789999999999999999999999999988775432 1122334579999999999999999999999
Q ss_pred CCceEEEEEE
Q psy17058 351 AGTEEKVITV 360 (471)
Q Consensus 351 ~g~~~~~~~l 360 (471)
.|..+.++.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9999888776
No 43
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=7.4e-13 Score=96.72 Aligned_cols=79 Identities=24% Similarity=0.511 Sum_probs=65.7
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+....|+++.|.|.+.|.|.|.+.|++++..+..............|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 3466799999999999999999999999988754333223344578999999999999999999999999988888764
No 44
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.45 E-value=5.5e-13 Score=93.93 Aligned_cols=71 Identities=38% Similarity=0.659 Sum_probs=59.8
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
+.|.|.+.|+|.|.+.|++++..+..... .......+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47899999999999999999887654321 223456799999999999999999999999999999988873
No 45
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.45 E-value=6.9e-13 Score=97.51 Aligned_cols=79 Identities=25% Similarity=0.467 Sum_probs=65.7
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 360 (471)
..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 35778999999999999999999999999887643221 112235679999999999999999999999999999888
Q ss_pred EE
Q psy17058 361 AV 362 (471)
Q Consensus 361 ~V 362 (471)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 46
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=1.2e-12 Score=98.78 Aligned_cols=80 Identities=26% Similarity=0.491 Sum_probs=65.6
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc-------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL-------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 355 (471)
+..+.+|+++.|.|.+.|.|.|.+.|++++..+.... ........+.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 5678899999999999999999999999886554211 111123457899999999999999999999999999
Q ss_pred EEEEEEE
Q psy17058 356 KVITVAV 362 (471)
Q Consensus 356 ~~~~l~V 362 (471)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 9888865
No 47
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=1.1e-12 Score=98.97 Aligned_cols=81 Identities=23% Similarity=0.499 Sum_probs=63.7
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeC--CccCCCc-------ccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~--~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
.+..+.+|++++|.|.+.|.|.|.+.|++. +..+... ..........+|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 357889999999999999999999999995 3322210 1111112346899999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy17058 353 TEEKVITVAV 362 (471)
Q Consensus 353 ~~~~~~~l~V 362 (471)
....++.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9999888865
No 48
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.44 E-value=6.4e-13 Score=93.41 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
+.|.|.+.|.|.|.+.|+|++..+..... ......+|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR--TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46999999999999999999998865432 23455789999999999999999999999998887777653
No 49
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=5.3e-13 Score=94.95 Aligned_cols=74 Identities=28% Similarity=0.491 Sum_probs=62.9
Q ss_pred cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
+|+.+.|.|.+ .+.|.+.++|+|++..+....+..+. ..+.|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL-SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc-cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999 89999999999998876554444333 3678999999999999999999999999888887764
No 50
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=1.2e-12 Score=100.55 Aligned_cols=95 Identities=24% Similarity=0.364 Sum_probs=71.0
Q ss_pred eCCceeeCCCccEEe---cCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccc-------ccCceeEEEEeecC-CCCC
Q psy17058 272 TLPAVTITPSEYVSV---RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVR-ESDA 340 (471)
Q Consensus 272 ~~p~~~~~~~~~~~~---~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~-~~d~ 340 (471)
.+|.+...+.....+ ..|..+.|.|.+.|.|.+.+.|++++..+....... .....+.|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 355554444321222 356889999999999999999999998875321100 11224789999997 5899
Q ss_pred eEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058 341 GQYKCIGKNSAGTEEKVITVAVEHRP 366 (471)
Q Consensus 341 G~Y~C~a~n~~g~~~~~~~l~V~~~p 366 (471)
|.|+|.|.|..|....++.|.+..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999998875
No 51
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.43 E-value=3.7e-12 Score=103.05 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=86.8
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeec-CC-CeEEEEeCCcc
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR-PM-PTVSWVKYIAP 314 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~ 314 (471)
.|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+.+.+.. ....+|+.+.|.|.+.|. |. ++|.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5899999999999999999998888888899999999998877643 334478999999999984 54 48999999864
Q ss_pred CCC------cc--------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 315 FDR------NL--------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 315 ~~~------~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
... .. ........+.|.+.....++...|+|.|.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 211 10 0111223456667666666677999999986543
No 52
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.43 E-value=1.2e-12 Score=98.37 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=67.5
Q ss_pred CceeEEcCCeEEEEEEccCC-CCCCeEEEEeCCCCCCcCCCceEEee-------eceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 189 ASQTFIVGDRADIQCVLEAG-EPSPTQTWIRPDNDGKFGPDVEVYQE-------LGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
....+.+|+++.|.|.+ .+ .|.+.+.|+|+|..+.......+... .+.|.|..+..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 34567899999999999 66 89999999999988664433332221 46799999999999999999999999
Q ss_pred ceEEEEEEEEE
Q psy17058 261 KEVMNAYIHVL 271 (471)
Q Consensus 261 ~~~~~~~l~V~ 271 (471)
..+..+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 98888888875
No 53
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=9.3e-13 Score=96.61 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=63.4
Q ss_pred CcEEEEEEEeecCCC--eEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 290 EPLTLECEATGRPMP--TVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 290 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
+++.|.|.+.|.|.+ .+.|++++..+.... ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999887 679999998775321 111223567899999999999999999999999999999999
Q ss_pred EecCC
Q psy17058 362 VEHRP 366 (471)
Q Consensus 362 V~~~p 366 (471)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98764
No 54
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.43 E-value=1.2e-12 Score=97.20 Aligned_cols=81 Identities=32% Similarity=0.460 Sum_probs=66.5
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc--cc-ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RD-ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 358 (471)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .. ......+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 456889999999999999999999999999887654321 11 112235799999999999999999999999999998
Q ss_pred EEEE
Q psy17058 359 TVAV 362 (471)
Q Consensus 359 ~l~V 362 (471)
.|.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 8865
No 55
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=1e-12 Score=97.84 Aligned_cols=86 Identities=36% Similarity=0.659 Sum_probs=72.6
Q ss_pred eeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 276 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+... ..........+|.|.++..+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~ 81 (90)
T PF07679_consen 3 FTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE 81 (90)
T ss_dssp EEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred EEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence 33333 4678999999999999999999999999999888742 23333447889999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy17058 354 EEKVITVAV 362 (471)
Q Consensus 354 ~~~~~~l~V 362 (471)
.+.++.|.|
T Consensus 82 ~~~~~~l~V 90 (90)
T PF07679_consen 82 ATASVNLTV 90 (90)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 999988876
No 56
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=8.4e-13 Score=93.07 Aligned_cols=73 Identities=32% Similarity=0.533 Sum_probs=62.7
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
|+.+.|.|.+ .+.|.+.+.|+|++..+....++.+.. ++.|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD-DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC-CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6889999999 789999999999988765555555544 678999999999999999999999999988888764
No 57
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.43 E-value=1.2e-12 Score=93.26 Aligned_cols=72 Identities=33% Similarity=0.511 Sum_probs=60.6
Q ss_pred cEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 291 PLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 291 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
.+.|.|.+.|.|.|.+.|++++..+.... ........+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999998874332 2222345678999999999999999999999999999988865
No 58
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=7.7e-13 Score=92.07 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|+|.|.+.|+|++.++..... ......|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~---~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT---FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE---EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 46899999999999999999999865432 223468999999999999999999999998877666554
No 59
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.42 E-value=9e-13 Score=93.76 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=57.9
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccc-c---ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLER-D---ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|.+.|+|++..+...... . ......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999887632111 1 1123347999999999999999999999999999988865
No 60
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.42 E-value=9.6e-13 Score=94.81 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=62.6
Q ss_pred CcEEEEEEEee--cCCCeEEEEeCCccCCCc--cccccc----CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 290 EPLTLECEATG--RPMPTVSWVKYIAPFDRN--LERDEL----TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 290 ~~v~l~C~~~g--~p~~~i~W~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
+++.|.|.+.+ .+++.|.|+++|+.+... ...... ...+.|.|.+++..|+|.|+|.|.|..+..+.+..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46899999987 446799999999998621 111111 3456899999999999999999999999999999999
Q ss_pred EecCC
Q psy17058 362 VEHRP 366 (471)
Q Consensus 362 V~~~p 366 (471)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99875
No 61
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.42 E-value=1.8e-12 Score=95.81 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=64.0
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVA 361 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 361 (471)
++.+.+|+++.|.|.+.|. .|.+.|++++..+.... ........+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN 89 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence 4578899999999999999 89999999998765432 1223345689999999999999999999999986 4467776
Q ss_pred E
Q psy17058 362 V 362 (471)
Q Consensus 362 V 362 (471)
|
T Consensus 90 V 90 (91)
T cd05740 90 V 90 (91)
T ss_pred e
Confidence 6
No 62
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.41 E-value=1.5e-12 Score=92.43 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=56.7
Q ss_pred EEEEEEeecCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 293 TLECEATGRPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 293 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
.|.|.+.|+|.|+++|+|+|..+...... ......+.|.|.++..+|+|.|+|.|+|..|..++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999999998643221 1123456899999999999999999999999998887764
No 63
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.41 E-value=8.8e-13 Score=92.33 Aligned_cols=68 Identities=24% Similarity=0.529 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 360 (471)
+.|.|.+.|.|.|.+.|+|++..+..... ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGK-FHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCC-EEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999987754322 123345789999999999999999999999999888776
No 64
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.40 E-value=1.9e-12 Score=96.54 Aligned_cols=79 Identities=20% Similarity=0.468 Sum_probs=65.5
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc--c-----cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--I-----AGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~--~-----~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
||.+...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+.... . ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 678888899999999999999999 9999999999999 54543321 1 3468999999999999999999999
Q ss_pred CCceeeeeE
Q psy17058 163 QGNVFQDYA 171 (471)
Q Consensus 163 ~~~~~~~~~ 171 (471)
.|. .....
T Consensus 82 ~G~-~~~~~ 89 (92)
T cd05747 82 EGK-QEAQF 89 (92)
T ss_pred CCC-EeEEE
Confidence 887 44333
No 65
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.40 E-value=2.4e-12 Score=89.66 Aligned_cols=68 Identities=29% Similarity=0.555 Sum_probs=55.5
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 360 (471)
|+++.|.|.+.|.|.|.+.|++++..+..... .......|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~--~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE--MPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccc--eecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999988754332 12234578888874 7999999999999998887766
No 66
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=3.6e-12 Score=95.01 Aligned_cols=83 Identities=23% Similarity=0.456 Sum_probs=63.6
Q ss_pred cEEEcCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCCCC-Cc--c------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058 93 EVQVTPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQLPP-NM--I------AGETLIINGITKADEGVYICSIQN 161 (471)
Q Consensus 93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~~~-~~--~------~~~~L~i~~v~~~D~G~Y~C~~~~ 161 (471)
.+.+.|....+.+|+++.|.|. .+.|. +.++|++.++..+.. .. . ..++|+|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 2 QVDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred cEEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 3667888889999999999999 88885 699999843654432 11 1 136899999999999999999999
Q ss_pred cCCceeeeeEEEEE
Q psy17058 162 AQGNVFQDYASIQV 175 (471)
Q Consensus 162 ~~~~~~~~~~~l~v 175 (471)
..+.....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 87332555555554
No 67
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.39 E-value=2.2e-12 Score=92.41 Aligned_cols=73 Identities=25% Similarity=0.469 Sum_probs=57.5
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE--EEEEEEEec
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE--KVITVAVEH 364 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~ 364 (471)
++|.|.+.|.|.|.+.|+|+|..+..... .........|.|.++..+|+|.|+|.|.|..|... ..+.|.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 57999999999999999999988754321 11223346899999999999999999999999874 456666643
No 68
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.2e-12 Score=92.15 Aligned_cols=71 Identities=31% Similarity=0.520 Sum_probs=56.9
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCC-C--cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFD-R--NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~-~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|.++|++++.... . ............|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4689999999999999999986422 1 111112234468999999999999999999999999999998887
No 69
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=3.1e-12 Score=95.29 Aligned_cols=82 Identities=23% Similarity=0.511 Sum_probs=67.6
Q ss_pred CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee---eceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM 264 (471)
Q Consensus 188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 264 (471)
+....+.+|+.+.|.|.+ .+.|.+.+.|+|++..+....++.+... ...|.|.+++.+|+|.|+|.+.|..|..+.
T Consensus 8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 345678899999999999 8899999999999987666555555422 347999999999999999999999998888
Q ss_pred EEEEEE
Q psy17058 265 NAYIHV 270 (471)
Q Consensus 265 ~~~l~V 270 (471)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 777654
No 70
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=1.6e-12 Score=91.11 Aligned_cols=69 Identities=29% Similarity=0.554 Sum_probs=57.6
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|.+.|++++..+..... .......|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRA--EILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcE--EEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999876643322 1224568999999999999999999999999998888865
No 71
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=3e-12 Score=95.00 Aligned_cols=78 Identities=31% Similarity=0.426 Sum_probs=63.1
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCC-------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDR-------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
|+.+.|.|.+.|.|.|.+.|++++..+.. ..........+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 68899999999999999999998765310 01111222346799999999999999999999999999999999
Q ss_pred EecCC
Q psy17058 362 VEHRP 366 (471)
Q Consensus 362 V~~~p 366 (471)
|.+..
T Consensus 81 V~~~~ 85 (90)
T cd05726 81 VTDVI 85 (90)
T ss_pred Eeecc
Confidence 98754
No 72
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.39 E-value=4.6e-12 Score=95.19 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=68.0
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
...+..|+.+.|.|.+ .+.|.+.+.|++++..+... .++......+.|.|.+++.+|.|.|+|.|.|..|....++.|
T Consensus 12 ~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 12 NATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred ceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 3467899999999999 78999999999998775443 333333445679999999999999999999999999888888
Q ss_pred EEEe
Q psy17058 269 HVLT 272 (471)
Q Consensus 269 ~V~~ 272 (471)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8864
No 73
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.39 E-value=1.6e-11 Score=99.36 Aligned_cols=116 Identities=22% Similarity=0.385 Sum_probs=79.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeC
Q psy17058 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRP 219 (471)
Q Consensus 141 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~ 219 (471)
+|+|.+++.+|+|.|.|.+.+..+. ......|.| ..+|.+.+.+.. ....+|+.++|.|.+.+..|. +.++|+++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v--~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSV--SEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEE--ecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 6999999999999999999887665 444444444 467877766543 234478999999999555565 59999999
Q ss_pred CCCCCc----CCCc-----e-----EEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 220 DNDGKF----GPDV-----E-----VYQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 220 ~~~~~~----~~~~-----~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
+..... .... . .+...+.|.+......+.+.|+|.+.+...
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 864221 0111 0 111134566666666677899999987643
No 74
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2e-12 Score=92.18 Aligned_cols=73 Identities=23% Similarity=0.506 Sum_probs=58.9
Q ss_pred CCcEEEEEEEeecCCCeEEEEe-CCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVK-YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
|+.+.|.|.+.|.|.|.+.|++ ++..+..... .......+|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR-TLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe-EEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 4554433221 22234568999999999999999999999999988888765
No 75
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.38 E-value=1.9e-12 Score=91.49 Aligned_cols=71 Identities=35% Similarity=0.609 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 363 (471)
+.|.|.+.|.|.|.+.|++++..+..... ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRT-KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCce-eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 47899999999999999999877643211 123345689999999999999999999999999999888773
No 76
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.38 E-value=3.2e-12 Score=94.23 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=61.3
Q ss_pred cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----c---CcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----A---GETLIINGITKADEGVYICSIQNAQG 164 (471)
Q Consensus 93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~---~~~L~i~~v~~~D~G~Y~C~~~~~~~ 164 (471)
.+.+.|.+..+.+|+++.|.|. .+.|. .+.|+++++..+..... . ...|.|.++..+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 2 QVSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred eEEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 3567788899999999999999 88887 89999865654432221 2 23899999999999999999999988
Q ss_pred ceeeeeEE
Q psy17058 165 NVFQDYAS 172 (471)
Q Consensus 165 ~~~~~~~~ 172 (471)
........
T Consensus 81 ~~~~~~i~ 88 (92)
T cd05866 81 QTQEATVV 88 (92)
T ss_pred cEEEEEEE
Confidence 73333333
No 77
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.38 E-value=4.7e-12 Score=94.44 Aligned_cols=73 Identities=25% Similarity=0.473 Sum_probs=56.5
Q ss_pred CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceE-EEEEE
Q psy17058 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEE-KVITV 360 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l 360 (471)
+|+.+.|.|.+.|.|.|+++|++++..+............+.|.|.++. .+|+|.|+|.|.|..|... +.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 5789999999999999999999999888532211122234678898875 6999999999999999874 34443
No 78
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.37 E-value=3.4e-12 Score=91.81 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=60.1
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
|+++.|.|.+.|.|.|.+.|++++..+....+ .........|.|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 68899999999999999999999877654322 122334578999999999999999999999998877655544
No 79
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.37 E-value=3.9e-12 Score=91.59 Aligned_cols=77 Identities=22% Similarity=0.454 Sum_probs=63.1
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
...+.+|+.+.|.|.+.+. .+.+.|+|+|..+....... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTR--ITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEE--EeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 4577899999999999986 56899999998886543211 12458999999999999999999999999888877764
No 80
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.37 E-value=4.8e-12 Score=93.26 Aligned_cols=80 Identities=36% Similarity=0.593 Sum_probs=63.5
Q ss_pred cEEecCCCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy17058 283 YVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITV 360 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 360 (471)
...+.+|+++.|.|.+ .|.|.+.+.|++++..+............+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 4678899999999998 78999999999999887643221222335789999999999999999999999986 445555
Q ss_pred EE
Q psy17058 361 AV 362 (471)
Q Consensus 361 ~V 362 (471)
.|
T Consensus 85 ~V 86 (86)
T cd05724 85 SV 86 (86)
T ss_pred EC
Confidence 43
No 81
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.37 E-value=2.8e-12 Score=93.89 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=63.9
Q ss_pred EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDY 170 (471)
Q Consensus 95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 170 (471)
...|.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+..... .++.|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~ 80 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYAS 80 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEEC-CEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEE
Confidence 44677889999999999999 8999999999999 555543222 5678999999999999999999999887 5555
Q ss_pred EEEE
Q psy17058 171 ASIQ 174 (471)
Q Consensus 171 ~~l~ 174 (471)
+.|.
T Consensus 81 ~~l~ 84 (85)
T cd05728 81 AELA 84 (85)
T ss_pred EEEE
Confidence 5444
No 82
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.36 E-value=5.9e-12 Score=93.06 Aligned_cols=77 Identities=26% Similarity=0.500 Sum_probs=60.3
Q ss_pred CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEE
Q psy17058 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASI 173 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l 173 (471)
+..+.+.+|++++|.|. .+. .+.+.|++++......+.. .+..|+|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 44678999999999999 777 8999999994333333222 456899999999999999999999998755555555
Q ss_pred EE
Q psy17058 174 QV 175 (471)
Q Consensus 174 ~v 175 (471)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 54
No 83
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.36 E-value=2.3e-12 Score=95.44 Aligned_cols=75 Identities=23% Similarity=0.478 Sum_probs=58.0
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCc----cCCCc-c----------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIA----PFDRN-L----------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~----~~~~~-~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
|+.+.|.|.+.|.|.|.|+|+|++. .+... . ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 6789999999999999999999642 11100 0 0001123458999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy17058 354 EEKVITVAVE 363 (471)
Q Consensus 354 ~~~~~~l~V~ 363 (471)
...++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999998873
No 84
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.36 E-value=6e-12 Score=95.83 Aligned_cols=88 Identities=30% Similarity=0.603 Sum_probs=63.0
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCc----ccccccCcee---EEEEe--ecCCCCCeEEE
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----LERDELTSRA---VYTIA--SVRESDAGQYK 344 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~---~l~i~--~~~~~d~G~Y~ 344 (471)
|.+...+ ....+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .........+ .+.+. .++.+|+|.|+
T Consensus 2 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 5555554 3578899999999999999999999999999887641 1101111112 22222 23689999999
Q ss_pred EEEEcCCCc-eEEEEEEEE
Q psy17058 345 CIGKNSAGT-EEKVITVAV 362 (471)
Q Consensus 345 C~a~n~~g~-~~~~~~l~V 362 (471)
|.|.|..|. .++.+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 567777766
No 85
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.36 E-value=7.6e-12 Score=93.37 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE-EEEE
Q psy17058 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK-VITV 360 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 360 (471)
.|+++.|.|.+.|+|.|.++|+++|..+............+.|.|.++. ..|+|.|+|.|+|..|.... .+.|
T Consensus 18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 18 PEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 3568999999999999999999999887532211122234678888765 69999999999999998743 4544
No 86
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.36 E-value=3.5e-12 Score=90.19 Aligned_cols=71 Identities=28% Similarity=0.535 Sum_probs=58.7
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee-c--eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL-G--VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
+.|.|.+ .+.|.|.+.|+|++..+... .++.+...+ + +|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4799999 89999999999999876543 444444322 2 7999999999999999999999999988888765
No 87
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=6.7e-12 Score=89.79 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=60.8
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
|+.++|.|.+ .+.|.+.++|++++..+..... .......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6889999999 7889999999999876543321 122233678999999999999999999999999888888876
No 88
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.35 E-value=5.5e-12 Score=90.79 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=56.6
Q ss_pred EEEEEEeecCCCeEEEEeCCccCCCccccc---------ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 293 TLECEATGRPMPTVSWVKYIAPFDRNLERD---------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 293 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
.|.|.+.|+|.|+++|+|+|..+....... .....+.|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 378999999999999999999886432110 123356899999999999999999999999999887765
No 89
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.35 E-value=9.8e-12 Score=90.92 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=66.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
...+.+|+.+.|.|.+ .+.|.+.+.|+|++..+... .++.+.. ..+.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 4567899999999999 89999999999999876543 2444432 246799999999999999999999999988887
Q ss_pred EEEE
Q psy17058 267 YIHV 270 (471)
Q Consensus 267 ~l~V 270 (471)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7764
No 90
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.35 E-value=5.3e-12 Score=89.68 Aligned_cols=72 Identities=33% Similarity=0.598 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCc-ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRN-LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE 363 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 363 (471)
++|.|.+.|+|.|.+.|++++..+... .........+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 479999999999999999998877521 111222345679999999999999999999999985 677777763
No 91
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.34 E-value=8e-12 Score=92.14 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=61.4
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCcccc--cccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRNLER--DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVI 358 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~ 358 (471)
+..+.+|+++.|.|.+.|.|. .+.|+++ +..+....+. ........|.|.++..+|+|.|+|.|+|..|.. .+++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 467889999999999999998 9999985 5554432221 122334589999999999999999999999986 6667
Q ss_pred EEEE
Q psy17058 359 TVAV 362 (471)
Q Consensus 359 ~l~V 362 (471)
.|.+
T Consensus 88 ~l~~ 91 (92)
T cd05866 88 VLEI 91 (92)
T ss_pred EEEE
Confidence 6655
No 92
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=7.8e-12 Score=88.00 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=59.6
Q ss_pred eEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
+++|.|.+ .|.|.+.++|+|++..+.....+.+.. .+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVK-EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEe-cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999 889999999999998755555555444 567889999999999999999999999888888764
No 93
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=5.7e-12 Score=89.38 Aligned_cols=73 Identities=32% Similarity=0.516 Sum_probs=62.4
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
|+.+.|.|.+ .+.|.+.++|++++..+....++.+.. .+.|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIWP-DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEECC-CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999 788999999999998765555555444 568999999999999999999999999888887764
No 94
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.34 E-value=9.6e-12 Score=92.26 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=66.5
Q ss_pred cCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceE--EeeeceEEEeccCCCCCeEEEEEEEcCCCceE
Q psy17058 186 HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--YQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263 (471)
Q Consensus 186 ~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 263 (471)
.++....+.+|+.+.|.|.+ .+.|.+.++|++++..+........ ......|.|.++..+|.|.|+|.|.|..|...
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 34445568899999999999 7899999999999986543322211 12245799999999999999999999999988
Q ss_pred EEEEEEE
Q psy17058 264 MNAYIHV 270 (471)
Q Consensus 264 ~~~~l~V 270 (471)
.++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8887764
No 95
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.33 E-value=3.9e-12 Score=94.71 Aligned_cols=82 Identities=28% Similarity=0.581 Sum_probs=67.1
Q ss_pred CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
|.|...|.++.+.+|+++.|.|. .+.|.+.+.|+++ +..+..... ....|.|.+++.+|+|.|+|.+.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 56778889999999999999999 7778999999999 655543222 56789999999999999999999987
Q ss_pred CceeeeeEEEEE
Q psy17058 164 GNVFQDYASIQV 175 (471)
Q Consensus 164 ~~~~~~~~~l~v 175 (471)
|. ......|.|
T Consensus 80 g~-~~~~~~l~V 90 (90)
T PF07679_consen 80 GE-ATASVNLTV 90 (90)
T ss_dssp EE-EEEEEEEEE
T ss_pred CE-EEEEEEEEC
Confidence 76 555555443
No 96
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.32 E-value=1e-11 Score=92.26 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=60.6
Q ss_pred cEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCC--Ccc------cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP--NMI------AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 93 ~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~--~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
.+.+.|....+.+|+++.|.|. .+.|. .+.|++.++..+.. +.. ..++|+|.+++.+|+|.|+|.|.|..
T Consensus 2 ~v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 2 QVDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred eEEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 4678889999999999999999 67764 99999854554432 111 23589999999999999999999986
Q ss_pred CceeeeeEEE
Q psy17058 164 GNVFQDYASI 173 (471)
Q Consensus 164 ~~~~~~~~~l 173 (471)
|.....+..|
T Consensus 81 g~~~~~sv~l 90 (92)
T cd04977 81 GTESEATVNL 90 (92)
T ss_pred CCcceeEEEE
Confidence 5534444433
No 97
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.32 E-value=1.7e-11 Score=87.97 Aligned_cols=73 Identities=26% Similarity=0.531 Sum_probs=58.3
Q ss_pred ccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE-EEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VIT 359 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~ 359 (471)
.++.+.+|+++.|.|.+.|.|.| +|.|++++..+... .....+.|.|..+ .|+|.|.|.|+|..|.... .+.
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~ 79 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT 79 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence 35788999999999999999999 79999999887541 1234468888887 4789999999999997653 444
Q ss_pred E
Q psy17058 360 V 360 (471)
Q Consensus 360 l 360 (471)
|
T Consensus 80 ~ 80 (81)
T cd05749 80 V 80 (81)
T ss_pred e
Confidence 3
No 98
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.32 E-value=1.4e-11 Score=89.96 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=61.4
Q ss_pred CeEEEEEEccCCCCCC--eEEEEeCCCCCCcCC---CceE---EeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 197 DRADIQCVLEAGEPSP--TQTWIRPDNDGKFGP---DVEV---YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 197 ~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~---~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
+.++|.|.+ .+.|.+ .++|++++..+.... ++.. ....+.|.|.+++..|+|.|+|.|.|..|..+.++.|
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 468999999 777765 689999987754322 2211 1235689999999999999999999999999999999
Q ss_pred EEEeCC
Q psy17058 269 HVLTLP 274 (471)
Q Consensus 269 ~V~~~p 274 (471)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998765
No 99
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.32 E-value=8.2e-12 Score=88.48 Aligned_cols=71 Identities=25% Similarity=0.395 Sum_probs=58.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
++|.|.+ .|.|.|.++|+|++..+... .++.+...+ ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999 89999999999998876543 334443322 16999999999999999999999999988888765
No 100
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.32 E-value=2.1e-11 Score=89.64 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=64.5
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe------eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
|+.++|.|.+ .+.|.+.+.|+|++..+... .++.+.. ..+.|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 7899999999 78899999999998765433 2333321 12579999999999999999999999999999999
Q ss_pred EEEeCCc
Q psy17058 269 HVLTLPA 275 (471)
Q Consensus 269 ~V~~~p~ 275 (471)
.|..+|.
T Consensus 80 ~V~~~P~ 86 (88)
T cd05735 80 TVQEPPD 86 (88)
T ss_pred EEeCCCC
Confidence 9987663
No 101
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.32 E-value=1.7e-11 Score=92.29 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=63.5
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-------cc-----cCcEEEEcCCCCCCCeEEEE
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MI-----AGETLIINGITKADEGVYIC 157 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-------~~-----~~~~L~i~~v~~~D~G~Y~C 157 (471)
.|.|...+....+..|+.++|.|. .+.|.+.++|+++ +..+... .. ..+.|.|.+++.+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~-~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTS-TRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEEC-CccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 466777777766777899999999 8889999999998 4443221 10 22589999999999999999
Q ss_pred EEEecCCceeeeeEEEE
Q psy17058 158 SIQNAQGNVFQDYASIQ 174 (471)
Q Consensus 158 ~~~~~~~~~~~~~~~l~ 174 (471)
.|.|..|. ......|.
T Consensus 81 ~A~N~~G~-~~~~~~l~ 96 (97)
T cd05869 81 TASNTIGQ-DSQSMYLE 96 (97)
T ss_pred EEecCCCC-eeEEEEEE
Confidence 99999998 55555544
No 102
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.32 E-value=1.7e-11 Score=88.23 Aligned_cols=72 Identities=31% Similarity=0.543 Sum_probs=56.6
Q ss_pred CCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEE
Q psy17058 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYAS 172 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~ 172 (471)
|.+..+.+|+++.|.|. .+. .+.+.|+|+ +..+..... .+..|.|.+++.+|+|.|+|.+.|..|. ......
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~ 76 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFS 76 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEE
Confidence 56778999999999999 554 568999999 666654322 4568999999999999999999998776 433333
No 103
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.31 E-value=1.3e-11 Score=88.95 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=62.6
Q ss_pred CeEEEEEEccC-CCCCCeEEEEeCCCCCCcC---CCceEE---eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 197 DRADIQCVLEA-GEPSPTQTWIRPDNDGKFG---PDVEVY---QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269 (471)
Q Consensus 197 ~~~~L~C~~~~-~~p~~~v~W~~~~~~~~~~---~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 269 (471)
+++.|.|.+.. +.+.+.+.|+++|..+... .++... ...+.|.|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46899999943 4557899999999887542 122221 1356899999999999999999999999999999999
Q ss_pred EEeCC
Q psy17058 270 VLTLP 274 (471)
Q Consensus 270 V~~~p 274 (471)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 104
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.31 E-value=1.8e-11 Score=92.36 Aligned_cols=82 Identities=18% Similarity=0.419 Sum_probs=62.2
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCC-CCCCCC-------Ccc-----cCcEEEEcCCCCCCCeEEE
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDN-QEQLPP-------NMI-----AGETLIINGITKADEGVYI 156 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~-~~~~~~-------~~~-----~~~~L~i~~v~~~D~G~Y~ 156 (471)
+|.+. .+.+..+.+|++++|.|. .+.|.+.+.|++.. +..+.. +.. ....|+|.+++.+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 35554 367899999999999999 89999999999962 222211 111 2358999999999999999
Q ss_pred EEEEecCCceeeeeEEEE
Q psy17058 157 CSIQNAQGNVFQDYASIQ 174 (471)
Q Consensus 157 C~~~~~~~~~~~~~~~l~ 174 (471)
|.|.|..|. ...++.|.
T Consensus 81 C~A~N~~G~-~~~~~~l~ 97 (98)
T cd05870 81 CEAASRIGG-HQKSMYLD 97 (98)
T ss_pred EEEeccCCc-ceeEEEEe
Confidence 999999987 55454443
No 105
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.31 E-value=1e-11 Score=86.59 Aligned_cols=70 Identities=24% Similarity=0.254 Sum_probs=55.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
+.|.|.+.|.|.|++.|+|++.++....... .....+|.|.+++.+|+|.|+|.|.|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY-HVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEE-EeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4689999999999999999998876432211 223458999999999999999999998776666655543
No 106
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.31 E-value=1.3e-11 Score=92.88 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=66.5
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE--------eeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY--------QELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
...+..|+.+.|.|.+ .+.|.|.+.|+|++..+......... ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 4567789999999999 88999999999999886644332221 11357999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy17058 262 EVMNAYIHVL 271 (471)
Q Consensus 262 ~~~~~~l~V~ 271 (471)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888888875
No 107
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.31 E-value=9.1e-12 Score=85.51 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=55.4
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
++|.|.+ .+.|.|.+.|+|+|..+... ...+.|.|.++..+|+|.|+|.|+|..|..+.++.+.+.
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4799999 89999999999999875421 125689999999999999999999999987777777664
No 108
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.31 E-value=1.3e-11 Score=88.09 Aligned_cols=75 Identities=23% Similarity=0.488 Sum_probs=61.6
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCC-ceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
|+.++|.|.+ .+.|.++++|+|++..+..... ......++.|.|.+++..|+|.|+|.|+|..|....++.|.|+
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6789999999 8999999999999887643322 1122235689999999999999999999999999999988873
No 109
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.31 E-value=1e-11 Score=92.12 Aligned_cols=74 Identities=22% Similarity=0.434 Sum_probs=57.6
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCC----ccCCCcc--cc---------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYI----APFDRNL--ER---------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~----~~~~~~~--~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
|+++.|.|.+.|.|.|.++|++++ ..+.... .. ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 688999999999999999999853 2221110 00 00112368999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy17058 354 EEKVITVAV 362 (471)
Q Consensus 354 ~~~~~~l~V 362 (471)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999998887
No 110
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.30 E-value=1.7e-11 Score=90.28 Aligned_cols=76 Identities=29% Similarity=0.512 Sum_probs=59.9
Q ss_pred cCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCC-Cc--c--cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058 97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPP-NM--I--AGETLIINGITKADEGVYICSIQNAQGNVFQD 169 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~-~~--~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~ 169 (471)
.|....+.+|+++.|.|. .+.|.+.+.|+++ +..+.. .. . ..+.|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKD-GQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEEC-CEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 467888999999999998 5788999999998 544433 11 1 45789999999999999999999998874444
Q ss_pred eEEE
Q psy17058 170 YASI 173 (471)
Q Consensus 170 ~~~l 173 (471)
.+.+
T Consensus 81 ~~~l 84 (86)
T cd05724 81 AARL 84 (86)
T ss_pred eEEE
Confidence 4443
No 111
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.30 E-value=2.2e-11 Score=89.46 Aligned_cols=79 Identities=24% Similarity=0.482 Sum_probs=64.0
Q ss_pred eeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 191 ~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
+.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+....+. ........|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 356789999999999 78899999999998875543322 22223457999999999999999999999999888888
Q ss_pred EEE
Q psy17058 268 IHV 270 (471)
Q Consensus 268 l~V 270 (471)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 112
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.30 E-value=2.1e-11 Score=87.41 Aligned_cols=74 Identities=30% Similarity=0.473 Sum_probs=61.6
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
|+.++|.|.+ .+.|.+.+.|++++..+...... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7889999999 88999999999998765443322 23334678999999999999999999999999988888876
No 113
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.30 E-value=1.8e-11 Score=87.67 Aligned_cols=73 Identities=33% Similarity=0.639 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
+.|.|.+.|.|.|.+.|+|++..+.... ..........|.|.++..+|.|.|+|.|.|..|..+.++.|.|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 3689999999999999999988775331 112233445799999999999999999999999999999998864
No 114
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.29 E-value=1.8e-11 Score=87.84 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=58.6
Q ss_pred EEcCCceeecCCCcEEEEee-CCCCCC-eEEEEeCCCCCCCCC-cccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058 95 QVTPRQQSAPEGSQVTIECK-SNDPSA-TIKWSKDNQEQLPPN-MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA 171 (471)
Q Consensus 95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~-~v~W~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~ 171 (471)
...|.++.+.+|+++.|.|. .+.|.+ .|.|+++ +..+... ....+.|.|..+ .|+|.|.|.|.|..|...+..+
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~-g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG-GSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC-CEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 45678899999999999999 999999 7999999 6555431 124578999887 4889999999999987443333
No 115
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.29 E-value=3.8e-11 Score=89.58 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=61.7
Q ss_pred CcEEEcCCceeecCC---CcEEEEee-CCCCCCeEEEEeCCCCCCCCCc--c---cCcEEEEcCCC-CCCCeEEEEEEEe
Q psy17058 92 NEVQVTPRQQSAPEG---SQVTIECK-SNDPSATIKWSKDNQEQLPPNM--I---AGETLIINGIT-KADEGVYICSIQN 161 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G---~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~--~---~~~~L~i~~v~-~~D~G~Y~C~~~~ 161 (471)
|.+..+|.++.+.+| +++.|.|. .+.|.+.++|+++ +..+.... . .++.|.|.++. ..|+|.|+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN-GTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC-CEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 566777888877666 57999999 8999999999999 65554211 1 45789998865 5999999999999
Q ss_pred cCCceeeeeEEE
Q psy17058 162 AQGNVFQDYASI 173 (471)
Q Consensus 162 ~~~~~~~~~~~l 173 (471)
..|...+..+.|
T Consensus 81 ~~G~~~s~~a~l 92 (94)
T cd05850 81 RCGTVVSREANL 92 (94)
T ss_pred CcCcEEEEEEEE
Confidence 999744444433
No 116
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.29 E-value=2.6e-11 Score=91.02 Aligned_cols=80 Identities=26% Similarity=0.523 Sum_probs=61.5
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccc-ccccCceeEEEEeec-----CCCCCeEEEEEEEcC-CCce-
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE-RDELTSRAVYTIASV-----RESDAGQYKCIGKNS-AGTE- 354 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~- 354 (471)
...+.+|+++.|.|.+.|.|.|.+.|+|++..+..... .......+.+.|.++ ..+|.|.|+|.|.|. .|..
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 45677899999999999999999999999988764321 112223455777766 588999999999999 9987
Q ss_pred EEEEEEEE
Q psy17058 355 EKVITVAV 362 (471)
Q Consensus 355 ~~~~~l~V 362 (471)
++.+.|.|
T Consensus 88 s~~~~l~v 95 (95)
T cd05722 88 SRTARLTV 95 (95)
T ss_pred EeeeEEeC
Confidence 55676654
No 117
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.29 E-value=1.3e-11 Score=91.69 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=63.7
Q ss_pred cEEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceE
Q psy17058 283 YVSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 355 (471)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... ...........|.|.++..+|+|.|+|.++|..|..+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 346778999999999998 688899999998764321 1111122357899999999999999999999999999
Q ss_pred EEEEEEE
Q psy17058 356 KVITVAV 362 (471)
Q Consensus 356 ~~~~l~V 362 (471)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 8888765
No 118
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.29 E-value=3.8e-11 Score=87.41 Aligned_cols=75 Identities=23% Similarity=0.428 Sum_probs=59.0
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC--ceEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITV 360 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 360 (471)
|+++.|.|.+.+.|.+.+.|++.++...... ........++|.|.+++.+|+|.|+|.|.|..+ ..++++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432211 111122467899999999999999999999876 67788888
Q ss_pred EEe
Q psy17058 361 AVE 363 (471)
Q Consensus 361 ~V~ 363 (471)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 875
No 119
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=1.7e-11 Score=89.12 Aligned_cols=74 Identities=30% Similarity=0.551 Sum_probs=57.9
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCC-----Ccc--cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFD-----RNL--ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~-----~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
|+.+.|.|.+.|.|.|.+.|++++..-. ... ..........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7889999999999999999999742111 000 001122346899999999999999999999999999998887
Q ss_pred E
Q psy17058 362 V 362 (471)
Q Consensus 362 V 362 (471)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 120
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.29 E-value=2.4e-11 Score=88.83 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=60.2
Q ss_pred CCcEEEEEEEeec--CCCeEEEEeCCccCCCccc-------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 289 GEPLTLECEATGR--PMPTVSWVKYIAPFDRNLE-------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 289 g~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
|+.+.|.|.+.|. |.+.+.|.+++..+..... .......++|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 7889999988765532211 011234578999999999999999999999999999888
Q ss_pred EEEe
Q psy17058 360 VAVE 363 (471)
Q Consensus 360 l~V~ 363 (471)
|.|.
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8763
No 121
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.28 E-value=2.8e-11 Score=89.89 Aligned_cols=82 Identities=24% Similarity=0.497 Sum_probs=66.1
Q ss_pred CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee---eceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy17058 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM 264 (471)
Q Consensus 188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 264 (471)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++..... ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 8 p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 345678899999999998 7889999999999887655544433221 237999999999999999999999999888
Q ss_pred EEEEEE
Q psy17058 265 NAYIHV 270 (471)
Q Consensus 265 ~~~l~V 270 (471)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 877754
No 122
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.28 E-value=3.1e-11 Score=90.94 Aligned_cols=81 Identities=22% Similarity=0.442 Sum_probs=62.4
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-------cc-----cCcEEEEcCCCCCCCeEEEE
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MI-----AGETLIINGITKADEGVYIC 157 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-------~~-----~~~~L~i~~v~~~D~G~Y~C 157 (471)
+|.|. .+.+..+.+|+++.|.|. .+.|.+.+.|+++ +..+... .. ....|+|.+++.+|+|.|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 79 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRA-TRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC 79 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEEC-CcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence 45664 455788999999999999 8889999999998 4433221 11 23589999999999999999
Q ss_pred EEEecCCceeeeeEEEE
Q psy17058 158 SIQNAQGNVFQDYASIQ 174 (471)
Q Consensus 158 ~~~~~~~~~~~~~~~l~ 174 (471)
.|.|..|. ...++.|.
T Consensus 80 ~a~N~~G~-~~~s~~l~ 95 (96)
T cd05732 80 EASNRIGG-DQQSMYLE 95 (96)
T ss_pred EEEeCCCC-cEEEEEEe
Confidence 99999988 55444443
No 123
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=4.8e-11 Score=88.56 Aligned_cols=80 Identities=29% Similarity=0.506 Sum_probs=60.0
Q ss_pred CcEEEcCCceeecCCC---cEEEEee-CCCCCCeEEEEeCCCCCCCC-Ccc---cCcEEEEcCCC-CCCCeEEEEEEEec
Q psy17058 92 NEVQVTPRQQSAPEGS---QVTIECK-SNDPSATIKWSKDNQEQLPP-NMI---AGETLIINGIT-KADEGVYICSIQNA 162 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~---~v~l~C~-~~~p~~~v~W~~~~~~~~~~-~~~---~~~~L~i~~v~-~~D~G~Y~C~~~~~ 162 (471)
|.|..+|....+.++. .+.|.|. .+.|.+.++|+|+ +..+.. ... .++.|.|.++. .+|+|.|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~-~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKN-NLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEEC-CEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 5666677776665544 7999999 9999999999999 544432 111 56789999985 68999999999999
Q ss_pred CCceeeeeEE
Q psy17058 163 QGNVFQDYAS 172 (471)
Q Consensus 163 ~~~~~~~~~~ 172 (471)
.|...+..+.
T Consensus 81 ~G~~~s~~a~ 90 (93)
T cd05849 81 YGKVRSREAT 90 (93)
T ss_pred cceEEEccEE
Confidence 9874443333
No 124
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.28 E-value=1.8e-11 Score=87.51 Aligned_cols=68 Identities=25% Similarity=0.455 Sum_probs=55.6
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCccc-----ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLE-----RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
+.|.|.+.| .|.|.+.|++++..+..... .........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 99999999999988764322 112234578999999999999999999999999887764
No 125
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.27 E-value=3.9e-11 Score=89.47 Aligned_cols=76 Identities=21% Similarity=0.477 Sum_probs=59.0
Q ss_pred CcEEEcCCceeec---CCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCc----c-cCcEEEEcCCC-CCCCeEEEEEEEe
Q psy17058 92 NEVQVTPRQQSAP---EGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM----I-AGETLIINGIT-KADEGVYICSIQN 161 (471)
Q Consensus 92 ~~v~~~p~~~~v~---~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~----~-~~~~L~i~~v~-~~D~G~Y~C~~~~ 161 (471)
|.|...|.++.+. +|+++.|.|. .+.|.+.++|+|+ +..+.... . .++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN-GTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC-CeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 5566677776554 4789999999 9999999999999 55554211 1 55789999985 6999999999999
Q ss_pred cCCceee
Q psy17058 162 AQGNVFQ 168 (471)
Q Consensus 162 ~~~~~~~ 168 (471)
..|...+
T Consensus 81 ~~G~~~S 87 (94)
T cd05848 81 SIGSILS 87 (94)
T ss_pred CCCeEEe
Confidence 9987333
No 126
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.27 E-value=3.6e-11 Score=91.52 Aligned_cols=84 Identities=27% Similarity=0.555 Sum_probs=62.4
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-----cc----cCcEE---EE--cCCCCCCCeEE
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-----MI----AGETL---II--NGITKADEGVY 155 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-----~~----~~~~L---~i--~~v~~~D~G~Y 155 (471)
||.|...|.+..+.+|+++.|.|. .+.|.+.+.|+|+ +..+... .. ..+.+ .+ ..++.+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN-GQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC-CEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 578888999999999999999999 8899999999999 5544331 10 22222 22 23478999999
Q ss_pred EEEEEecCCceeeeeEEEEE
Q psy17058 156 ICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 156 ~C~~~~~~~~~~~~~~~l~v 175 (471)
+|.|.|..|...+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 99999999874555555544
No 127
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.27 E-value=2.8e-11 Score=88.28 Aligned_cols=78 Identities=28% Similarity=0.458 Sum_probs=62.7
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
....|+.++|.|.+ .+.|.+.+.|++++..+..............|.|.+++.+|+|.|+|.+.|..|..+.++.|.|
T Consensus 5 ~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45579999999999 7888999999999987654433333333467999999999999999999999998877777654
No 128
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.27 E-value=4.7e-11 Score=88.70 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=59.6
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEe-CCccCCCccc---ccccCceeEEEEeecCCCCCeEEEEEEEcCCC-ceEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVK-YIAPFDRNLE---RDELTSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKV 357 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~ 357 (471)
...+..|+++.|.|.+.|.|. .+.|++ ++..+..... .......++|+|.+++.+|+|.|+|.|.|..| ....+
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 467889999999999999974 999998 4544432111 11223457899999999999999999999965 45667
Q ss_pred EEEEE
Q psy17058 358 ITVAV 362 (471)
Q Consensus 358 ~~l~V 362 (471)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 76654
No 129
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.27 E-value=4.4e-11 Score=90.25 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=61.9
Q ss_pred cEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcc--cccc------cCceeEEEEeecCC-CCCeEEEEEEEcCCC
Q psy17058 283 YVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNL--ERDE------LTSRAVYTIASVRE-SDAGQYKCIGKNSAG 352 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~--~~~~------~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g 352 (471)
...+.+|+.+.|.|.+.|.|.| .+.|++++..+.... +... ....++|.|.++.. +|.|.|+|.|.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 4578899999999999999999 699999987765321 1000 12236899999998 458999999999999
Q ss_pred ceEEEEEE
Q psy17058 353 TEEKVITV 360 (471)
Q Consensus 353 ~~~~~~~l 360 (471)
.....+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 99888776
No 130
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.27 E-value=1.8e-11 Score=87.28 Aligned_cols=66 Identities=24% Similarity=0.496 Sum_probs=55.3
Q ss_pred CcEEEcCCceeecCCCcEEEEee-CCCCC-CeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECK-SNDPS-ATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~-~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
|.+.+.|+...+.+|++++|.|. .+.|. ..+.|+++ +..+.. .+..|.|.++ .+|+|.|+|.|.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn-g~~l~~---~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN-GKLLET---TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC-CEEeec---cCCeEEEeec-ccCCEEeEEECCCC
Confidence 56888999999999999999999 66564 47999999 655522 4568999999 99999999999875
No 131
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.27 E-value=3.3e-11 Score=84.80 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=58.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
+.|.|.+ .+.|.+.+.|+|++..+... +.......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999 89999999999998875433 2333344678999999999999999999999999888887776
No 132
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.26 E-value=3.2e-11 Score=85.75 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=57.7
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEeee---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
++|.|.+ .+.|.+.+.|+|++..+... .++.+.... ..|.|.+++.+|+|.|+|.+.|..|..+.++.|.|
T Consensus 1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4799999 89999999999999876543 344443322 26999999999999999999999999888888764
No 133
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.26 E-value=1.9e-11 Score=85.52 Aligned_cols=68 Identities=25% Similarity=0.558 Sum_probs=57.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
+.|.|.+ .+.|.+.++|+|++..+....++.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999 789999999999987755555554443 6789999999999999999999999998877665
No 134
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=3.1e-11 Score=88.46 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=61.0
Q ss_pred CeEEEEEEccCCCCCC--eEEEEeCCCCCCcCCC---c---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 197 DRADIQCVLEAGEPSP--TQTWIRPDNDGKFGPD---V---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 197 ~~~~L~C~~~~~~p~~--~v~W~~~~~~~~~~~~---~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
++++|.|.+ .+.|.+ .+.|++++..+..... + ......+.|.|.+++..|+|.|+|.+.|..+..+.++.|
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999999 777766 7799999887543321 1 111235689999999999999999999999999999999
Q ss_pred EEEeCC
Q psy17058 269 HVLTLP 274 (471)
Q Consensus 269 ~V~~~p 274 (471)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998765
No 135
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=5e-11 Score=88.49 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=55.2
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE-EEEE
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK-VITV 360 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 360 (471)
|..+.|.|.+.|+|.|+++|++++..+...... .....+.|.|.++. .+|+|.|+|.|.|..|.... .+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 457999999999999999999999877432111 12235689999885 68999999999999998744 4544
No 136
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.25 E-value=2.2e-11 Score=84.70 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=53.0
Q ss_pred EEEEee-CCCCCCeEEEEeCCCCCCCCCcc--cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058 109 VTIECK-SNDPSATIKWSKDNQEQLPPNMI--AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176 (471)
Q Consensus 109 v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~ 176 (471)
+.|.|. .+.|.+.+.|+|+ +..+..... .+..|.|.++..+|+|.|+|.|.|..|. ......+.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~-g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~-~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKN-GQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITK-EEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCc-eeeEEEEEEE
Confidence 468999 9999999999999 666654322 4568999999999999999999999987 5555555553
No 137
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=7.7e-11 Score=87.38 Aligned_cols=76 Identities=29% Similarity=0.528 Sum_probs=61.9
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCC--------cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGK--------FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
|+.++|.|.+ .+.|.+.+.|+|++..+. ...++.+.. .+.|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 6889999999 888999999999876531 122333322 567999999999999999999999999999999
Q ss_pred EEEEeC
Q psy17058 268 IHVLTL 273 (471)
Q Consensus 268 l~V~~~ 273 (471)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 998753
No 138
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.25 E-value=6.3e-11 Score=88.92 Aligned_cols=80 Identities=29% Similarity=0.527 Sum_probs=61.5
Q ss_pred EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc------cCcEEEEcCC-----CCCCCeEEEEEEEe
Q psy17058 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGI-----TKADEGVYICSIQN 161 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~------~~~~L~i~~v-----~~~D~G~Y~C~~~~ 161 (471)
+..+|.+..+.+|+++.|.|. .+.|.+.+.|+|+ +..+..... .++.|.|.++ ...|.|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD-GVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC-CeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 456788889999999999999 8889999999998 555543211 4556777776 68999999999999
Q ss_pred c-CCceeeeeEEEE
Q psy17058 162 A-QGNVFQDYASIQ 174 (471)
Q Consensus 162 ~-~~~~~~~~~~l~ 174 (471)
. .|...+..+.|.
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 9 887444444443
No 139
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=7.1e-11 Score=84.28 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=57.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCC-Cc--CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDG-KF--GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~-~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
++|.|.+ .+.|.+.++|+|++... +. ..++.....++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4789999 89999999999998642 22 123333344568999999999999999999999999888888877
No 140
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.24 E-value=3.6e-11 Score=84.45 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=57.5
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
+.|.|.+ .+.|.+.+.|+|++..+.... ........|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999 889999999999988755442 233346789999999999999999999999988777777664
No 141
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.24 E-value=1.2e-10 Score=89.47 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=69.3
Q ss_pred cCCeeeecCCCceeEE---cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcC-CCceEEe------eeceEEEeccC-CCC
Q psy17058 179 EMPRIRIHPNASQTFI---VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG-PDVEVYQ------ELGVLRFNNIA-TGD 247 (471)
Q Consensus 179 ~~p~~~~~~~~~~~v~---~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~------~~~~l~i~~~~-~~d 247 (471)
.+|.+...+.....+. .|..++|.|.+ .+.|.+.++|++++..+... .++.... ..+.|.|.++. .+|
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 3455544443222222 46789999999 78999999999998775432 2322111 13579999997 589
Q ss_pred CeEEEEEEEcCCCceEEEEEEEEEeCC
Q psy17058 248 EGKYTCIAENSAGKEVMNAYIHVLTLP 274 (471)
Q Consensus 248 ~G~Y~C~~~~~~~~~~~~~~l~V~~~p 274 (471)
.|.|+|.|.|..|.....+.|.+..+|
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 999999999999999999999988766
No 142
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=7.5e-11 Score=82.61 Aligned_cols=69 Identities=36% Similarity=0.657 Sum_probs=56.9
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
++|.|.+ .+.|.+.+.|+|++..++ ..+.... ....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELP-KGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCC-CCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4799999 889999999999977643 3344444 3678999999999999999999999999888777764
No 143
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=8.2e-11 Score=87.37 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=63.1
Q ss_pred ceeEEcCCeEEEEEEccCC-----CCCCeEEEEeCCCCCCcC--CCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058 190 SQTFIVGDRADIQCVLEAG-----EPSPTQTWIRPDNDGKFG--PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 262 (471)
...+.+|+.+.|.|.+ .+ .|.+.++|||++..+... ....+...++.|.|.++..+|+|.|+|.++|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 3457799999999998 55 688899999998764332 223333346789999999999999999999999888
Q ss_pred EEEEEEEE
Q psy17058 263 VMNAYIHV 270 (471)
Q Consensus 263 ~~~~~l~V 270 (471)
+..+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88777764
No 144
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.23 E-value=6.8e-11 Score=84.14 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=59.7
Q ss_pred eEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
.+.|.|.+ .+.|.+.+.|+|++..+....++.+.. ....|.|.++..+|+|.|+|.+.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999 899999999999998765555554433 2457999999999999999999999999888877764
No 145
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.23 E-value=8.9e-11 Score=83.57 Aligned_cols=73 Identities=34% Similarity=0.676 Sum_probs=57.4
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCC-CCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
|+.+.|.|.+ .+.|.+.+.|+++++. +....+.... ..+.|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVY-DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEe-cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999 7889999999975443 2222223333 3678999999999999999999999998887777764
No 146
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.22 E-value=1.1e-10 Score=85.64 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=64.5
Q ss_pred eCCCccEEecCCCcEEEEEEEee-cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058 278 ITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 278 ~~~~~~~~~~~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 356 (471)
+.++....+.+|++++|.|.+.+ .|.+.+.|++++..+.... ....+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 34445567889999999999975 6788999999987654321 234578999999999999999999999999988
Q ss_pred EEEE
Q psy17058 357 VITV 360 (471)
Q Consensus 357 ~~~l 360 (471)
++.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 8765
No 147
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.22 E-value=5.6e-11 Score=85.76 Aligned_cols=71 Identities=32% Similarity=0.507 Sum_probs=53.0
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCC-C------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFD-R------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAV 362 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~-~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 362 (471)
++|.|.+.|+|.|.+.|++++.... . ..........++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 5799999999999999999754221 0 0111112345789999999999999999999999987 55666654
No 148
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.21 E-value=4.8e-11 Score=85.43 Aligned_cols=65 Identities=28% Similarity=0.543 Sum_probs=50.7
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRE----SDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 356 (471)
+.|.|.+.|+|.|+++|+|++..+... .........+.|.|..+.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 478999999999999999999887432 1212234467888988754 7899999999999997643
No 149
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=7.9e-11 Score=84.10 Aligned_cols=66 Identities=27% Similarity=0.542 Sum_probs=49.7
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCC--CcccccccCceeEEEEeecC----CCCCeEEEEEEEcCCCceEEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFD--RNLERDELTSRAVYTIASVR----ESDAGQYKCIGKNSAGTEEKV 357 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~--~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 357 (471)
+.|.|.+.|+|.|.++|+|++..+. ...........++|.|..+. .+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4689999999999999999998653 12222223356789998764 247999999999999977543
No 150
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.21 E-value=8e-11 Score=84.60 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=58.8
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEee--eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 269 (471)
|+.+.|.|.+ .+.|.+.+.|++++..+....++.+... .+.|.|.++..+|.|.|+|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 6889999999 8899999999999877655555444332 35799999999999999999999998876554443
No 151
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.21 E-value=4.7e-11 Score=85.15 Aligned_cols=66 Identities=26% Similarity=0.609 Sum_probs=53.5
Q ss_pred ceeeCCCccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 275 AVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 275 ~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
.+.+.|. ...+.+|++++|+|.+.+.|.+ .+.|++++..+. .....|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~-~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPP-WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCC-CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 3444543 4578899999999999988864 799999998762 23568999999 99999999999986
No 152
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.20 E-value=8.3e-11 Score=83.97 Aligned_cols=65 Identities=25% Similarity=0.542 Sum_probs=49.6
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCc--ccccccCceeEEEEeecCC----CCCeEEEEEEEcCCCceEE
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRN--LERDELTSRAVYTIASVRE----SDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 356 (471)
+.|.|.+.|.|.|+++|++++..+... .........++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999876422 1112233457788877764 3789999999999998754
No 153
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.20 E-value=8.9e-11 Score=84.04 Aligned_cols=72 Identities=25% Similarity=0.493 Sum_probs=56.1
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCC-CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceE--EEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP-DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV--MNAYIHVL 271 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~ 271 (471)
++|.|.+ .+.|.+.++|+|++..+.... .+.+....+.|.|.++..+|+|.|.|.+.|..|... ..++|.|.
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999 789999999999988754433 333444456899999999999999999999998764 45555553
No 154
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.19 E-value=1.1e-10 Score=84.68 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=56.9
Q ss_pred EEEcCCceeecCCCcEEEEeeC--CCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058 94 VQVTPRQQSAPEGSQVTIECKS--NDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQD 169 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~~--~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~ 169 (471)
+.++++...|.+|++++|.|.. +.+...+.|+|+ +..+.. ......|.|.+++.+|+|.|+|.+.+..+...+.
T Consensus 2 ~~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~-~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~ 77 (83)
T cd05753 2 LLLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKY-SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE 77 (83)
T ss_pred eEEECCcceecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccc-cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence 3455666689999999999993 456678999999 544432 1245789999999999999999999988753333
No 155
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.18 E-value=1.9e-10 Score=85.52 Aligned_cols=69 Identities=26% Similarity=0.460 Sum_probs=53.3
Q ss_pred CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecC-CCCCeEEEEEEEcCCCceEE
Q psy17058 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR-ESDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 356 (471)
.|+.+.|.|.+.|+|.|+++|++++..+............+.|.|.++. .+|+|.|+|.|.|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4567999999999999999999999887422111122334678898876 48999999999999997643
No 156
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.17 E-value=2.3e-10 Score=84.04 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=63.9
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 360 (471)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+...... ........|.|.++..+|.|.|+|.|.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 45678999999999999999999999998876532111 112334579999999999999999999999998888887
Q ss_pred EE
Q psy17058 361 AV 362 (471)
Q Consensus 361 ~V 362 (471)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 157
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.16 E-value=1.2e-10 Score=82.66 Aligned_cols=66 Identities=29% Similarity=0.519 Sum_probs=52.5
Q ss_pred EEEEee-CCCCCCeEEEEeCCCCCCCC--C--cc--cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058 109 VTIECK-SNDPSATIKWSKDNQEQLPP--N--MI--AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 109 v~l~C~-~~~p~~~v~W~~~~~~~~~~--~--~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v 175 (471)
++|.|. .+.|.+.+.|+|+ +..+.. . .. .++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKD-FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEEC-CEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999 9999999999999 544431 1 11 46689999999999999999999999875566666655
No 158
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.16 E-value=1.2e-10 Score=82.14 Aligned_cols=70 Identities=24% Similarity=0.494 Sum_probs=56.7
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
++|.|.+ .+.|.+.+.|++++..+... +.........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999 78999999999998764332 2233333568999999999999999999999998888877766
No 159
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.16 E-value=2.1e-10 Score=79.82 Aligned_cols=68 Identities=26% Similarity=0.505 Sum_probs=53.7
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
|+.++|.|.+ .+.|.|.|+|+|++..+....+. ......|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~--~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEM--PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCCccce--ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999 89999999999998765433322 2224578888874 7999999999999987777665
No 160
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.16 E-value=3.2e-10 Score=83.12 Aligned_cols=73 Identities=26% Similarity=0.542 Sum_probs=58.1
Q ss_pred CCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCCCCCCcc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEE
Q psy17058 98 PRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQLPPNMI-AGETLIINGITKADEGVYICSIQNAQGNVFQDYAS 172 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~ 172 (471)
|....+.+|++++|.|. . +.|.+.+.|++++ ..++.... .++.|.|.+++.+|+|.|+|.+.|..|. ....+.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~ 83 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG-GGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT-DEATAT 83 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECC-CcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEE
Confidence 55778999999999999 4 4688899999994 43443332 5679999999999999999999998887 444443
No 161
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.15 E-value=1.9e-10 Score=82.32 Aligned_cols=68 Identities=21% Similarity=0.384 Sum_probs=53.3
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
+.|.|.+.+ .|.+.+.|++++..+..... .......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 67789999999988753211 111234578999999999999999999999999887764
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.14 E-value=2.6e-10 Score=82.53 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=53.8
Q ss_pred cCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC-cc---cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-MI---AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~-~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
.|.+..+.+|+++.|.|....+.+.+.|+++ +..+... .. ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~~~~~i~W~~n-g~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKSNLARVVWKFD-GKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCCCCCeEEEEEC-CEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 4778899999999999994446789999999 6655433 11 56789999999999999999998764
No 163
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.14 E-value=2.2e-10 Score=81.25 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=54.5
Q ss_pred EEEEccCCCCCCeEEEEeCCCCCCcCCCceE--E-----eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--Y-----QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269 (471)
Q Consensus 201 L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 269 (471)
|.|.+ .|.|.|+++|+|++..+........ . ...+.|.|.++...|+|.|+|.|+|..|..+.++.+.
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67888 8999999999999988655443211 1 1245799999999999999999999999888777654
No 164
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.14 E-value=3.2e-10 Score=81.60 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=55.2
Q ss_pred EEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---------eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 200 ~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 270 (471)
.|.|.+ .+.|.|.++|+|+|..+......... ...+.|.|.+++..|+|.|+|.|.|..|..+.++.|..
T Consensus 2 ~i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 367888 89999999999999876554432221 11346999999999999999999999999888776653
No 165
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.13 E-value=6.9e-10 Score=82.22 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=62.4
Q ss_pred ccEEecCCCcEEEEEEEeecCCC-eEEEEeCCccCCCc----ccc----cccCceeEEEEeecCCCC-CeEEEEEEEcCC
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRN----LER----DELTSRAVYTIASVRESD-AGQYKCIGKNSA 351 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~----~~~----~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~ 351 (471)
....+.+|+.+.|.|.+.+.|+| .+.|.+++..+... ... ......++|.|.++...| .|.|.|.|.|.+
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 45688899999999999888887 68898887765432 111 112467899999998766 799999999999
Q ss_pred CceEEEEEE
Q psy17058 352 GTEEKVITV 360 (471)
Q Consensus 352 g~~~~~~~l 360 (471)
|.+...+.|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 999988876
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.11 E-value=6.7e-10 Score=82.46 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=57.1
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCC--------ccc---ccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR--------NLE---RDELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~--------~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..+ ........+|.|.++..+|+|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 356889999999999999999999999998764310 011 011123579999999999999999999882
Q ss_pred CCceEEEEEEE
Q psy17058 351 AGTEEKVITVA 361 (471)
Q Consensus 351 ~g~~~~~~~l~ 361 (471)
-..++...|.
T Consensus 85 -~~~~~~~~~~ 94 (95)
T cd05882 85 -PVRTAKATVT 94 (95)
T ss_pred -ccccEEEEEE
Confidence 2334444443
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.11 E-value=3.2e-10 Score=79.00 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=52.5
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 269 (471)
+.|.|.+ .+.|.+++.|+|++..+..... .....+..|.|.+++.+|+|.|+|.+.|..........+.
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 4689999 8999999999999977554322 2223356899999999999999999999766554444433
No 168
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.09 E-value=6.3e-10 Score=82.42 Aligned_cols=74 Identities=28% Similarity=0.519 Sum_probs=56.2
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCC----CCCCcCCC--ceEEe---------eeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPD--VEVYQ---------ELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
|+.++|.|.+ .+.|.+.++|+|++ ..+..... ..+.. ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6889999999 78999999999853 22111111 11111 124799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy17058 261 KEVMNAYIHV 270 (471)
Q Consensus 261 ~~~~~~~l~V 270 (471)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888877
No 169
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.09 E-value=6e-10 Score=82.46 Aligned_cols=74 Identities=28% Similarity=0.524 Sum_probs=56.2
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCC----CCCcCC--CceEE---------eeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDN----DGKFGP--DVEVY---------QELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~----~~~~~~--~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
|+.++|.|.+ .+.|.|.++|+|++. .+.... ..... .....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999 899999999999642 111111 11111 1134799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy17058 261 KEVMNAYIHV 270 (471)
Q Consensus 261 ~~~~~~~l~V 270 (471)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9888888877
No 170
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.08 E-value=5.5e-10 Score=82.37 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=60.3
Q ss_pred EEecCCCcEEEEEEEee-----cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 284 VSVRPGEPLTLECEATG-----RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 358 (471)
..+.+|++..|.|...+ +|.|.+.|+|++.++....... ...+.|.|.++..+|+|.|+|.|.|..+...-++
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~--~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~ 82 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF--VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV 82 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE--ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence 46778999999998754 2567999999999886543321 1667999999999999999999999988775554
Q ss_pred EEEE
Q psy17058 359 TVAV 362 (471)
Q Consensus 359 ~l~V 362 (471)
...+
T Consensus 83 t~t~ 86 (92)
T cd05757 83 TRTI 86 (92)
T ss_pred EEEE
Confidence 4443
No 171
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.08 E-value=1e-09 Score=80.15 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=58.1
Q ss_pred CCcEEEEEEEeecCC--CeEEEEeCCccCCCcc-----c---ccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 289 GEPLTLECEATGRPM--PTVSWVKYIAPFDRNL-----E---RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358 (471)
Q Consensus 289 g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~-----~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 358 (471)
|+++.|.|.+.+.+. ..+.|...+....... . .......++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999987654 4789998776432111 0 01123467999999999999999999999999988888
Q ss_pred EEEEe
Q psy17058 359 TVAVE 363 (471)
Q Consensus 359 ~l~V~ 363 (471)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 172
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.08 E-value=8e-10 Score=79.05 Aligned_cols=72 Identities=29% Similarity=0.467 Sum_probs=58.4
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
+.|.|.+ .+.|.+.+.|+|++..+.... ++.....+..|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999 789999999999988754432 23333334579999999999999999999999998888888775
No 173
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.08 E-value=1e-09 Score=81.20 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=56.1
Q ss_pred cCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC------cc-cCcEEEEcCCCCCCCeEEEEEEEecCCceeee
Q psy17058 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN------MI-AGETLIINGITKADEGVYICSIQNAQGNVFQD 169 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~------~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~ 169 (471)
.|..+.+.+|+++.|.|....|.+.+.|++++. .+... .. ....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKSNLASVVWLFQGG-PLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred cceEEEEECCCcEEEEEeCCCCCceEEEEECCc-ccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 355678999999999999333778999999943 33221 11 44569999999999999999998765542333
Q ss_pred eEEEEE
Q psy17058 170 YASIQV 175 (471)
Q Consensus 170 ~~~l~v 175 (471)
...|.|
T Consensus 81 ~~~l~V 86 (89)
T cd04979 81 TYSLNV 86 (89)
T ss_pred EEEEEE
Confidence 344433
No 174
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=2.3e-09 Score=80.86 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=61.6
Q ss_pred CceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC--CCceEEee------eceEEEeccCCC-CCeEEEEEEEcC
Q psy17058 189 ASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG--PDVEVYQE------LGVLRFNNIATG-DEGKYTCIAENS 258 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~------~~~l~i~~~~~~-d~G~Y~C~~~~~ 258 (471)
....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+... .++.+... .+.|.|.++..+ |.|.|+|.|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 35567899999999999 788888 69999998765443 34444332 247999999994 489999999999
Q ss_pred CCceEEEEEE
Q psy17058 259 AGKEVMNAYI 268 (471)
Q Consensus 259 ~~~~~~~~~l 268 (471)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9987776655
No 175
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.06 E-value=1.5e-09 Score=78.82 Aligned_cols=74 Identities=32% Similarity=0.533 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCC---CCcCC-C--ce-EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDND---GKFGP-D--VE-VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~---~~~~~-~--~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
|+.++|.|.+ .+.|.+.++|+|++.. ..... . .. .....+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 6889999999 8899999999997431 11111 0 01 11224679999999999999999999999998888877
Q ss_pred EE
Q psy17058 269 HV 270 (471)
Q Consensus 269 ~V 270 (471)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 64
No 176
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.04 E-value=1.1e-09 Score=80.47 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCC--cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK--FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 262 (471)
....+.+|+.+.|.|....+.|.+.+.|++++..+. ...+..+...++.|.|.+++.+|+|.|+|.|+|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 345688999999999998999999999999987532 22333344447899999999999999999999876443
No 177
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.04 E-value=1.1e-09 Score=78.24 Aligned_cols=69 Identities=22% Similarity=0.416 Sum_probs=53.4
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce---EE--eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE---VY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
+.|.|.+..+.|.+.+.|+|++..+....... +. ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 47999994338999999999988766544322 11 12457999999999999999999999998766553
No 178
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.04 E-value=3e-09 Score=78.61 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=60.0
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCCCCCeEEEEEEEcCCC-ceEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIATGDEGKYTCIAENSAG-KEVMNA 266 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~ 266 (471)
...+.+|+.+.|.|.+ .+ |.+.+.|++++..+.... ..++......|.|.+++.+|+|.|.|.+.+..+ ....+.
T Consensus 5 ~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 5 VVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 4467899999999998 44 778999999998755432 123333345699999999999999999987644 456667
Q ss_pred EEEEE
Q psy17058 267 YIHVL 271 (471)
Q Consensus 267 ~l~V~ 271 (471)
.|.|.
T Consensus 83 ~l~V~ 87 (89)
T cd04979 83 SLNVL 87 (89)
T ss_pred EEEEe
Confidence 77764
No 179
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.03 E-value=1.6e-09 Score=78.12 Aligned_cols=70 Identities=23% Similarity=0.530 Sum_probs=52.5
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCC--------cCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGK--------FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIH 269 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~ 269 (471)
++|.|.+ .+.|.+.++|++++.... ...++... .++.|.|.++..+|+|.|.|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL-SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEe-cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799999 789999999999754311 12223332 35789999999999999999999998874 5556554
Q ss_pred E
Q psy17058 270 V 270 (471)
Q Consensus 270 V 270 (471)
|
T Consensus 79 ~ 79 (79)
T cd05734 79 V 79 (79)
T ss_pred C
Confidence 3
No 180
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.03 E-value=1.6e-09 Score=80.49 Aligned_cols=73 Identities=25% Similarity=0.525 Sum_probs=55.4
Q ss_pred CcEEEcCCceeecCC---CcEEEEee-CCCCCCeEEEEeCCCCCCCCC--cc---cCcEEEEcCCCC-CCCeEEEEEEEe
Q psy17058 92 NEVQVTPRQQSAPEG---SQVTIECK-SNDPSATIKWSKDNQEQLPPN--MI---AGETLIINGITK-ADEGVYICSIQN 161 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G---~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~--~~---~~~~L~i~~v~~-~D~G~Y~C~~~~ 161 (471)
|.|.-+|.+..+.+| +.+.|.|. .+.|.+.++|+++ +..+... .. ..+.|.|.++.. +|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~-~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMN-GTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEEC-CEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence 455566666655444 57999999 8889999999998 5555221 11 457899998874 899999999999
Q ss_pred cCCc
Q psy17058 162 AQGN 165 (471)
Q Consensus 162 ~~~~ 165 (471)
..|.
T Consensus 81 ~~G~ 84 (91)
T cd04967 81 IVGT 84 (91)
T ss_pred CCCE
Confidence 9886
No 181
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.02 E-value=1.2e-09 Score=81.04 Aligned_cols=64 Identities=25% Similarity=0.545 Sum_probs=50.6
Q ss_pred CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------CCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------PPNMI------AGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
.++++.+|+++.|.|. .+.|.+.+.|++.++..+ ..+.. ....|.|.+++.+|+|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 5778999999999999 888899999999843211 01111 2468999999999999999999873
No 182
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.02 E-value=1.8e-09 Score=79.59 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=58.8
Q ss_pred eeEEcCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 191 QTFIVGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 191 ~~v~~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
+.+.+|+...|.|..... +|.+.+.|+|++..+..... .+. .++.|.|.++..+|+|.|+|.+.|..+.....+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~ 82 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV 82 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence 457789999999986432 25789999999987654432 222 478899999999999999999999877755544
Q ss_pred EEE
Q psy17058 267 YIH 269 (471)
Q Consensus 267 ~l~ 269 (471)
...
T Consensus 83 t~t 85 (92)
T cd05757 83 TRT 85 (92)
T ss_pred EEE
Confidence 433
No 183
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.02 E-value=2.2e-09 Score=78.41 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=56.9
Q ss_pred CCeEEEEEEccCCC--CCCeEEEEeCCCCCCcCCC----c---eEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 196 GDRADIQCVLEAGE--PSPTQTWIRPDNDGKFGPD----V---EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 196 g~~~~L~C~~~~~~--p~~~v~W~~~~~~~~~~~~----~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
|+.++|.|.+ .+. |.+.+.|++++..+..... . ......+.|.|.+++..|+|.|+|.+.|..+..+.+.
T Consensus 1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 7899999999 666 7889999988765322110 0 0111245799999999999999999999999888888
Q ss_pred EEEE
Q psy17058 267 YIHV 270 (471)
Q Consensus 267 ~l~V 270 (471)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8766
No 184
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.01 E-value=1.2e-09 Score=80.27 Aligned_cols=66 Identities=20% Similarity=0.429 Sum_probs=53.5
Q ss_pred CceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCC--CCCc---c--cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 99 RQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL--PPNM---I--AGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~--~~~~---~--~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
....+.+|+.+.|.|. .+.|.+.+.|+++ +..+ ..+. . .++.|.|.+|+.+|+|.|+|.|.|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-CcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3466999999999998 8889999999999 4432 1111 1 4689999999999999999999987654
No 185
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.01 E-value=1.9e-09 Score=77.17 Aligned_cols=64 Identities=30% Similarity=0.547 Sum_probs=49.8
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEV 263 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 263 (471)
++|.|.+ .+.|.++++|+|++..+.... ++......+.|.|..+.. +|+|.|.|.|.|..|...
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 4799999 899999999999988754332 333334467899998754 689999999999998743
No 186
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.01 E-value=2.1e-09 Score=76.82 Aligned_cols=69 Identities=16% Similarity=0.389 Sum_probs=52.1
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCC----ceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
+.|.|.+..+.|.+.+.|++++..+..... +.+.. ..+.|.|.++...|+|.|+|.+.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999855578889999999887654321 12111 2457999999999999999999999988766553
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.00 E-value=2.9e-09 Score=79.35 Aligned_cols=75 Identities=19% Similarity=0.427 Sum_probs=54.0
Q ss_pred CCceeecCCCcEEEEee-CCCCCCeEEEEeCC--------CCCC-CCCcc------cCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDN--------QEQL-PPNMI------AGETLIINGITKADEGVYICSIQN 161 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~--------~~~~-~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~ 161 (471)
+.++.+.+|+++.|.|. .+.|.+.+.|++.+ .... ..+.. ...+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 46788999999999999 77888999998632 1111 11211 336899999999999999999987
Q ss_pred cCCceeeeeEEEE
Q psy17058 162 AQGNVFQDYASIQ 174 (471)
Q Consensus 162 ~~~~~~~~~~~l~ 174 (471)
... ....+.|.
T Consensus 84 ~~~--~~~~~~l~ 94 (95)
T cd07701 84 MPV--KTSKAYLT 94 (95)
T ss_pred ecC--ccEEEEEE
Confidence 433 23444443
No 188
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.00 E-value=3.3e-09 Score=75.70 Aligned_cols=65 Identities=31% Similarity=0.527 Sum_probs=49.3
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCC--CceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP--DVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEVM 264 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 264 (471)
+.|.|.+ .|.|.++++|+|++..+.... ...+...++.|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4799999 899999999999988653332 233333467888887764 3789999999999987543
No 189
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.00 E-value=4.3e-09 Score=76.16 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=53.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
...+..|+++.|.|.+ . .+.++++|++++..+....... ....+.|.|.+++.+|+|.|+|.+.+..
T Consensus 5 ~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 5 QRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKY-LLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 4578899999999998 3 3678999999998866553222 2235679999999999999999998763
No 190
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.99 E-value=4.1e-09 Score=75.21 Aligned_cols=64 Identities=30% Similarity=0.526 Sum_probs=49.2
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEEeeeceEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIAT----GDEGKYTCIAENSAGKEV 263 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 263 (471)
+.|.|.+ .|.|.+.++|+|++..+.. ..++.+...++.|.|..+.. +|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999 8999999999999875432 33444444467899987642 469999999999998753
No 191
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.99 E-value=4.6e-09 Score=78.29 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=57.7
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--------CCCcccc---cccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--------FDRNLER---DELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--------~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
.++.+.+|+++.|.|.+.+.|.+.+.|++.+.. .....+. .......+|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 356889999999999999999999999863221 1111111 11234578999999999999999999985
Q ss_pred CCceEEEEEEEE
Q psy17058 351 AGTEEKVITVAV 362 (471)
Q Consensus 351 ~g~~~~~~~l~V 362 (471)
.+ .+....|.|
T Consensus 85 ~~-~~~~~~l~v 95 (95)
T cd07701 85 PV-KTSKAYLTV 95 (95)
T ss_pred cC-ccEEEEEEC
Confidence 33 366666654
No 192
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.99 E-value=2.1e-09 Score=73.59 Aligned_cols=63 Identities=38% Similarity=0.736 Sum_probs=52.1
Q ss_pred CCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
+|+++.|.|.+.+.|.+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 488999999988888899999998877662 212334567899999999999999999999765
No 193
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.98 E-value=5.7e-09 Score=75.92 Aligned_cols=75 Identities=25% Similarity=0.466 Sum_probs=54.9
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCC----Cce--EEeeeceEEEeccCCCCCeEEEEEEEcCCC--ceEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVE--VYQELGVLRFNNIATGDEGKYTCIAENSAG--KEVMNAY 267 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~----~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~ 267 (471)
|++++|.|.+ .+.|.+.+.|+++++...... ... .......|.|.+++.+|+|.|.|.+.|..+ ....++.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999 678889999998775421111 111 111246799999999999999999998766 4566666
Q ss_pred EEEE
Q psy17058 268 IHVL 271 (471)
Q Consensus 268 l~V~ 271 (471)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6664
No 194
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.98 E-value=2.4e-09 Score=77.62 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=52.1
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
.+.+|+.++|.|.+..+.+...+.|+|++..+.. ......|.|.+++.+|+|.|+|.+.+..+.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 6889999999999855566778999999875432 112567999999999999999999988764
No 195
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.96 E-value=7.4e-09 Score=75.94 Aligned_cols=78 Identities=28% Similarity=0.506 Sum_probs=60.1
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE---eeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY---QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 268 (471)
.+..|+.+.|.|.+ .+.|.+.+.|++++..+......... .....|.|.++..+|.|.|.|.+.|..|..+.++.|
T Consensus 5 ~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 5 AVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred EecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 45689999999999 67888999999998764433222211 113468999999999999999999998887777776
Q ss_pred EE
Q psy17058 269 HV 270 (471)
Q Consensus 269 ~V 270 (471)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 54
No 196
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=7.8e-09 Score=76.23 Aligned_cols=64 Identities=23% Similarity=0.500 Sum_probs=48.0
Q ss_pred ceeecCCCcEEEEeeCCCCCCeEEEEeCCCC-CCC------CCcc-cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 100 QQSAPEGSQVTIECKSNDPSATIKWSKDNQE-QLP------PNMI-AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~-~~~------~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
.+.+.+|+++.|.|..+.|.+.+.||+.... ... .+.. ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus 5 ~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 5 VVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccC
Confidence 4568899999999995578889999985221 111 1111 45679999999999999999998543
No 197
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.95 E-value=1.3e-08 Score=74.83 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=66.9
Q ss_pred cEEecCCCcEEEEEEEeecCCCe-EEEEeCCccCCCccc--c-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLE--R-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
.+.+.+|+++.|.|.+.++|+|+ +.|.+++..+..... . ......+.|.+..+..+|+|.|+|.|.|+....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45889999999999999999997 999998876542211 0 112245889999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy17058 355 EKVITVAVE 363 (471)
Q Consensus 355 ~~~~~l~V~ 363 (471)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999999875
No 198
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=3.3e-09 Score=77.75 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=58.3
Q ss_pred CccEEecCCCcEEEEEE-EeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCe-EEEEEEEcCCCce
Q psy17058 281 SEYVSVRPGEPLTLECE-ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG-QYKCIGKNSAGTE 354 (471)
Q Consensus 281 ~~~~~~~~g~~v~l~C~-~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~ 354 (471)
...+.+.+|+.+.|.|. ..|.|.|.+.|++++........+......+.|.|.+++.+|+| .|.|.|.|.....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 34568899999999997 68999999999987654332223334445699999999999999 8999999986443
No 199
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.91 E-value=9.9e-09 Score=75.98 Aligned_cols=70 Identities=14% Similarity=0.325 Sum_probs=55.5
Q ss_pred CCcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCC----cccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
.|.|.+.|. ..|.+|++|+|.|....+...+.|+++ |...... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~~~~~~f~l~k~-g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGPYGAVEYRLYRE-GSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecCCCCCEEEEEEC-CCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 577888885 479999999999996677788999999 4432211 114567999999999999999999875
No 200
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.90 E-value=1.3e-08 Score=74.98 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=58.3
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCc--cCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEE-cCCCceEEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIA--PFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGK-NSAGTEEKVI 358 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~ 358 (471)
+...+|+++.|.|.. +.|.+.+.|++... ..... .........+.|.|.+++.+|+|.|+|.|. |..+.....+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 457789999999997 47888999998432 21110 011112234679999999999999999998 5777777788
Q ss_pred EEEEec
Q psy17058 359 TVAVEH 364 (471)
Q Consensus 359 ~l~V~~ 364 (471)
+|.|..
T Consensus 85 ~l~v~~ 90 (91)
T cd05871 85 TLHVIE 90 (91)
T ss_pred EEEEec
Confidence 888764
No 201
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.90 E-value=4.5e-09 Score=76.10 Aligned_cols=76 Identities=26% Similarity=0.567 Sum_probs=56.1
Q ss_pred CcEEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY 170 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 170 (471)
|.++..+ ..+.+|+.++|.|. .+.|...+.|+++ +..+.. ....|.|.+++.+|+|.|+|.+.+..+...+..
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~---~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~ 75 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKN-GSPINS---SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTS 75 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEET-TEEEEE---ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeee-eeeeee---eeeeeeeeeeccccCEEEEEEEEeCCCCeEeee
Confidence 5566555 56899999999999 8778899999998 555442 222388899999999999999998665423333
Q ss_pred EEE
Q psy17058 171 ASI 173 (471)
Q Consensus 171 ~~l 173 (471)
..|
T Consensus 76 ~~v 78 (80)
T PF13895_consen 76 VNV 78 (80)
T ss_dssp EEE
T ss_pred EEe
Confidence 333
No 202
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.88 E-value=1.1e-08 Score=72.40 Aligned_cols=63 Identities=14% Similarity=0.322 Sum_probs=49.4
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
+.|+|...+ +|+++|.||+++.++....... .....++|.+.....+|++.|+|+|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999865 8999999999999986432111 11244679999999999999999999997754
No 203
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.88 E-value=7.1e-09 Score=75.03 Aligned_cols=71 Identities=32% Similarity=0.651 Sum_probs=56.0
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC-ceEEEEEEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKVITVAV 362 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V 362 (471)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...+.+..+..+|+|.|+|.|.+..+ ..+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 35788999999999999888999999987665411 11277889999999999999999654 4456666655
No 204
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.88 E-value=1.6e-08 Score=71.53 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=50.3
Q ss_pred eEEEEEEccCCCCCCeEEEEeCCCCCCcCC----CceEEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
.++|.|....+.|++.++||+++..+.... ....+...++|.|.....+|++.|+|+|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 368999998999999999999998764321 1112233557999999999999999999998664
No 205
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.85 E-value=1.8e-08 Score=73.92 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-CcCCCceEEeeeceEEEeccCCCCCe-EEEEEEEcCCCc
Q psy17058 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEG-KYTCIAENSAGK 261 (471)
Q Consensus 188 ~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~ 261 (471)
.....+.+|+.+.|.|....+.|.+.|.|++++... ....++.+.. ++.|.|.++...|.| .|.|.|+|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ-NGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC-CceEEEEEEehhhCCCCeEEEEEccccc
Confidence 345678899999999986589999999999876542 2233443333 689999999999999 899999987543
No 206
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.85 E-value=6.2e-09 Score=71.63 Aligned_cols=59 Identities=31% Similarity=0.584 Sum_probs=44.9
Q ss_pred CCcEEEEEEE-eecCCCeEEEEeCCccCCCcccccccCc----eeEEEEeecCCCCCeEEEEEE
Q psy17058 289 GEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTS----RAVYTIASVRESDAGQYKCIG 347 (471)
Q Consensus 289 g~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a 347 (471)
|+++.|.|.+ .+.+...+.|++++.............. ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6577779999999888764322111111 123999999999999999986
No 207
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.85 E-value=6.5e-08 Score=71.75 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=61.6
Q ss_pred cCCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcC--CCceEEe------eeceEEEeccCCCC-CeEEEEEE
Q psy17058 186 HPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG--PDVEVYQ------ELGVLRFNNIATGD-EGKYTCIA 255 (471)
Q Consensus 186 ~~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~------~~~~l~i~~~~~~d-~G~Y~C~~ 255 (471)
.....+.+.+|+.++|.|.+ .+.|.+ .+.|..++..+... .++.+.. ..+.|.|.++...| .|.|.|.|
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred ecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 33455678899999999999 556654 78888877654332 3555543 24579999998867 79999999
Q ss_pred EcCCCceEEEEEE
Q psy17058 256 ENSAGKEVMNAYI 268 (471)
Q Consensus 256 ~~~~~~~~~~~~l 268 (471)
.|..|.....+.|
T Consensus 85 ~N~~G~d~~~i~L 97 (98)
T cd05898 85 WNSFGSGTAIIQL 97 (98)
T ss_pred EeCCccceEEEEe
Confidence 9999998877665
No 208
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.84 E-value=3.1e-08 Score=74.74 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=53.7
Q ss_pred EEEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC--------------------CCCCcc--cCcEEEEcCCCCC
Q psy17058 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ--------------------LPPNMI--AGETLIINGITKA 150 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~--------------------~~~~~~--~~~~L~i~~v~~~ 150 (471)
++++|.+..+.+|+++.|.|. .......+.|+|+.... ..++.. .+++|.|.+++.+
T Consensus 1 ~tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 1 LTIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK 80 (105)
T ss_pred CeEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence 356677778999999999998 54555689999972211 001111 5679999999999
Q ss_pred CCeEEEEEEEecCCc
Q psy17058 151 DEGVYICSIQNAQGN 165 (471)
Q Consensus 151 D~G~Y~C~~~~~~~~ 165 (471)
|+|.|.|.+.+....
T Consensus 81 D~G~Y~~~v~~~~~~ 95 (105)
T cd05774 81 DTGFYTLQTITTNFQ 95 (105)
T ss_pred cCEEEEEEEEeCCcc
Confidence 999999999987643
No 209
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.82 E-value=1.6e-08 Score=74.59 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=52.4
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeCCccC-C---------------Ccccc---cccCceeEEEEeecCCCCCeEEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-D---------------RNLER---DELTSRAVYTIASVRESDAGQYK 344 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~-~---------------~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~ 344 (471)
+.+.+|++|+|.|.+.+.+.+.+.|+++++.. . ..... ........|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35678999999999998888999999665321 0 00000 01234467999999999999999
Q ss_pred EEEEcCCCce
Q psy17058 345 CIGKNSAGTE 354 (471)
Q Consensus 345 C~a~n~~g~~ 354 (471)
|.|.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999976653
No 210
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.82 E-value=1.5e-08 Score=74.60 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=57.3
Q ss_pred EEecCCCcEEEEEEE-ee----cCCCeEEEEeCCccCCCcccc-cccCceeEEEEeecCCCCCeEEEEEEEcCCCce---
Q psy17058 284 VSVRPGEPLTLECEA-TG----RPMPTVSWVKYIAPFDRNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--- 354 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~-~g----~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--- 354 (471)
..+.+|.+..|.|.- .+ ++.++++|+|++.++...... ........|.|.++..+|+|.|+|.|.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 356779999999983 33 356699999999887643221 111234579999999999999999999987644
Q ss_pred -EEEEEEEE
Q psy17058 355 -EKVITVAV 362 (471)
Q Consensus 355 -~~~~~l~V 362 (471)
++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 44555554
No 211
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.82 E-value=2.5e-08 Score=68.18 Aligned_cols=63 Identities=30% Similarity=0.619 Sum_probs=50.7
Q ss_pred cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
+|+.++|.|.+ .+.+.+.+.|++++..+. ...........|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999997 678888999999887655 2333344466899999999999999999988653
No 212
>smart00409 IG Immunoglobulin.
Probab=98.81 E-value=7.7e-08 Score=70.32 Aligned_cols=80 Identities=34% Similarity=0.611 Sum_probs=62.2
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+... ...........|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34677899999999999887889999998 6655411 11111222578999999999999999999999888877777
Q ss_pred EEE
Q psy17058 360 VAV 362 (471)
Q Consensus 360 l~V 362 (471)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 213
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.81 E-value=7.7e-08 Score=70.32 Aligned_cols=80 Identities=34% Similarity=0.611 Sum_probs=62.2
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeC-CccCCCc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 359 (471)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+... ...........|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 34677899999999999887889999998 6655411 11111222578999999999999999999999888877777
Q ss_pred EEE
Q psy17058 360 VAV 362 (471)
Q Consensus 360 l~V 362 (471)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 214
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.80 E-value=5.6e-08 Score=72.81 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=55.9
Q ss_pred cEEecCCCcEEEEEEEeecCCCeEEEEeCCccC---------C-Ccccc-cccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF---------D-RNLER-DELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~---------~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
.+.+.+|+++.|.|.+.+.+.+.+.|++.+..+ . ..... ........|.|.+++.+|+|.|+|.+.+..
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 467899999999999988888899998633221 1 00000 112245689999999999999999999865
Q ss_pred CceEEEEEEEE
Q psy17058 352 GTEEKVITVAV 362 (471)
Q Consensus 352 g~~~~~~~l~V 362 (471)
. .+.++.|.|
T Consensus 86 ~-~~~~~~~~v 95 (95)
T cd05717 86 V-QTAKATVTV 95 (95)
T ss_pred C-ceEEEEEEC
Confidence 3 455555554
No 215
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.79 E-value=7e-08 Score=71.15 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=58.3
Q ss_pred eeEEcCCeEEEEEEccC----------CCCCCeEEEEeCCCCCCcCC-----CceEEeeeceEEEeccCCCCCeEEEEEE
Q psy17058 191 QTFIVGDRADIQCVLEA----------GEPSPTQTWIRPDNDGKFGP-----DVEVYQELGVLRFNNIATGDEGKYTCIA 255 (471)
Q Consensus 191 ~~v~~g~~~~L~C~~~~----------~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 255 (471)
..+.+|+.+.|.|.... ......+.|||++..+.... ..++...+..|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 45779999999998611 12234899999975543322 1255556788999999999999999999
Q ss_pred EcCCCceEEEEEEEE
Q psy17058 256 ENSAGKEVMNAYIHV 270 (471)
Q Consensus 256 ~~~~~~~~~~~~l~V 270 (471)
+|...-...++.|+|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 988766666665543
No 216
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.79 E-value=4.7e-08 Score=72.03 Aligned_cols=73 Identities=19% Similarity=0.396 Sum_probs=52.3
Q ss_pred ceeecCCCcEEEEeeC------------CCCCCeEEEEeCCCCCCCC--------Ccc-cCcEEEEcCCCCCCCeEEEEE
Q psy17058 100 QQSAPEGSQVTIECKS------------NDPSATIKWSKDNQEQLPP--------NMI-AGETLIINGITKADEGVYICS 158 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~~------------~~p~~~v~W~~~~~~~~~~--------~~~-~~~~L~i~~v~~~D~G~Y~C~ 158 (471)
...+.+|+.+.|.|.. ......+.|+|++...... +.. .+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 4678999999999982 2234479999994222211 111 678999999999999999999
Q ss_pred EEecCCceeeeeEEE
Q psy17058 159 IQNAQGNVFQDYASI 173 (471)
Q Consensus 159 ~~~~~~~~~~~~~~l 173 (471)
+.|.... ......|
T Consensus 89 ~rN~t~C-~~~~i~l 102 (104)
T cd05896 89 LRNSTYC-MKVSMSL 102 (104)
T ss_pred ECCCCcc-eEEEEEE
Confidence 9987755 4333333
No 217
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.77 E-value=6.9e-08 Score=72.31 Aligned_cols=65 Identities=26% Similarity=0.591 Sum_probs=48.6
Q ss_pred CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC--------CC-CCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ--------LP-PNMI------AGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~--------~~-~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
+.+.+.+|++++|.|. .+.+.+.+.|++.++.. .. .+.. ....|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 5678999999999999 66677899998632211 11 1111 2357999999999999999999865
Q ss_pred C
Q psy17058 163 Q 163 (471)
Q Consensus 163 ~ 163 (471)
.
T Consensus 85 ~ 85 (95)
T cd05717 85 P 85 (95)
T ss_pred C
Confidence 4
No 218
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.76 E-value=2.3e-08 Score=68.72 Aligned_cols=60 Identities=25% Similarity=0.525 Sum_probs=46.1
Q ss_pred CCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeec----eEEEeccCCCCCeEEEEEE
Q psy17058 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTCIA 255 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~Y~C~~ 255 (471)
|++++|.|.+....+...+.|++++................ .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 78999999985566778999999998755443333322222 2999999999999999986
No 219
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.75 E-value=6.2e-08 Score=71.29 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=51.0
Q ss_pred ceeecCCCcEEEEee--C----CCCCCeEEEEeCCCCCCCCCc------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 100 QQSAPEGSQVTIECK--S----NDPSATIKWSKDNQEQLPPNM------IAGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~--~----~~p~~~v~W~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
.+.+.+|.+..|.|. . ..+.+.++|||+ +..+.... .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 346888999999997 2 446679999999 55554322 13468999999999999999999997655
No 220
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.74 E-value=7.2e-08 Score=70.37 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=54.8
Q ss_pred CCeEEEEEEccC-CCCCCeEEEEeCCCCCCcC---CC--ce---EEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 196 GDRADIQCVLEA-GEPSPTQTWIRPDNDGKFG---PD--VE---VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 196 g~~~~L~C~~~~-~~p~~~v~W~~~~~~~~~~---~~--~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
|++++|.|.+.. ..+...+.|.++++..... .. .. .....+.|.|.+++..|+|.|+|.+.|..+....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999932 2345688999877642111 11 00 012256799999999999999999999888777777
Q ss_pred EEEEE
Q psy17058 267 YIHVL 271 (471)
Q Consensus 267 ~l~V~ 271 (471)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 221
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.73 E-value=6.7e-08 Score=71.55 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=56.2
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
|.+.+.| ...+..|++|+|.|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|.+.|.
T Consensus 3 P~L~a~p--~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP--SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC--CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4455554 34678999999999886 6677899999988654321 123455678999999999999999999986
No 222
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.72 E-value=9.1e-08 Score=68.72 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=54.1
Q ss_pred CceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcc---cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058 99 RQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v 175 (471)
...++.+|+++.|.|....+.+.+.|+++ +..+..+.. ....|.|..++.+|+|.|.|.+.-. |- ....+.+.+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~n-g~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~-gf-~~~~~~y~l 80 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLASPVWLFN-GTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE-GF-QQLVASYSL 80 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCccEEEEEC-CcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC-CC-eEEEEEEEE
Confidence 35679999999999995555789999999 555543222 5556889999999999999998632 22 333444444
Q ss_pred e
Q psy17058 176 D 176 (471)
Q Consensus 176 ~ 176 (471)
.
T Consensus 81 ~ 81 (85)
T cd05872 81 N 81 (85)
T ss_pred E
Confidence 3
No 223
>PHA03376 BARF1; Provisional
Probab=98.70 E-value=1.2e-07 Score=76.20 Aligned_cols=118 Identities=17% Similarity=0.325 Sum_probs=74.0
Q ss_pred ceeecCCCcEEEEee-C---CCCCCeEEEEeCCC---C---------CCCCCc-----------ccCcEEEEcCCCCCCC
Q psy17058 100 QQSAPEGSQVTIECK-S---NDPSATIKWSKDNQ---E---------QLPPNM-----------IAGETLIINGITKADE 152 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~-~---~~p~~~v~W~~~~~---~---------~~~~~~-----------~~~~~L~i~~v~~~D~ 152 (471)
.+.+..|+.+.|.|. . ..+...|.|+|.+. . ...... .++-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456888999999998 3 33556899999511 0 000000 0455899999999999
Q ss_pred eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCC
Q psy17058 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND 222 (471)
Q Consensus 153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~ 222 (471)
|.|+|.+...... ......+.+. .+-.+.+..... ....-+..++.|.+ .+.|.|.+.|.-+.+.
T Consensus 100 GtY~C~fQkge~~-~~k~ehLt~V--~~~~Lsv~a~~~-dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETE-VTKQEHLSVV--KPLTLSVHSERS-QFPDFSVLTVTCTV-NAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCc-eeeeeeeeee--ecceEEEEeccc-cCCCCCeeEEEEec-CCcCCchheeccccCC
Confidence 9999999875543 2112222221 111222222111 11225677899996 9999999999987654
No 224
>smart00409 IG Immunoglobulin.
Probab=98.67 E-value=4.6e-07 Score=66.12 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=60.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeC-CCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRP-DNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
...+..|+++.|.|.+ .+.+...+.|+++ +..+....+....... ..|.|.++...|.|.|.|.+.+..+.....+
T Consensus 3 ~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3457789999999999 4557889999998 5554434444444432 5799999999999999999998777666556
Q ss_pred EEEE
Q psy17058 267 YIHV 270 (471)
Q Consensus 267 ~l~V 270 (471)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6554
No 225
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.67 E-value=4.6e-07 Score=66.12 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=60.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeC-CCCCCcCCCceEEeee--ceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRP-DNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 266 (471)
...+..|+++.|.|.+ .+.+...+.|+++ +..+....+....... ..|.|.++...|.|.|.|.+.+..+.....+
T Consensus 3 ~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3457789999999999 4557889999998 5554434444444432 5799999999999999999998777666556
Q ss_pred EEEE
Q psy17058 267 YIHV 270 (471)
Q Consensus 267 ~l~V 270 (471)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6554
No 226
>PHA03376 BARF1; Provisional
Probab=98.65 E-value=8.3e-07 Score=71.54 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=75.5
Q ss_pred EEecCCCcEEEEEEEee---cCCCeEEEEeCCcc----CC------------C---cccccccCceeEEEEeecCCCCCe
Q psy17058 284 VSVRPGEPLTLECEATG---RPMPTVSWVKYIAP----FD------------R---NLERDELTSRAVYTIASVRESDAG 341 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g---~p~~~i~W~~~~~~----~~------------~---~~~~~~~~~~~~l~i~~~~~~d~G 341 (471)
+.+..|+.+.|+|...- .+..+|.|+|.+.. +- . ........++-+|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 46778999999999752 23337999995431 00 0 011111246778999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCe
Q psy17058 342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR 421 (471)
Q Consensus 342 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~ 421 (471)
.|+|.+........+.-.|.+..+ -.+.+....
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~-----------------------------------------------~~Lsv~a~~ 133 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKP-----------------------------------------------LTLSVHSER 133 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeec-----------------------------------------------ceEEEEecc
Confidence 999999876544444334433321 112222111
Q ss_pred eeeeCCCeEEEEEEecccCCceEEEecC
Q psy17058 422 QTVKPGDIANIRCSAIGATPISIRWQPL 449 (471)
Q Consensus 422 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~ 449 (471)
.....-+...+.|.+-|+|.|.++|.-|
T Consensus 134 ~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 134 SQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred ccCCCCCeeEEEEecCCcCCchheeccc
Confidence 1111255678999988999999999876
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.64 E-value=1.6e-07 Score=68.09 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=50.4
Q ss_pred cEEEEEEEee-cCCCeEEEEeCCccCCCcccccc-------cCceeEEEEeecCCCCCeEEEEEEEcCCCce--EEEEEE
Q psy17058 291 PLTLECEATG-RPMPTVSWVKYIAPFDRNLERDE-------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITV 360 (471)
Q Consensus 291 ~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l 360 (471)
.+.|.|.+.| +|.+.++|++++..+........ ....+.|.|.....+|.|.|+|.|.|..... ..++.|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 68889999999988754321110 1123567888888889999999999986544 444444
Q ss_pred E
Q psy17058 361 A 361 (471)
Q Consensus 361 ~ 361 (471)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 3
No 228
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.64 E-value=7.2e-05 Score=68.47 Aligned_cols=258 Identities=17% Similarity=0.265 Sum_probs=144.9
Q ss_pred eeeeccceEEEEecCcEEEEEEeeeCCccE---EEeccchhhhheeeeeeeecCCCCcEEEcCCceeecCCCcEEEEeeC
Q psy17058 39 FVSAENHEVTVYEGGDAELKCNTYYAPGRW---MWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKS 115 (471)
Q Consensus 39 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~---~w~~~~~~~~~~~~c~~~~~~~~~~v~~~p~~~~v~~G~~v~l~C~~ 115 (471)
.+.=..+++.+.-|+.+.+.|.+....+.+ .|......... ..+.|....-......+.+|.++.+.=..
T Consensus 79 ~~~C~~~~vsa~yg~~v~i~C~~~~~~~~~RLeiwr~~~~~~~~-------~~~~P~~~~~~l~n~~a~~~g~l~y~sa~ 151 (466)
T PHA03270 79 PFRCKRPDVLARYGSRVQIRCRFPRPTAEFRLQIWRVAAAPSEE-------IRPAPIEPGAVLVNVTAPPGGELVYDSAP 151 (466)
T ss_pred CEEecCcccccccCccEEEEecccCCCCceEEEEEEeccCCccc-------cCCCCCCcccceeecccCCCceEEeccCc
Confidence 355556789999999999999998765432 33211000000 00000000000012234456666654331
Q ss_pred CCCCCeEEEEeCCCC-CCCC-----CcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCC
Q psy17058 116 NDPSATIKWSKDNQE-QLPP-----NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189 (471)
Q Consensus 116 ~~p~~~v~W~~~~~~-~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~ 189 (471)
..-...+.|--.-+. .++. .......|.|..++...+|.|+-...+..+. ......+.|....+|.+.+.+.
T Consensus 152 ~~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~-~~~~~~VtV~~yr~Psvsv~~~- 229 (466)
T PHA03270 152 NRTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRP-HRYGTWTRVRMFRRPSLSIRPH- 229 (466)
T ss_pred cccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCc-eeeeeEEEEEEecCCcccccCC-
Confidence 112346777533111 1111 0114457999999999999999998776665 4445557777667788777654
Q ss_pred ceeEEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCce---EEeeeceEEEeccCCCCC------eEEEEEEEcC
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVE---VYQELGVLRFNNIATGDE------GKYTCIAENS 258 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~------G~Y~C~~~~~ 258 (471)
.+.+|+...-.|.+.+.+|. ..++|++|+..+....... ....++...++.++.++. -..+|.+...
T Consensus 230 --PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~ 307 (466)
T PHA03270 230 --AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWH 307 (466)
T ss_pred --ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEc
Confidence 47799999999999776775 4799999998753221111 111122222333333332 2789998754
Q ss_pred CCc-----eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCC-CeEEEEeCCccCC
Q psy17058 259 AGK-----EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFD 316 (471)
Q Consensus 259 ~~~-----~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~~~~~ 316 (471)
... .+.+..-.|+.+|.+.+. ...|. ..|.+.-.|. ..+.|+.++....
T Consensus 308 rd~vS~sR~nAa~~P~VY~~P~Isv~------F~dG~---AVCtA~CVPegV~l~W~V~D~~~p 362 (466)
T PHA03270 308 RDSVSFSRRNATGAPTVLPRPTIEME------FGGDE---AVCTAACVPEGVTLAWLLGADPAP 362 (466)
T ss_pred cCCccceeecccccCccccCCeEEEE------EeCCE---EEEeccccCCCCEEEEEecCCCCC
Confidence 332 223334445555555433 33343 3487766554 4899998776553
No 229
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.63 E-value=6.2e-07 Score=65.96 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=63.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCe-EEEEeCCCCCCcCCCceEEe-------eeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPT-QTWIRPDNDGKFGPDVEVYQ-------ELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
.+.+.+|+.+.|.|.+ ...|.+. +.|.+++..+.......... -.+.|.|..++.+|.|.|+|.|.|....
T Consensus 12 ~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 4568899999999999 7888886 99999877533222211111 1357999999999999999999999988
Q ss_pred eEEEEEEEEE
Q psy17058 262 EVMNAYIHVL 271 (471)
Q Consensus 262 ~~~~~~l~V~ 271 (471)
.+.++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888764
No 230
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.63 E-value=1.4e-07 Score=69.57 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=48.7
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc--------------CCCceEEe-----eeceEEEeccCCCCCeEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--------------GPDVEVYQ-----ELGVLRFNNIATGDEGKYT 252 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~ 252 (471)
.+.+|+.++|.|.+ .+.+.+.+.|+++++.... ..++.... ....|.|.+++.+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 46789999999998 6678899999976633211 11111111 1246999999999999999
Q ss_pred EEEEcCCC
Q psy17058 253 CIAENSAG 260 (471)
Q Consensus 253 C~~~~~~~ 260 (471)
|.+.|..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99977543
No 231
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.60 E-value=4.4e-07 Score=66.90 Aligned_cols=64 Identities=19% Similarity=0.439 Sum_probs=47.2
Q ss_pred CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCC---------CCCcc------cCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQL---------PPNMI------AGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~---------~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
+++++.+|+++.|.|. .+.....+.|++.+...+ +.+.. ...+|.|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678999999999999 665566788887632211 11111 2347999999999999999999753
No 232
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.59 E-value=4.6e-08 Score=69.67 Aligned_cols=73 Identities=36% Similarity=0.672 Sum_probs=49.3
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEeecC-CCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 349 (471)
|.+.+.+.. ... .+..+.|.|.+.+.+ .+.+.|+ +................+.|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~-~~~-~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPP-VVT-SGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTS-EEE-TTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCC-cEe-eceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 555555433 222 233399999999877 7799999 111111122223455678899999999999999999987
No 233
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.58 E-value=3.8e-07 Score=70.31 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=50.9
Q ss_pred EcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC---------------CCCCcc-------cCcEEEEcCCCCCCC
Q psy17058 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ---------------LPPNMI-------AGETLIINGITKADE 152 (471)
Q Consensus 96 ~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~---------------~~~~~~-------~~~~L~i~~v~~~D~ 152 (471)
..|..+.+.+|++|+|.|. ...+...+.|++..... ...+.. ....|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 4566788999999999999 55577899999863211 011111 345899999999999
Q ss_pred eEEEEEEEecC
Q psy17058 153 GVYICSIQNAQ 163 (471)
Q Consensus 153 G~Y~C~~~~~~ 163 (471)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998653
No 234
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=5e-07 Score=69.68 Aligned_cols=67 Identities=21% Similarity=0.460 Sum_probs=50.3
Q ss_pred EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCC-C------------------CCCcc------cCcEEEEcCCC
Q psy17058 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ-L------------------PPNMI------AGETLIINGIT 148 (471)
Q Consensus 95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~-~------------------~~~~~------~~~~L~i~~v~ 148 (471)
...|..+.+.+|++++|.|. .+ +...+.|||..... . ..+.. ...+|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 34577889999999999999 55 66789999973210 0 01110 34689999999
Q ss_pred CCCCeEEEEEEEec
Q psy17058 149 KADEGVYICSIQNA 162 (471)
Q Consensus 149 ~~D~G~Y~C~~~~~ 162 (471)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998764
No 235
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.56 E-value=6.8e-07 Score=64.22 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=50.1
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 257 (471)
..++..|+++.|.|.. ..+.+.+.|++++..+....++... ...|.|..++..|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~--~s~~A~v~W~~ng~~l~~~~r~~~~--~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQL--RSNLASPVWLFNGTPLNAQFSYRVG--TDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCC--CCCCccEEEEECCcccCCCcceEEe--CCCCEEEECCHhhCEEEEEEEec
Confidence 4568899999999998 3346799999999986554443332 44578999999999999999873
No 236
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.52 E-value=5.3e-07 Score=69.01 Aligned_cols=69 Identities=28% Similarity=0.483 Sum_probs=49.6
Q ss_pred EEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCC---------------CCCcc-----cCcEEEEcCCCCCC
Q psy17058 94 VQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQL---------------PPNMI-----AGETLIINGITKAD 151 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~---------------~~~~~-----~~~~L~i~~v~~~D 151 (471)
+...|..+.+.+|++|+|.|. .+.. ...+.|||...... ..+.. ....|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 455677889999999999999 4443 56799998731110 00111 22479999999999
Q ss_pred CeEEEEEEEec
Q psy17058 152 EGVYICSIQNA 162 (471)
Q Consensus 152 ~G~Y~C~~~~~ 162 (471)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
No 237
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.51 E-value=9.8e-07 Score=62.64 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=53.6
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCcccc-----cccCceeEEEEeecCCCCCeEEEEEEEcCCCc-eEEEEEEEEec
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRESDAGQYKCIGKNSAGT-EEKVITVAVEH 364 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 364 (471)
+.|.|.+.| .|.+.|.|++++..+...... ......++|.+..-..+|...|+|+|.|+.-. ...+..|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 689999987 788899999999988754221 11234567888777777878999999997542 45567777764
No 238
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.49 E-value=2.1e-06 Score=63.26 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=49.8
Q ss_pred CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC--------CcCCCceEEe---eeceEEEeccCCCCCeEEEEEEEc
Q psy17058 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAEN 257 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~ 257 (471)
.+.++.+|++++|.|.+ .+.....+.|++.+..+ ....++.... ...+|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 35678899999999999 55555678888766432 2334554433 233699999999999999999975
No 239
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=1.4e-06 Score=66.56 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=55.9
Q ss_pred CCCcEEEEEEEeecC------------CCeEEEEeCCc--cCC------------Ccc--ccc-----ccCceeEEEEee
Q psy17058 288 PGEPLTLECEATGRP------------MPTVSWVKYIA--PFD------------RNL--ERD-----ELTSRAVYTIAS 334 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p------------~~~i~W~~~~~--~~~------------~~~--~~~-----~~~~~~~l~i~~ 334 (471)
.|++++|.|...... .+.|.|+|... ... ... +.. ......+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987432 35899998521 100 000 100 123678999999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
++.+|+|.|.|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888888888865
No 240
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.48 E-value=1.4e-06 Score=61.91 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=52.7
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-----eEEeeeceEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEEe
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-----EVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLT 272 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~ 272 (471)
+.|.|.+.++.|.+.|+|++++..+...... ......++|.|..-..+|+..|+|+|.|..-. ......|.|++
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6899999888999999999999775443211 11122456888777777777999999986532 45566777765
No 241
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.48 E-value=2.1e-06 Score=60.72 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=52.3
Q ss_pred EEEcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEec
Q psy17058 94 VQVTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNA 162 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 162 (471)
+++.+ +..+..|++++|+|. .+ .|.+.++|...++...........+|.+..+...|+|.++|.+...
T Consensus 3 vT~s~-~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 3 LTATS-SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EecCC-CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 44544 447899999999999 33 4455999998855544333347789999999999999999999754
No 242
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.47 E-value=1.1e-06 Score=65.42 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred CcEEEcCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCC----CC--cccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP----PN--MIAGETLIINGITKADEGVYICSIQN 161 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~----~~--~~~~~~L~i~~v~~~D~G~Y~C~~~~ 161 (471)
|.+...| ...|.+|++|+|.|....+...+.|+|++...-. .. ......+.|.+++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5666666 5569999999999984445678999999443211 11 11355789999999999999998753
No 243
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.46 E-value=1.1e-06 Score=67.77 Aligned_cols=77 Identities=16% Similarity=0.408 Sum_probs=52.0
Q ss_pred CCceeecCCCcEEEEee-CC----CCCCeEEEEeC--------------CCCCCC-------CCc-------ccCcEEEE
Q psy17058 98 PRQQSAPEGSQVTIECK-SN----DPSATIKWSKD--------------NQEQLP-------PNM-------IAGETLII 144 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~----~p~~~v~W~~~--------------~~~~~~-------~~~-------~~~~~L~i 144 (471)
+..+.+..|+++.|.|. .+ .+...+.|.+. ++.... ++. ..+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 45778999999999999 33 23468999332 122221 111 14568999
Q ss_pred cCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058 145 NGITKADEGVYICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 145 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v 175 (471)
.+++.+|+|.|+|.+.|..+. ......+.+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~-~~~~~~~~l 114 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI-VGKSSQVTL 114 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc-CCceeEEEE
Confidence 999999999999999987664 333344443
No 244
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.46 E-value=1.1e-06 Score=65.46 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=45.0
Q ss_pred CCcEEEEee-CCCCCCeEEEEeCCCCCCC-------------------CCcc--cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 106 GSQVTIECK-SNDPSATIKWSKDNQEQLP-------------------PNMI--AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 106 G~~v~l~C~-~~~p~~~v~W~~~~~~~~~-------------------~~~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
|++|+|.|. .......+.|+++...... .+.. .+.+|+|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999999 5556668999998432211 0000 45789999999999999999998876
Q ss_pred Cc
Q psy17058 164 GN 165 (471)
Q Consensus 164 ~~ 165 (471)
+.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 54
No 245
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.45 E-value=9.4e-07 Score=64.04 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=48.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce-------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEE
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-------VYQELGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIH 269 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~ 269 (471)
+.|.|.+.++.|.+.++|++++..+....... .....+.|.|.....+|.|.|+|.+.|.... ...++.|+
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 68999996567889999999987643221100 0111346778887788899999999987644 34444444
No 246
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.44 E-value=1e-07 Score=67.81 Aligned_cols=69 Identities=28% Similarity=0.583 Sum_probs=49.8
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CCCC-CCeEEEEeCCCCCCC----CCcccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDP-SATIKWSKDNQEQLP----PNMIAGETLIINGITKADEGVYICSIQN 161 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~~p-~~~v~W~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 161 (471)
+|.|.+.+.......+. +.|.|. .+.+ .+.+.|+.. ..... ......+.|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 47788887776666665 999999 5555 889999911 11100 0111567899999999999999999986
No 247
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.43 E-value=2.2e-06 Score=65.65 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEeecC------CCeEEEEeCCcc-------C-C--------C-c-cccc---ccCceeEEEEeecCCCCC
Q psy17058 288 PGEPLTLECEATGRP------MPTVSWVKYIAP-------F-D--------R-N-LERD---ELTSRAVYTIASVRESDA 340 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p------~~~i~W~~~~~~-------~-~--------~-~-~~~~---~~~~~~~l~i~~~~~~d~ 340 (471)
.|++++|.|.....| ...+.|++.... + . . . .+.. ......+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 236999986421 0 0 0 0 0000 012356899999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEec
Q psy17058 341 GQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 341 G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999998864
No 248
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.42 E-value=2e-06 Score=65.79 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCcEEEEEEEeecC------CCeEEEEeCC---ccC-------CCc------c--c---ccccCceeEEEEeecCCCCC
Q psy17058 288 PGEPLTLECEATGRP------MPTVSWVKYI---APF-------DRN------L--E---RDELTSRAVYTIASVRESDA 340 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p------~~~i~W~~~~---~~~-------~~~------~--~---~~~~~~~~~l~i~~~~~~d~ 340 (471)
.|++++|.|.....+ ...+.|++.. ... ... . + ........+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 3489999973 110 000 0 0 01123567999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEec
Q psy17058 341 GQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 341 G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888999998875
No 249
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.40 E-value=3.7e-06 Score=63.44 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-------------------CcCCCceEEeeeceEEEeccCCCCCeEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-------------------KFGPDVEVYQELGVLRFNNIATGDEGKYT 252 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 252 (471)
.+.+|+++.|.|.. ...+...++|+|..... ....+..+.. +++|.|.+++..|+|.|+
T Consensus 9 ~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 9 QVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred cccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCEEEE
Confidence 46789999999975 33334489999963221 0122333333 678999999999999999
Q ss_pred EEEEcCCC-ceEEEEEEE
Q psy17058 253 CIAENSAG-KEVMNAYIH 269 (471)
Q Consensus 253 C~~~~~~~-~~~~~~~l~ 269 (471)
|.+.+... .....+.|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 99998763 344444443
No 250
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.40 E-value=1.6e-06 Score=67.23 Aligned_cols=68 Identities=19% Similarity=0.482 Sum_probs=47.3
Q ss_pred CCceeecCCCcEEEEee-CCCC----CCeEEEEeCC---CCC--C---------------CCCc-------ccCcEEEEc
Q psy17058 98 PRQQSAPEGSQVTIECK-SNDP----SATIKWSKDN---QEQ--L---------------PPNM-------IAGETLIIN 145 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~~p----~~~v~W~~~~---~~~--~---------------~~~~-------~~~~~L~i~ 145 (471)
|..+.+.+|++++|.|. ...+ ...+.|++.. +.. + ..+. ....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 56788999999999999 3322 2469997531 110 0 0010 024579999
Q ss_pred CCCCCCCeEEEEEEEecCCc
Q psy17058 146 GITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 146 ~v~~~D~G~Y~C~~~~~~~~ 165 (471)
+++.+|+|.|+|.+.+..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999986653
No 251
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.37 E-value=3.2e-06 Score=62.82 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=51.7
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcc--cccccCceeEEEEeecCCCCCeEEEEEEE
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL--ERDELTSRAVYTIASVRESDAGQYKCIGK 348 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 348 (471)
|.+...+ ...+..|++|+|.|.... +...+.|+|++....... ..........|.|..++.+|+|.|+|...
T Consensus 2 P~l~a~p--~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP--SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC--CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4444443 346789999999998764 455899999987644221 11123446689999999999999999975
No 252
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.37 E-value=2.6e-06 Score=66.32 Aligned_cols=68 Identities=24% Similarity=0.549 Sum_probs=47.6
Q ss_pred CCceeecCCCcEEEEee-CC-C---CCCeEEEEeCCCCC--------------C---CCCcc-----------cCcEEEE
Q psy17058 98 PRQQSAPEGSQVTIECK-SN-D---PSATIKWSKDNQEQ--------------L---PPNMI-----------AGETLII 144 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~-~---p~~~v~W~~~~~~~--------------~---~~~~~-----------~~~~L~i 144 (471)
|..+.+.+|++|+|.|. .. . ....+.|++..... . ..+.. ...+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 66788999999999998 32 2 12569998742100 0 00100 2357999
Q ss_pred cCCCCCCCeEEEEEEEecCCc
Q psy17058 145 NGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 145 ~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
.+++.+|+|.|.|.+.+..+.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999986553
No 253
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.36 E-value=6e-05 Score=69.68 Aligned_cols=196 Identities=19% Similarity=0.286 Sum_probs=117.0
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEE
Q psy17058 140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWI 217 (471)
Q Consensus 140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~ 217 (471)
-.|.|..++..++|.|+-...+..+. ......+.|....+|.+.+.+. .+.+|+...-.|.+...+|. ..++|+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t-~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGT-LVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCc-eeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 35999999999999998776565554 4556677776667788777654 57799999999999766765 479999
Q ss_pred eCCCCCCcCCC----ceEEe-----eeceEEEeccCC-CCCeEEEEEEEcCCCce-----EEEEEEEEEeCCceeeCCCc
Q psy17058 218 RPDNDGKFGPD----VEVYQ-----ELGVLRFNNIAT-GDEGKYTCIAENSAGKE-----VMNAYIHVLTLPAVTITPSE 282 (471)
Q Consensus 218 ~~~~~~~~~~~----~~~~~-----~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~~~~~~ 282 (471)
+|+..+..... ..... ..++|.+..... +..-..+|.+....... +....-.|..+|.+.+
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~---- 349 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV---- 349 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE----
Confidence 99987552221 11111 122344443222 33348999987543321 1233344555555543
Q ss_pred cEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCcc----cccccCceeEEEEee---cCCCCCe--EEEEEEEc
Q psy17058 283 YVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNL----ERDELTSRAVYTIAS---VRESDAG--QYKCIGKN 349 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~---~~~~d~G--~Y~C~a~n 349 (471)
....|+ ..|.+.-.|. ..+.|+.++..-.... ...-...-+...|.+ +...| | +|+|.+..
T Consensus 350 --~F~~G~---AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~G 421 (486)
T PHA03273 350 --TVEDGD---AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIEG 421 (486)
T ss_pred --EEeCCE---EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEee
Confidence 333343 3488877665 5899988763111110 000112223444554 33343 5 99999864
No 254
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.36 E-value=4.5e-06 Score=63.84 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=54.0
Q ss_pred cCCeEEEEEEccCCCC-----------CCeEEEEeCCCC--C--------------CcCCCceEEe-----eeceEEEec
Q psy17058 195 VGDRADIQCVLEAGEP-----------SPTQTWIRPDND--G--------------KFGPDVEVYQ-----ELGVLRFNN 242 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p-----------~~~v~W~~~~~~--~--------------~~~~~~~~~~-----~~~~l~i~~ 242 (471)
.|++++|.|......+ .+.+.|+|.... . ....++.+.. .+..|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 3899999998843221 358999985321 0 1112333322 356899999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 243 IATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777777777765
No 255
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.35 E-value=4.2e-06 Score=63.31 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCcEEEEEEEeecCC---CeEEEEeCCccC-----------CC----c--cccc-----ccCceeEEEEeecCCCCCeEE
Q psy17058 289 GEPLTLECEATGRPM---PTVSWVKYIAPF-----------DR----N--LERD-----ELTSRAVYTIASVRESDAGQY 343 (471)
Q Consensus 289 g~~v~l~C~~~g~p~---~~i~W~~~~~~~-----------~~----~--~~~~-----~~~~~~~l~i~~~~~~d~G~Y 343 (471)
|++++|.|....... ..+.|++..... .. . .+.. ......+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 788999999863222 258888754211 00 0 0100 112357899999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy17058 344 KCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 344 ~C~a~n~~g~~~~~~~l~V 362 (471)
+|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888876
No 256
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.35 E-value=3.3e-06 Score=64.59 Aligned_cols=71 Identities=24% Similarity=0.462 Sum_probs=48.1
Q ss_pred CCCcEEEEee-CCC------CCCeEEEEeCC--CC-C------CCC------Cc----------ccCcEEEEcCCCCCCC
Q psy17058 105 EGSQVTIECK-SND------PSATIKWSKDN--QE-Q------LPP------NM----------IAGETLIINGITKADE 152 (471)
Q Consensus 105 ~G~~v~l~C~-~~~------p~~~v~W~~~~--~~-~------~~~------~~----------~~~~~L~i~~v~~~D~ 152 (471)
.|++|+|.|. ... ....+.|++.. .. . ... .. ....+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 4899999999 332 35689999972 11 0 000 00 0456899999999999
Q ss_pred eEEEEEEEecCCceeeeeEEEEEe
Q psy17058 153 GVYICSIQNAQGNVFQDYASIQVD 176 (471)
Q Consensus 153 G~Y~C~~~~~~~~~~~~~~~l~v~ 176 (471)
|.|.|.+.+..+. ......|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEE
Confidence 9999999986544 4444455543
No 257
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=2.3e-06 Score=64.37 Aligned_cols=60 Identities=27% Similarity=0.546 Sum_probs=43.7
Q ss_pred eecCCCcEEEEee-CCC--CCCeEEEEeCCCCCCC---------------CCcc-----cCcEEEEcCCCCCCCeEEEEE
Q psy17058 102 SAPEGSQVTIECK-SND--PSATIKWSKDNQEQLP---------------PNMI-----AGETLIINGITKADEGVYICS 158 (471)
Q Consensus 102 ~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~~---------------~~~~-----~~~~L~i~~v~~~D~G~Y~C~ 158 (471)
.+.+|++|+|.|. .+. ....+.||+......+ .+.. ....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 5789999999999 443 4567999997322111 0111 334799999999999999999
Q ss_pred EEe
Q psy17058 159 IQN 161 (471)
Q Consensus 159 ~~~ 161 (471)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 258
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.34 E-value=4.9e-06 Score=63.66 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=53.5
Q ss_pred cCCeEEEEEEccCC-----CCCCeEEEEeCCCCC-C-----------------cCCCceEEe---eeceEEEeccCCCCC
Q psy17058 195 VGDRADIQCVLEAG-----EPSPTQTWIRPDNDG-K-----------------FGPDVEVYQ---ELGVLRFNNIATGDE 248 (471)
Q Consensus 195 ~g~~~~L~C~~~~~-----~p~~~v~W~~~~~~~-~-----------------~~~~~~~~~---~~~~l~i~~~~~~d~ 248 (471)
.|+.++|.|..... .....+.|+|..... + ...++.+.. ....|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999987322 123579999964210 0 112222211 134799999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEE
Q psy17058 249 GKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 249 G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888888888775
No 259
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.33 E-value=0.0003 Score=64.04 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=106.0
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCCc-eeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEE
Q psy17058 140 ETLIINGITKADEGVYICSIQNAQGN-VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTW 216 (471)
Q Consensus 140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W 216 (471)
-.|.|.++...|+|.|.-...+.... .......+.+ ..-+|.+.+.+. .+.+|+...-.|.+...+|+ ..++|
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v-~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRV-CQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEE-EecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEE
Confidence 37899999999999665444443222 1222222222 234555666654 46799999999999766776 47999
Q ss_pred EeCCCCCCcCCCceEE----------eeeceEEEeccCCCCCeEEEEEEEcCCCce----EEEEEEEEEeCCceeeCCCc
Q psy17058 217 IRPDNDGKFGPDVEVY----------QELGVLRFNNIATGDEGKYTCIAENSAGKE----VMNAYIHVLTLPAVTITPSE 282 (471)
Q Consensus 217 ~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~V~~~p~~~~~~~~ 282 (471)
++||............ ..-++|.+.+...+..-..+|.+....... +.++.-.|..+|.+.+
T Consensus 283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv---- 358 (490)
T PHA03271 283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL---- 358 (490)
T ss_pred EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE----
Confidence 9998764322111110 112234443333333448999987644322 2222233444444433
Q ss_pred cEEecCCCcEEEEEEEeecCC-CeEEEEeCCccCCCccc-----ccccCceeEEEEee-cCCCCC---eEEEEEEEc
Q psy17058 283 YVSVRPGEPLTLECEATGRPM-PTVSWVKYIAPFDRNLE-----RDELTSRAVYTIAS-VRESDA---GQYKCIGKN 349 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~-----~~~~~~~~~l~i~~-~~~~d~---G~Y~C~a~n 349 (471)
....|+ ..|.+.-.|. .++.|+-++........ ..-....+...|.+ .-.+|. -.|+|++..
T Consensus 359 --~FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 359 --AFKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred --EEeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence 334443 3477765553 48999987765432211 00011123334444 222332 489999764
No 260
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.32 E-value=2e-06 Score=65.83 Aligned_cols=63 Identities=29% Similarity=0.495 Sum_probs=46.2
Q ss_pred eecCCCcEEEEee-CCC-CCCeEEEEeCCCCCC------------------CCCcc-------cCcEEEEcCCCCCCCeE
Q psy17058 102 SAPEGSQVTIECK-SND-PSATIKWSKDNQEQL------------------PPNMI-------AGETLIINGITKADEGV 154 (471)
Q Consensus 102 ~v~~G~~v~l~C~-~~~-p~~~v~W~~~~~~~~------------------~~~~~-------~~~~L~i~~v~~~D~G~ 154 (471)
.+.+|++++|.|. ... +...+.|++...... ..+.. ...+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 5789999999999 443 667899999733110 01111 23489999999999999
Q ss_pred EEEEEEecCC
Q psy17058 155 YICSIQNAQG 164 (471)
Q Consensus 155 Y~C~~~~~~~ 164 (471)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987553
No 261
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.32 E-value=1.7e-06 Score=64.76 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=49.3
Q ss_pred cCCCcEEEEee-CC-CCCCeEEEEeCCCCCC--------C----------CCcc---cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058 104 PEGSQVTIECK-SN-DPSATIKWSKDNQEQL--------P----------PNMI---AGETLIINGITKADEGVYICSIQ 160 (471)
Q Consensus 104 ~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~--------~----------~~~~---~~~~L~i~~v~~~D~G~Y~C~~~ 160 (471)
..|++|+|.|. .. .....+.|++.....+ . .+.. ...+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998 43 4556899998621100 0 0011 34789999999999999999999
Q ss_pred ecCCceeeeeEEEEE
Q psy17058 161 NAQGNVFQDYASIQV 175 (471)
Q Consensus 161 ~~~~~~~~~~~~l~v 175 (471)
...+........|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877653444444443
No 262
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.32 E-value=6.8e-05 Score=69.51 Aligned_cols=198 Identities=16% Similarity=0.217 Sum_probs=115.2
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCC--CeEEEE
Q psy17058 140 ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS--PTQTWI 217 (471)
Q Consensus 140 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~--~~v~W~ 217 (471)
-.|.|.+++..++|.|.=.+.+...........+.|....+|.+.+.+. .+.+|+...-.|.+...+|. ..++|+
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf 365 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWT 365 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 3699999999999999877654332214445667777667787776654 57799999999999766765 479999
Q ss_pred eCCCCCCcC---CCceEEee-----eceEEEeccCCCC--CeEEEEEEEcCCCce-----EEEEEEEEEeCCceeeCCCc
Q psy17058 218 RPDNDGKFG---PDVEVYQE-----LGVLRFNNIATGD--EGKYTCIAENSAGKE-----VMNAYIHVLTLPAVTITPSE 282 (471)
Q Consensus 218 ~~~~~~~~~---~~~~~~~~-----~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~~~~~~ 282 (471)
+|+..+... .......+ .++|.+......| --..+|.+....... +.+..-.|+.+|.+.+
T Consensus 366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm---- 441 (566)
T PHA03269 366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI---- 441 (566)
T ss_pred eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE----
Confidence 998775531 11111121 2234432211111 336799987543321 2333444555555543
Q ss_pred cEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCcccc---cccCceeEEEEee---cCCCC-CeEEEEEEEc
Q psy17058 283 YVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNLER---DELTSRAVYTIAS---VRESD-AGQYKCIGKN 349 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~---~~~~d-~G~Y~C~a~n 349 (471)
....|+ ..|.+.-.|. ..+.|+.++......... .-...-+...|.+ +...| --+|+|++..
T Consensus 442 --~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 442 --EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred --EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence 333443 3488776665 379999877664321110 0111223444444 33333 2389999764
No 263
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.32 E-value=3.9e-06 Score=62.95 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=46.3
Q ss_pred CCcEEEEee-CCCC-CCeEEEEeCCCCCC--------------CCCcc----------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058 106 GSQVTIECK-SNDP-SATIKWSKDNQEQL--------------PPNMI----------AGETLIINGITKADEGVYICSI 159 (471)
Q Consensus 106 G~~v~l~C~-~~~p-~~~v~W~~~~~~~~--------------~~~~~----------~~~~L~i~~v~~~D~G~Y~C~~ 159 (471)
|++|+|.|. .... ...+.|+|..+... ..... ...+|+|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998 4332 23699998633210 00000 3568999999999999999998
Q ss_pred EecCCceeeeeEEEEE
Q psy17058 160 QNAQGNVFQDYASIQV 175 (471)
Q Consensus 160 ~~~~~~~~~~~~~l~v 175 (471)
.............|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7544332555555555
No 264
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.32 E-value=2e-06 Score=66.87 Aligned_cols=70 Identities=23% Similarity=0.537 Sum_probs=51.8
Q ss_pred cEEEcCCceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCC----CC----------------CCcc-------cCcEEE
Q psy17058 93 EVQVTPRQQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQ----LP----------------PNMI-------AGETLI 143 (471)
Q Consensus 93 ~v~~~p~~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~----~~----------------~~~~-------~~~~L~ 143 (471)
.++..|..+.+.+|+++.|.|. . ......+.|++..... +. .+.. ...+|.
T Consensus 3 ~vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 3 QVTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred eEEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 3555678889999999999999 5 4566689999963311 00 0000 234799
Q ss_pred EcCCCCCCCeEEEEEEEec
Q psy17058 144 INGITKADEGVYICSIQNA 162 (471)
Q Consensus 144 i~~v~~~D~G~Y~C~~~~~ 162 (471)
|.+++.+|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999876
No 265
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.32 E-value=4.5e-06 Score=64.29 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=51.9
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC--------------Ccccc--cccCceeEEEEeecCCCCCeEE
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD--------------RNLER--DELTSRAVYTIASVRESDAGQY 343 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~--------------~~~~~--~~~~~~~~l~i~~~~~~d~G~Y 343 (471)
..+.+.+|++++|.|.+.+.+...+.|++.... .. ..... ........|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 356889999999999998777779999985321 00 00000 1123567899999999999999
Q ss_pred EEEEEcCCC
Q psy17058 344 KCIGKNSAG 352 (471)
Q Consensus 344 ~C~a~n~~g 352 (471)
.|.+.+..+
T Consensus 86 ~C~~~~~~~ 94 (109)
T cd04983 86 FCALSESGG 94 (109)
T ss_pred EEEEecCCC
Confidence 999997653
No 266
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.32 E-value=2.8e-06 Score=63.19 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCc-----------------ccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRN-----------------LERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
|++|+|.|.........+.|++........ ..+.....+.+|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999999876555589999876443210 011112344789999999999999999999876
Q ss_pred Cce-EEEEEEE
Q psy17058 352 GTE-EKVITVA 361 (471)
Q Consensus 352 g~~-~~~~~l~ 361 (471)
|.. ...+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 543 4555554
No 267
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.27 E-value=9.2e-06 Score=62.32 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=55.5
Q ss_pred CCCcEEEEEEEeecC----------CCeEEEEeCC--ccCC------------Ccc--cc-----cccCceeEEEEeecC
Q psy17058 288 PGEPLTLECEATGRP----------MPTVSWVKYI--APFD------------RNL--ER-----DELTSRAVYTIASVR 336 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p----------~~~i~W~~~~--~~~~------------~~~--~~-----~~~~~~~~l~i~~~~ 336 (471)
.|++++|.|.....+ ...+.|++.. .... ... +. .......+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999987543 2469999852 1110 000 10 012355789999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 337 ESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999877888888888864
No 268
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.25 E-value=5e-06 Score=61.66 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=52.7
Q ss_pred CcEEEcCCceeecCCCcEEEEee--CCCCCCe--EEEEeCCCCCCCCCcc---------cCcEEEEcCCCCCCCeEEEEE
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECK--SNDPSAT--IKWSKDNQEQLPPNMI---------AGETLIINGITKADEGVYICS 158 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~--v~W~~~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~ 158 (471)
-.|.+.+....+.+|+.++|.|. .+.|.+. +.||++ +..+..... ...+|.+..-..+|...|+|+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG-~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG-NETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeC-CEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 45677777777899999999999 6778886 799999 554433211 345677765555566699999
Q ss_pred EEecCCc
Q psy17058 159 IQNAQGN 165 (471)
Q Consensus 159 ~~~~~~~ 165 (471)
|.+....
T Consensus 81 A~l~l~~ 87 (100)
T cd05755 81 TELDLRP 87 (100)
T ss_pred EEeccCc
Confidence 9876543
No 269
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.24 E-value=8.4e-06 Score=62.81 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=50.3
Q ss_pred ccEEecCCCcEEEEEEEeecCCCeEEEEeCCcc--CC------------------Ccccc-cccCceeEEEEeecCCCCC
Q psy17058 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP--FD------------------RNLER-DELTSRAVYTIASVRESDA 340 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~--~~------------------~~~~~-~~~~~~~~l~i~~~~~~d~ 340 (471)
..+.+.+|++++|.|.+.+ +...+.|+|.... .. ..... ........|.|.+++.+|+
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 3568899999999999987 6678999986431 11 00000 0112457899999999999
Q ss_pred eEEEEEEEcCCC
Q psy17058 341 GQYKCIGKNSAG 352 (471)
Q Consensus 341 G~Y~C~a~n~~g 352 (471)
|.|.|.+.+..+
T Consensus 85 g~Y~Ca~~~~~~ 96 (110)
T cd05899 85 AVYLCASSLGGG 96 (110)
T ss_pred EEEEEEeeCCCC
Confidence 999999987543
No 270
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.23 E-value=9.3e-06 Score=61.13 Aligned_cols=74 Identities=18% Similarity=0.390 Sum_probs=49.5
Q ss_pred CeEEEEEEccCCC--CCCeEEEEeCCCCC-----------------CcCCCceEEe---eeceEEEeccCCCCCeEEEEE
Q psy17058 197 DRADIQCVLEAGE--PSPTQTWIRPDNDG-----------------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCI 254 (471)
Q Consensus 197 ~~~~L~C~~~~~~--p~~~v~W~~~~~~~-----------------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~ 254 (471)
++++|.|...... ....+.|+|..... ....+..+.. ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999884333 23479999965420 0011222221 245799999999999999999
Q ss_pred EEc-CCCceEEEEEEEE
Q psy17058 255 AEN-SAGKEVMNAYIHV 270 (471)
Q Consensus 255 ~~~-~~~~~~~~~~l~V 270 (471)
+.. ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5667777777766
No 271
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.23 E-value=1.1e-05 Score=60.77 Aligned_cols=73 Identities=27% Similarity=0.397 Sum_probs=51.5
Q ss_pred CcEEEEEEEeecC---CCeEEEEeCCccCC---------------Cc--ccccc---cCceeEEEEeecCCCCCeEEEEE
Q psy17058 290 EPLTLECEATGRP---MPTVSWVKYIAPFD---------------RN--LERDE---LTSRAVYTIASVRESDAGQYKCI 346 (471)
Q Consensus 290 ~~v~l~C~~~g~p---~~~i~W~~~~~~~~---------------~~--~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~ 346 (471)
++++|.|.....+ ...+.|+|....-. .. .+... .....+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987644 33799999653200 00 00000 11467999999999999999999
Q ss_pred EEc-CCCceEEEEEEEE
Q psy17058 347 GKN-SAGTEEKVITVAV 362 (471)
Q Consensus 347 a~n-~~g~~~~~~~l~V 362 (471)
+.+ +.|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6788888888877
No 272
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.22 E-value=4.8e-06 Score=64.91 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=48.3
Q ss_pred EcCCceeecCCCcEEEEee-CC--CCCCeEEEEeCCCCCC--------------------CCCcc-------cCcEEEEc
Q psy17058 96 VTPRQQSAPEGSQVTIECK-SN--DPSATIKWSKDNQEQL--------------------PPNMI-------AGETLIIN 145 (471)
Q Consensus 96 ~~p~~~~v~~G~~v~l~C~-~~--~p~~~v~W~~~~~~~~--------------------~~~~~-------~~~~L~i~ 145 (471)
..|..+.+.+|++|+|.|. .+ .+...+.||+.....- ..+.. ....|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3466788999999999999 44 5677899999621110 11111 23579999
Q ss_pred CCCCCCCeEEEEEEEe
Q psy17058 146 GITKADEGVYICSIQN 161 (471)
Q Consensus 146 ~v~~~D~G~Y~C~~~~ 161 (471)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 273
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.22 E-value=1.2e-05 Score=60.71 Aligned_cols=75 Identities=24% Similarity=0.420 Sum_probs=49.0
Q ss_pred CCeEEEEEEccCCC--CCCeEEEEeCCCCC-----------C------cCCCceEE-----eeeceEEEeccCCCCCeEE
Q psy17058 196 GDRADIQCVLEAGE--PSPTQTWIRPDNDG-----------K------FGPDVEVY-----QELGVLRFNNIATGDEGKY 251 (471)
Q Consensus 196 g~~~~L~C~~~~~~--p~~~v~W~~~~~~~-----------~------~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y 251 (471)
|++++|.|...... ....+.|++..... . ...+..+. ....+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999873221 12368888754211 0 11222221 1235799999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy17058 252 TCIAENSAGKEVMNAYIHV 270 (471)
Q Consensus 252 ~C~~~~~~~~~~~~~~l~V 270 (471)
+|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666665
No 274
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.21 E-value=9.2e-06 Score=63.27 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=49.6
Q ss_pred EEEcCCceeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCC---------------CCCcc-------cCcEEEEcCCCC
Q psy17058 94 VQVTPRQQSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQL---------------PPNMI-------AGETLIINGITK 149 (471)
Q Consensus 94 v~~~p~~~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~---------------~~~~~-------~~~~L~i~~v~~ 149 (471)
+...|..+.+.+|++|+|.|. .. .....+.|++...... .++.. ...+|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 445677888999999999999 33 3456799999622110 11111 234799999999
Q ss_pred CCCeEEEEEEEec
Q psy17058 150 ADEGVYICSIQNA 162 (471)
Q Consensus 150 ~D~G~Y~C~~~~~ 162 (471)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999998753
No 275
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.21 E-value=8.4e-06 Score=60.46 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=51.1
Q ss_pred EecCCCcEEEEEEEee-cCCCe--EEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 285 SVRPGEPLTLECEATG-RPMPT--VSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g-~p~~~--i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
.+.+|+.++|+|.+.| .|.+. |.|++++..+....... ......+|++.....+|.-.|+|+|.+..+..
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 5689999999999987 77775 79999998886532211 13345677776655666669999999876643
No 276
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.20 E-value=8.6e-06 Score=58.84 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=43.5
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCcccccc------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERDE------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
+.|.|.+.+ +|.+++.|+++++.+........ ....+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999987 58889999999988753321111 1123445555555667779999999986643
No 277
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.20 E-value=1.1e-05 Score=58.22 Aligned_cols=63 Identities=19% Similarity=0.368 Sum_probs=43.9
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCccccc-c------cCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLERD-E------LTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
+.|+|.+.| +|.+.|+|+++|+.+....... . ....+.|.+.....++...|+|.|.|.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 6888999999998876432101 1 1122445555556677789999999986543
No 278
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.19 E-value=1.4e-05 Score=58.99 Aligned_cols=68 Identities=25% Similarity=0.496 Sum_probs=45.2
Q ss_pred CcEEEEee--CCCCCCeEEEEeCCCCC------------------CCCCcc------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058 107 SQVTIECK--SNDPSATIKWSKDNQEQ------------------LPPNMI------AGETLIINGITKADEGVYICSIQ 160 (471)
Q Consensus 107 ~~v~l~C~--~~~p~~~v~W~~~~~~~------------------~~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~ 160 (471)
++++|.|. .......|.|.|..+.. ..++.. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36889998 33344588998752211 001111 46799999999999999999986
Q ss_pred e-cCCceeeeeEEEEE
Q psy17058 161 N-AQGNVFQDYASIQV 175 (471)
Q Consensus 161 ~-~~~~~~~~~~~l~v 175 (471)
. +.|. ......|.|
T Consensus 81 tfP~G~-~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGN-TQSSTTVTV 95 (96)
T ss_pred eCCCCC-eeEEEEEEE
Confidence 5 4454 666666655
No 279
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.18 E-value=7e-06 Score=61.42 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEEeec-CC-CeEEEEeCCccCCCccc--cc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 287 RPGEPLTLECEATGR-PM-PTVSWVKYIAPFDRNLE--RD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 287 ~~g~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
..|+.+.|.|.+.|+ |. +.++|+++|..+..... .. .....+.|.+.....++.+.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999996 64 58999999988764321 01 1122345667777777999999999997664
No 280
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.18 E-value=5.2e-06 Score=62.16 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=51.9
Q ss_pred cCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-----------------CCCceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-----------------GPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 257 (471)
.|++|+|.|..........+.|++....+.. ..++.+...+..|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 6999999998733244568999986421110 11233333346899999999999999999987
Q ss_pred CCCc-eEEEEEEEE
Q psy17058 258 SAGK-EVMNAYIHV 270 (471)
Q Consensus 258 ~~~~-~~~~~~l~V 270 (471)
..+. ....+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 7654 355566655
No 281
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.18 E-value=1.9e-05 Score=60.86 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=49.4
Q ss_pred cEEecCCCcEEEEEEEeecC----CCeEEEEe---------------CCccCCCc-----ccc----cccCceeEEEEee
Q psy17058 283 YVSVRPGEPLTLECEATGRP----MPTVSWVK---------------YIAPFDRN-----LER----DELTSRAVYTIAS 334 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p----~~~i~W~~---------------~~~~~~~~-----~~~----~~~~~~~~l~i~~ 334 (471)
.+.+..|+++.|.|...... ...+.|.+ ++...... .+. .......++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 45788899999999987533 23799943 22221100 000 1124567899999
Q ss_pred cCCCCCeEEEEEEEcCCCce
Q psy17058 335 VRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 335 ~~~~d~G~Y~C~a~n~~g~~ 354 (471)
++.+|.|.|+|.+.|..+..
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CCcccCEEEEEEEEcCCCcC
Confidence 99999999999999986644
No 282
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.17 E-value=6.8e-06 Score=62.81 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=49.0
Q ss_pred EecCCCcEEEEEEEeec-CCCeEEEEeCCcc--CC-----------------Ccccccc--cCceeEEEEeecCCCCCeE
Q psy17058 285 SVRPGEPLTLECEATGR-PMPTVSWVKYIAP--FD-----------------RNLERDE--LTSRAVYTIASVRESDAGQ 342 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~-p~~~i~W~~~~~~--~~-----------------~~~~~~~--~~~~~~l~i~~~~~~d~G~ 342 (471)
.+.+|++++|.|.+.+. +...+.|++.... .. ....... .....+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999875 5568999985431 10 0000001 1145689999999999999
Q ss_pred EEEEEEcCCC
Q psy17058 343 YKCIGKNSAG 352 (471)
Q Consensus 343 Y~C~a~n~~g 352 (471)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 283
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=2.1e-05 Score=58.16 Aligned_cols=74 Identities=18% Similarity=0.374 Sum_probs=50.4
Q ss_pred CeEEEEEEccCCCCCCeEEEEeCCCCC-----------------CcCCCceEE---eeeceEEEeccCCCCCeEEEEEEE
Q psy17058 197 DRADIQCVLEAGEPSPTQTWIRPDNDG-----------------KFGPDVEVY---QELGVLRFNNIATGDEGKYTCIAE 256 (471)
Q Consensus 197 ~~~~L~C~~~~~~p~~~v~W~~~~~~~-----------------~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~ 256 (471)
+.++|.|..........++|.|..... ....+..+. ..+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 368999998433344589998853210 111222221 125689999999999999999976
Q ss_pred c-CCCceEEEEEEEE
Q psy17058 257 N-SAGKEVMNAYIHV 270 (471)
Q Consensus 257 ~-~~~~~~~~~~l~V 270 (471)
. +.|..+.++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 4 6777888888776
No 284
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.16 E-value=2.2e-05 Score=60.24 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCeEEEEEEccCCCC---------CCeEEEEeCCC--CC--------------CcCCCceEE-----eeeceEEEeccCC
Q psy17058 196 GDRADIQCVLEAGEP---------SPTQTWIRPDN--DG--------------KFGPDVEVY-----QELGVLRFNNIAT 245 (471)
Q Consensus 196 g~~~~L~C~~~~~~p---------~~~v~W~~~~~--~~--------------~~~~~~~~~-----~~~~~l~i~~~~~ 245 (471)
|++++|.|......+ ...+.|+|... .. ....+..+. .....|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 889999998843222 36799998632 10 011222221 1245799999999
Q ss_pred CCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058 246 GDEGKYTCIAENSAGKEVMNAYIHVLT 272 (471)
Q Consensus 246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 272 (471)
+|+|.|.|.+..........+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998766777788888764
No 285
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.15 E-value=2.2e-05 Score=59.92 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=50.7
Q ss_pred EeCCceeeCCCccEEecCCCcEEEEEEEee-cCC-CeEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCe
Q psy17058 271 LTLPAVTITPSEYVSVRPGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAG 341 (471)
Q Consensus 271 ~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G 341 (471)
..+|...+..........|+.++|.|.+.| +|. .+++|++||+.+....... .....+.|.+.....++.-
T Consensus 3 ~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~ 82 (111)
T cd05772 3 RAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHS 82 (111)
T ss_pred ccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccC
Confidence 445554443322334567888999999998 564 4899999999875421111 1112334545543333333
Q ss_pred EEEEEEEcCCCce
Q psy17058 342 QYKCIGKNSAGTE 354 (471)
Q Consensus 342 ~Y~C~a~n~~g~~ 354 (471)
.|+|.+.+.....
T Consensus 83 ~ytC~V~H~~l~~ 95 (111)
T cd05772 83 QVTCEVQHRTLQA 95 (111)
T ss_pred ceEEEEEeCCCCC
Confidence 6999999976443
No 286
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.15 E-value=3.3e-05 Score=57.63 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=33.4
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKN-SAGTEEKVITVAV 362 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V 362 (471)
...+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 457899999999999999999999 7888888888887
No 287
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.14 E-value=2e-05 Score=58.80 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=29.1
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEe-cCCceeeeeEEEEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQN-AQGNVFQDYASIQV 175 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~~l~v 175 (471)
.+.+|.|.+++.+|+|.|+|.+.+ +.|. .+....|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 457999999999999999999998 4554 555555554
No 288
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.13 E-value=3e-05 Score=54.95 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=55.0
Q ss_pred EecCCCcEEEEEEEeecC--CCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 285 SVRPGEPLTLECEATGRP--MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
.+..|++++|+|.....+ .+.++|...+.... ........+|.+..++..|+|.++|.+.-..-.....+.|.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 677899999999996534 44899997655422 112356779999999999999999999865444455555555
Q ss_pred e
Q psy17058 363 E 363 (471)
Q Consensus 363 ~ 363 (471)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 3
No 289
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=64.01 Aligned_cols=78 Identities=22% Similarity=0.418 Sum_probs=55.6
Q ss_pred ceeecCCCcEEEEee-C-CCCCCeEEEEeCCCCC---------CC----CCcc------cCcEEEEcCCCCCCCeEEEEE
Q psy17058 100 QQSAPEGSQVTIECK-S-NDPSATIKWSKDNQEQ---------LP----PNMI------AGETLIINGITKADEGVYICS 158 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~-~-~~p~~~v~W~~~~~~~---------~~----~~~~------~~~~L~i~~v~~~D~G~Y~C~ 158 (471)
.++|.+|++|+|.|. . +.....+.|+|.++.. +. ++.. ....|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 457999999999999 3 5567889999973211 10 1111 457899999999999999999
Q ss_pred EEec-CCceeeeeEEEEEee
Q psy17058 159 IQNA-QGNVFQDYASIQVDK 177 (471)
Q Consensus 159 ~~~~-~~~~~~~~~~l~v~~ 177 (471)
...- .|...+....|.|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 8653 341366666777764
No 290
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.10 E-value=2.1e-05 Score=59.24 Aligned_cols=36 Identities=33% Similarity=0.617 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCCCCeEEEEEEEe-cCCceeeeeEEEEE
Q psy17058 139 GETLIINGITKADEGVYICSIQN-AQGNVFQDYASIQV 175 (471)
Q Consensus 139 ~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~~l~v 175 (471)
..+|+|.+++.+|+|.|.|.+.+ +.|. ......|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 56899999999999999999987 4444 444444443
No 291
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.10 E-value=8.8e-06 Score=61.13 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=51.4
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEee-cC-CCeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEE
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATG-RP-MPTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQY 343 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p-~~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y 343 (471)
|.+.+.+........++.++|.|.+.| +| ...+.|+++|..+..... .......+.|.+.....++...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 444444433334446788999999999 66 348999999988753211 11122334555655555567799
Q ss_pred EEEEEcCCCce
Q psy17058 344 KCIGKNSAGTE 354 (471)
Q Consensus 344 ~C~a~n~~g~~ 354 (471)
+|.|.+.....
T Consensus 82 sC~V~H~~l~~ 92 (100)
T cd07699 82 TCEVTHEGLSS 92 (100)
T ss_pred EEEEEecCCCC
Confidence 99999876433
No 292
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.10 E-value=4.1e-05 Score=59.28 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=48.5
Q ss_pred ccEEecCCCcEEEEEEEeecC----CCeEEEEeC---Ccc---CC---C--------cc--cc----cccCceeEEEEee
Q psy17058 282 EYVSVRPGEPLTLECEATGRP----MPTVSWVKY---IAP---FD---R--------NL--ER----DELTSRAVYTIAS 334 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~g~p----~~~i~W~~~---~~~---~~---~--------~~--~~----~~~~~~~~l~i~~ 334 (471)
..+.+.+|++++|.|.....+ ...+.|++. +.. +- . .. +. .......+|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 356788999999999986533 236999752 111 00 0 00 00 0122456899999
Q ss_pred cCCCCCeEEEEEEEcCCCc
Q psy17058 335 VRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 335 ~~~~d~G~Y~C~a~n~~g~ 353 (471)
++.+|+|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999987654
No 293
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.09 E-value=1.6e-05 Score=60.71 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=47.7
Q ss_pred cEEecCCCcEEEEEEEeecC-CCeEEEEeCCc--cCC----------C----cccccccCceeEEEEeecCCCCCeEEEE
Q psy17058 283 YVSVRPGEPLTLECEATGRP-MPTVSWVKYIA--PFD----------R----NLERDELTSRAVYTIASVRESDAGQYKC 345 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~--~~~----------~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 345 (471)
.+.+.+|++++|.|.+.+.. ...+.|+|... ... . ............|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 46789999999999997655 45799997532 110 0 0111112244679999999999999999
Q ss_pred EEEcC
Q psy17058 346 IGKNS 350 (471)
Q Consensus 346 ~a~n~ 350 (471)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 98764
No 294
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.09 E-value=1.7e-05 Score=60.64 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=42.6
Q ss_pred eecCCCcEEEEee-CC-CCCCeEEEEeCCCCC--C---------------------CCCcc-------cCcEEEEcCCCC
Q psy17058 102 SAPEGSQVTIECK-SN-DPSATIKWSKDNQEQ--L---------------------PPNMI-------AGETLIINGITK 149 (471)
Q Consensus 102 ~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~--~---------------------~~~~~-------~~~~L~i~~v~~ 149 (471)
.+.+|++|+|.|. .. .....+.||+..... . ..+.. ....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5889999999998 43 334579999984321 0 00110 123699999999
Q ss_pred CCCeEEEEEEEe
Q psy17058 150 ADEGVYICSIQN 161 (471)
Q Consensus 150 ~D~G~Y~C~~~~ 161 (471)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999753
No 295
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.05 E-value=3.8e-05 Score=55.45 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=43.2
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce-------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE-------VYQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
++|.|.+.+++|.+.|+|++++..+....... .+...+.|.|.....++...|+|++.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 68999997778999999999987654322111 1111234555555667778999999987643
No 296
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.05 E-value=1.9e-05 Score=56.97 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=44.1
Q ss_pred EEEEEEEee-cCCCeEEEEeCCccCCCcccc-------cccCceeEEEEeecCCCCCeEEEEEEEcCCCc
Q psy17058 292 LTLECEATG-RPMPTVSWVKYIAPFDRNLER-------DELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 292 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
+.|.|.+.| +|.+.++|+++|..+...... ......+.|.+.....++...|+|+|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 777899999999987643210 11123456666665566777999999997554
No 297
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.05 E-value=3.3e-05 Score=55.75 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=43.0
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCce------EEeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE------VYQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
+.|.|.+.+++|.+.++|+++++.+....... .+...+.|.+.....++.+.|+|++.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999997778999999999987654221111 1111334556555666778999999987544
No 298
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.03 E-value=3.9e-05 Score=57.51 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=51.4
Q ss_pred CCcEEEEEEEeecCCC-eEEEEeCCccCC---------------Cccc-----ccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058 289 GEPLTLECEATGRPMP-TVSWVKYIAPFD---------------RNLE-----RDELTSRAVYTIASVRESDAGQYKCIG 347 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~-~i~W~~~~~~~~---------------~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a 347 (471)
|++++|.|........ .+.|++...... .... ........+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999997644333 699998532100 0000 011234678999999999999999998
Q ss_pred E-cCCCceEEEEEEEE
Q psy17058 348 K-NSAGTEEKVITVAV 362 (471)
Q Consensus 348 ~-n~~g~~~~~~~l~V 362 (471)
. .+.|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56788888888877
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.03 E-value=5.3e-05 Score=57.03 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=49.2
Q ss_pred cEEEEEEEeecC---CCeEEEEeCCcc-----CC-----------C----cccc--cccCceeEEEEeecCCCCCeEEEE
Q psy17058 291 PLTLECEATGRP---MPTVSWVKYIAP-----FD-----------R----NLER--DELTSRAVYTIASVRESDAGQYKC 345 (471)
Q Consensus 291 ~v~l~C~~~g~p---~~~i~W~~~~~~-----~~-----------~----~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C 345 (471)
+++|.|.....+ ...+.|++.... +. . .... .......+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999986433 237899984321 00 0 0000 012246789999999999999999
Q ss_pred EEEc-CCCceEEEEEEEE
Q psy17058 346 IGKN-SAGTEEKVITVAV 362 (471)
Q Consensus 346 ~a~n-~~g~~~~~~~l~V 362 (471)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 7787777888876
No 300
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.02 E-value=2.7e-05 Score=60.87 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=46.0
Q ss_pred CCceeecCCCcEEEEee-CCC------CCCeEEEEeCCCCC---C-----C----------CCcc-------cCcEEEEc
Q psy17058 98 PRQQSAPEGSQVTIECK-SND------PSATIKWSKDNQEQ---L-----P----------PNMI-------AGETLIIN 145 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~-~~~------p~~~v~W~~~~~~~---~-----~----------~~~~-------~~~~L~i~ 145 (471)
|..+.+.+|++|+|.|. ... ....+.||+..... . . ++.. ...+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 66788999999999998 211 13569999984221 0 0 1100 23579999
Q ss_pred CCCCCCCeEEEEEEEec
Q psy17058 146 GITKADEGVYICSIQNA 162 (471)
Q Consensus 146 ~v~~~D~G~Y~C~~~~~ 162 (471)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988653
No 301
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.02 E-value=5.2e-05 Score=61.87 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=61.1
Q ss_pred EEecCCCcEEEEEEEe-ecCCCeEEEEeCCccCC----------C----ccc-ccccCceeEEEEeecCCCCCeEEEEEE
Q psy17058 284 VSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD----------R----NLE-RDELTSRAVYTIASVRESDAGQYKCIG 347 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~~----------~----~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a 347 (471)
+.+.+|++++|.|... +...+.++|.|..+.+. . +.. +........|+|.+++.+|+|.|+|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4788999999999984 55567899999744322 1 011 122235678999999999999999988
Q ss_pred Ec-CCC-ceEEEEEEEEecCC
Q psy17058 348 KN-SAG-TEEKVITVAVEHRP 366 (471)
Q Consensus 348 ~n-~~g-~~~~~~~l~V~~~p 366 (471)
.- +.| ..+....|.|....
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EecCCCCCceeEEEEEEEchh
Confidence 74 456 77888889988754
No 302
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.01 E-value=3.5e-05 Score=60.02 Aligned_cols=67 Identities=16% Similarity=0.391 Sum_probs=48.2
Q ss_pred cEEecCCCcEEEEEEEee--cCCCeEEEEeCC--ccCC-------------------CcccccccC--ceeEEEEeecCC
Q psy17058 283 YVSVRPGEPLTLECEATG--RPMPTVSWVKYI--APFD-------------------RNLERDELT--SRAVYTIASVRE 337 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~g--~p~~~i~W~~~~--~~~~-------------------~~~~~~~~~--~~~~l~i~~~~~ 337 (471)
.+.+.+|++++|.|.+.+ .+...+.|++.. .... ......... ....|+|.+++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 467889999999999987 566789999852 2110 000111112 467899999999
Q ss_pred CCCeEEEEEEEc
Q psy17058 338 SDAGQYKCIGKN 349 (471)
Q Consensus 338 ~d~G~Y~C~a~n 349 (471)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999865
No 303
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.00 E-value=6.9e-05 Score=58.28 Aligned_cols=72 Identities=22% Similarity=0.394 Sum_probs=46.8
Q ss_pred CceeEEcCCeEEEEEEccCCCC---CCeEEEEeCCCC-C--------------C-cC----CCceEEe----eeceEEEe
Q psy17058 189 ASQTFIVGDRADIQCVLEAGEP---SPTQTWIRPDND-G--------------K-FG----PDVEVYQ----ELGVLRFN 241 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~~p---~~~v~W~~~~~~-~--------------~-~~----~~~~~~~----~~~~l~i~ 241 (471)
....+.+|+.++|.|......+ ...+.|++.... . . .. .+..+.. ....|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 3456789999999998843322 246999864321 0 0 01 1111111 13579999
Q ss_pred ccCCCCCeEEEEEEEcCCC
Q psy17058 242 NIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 242 ~~~~~d~G~Y~C~~~~~~~ 260 (471)
+++.+|+|.|.|.+.+...
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997644
No 304
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=2.5e-05 Score=58.71 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=46.1
Q ss_pred EecCCCcEEEEEEEeec--CCCeEEEEeCCcc--CC--------------CcccccccCceeEEEEeecCCCCCeEEEEE
Q psy17058 285 SVRPGEPLTLECEATGR--PMPTVSWVKYIAP--FD--------------RNLERDELTSRAVYTIASVRESDAGQYKCI 346 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~--p~~~i~W~~~~~~--~~--------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 346 (471)
.+.+|++++|.|...+. ....+.|++.... .. .............|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 4457999985321 11 011111122456799999999999999999
Q ss_pred EEcC
Q psy17058 347 GKNS 350 (471)
Q Consensus 347 a~n~ 350 (471)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 305
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.00 E-value=5.3e-05 Score=57.70 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=53.7
Q ss_pred CCCcEEEEEEEeecC-------CCeEEEEeCC--ccCC----------------C---cccc---cccCceeEEEEeecC
Q psy17058 288 PGEPLTLECEATGRP-------MPTVSWVKYI--APFD----------------R---NLER---DELTSRAVYTIASVR 336 (471)
Q Consensus 288 ~g~~v~l~C~~~g~p-------~~~i~W~~~~--~~~~----------------~---~~~~---~~~~~~~~l~i~~~~ 336 (471)
.|++++|.|...-.| .+.+.|.+.. .... . .... .......+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999965322 3589998752 1110 0 0000 011356799999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 337 ESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 337 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999877778888888864
No 306
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.99 E-value=6.9e-05 Score=55.44 Aligned_cols=57 Identities=23% Similarity=0.496 Sum_probs=38.7
Q ss_pred CcEEEEee--CCCCCCeEEEEeCCCCC--------------C----CCCcc------cCcEEEEcCCCCCCCeEEEEEEE
Q psy17058 107 SQVTIECK--SNDPSATIKWSKDNQEQ--------------L----PPNMI------AGETLIINGITKADEGVYICSIQ 160 (471)
Q Consensus 107 ~~v~l~C~--~~~p~~~v~W~~~~~~~--------------~----~~~~~------~~~~L~i~~v~~~D~G~Y~C~~~ 160 (471)
+.++|.|. ......+|+|.|..+.. + .++.. .+.+|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46788898 33345678898863210 0 01111 35799999999999999999997
Q ss_pred ecC
Q psy17058 161 NAQ 163 (471)
Q Consensus 161 ~~~ 163 (471)
...
T Consensus 81 t~P 83 (96)
T cd05889 81 TYP 83 (96)
T ss_pred eCC
Confidence 653
No 307
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.97 E-value=3.6e-05 Score=57.87 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=45.2
Q ss_pred eeecCCCcEEEEee-CC-CCCCeEEEEeCCCCCC--------------CCCcc-------cCcEEEEcCCCCCCCeEEEE
Q psy17058 101 QSAPEGSQVTIECK-SN-DPSATIKWSKDNQEQL--------------PPNMI-------AGETLIINGITKADEGVYIC 157 (471)
Q Consensus 101 ~~v~~G~~v~l~C~-~~-~p~~~v~W~~~~~~~~--------------~~~~~-------~~~~L~i~~v~~~D~G~Y~C 157 (471)
+.+.+|++|+|.|. .. .....+.|+|...... ..+.. ....|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46889999999998 33 3566799999832210 01111 23479999999999999999
Q ss_pred EEEecC
Q psy17058 158 SIQNAQ 163 (471)
Q Consensus 158 ~~~~~~ 163 (471)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987643
No 308
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.93 E-value=0.03 Score=64.11 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=159.4
Q ss_pred eecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEE--EecCCceeeeeEEEEEeec
Q psy17058 102 SAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSI--QNAQGNVFQDYASIQVDKR 178 (471)
Q Consensus 102 ~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~--~~~~~~~~~~~~~l~v~~~ 178 (471)
.+..|..+.|.-. ...-...+.|..+++..... .. . ..+..+.|.|+-.. .|..+. ...+..+.|+
T Consensus 1796 ~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g----k~-v---~~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQ-- 1864 (2740)
T TIGR00864 1796 FFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG----KH-A---CMTFPDAGTFAIRLNASNAVSG-KSASREFFAE-- 1864 (2740)
T ss_pred ceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc----ce-e---EEecCCCeEEEEEEEEEcccCc-ceeeeeEEEE--
Confidence 3556777777666 33334578887774432211 11 1 15678999998875 566655 5555555555
Q ss_pred cCC-eeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEE--EE
Q psy17058 179 EMP-RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC--IA 255 (471)
Q Consensus 179 ~~p-~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~ 255 (471)
++. .+.+.. ....+..|+.++|.+.+ .......+.|...+...... ..+.+ ..+ .....|.|.. .+
T Consensus 1865 e~I~~L~L~a-s~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGdgs~~~~------t~~~t-~~H--sY~~~G~Y~VtV~A 1933 (2740)
T TIGR00864 1865 EPIFGLELKA-SKKIAAIGEKVEFQILL-AAGSAVNFRLQIGGAAPEVL------QPGPR-FSH--SFPRVDDHMVNLRA 1933 (2740)
T ss_pred EecceEEEec-ccccccCCCEEEEEEEe-cCCCceEEEEEeCCCCceee------cCCCe-EEe--ecCCCCcEEEEEEE
Confidence 333 233332 23356789999999988 44457899998876542211 00111 111 1223466655 45
Q ss_pred EcCCCceEEEEEEEEEeCC-ceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEee
Q psy17058 256 ENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIAS 334 (471)
Q Consensus 256 ~~~~~~~~~~~~l~V~~~p-~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~ 334 (471)
.|..+.....+.+.|..+- -+.+.......+..|+..+|.-.+....+..+.|+..-..+............-++..
T Consensus 1934 ~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~-- 2011 (2740)
T TIGR00864 1934 KNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA-- 2011 (2740)
T ss_pred EeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc--
Confidence 6777777767777776542 2222221111256799999998886555567999865332221111001111122222
Q ss_pred cCCCCCeEEEE--EEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecC
Q psy17058 335 VRESDAGQYKC--IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP 412 (471)
Q Consensus 335 ~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~ 412 (471)
...|.|+. .|.|..|.......|.|+.+.
T Consensus 2012 ---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i---------------------------------------------- 2042 (2740)
T TIGR00864 2012 ---EAAGLLEIQLGAFNALGAENITLQLEAQDAL---------------------------------------------- 2042 (2740)
T ss_pred ---CCCcEEEEEEEEEcccCcccccEEEEEEehe----------------------------------------------
Confidence 36787775 566888988877888887652
Q ss_pred CeeEEcCCeeeeeCCCeEEEEEEecccCC-ceEEEecC-CCCC
Q psy17058 413 PRITLRPVRQTVKPGDIANIRCSAIGATP-ISIRWQPL-QGYF 453 (471)
Q Consensus 413 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~-g~~l 453 (471)
-...+.........+..+.|.|.+...+. ..+.|-++ |...
T Consensus 2043 ~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~ 2085 (2740)
T TIGR00864 2043 MDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAG 2085 (2740)
T ss_pred eeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCc
Confidence 11222222345566899999999976553 58899776 5553
No 309
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.91 E-value=0.00015 Score=55.34 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=35.6
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
...+|.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 568999999999999999999999998889999998864
No 310
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.91 E-value=5.5e-05 Score=55.91 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCCcEEEEEEEee-cCC-CeEEEEeCCccCCCcc--------cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058 288 PGEPLTLECEATG-RPM-PTVSWVKYIAPFDRNL--------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 288 ~g~~v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 356 (471)
.++.+.|.|.+.| +|. ..++|+++|..+.... ........+.|.+......+...|+|.|.+.....+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 4566999999999 565 4899999998863221 1111222344555554455667999999997765443
No 311
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.91 E-value=3.9e-05 Score=59.42 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=54.2
Q ss_pred ccEEecCCCcEEEEEEEe-ecCCCeEEEEeCCccC-----C----C--------c------ccccccCceeEEEEeecCC
Q psy17058 282 EYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPF-----D----R--------N------LERDELTSRAVYTIASVRE 337 (471)
Q Consensus 282 ~~~~~~~g~~v~l~C~~~-g~p~~~i~W~~~~~~~-----~----~--------~------~~~~~~~~~~~l~i~~~~~ 337 (471)
..+.+.+|+++.|.|... ......+.|++..... . . . ..........+|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 346788999999999998 3444589999854310 0 0 0 0001123456899999999
Q ss_pred CCCeEEEEEEEcC-CCceEEEEEEEE
Q psy17058 338 SDAGQYKCIGKNS-AGTEEKVITVAV 362 (471)
Q Consensus 338 ~d~G~Y~C~a~n~-~g~~~~~~~l~V 362 (471)
+|+|.|.|.+... .......+.|.|
T Consensus 89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 89 SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999987 223344455544
No 312
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.91 E-value=0.00013 Score=55.74 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=29.4
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~ 176 (471)
.+.+|.|.+++.+|+|.|.|.+.+.... ......|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 3579999999999999999999887655 4444555543
No 313
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.90 E-value=6.6e-05 Score=54.13 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=43.6
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCCCc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
++|.|.+.+++|.+.++|+|++..+...... ..+...+.|.+......+...|+|++.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 6899999778899999999999874322111 1122234577766666778899999988653
No 314
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.89 E-value=0.0001 Score=56.15 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCeEEEEEEccCC------CCCCeEEEEeCC--CCC-----------------CcCCCceEEe-----eeceEEEeccCC
Q psy17058 196 GDRADIQCVLEAG------EPSPTQTWIRPD--NDG-----------------KFGPDVEVYQ-----ELGVLRFNNIAT 245 (471)
Q Consensus 196 g~~~~L~C~~~~~------~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~-----~~~~l~i~~~~~ 245 (471)
|++++|.|..... ...+.+.|.|.. ... ....+..+.. ...+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7889999986311 123689998752 110 0112233322 245799999999
Q ss_pred CCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 246 GDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 246 ~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
+|+|.|.|.+..........+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876667777777775
No 315
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.88 E-value=5.9e-05 Score=57.81 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=52.2
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc----c-----cccCceeEEEEeecCCCC-Ce
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE----R-----DELTSRAVYTIASVRESD-AG 341 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~----~-----~~~~~~~~l~i~~~~~~d-~G 341 (471)
|.+.+.++.......++.++|.|.+.| +|.. .+.|++++..+..... . ......+.|.|......+ ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 444444333233445778999999999 5653 8999999987653211 0 112233455565555444 45
Q ss_pred EEEEEEEcCCCceEEE
Q psy17058 342 QYKCIGKNSAGTEEKV 357 (471)
Q Consensus 342 ~Y~C~a~n~~g~~~~~ 357 (471)
.|+|.+.+........
T Consensus 83 ~ytC~V~H~g~~~~~~ 98 (115)
T cd05769 83 TFTCIVQFYGGTDTDK 98 (115)
T ss_pred eEEEEEEEeCCcccee
Confidence 9999999987666544
No 316
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.88 E-value=4.5e-05 Score=57.39 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=44.5
Q ss_pred ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc----c-c------cccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL----E-R------DELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~----~-~------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
+..|..++|.|.+.| +|.. .+.|+++|+.+.... . . ......+.|.+..-...+...|+|.|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 345788999999999 5543 789999998764321 0 0 1122234455544444566689999998754
Q ss_pred ce
Q psy17058 353 TE 354 (471)
Q Consensus 353 ~~ 354 (471)
..
T Consensus 93 ~~ 94 (102)
T cd05768 93 PL 94 (102)
T ss_pred Cc
Confidence 43
No 317
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.88 E-value=0.00013 Score=54.86 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=47.6
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC-------------CcCCCceEEe----eeceEEEeccCCCCCeEEEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG-------------KFGPDVEVYQ----ELGVLRFNNIATGDEGKYTCI 254 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~-------------~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 254 (471)
.+.+|++++|.|..........+.|+|..... ....++.+.. ....|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 56799999999998433456689999865321 1122333321 124699999999999999999
Q ss_pred EEcCC
Q psy17058 255 AENSA 259 (471)
Q Consensus 255 ~~~~~ 259 (471)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 97653
No 318
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.86 E-value=7.5e-05 Score=58.01 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=45.7
Q ss_pred cCCceeecCCCcEEEEee-CCC--CCCeEEEEeCCCCCC--------------------CCCcc----c---CcEEEEcC
Q psy17058 97 TPRQQSAPEGSQVTIECK-SND--PSATIKWSKDNQEQL--------------------PPNMI----A---GETLIING 146 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~-~~~--p~~~v~W~~~~~~~~--------------------~~~~~----~---~~~L~i~~ 146 (471)
+|....+.+|++|+|.|. ... ....+.|||...... .++.. . ...|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 466788999999999998 322 245699999732111 01111 1 12699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy17058 147 ITKADEGVYICSIQN 161 (471)
Q Consensus 147 v~~~D~G~Y~C~~~~ 161 (471)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 319
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.84 E-value=0.11 Score=59.81 Aligned_cols=277 Identities=11% Similarity=0.152 Sum_probs=164.7
Q ss_pred EEcCCceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEE--EecCCceeeeeE
Q psy17058 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSI--QNAQGNVFQDYA 171 (471)
Q Consensus 95 ~~~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~--~~~~~~~~~~~~ 171 (471)
.+......+..|+.|.|.-. .......++|..+++...... ...+ .-+....|.|...+ .|..+. ...+.
T Consensus 1701 ~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s---~p~~---tHtf~~~G~y~VtVta~N~vss-~~~s~ 1773 (2740)
T TIGR00864 1701 MLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS---EPFM---SHSFPSAGLHLVTMKAFNELGS-ANASE 1773 (2740)
T ss_pred EEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC---CCce---EEEccCCceEEEEEEEEccccc-cceeE
Confidence 33334445677999999887 666778999998855432111 1101 11245678887765 566665 44344
Q ss_pred EEEEeeccCCe-eeecCCC---ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCC
Q psy17058 172 SIQVDKREMPR-IRIHPNA---SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247 (471)
Q Consensus 172 ~l~v~~~~~p~-~~~~~~~---~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 247 (471)
.|.|. ++.. +.+.... ...+..|..+.+.-.+..|. ...+.|..++..-..... . ..+..+
T Consensus 1774 ~V~Vq--epV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~---------v---~~Tf~~ 1838 (2740)
T TIGR00864 1774 EVDVQ--EPISGLKIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKH---------A---CMTFPD 1838 (2740)
T ss_pred EEEEE--eccccceEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccce---------e---EEecCC
Confidence 44443 3221 1221111 11345678888877763333 358888887554121111 0 134567
Q ss_pred CeEEEEE--EEcCCCceEEEEEEEEEeCCc-eeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCccCCCccccccc
Q psy17058 248 EGKYTCI--AENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL 324 (471)
Q Consensus 248 ~G~Y~C~--~~~~~~~~~~~~~l~V~~~p~-~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~ 324 (471)
.|.|+-. |.|..+....+..+.|+.+.. +.+.. ....+..|+.++|.+.+...+..++.|...+..-...
T Consensus 1839 aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~------ 1911 (2740)
T TIGR00864 1839 AGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL------ 1911 (2740)
T ss_pred CeEEEEEEEEEcccCcceeeeeEEEEEecceEEEec-ccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee------
Confidence 8999775 568888778888888887663 33332 2336778999999999887777789998765331110
Q ss_pred CceeEEEEeecCCCCCeEE--EEEEEcCCCceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCCCceEEEcCC
Q psy17058 325 TSRAVYTIASVRESDAGQY--KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402 (471)
Q Consensus 325 ~~~~~l~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 402 (471)
....+ +.. +....|.| +-.|.|..+.....+.+.|..+-
T Consensus 1912 t~~~t--~~H-sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V------------------------------------ 1952 (2740)
T TIGR00864 1912 QPGPR--FSH-SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV------------------------------------ 1952 (2740)
T ss_pred cCCCe--EEe-ecCCCCcEEEEEEEEeccceeeeeEEEEEEEec------------------------------------
Confidence 01111 111 12233444 56778999998888888876541
Q ss_pred cceEEeeecCCeeEEcCCee-eeeCCCeEEEEEEecccCCceEEEecC
Q psy17058 403 NASISCSVEPPRITLRPVRQ-TVKPGDIANIRCSAIGATPISIRWQPL 449 (471)
Q Consensus 403 ~~~y~c~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~v~W~~~ 449 (471)
.-+.+...-. .+..|+...|.-.+...-+..+.|+++
T Consensus 1953 ----------~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864 1953 ----------RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred ----------cceEecCCcccceecCceEEEEEEEecCCceEEEEEee
Confidence 2232222211 267899999999998555678999866
No 320
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.81 E-value=0.002 Score=60.11 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=61.1
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCC---ceEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEe
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAG---KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK 310 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~ 310 (471)
.|.|.+++..++|.|+-++.+... .....++|.+...|.+.+.+. .+.+|+...-.|.+..+-++ .+.|++
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 499999999999999988754322 245667788888888777653 57889999999999874433 699999
Q ss_pred CCccCCC
Q psy17058 311 YIAPFDR 317 (471)
Q Consensus 311 ~~~~~~~ 317 (471)
|+..+..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9888764
No 321
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.81 E-value=0.00026 Score=52.40 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=45.5
Q ss_pred CeEEEEEEccCCCCCCeEEEEeCCCC----C-------------CcCCCceEEe---eeceEEEeccCCCCCeEEEEEEE
Q psy17058 197 DRADIQCVLEAGEPSPTQTWIRPDND----G-------------KFGPDVEVYQ---ELGVLRFNNIATGDEGKYTCIAE 256 (471)
Q Consensus 197 ~~~~L~C~~~~~~p~~~v~W~~~~~~----~-------------~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~ 256 (471)
+.++|.|..........++|.|.... + +...+..+.. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46889998843334457899886431 0 0112222221 24689999999999999999996
Q ss_pred c-CCCceEEEEE
Q psy17058 257 N-SAGKEVMNAY 267 (471)
Q Consensus 257 ~-~~~~~~~~~~ 267 (471)
. +.|..+..+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 5 4555554443
No 322
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.80 E-value=0.00014 Score=51.35 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=40.9
Q ss_pred EEEEEEEee-cCC-CeEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 292 LTLECEATG-RPM-PTVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 292 v~l~C~~~g-~p~-~~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
++|.|.+.| +|. .++.|+++|+.+..... .......+.|.|.....++...|+|.|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 689999999 465 48999999986432211 11122334566655566777899999988643
No 323
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.79 E-value=0.00017 Score=55.07 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=43.1
Q ss_pred eEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-ce------EEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 192 TFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-VE------VYQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
....|+.++|.|.+.+.+|. ..++|+|||..+..... .. .+...+.|.+..-..+....|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence 34578889999999776775 69999999987532111 10 111233455554333333469999998653
No 324
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.79 E-value=0.00013 Score=50.52 Aligned_cols=61 Identities=38% Similarity=0.743 Sum_probs=46.9
Q ss_pred EEEEEEEeecCCCeEEEEeCCccCCCcc------cccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 292 LTLECEATGRPMPTVSWVKYIAPFDRNL------ERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 292 v~l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
+.|.|.+.+.+...+.|++++....... ..........|.|.++...|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 4689999886777999999876654322 223345667899999999999999999998763
No 325
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.79 E-value=0.0025 Score=58.75 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=61.8
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeC
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKY 311 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~ 311 (471)
.|.|..++...+|.|+-..-+..+. ....++|..+.+|.+.+.+. .+.+|+...-.|.+..+-++ .+.|++|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4899999999999999997765553 34557777778888887754 57789999999999874443 6999999
Q ss_pred CccCC
Q psy17058 312 IAPFD 316 (471)
Q Consensus 312 ~~~~~ 316 (471)
+..+.
T Consensus 260 g~~V~ 264 (466)
T PHA03270 260 GDEVF 264 (466)
T ss_pred Ccccc
Confidence 99875
No 326
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.77 E-value=0.00044 Score=51.20 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=43.0
Q ss_pred ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--cc------ccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--RD------ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
+..|+.++|.|.+.| +|.. +++|+++|+.+..... .. .....+.|.+ ..++...|+|.+.+.....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCCC
Confidence 346889999999999 5554 7999999988654311 00 1111223333 3445669999999976543
No 327
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.75 E-value=0.0026 Score=59.23 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=75.6
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEeC
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKY 311 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~~ 311 (471)
.|.|..++...+|.|+-+..+..+. ....+.+....+|.+.+.+. .+.+|+...-.|.+..+-++ .+.|++|
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4999999999999999887555443 34455555577888877753 57889999999999874433 6999999
Q ss_pred CccCC-Ccc-cccc-------cCceeEEEEeecC-CCCCeEEEEEEEcCCCc
Q psy17058 312 IAPFD-RNL-ERDE-------LTSRAVYTIASVR-ESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 312 ~~~~~-~~~-~~~~-------~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~ 353 (471)
+.++. ... .... ....++|++.... .+..=..+|.+......
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 99887 221 1111 1222344444432 22333789998754443
No 328
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.72 E-value=0.00053 Score=50.59 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=40.9
Q ss_pred cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
..++..+|.|.+.| +|.. .++|.++|..+..... .......+.|.+. .++...|+|.+.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence 34667899999999 6644 7999999988754211 0111222344443 3455699999998654
No 329
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.71 E-value=6e-05 Score=56.59 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=49.2
Q ss_pred CeeeecCCCceeEEcCCeEEEEEEccCCCC-CCeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEE
Q psy17058 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEP-SPTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKY 251 (471)
Q Consensus 181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p-~~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y 251 (471)
|.+.+.++.......++.++|.|.+.+.+| ...++|+++|..+.... ... .+...+.|.+..-...+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 444444444434446788999999966677 57999999998753211 000 111123455555554567899
Q ss_pred EEEEEcCCC
Q psy17058 252 TCIAENSAG 260 (471)
Q Consensus 252 ~C~~~~~~~ 260 (471)
+|++.+...
T Consensus 82 sC~V~H~~l 90 (100)
T cd07699 82 TCEVTHEGL 90 (100)
T ss_pred EEEEEecCC
Confidence 999988653
No 330
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.71 E-value=0.00051 Score=50.90 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCcEEEEEEEee-cCCC-eEEEEeCCccCCCcc--cccccCceeEE---EEeecCCCCCeEEEEEEEcCCCc
Q psy17058 289 GEPLTLECEATG-RPMP-TVSWVKYIAPFDRNL--ERDELTSRAVY---TIASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 289 g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~--~~~~~~~~~~l---~i~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
++.+.|.|.+.| +|.. .++|+++++.+.... .......++++ ..-.+...+...|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 778999999999 4554 899999986332111 00011111111 12233445788999999987543
No 331
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.71 E-value=7.8e-05 Score=56.61 Aligned_cols=59 Identities=24% Similarity=0.501 Sum_probs=42.2
Q ss_pred eecCCCcEEEEee-CCCCCCeEEEEeCCCC--CCC---------CC------------cc-----cCcEEEEcCCCCCCC
Q psy17058 102 SAPEGSQVTIECK-SNDPSATIKWSKDNQE--QLP---------PN------------MI-----AGETLIINGITKADE 152 (471)
Q Consensus 102 ~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~--~~~---------~~------------~~-----~~~~L~i~~v~~~D~ 152 (471)
.+.+|++|+|.|. .......+.||+.... ..+ .. .. ....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 4789999999998 4444567999998432 110 00 00 224799999999999
Q ss_pred eEEEEEEE
Q psy17058 153 GVYICSIQ 160 (471)
Q Consensus 153 G~Y~C~~~ 160 (471)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 332
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.71 E-value=0.00039 Score=51.16 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=50.4
Q ss_pred ecCCCceeEEcCCeEEE-EEEccCCCCCCeEEEEeCCCCCCcCCCce-----EEeeeceEEEeccCCCCCeEEEEEEEcC
Q psy17058 185 IHPNASQTFIVGDRADI-QCVLEAGEPSPTQTWIRPDNDGKFGPDVE-----VYQELGVLRFNNIATGDEGKYTCIAENS 258 (471)
Q Consensus 185 ~~~~~~~~v~~g~~~~L-~C~~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 258 (471)
+.+.....+.+|+.+.+ .|.+..+.|.+.|+|+.+..... ..... ...-.+.+.+......|...++|++.+.
T Consensus 5 ~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 5 LSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred cCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 34444556778999999 99998999999999998744321 10000 1111335666666667788999999887
Q ss_pred CC
Q psy17058 259 AG 260 (471)
Q Consensus 259 ~~ 260 (471)
.-
T Consensus 84 al 85 (97)
T cd07704 84 AL 85 (97)
T ss_pred cc
Confidence 54
No 333
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.70 E-value=7.1e-05 Score=55.89 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=46.3
Q ss_pred EcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-c-eE------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 194 IVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-V-EV------YQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 194 ~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~-~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
..|+.++|.|.+.+..|. +.++|++++..+..... . .. +...+.|.+......+.+.|+|++.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 368899999999544464 79999999876543321 1 11 111334666666667999999999987653
No 334
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.70 E-value=0.039 Score=50.48 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=54.8
Q ss_pred cEEecCCCcEEEEEEEe--ecCCC-eEEEEeCCccCC------------------Ccc-------cccccCceeEEEEee
Q psy17058 283 YVSVRPGEPLTLECEAT--GRPMP-TVSWVKYIAPFD------------------RNL-------ERDELTSRAVYTIAS 334 (471)
Q Consensus 283 ~~~~~~g~~v~l~C~~~--g~p~~-~i~W~~~~~~~~------------------~~~-------~~~~~~~~~~l~i~~ 334 (471)
...+..|..+.|.|..+ |+... ...|..-+-++. ... .-......++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34677799999999976 34433 689986543322 000 001223568999999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy17058 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEH 364 (471)
Q Consensus 335 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 364 (471)
++.+..|=|+|+|....-..+...-|.|.+
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d 382 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVAD 382 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEecc
Confidence 999999999999988755555555555543
No 335
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.68 E-value=0.00025 Score=52.12 Aligned_cols=66 Identities=24% Similarity=0.474 Sum_probs=45.9
Q ss_pred CCcEEEEEEEe-ecCCCeEEEEeCCccCCCc-------ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 289 GEPLTLECEAT-GRPMPTVSWVKYIAPFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 289 g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
|+.+.|+|.+. ++|++.|.|+.++..+... .........+.|.+.....++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999875 4999999999998877211 011112234567777666667789999999986544
No 336
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.67 E-value=0.00036 Score=51.33 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=49.6
Q ss_pred eCCCccEEecCCCcEEE-EEEEe-ecCCCeEEEEeCCccCCCccc----ccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 278 ITPSEYVSVRPGEPLTL-ECEAT-GRPMPTVSWVKYIAPFDRNLE----RDELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 278 ~~~~~~~~~~~g~~v~l-~C~~~-g~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
+.+.....+.+|+.+.+ .|.+. |.|.++|.|+.+......... .....-.+.|.+.....+|.-.++|.+.+..
T Consensus 5 ~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 5 LSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred cCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34444557788999999 89975 589999999987444321111 1112233456666666667779999999985
Q ss_pred C
Q psy17058 352 G 352 (471)
Q Consensus 352 g 352 (471)
-
T Consensus 85 l 85 (97)
T cd07704 85 L 85 (97)
T ss_pred c
Confidence 4
No 337
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.65 E-value=0.011 Score=54.19 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=71.2
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEE-eCCceeeCCCccEEecCCCcEEEEEEEeecCCC---eEEEEe
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVL-TLPAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK 310 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~-~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~i~W~~ 310 (471)
.+.|.++...++|.|.-...+.... ....+.+.+. .+|.+.+.+. .+..|+...-.|.+..+-++ .+.|++
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 5899999999999775555543333 2334444444 4555766653 57789999999999874444 699999
Q ss_pred CCccCCCcccccc-c---------CceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 311 YIAPFDRNLERDE-L---------TSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 311 ~~~~~~~~~~~~~-~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
+|........... . ...++|++.+...+..=..+|.+....+..
T Consensus 285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v 338 (490)
T PHA03271 285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDM 338 (490)
T ss_pred CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCc
Confidence 9988753321111 0 112333333332233338999998665533
No 338
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.63 E-value=0.00027 Score=55.01 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=48.4
Q ss_pred CceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCC--------------CcCCCceEEe----eeceEEEeccCCCCCeE
Q psy17058 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--------------KFGPDVEVYQ----ELGVLRFNNIATGDEGK 250 (471)
Q Consensus 189 ~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~----~~~~l~i~~~~~~d~G~ 250 (471)
....+.+|++++|.|..........+.|+|..... ....++.+.. ....|.|.+++.+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 35567899999999988433345689999853211 1123343321 23469999999999999
Q ss_pred EEEEEEcC
Q psy17058 251 YTCIAENS 258 (471)
Q Consensus 251 Y~C~~~~~ 258 (471)
|.|.+...
T Consensus 87 Y~C~~~~~ 94 (116)
T cd07706 87 YFCALSTL 94 (116)
T ss_pred EEEEEECC
Confidence 99999753
No 339
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.63 E-value=0.00028 Score=52.18 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.0
Q ss_pred ecCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc-------ccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 286 VRPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD-------ELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 286 ~~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
...+..++|.|.+.| +|.. .++|.++|..+....... .....+.|.+..-. ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 334677999999999 5644 799999998865331100 11122333333321 2336999999854
No 340
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.63 E-value=0.00019 Score=54.80 Aligned_cols=65 Identities=23% Similarity=0.440 Sum_probs=44.3
Q ss_pred EecCCCcEEEEEEEeecC-CCeEEEEeCCcc---C--C-----C------------cccc----cccCceeEEEEeecCC
Q psy17058 285 SVRPGEPLTLECEATGRP-MPTVSWVKYIAP---F--D-----R------------NLER----DELTSRAVYTIASVRE 337 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~p-~~~i~W~~~~~~---~--~-----~------------~~~~----~~~~~~~~l~i~~~~~ 337 (471)
.+.+|++++|.|.+.+.. ...+.|++.... . . . ..+. ........|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 478899999999987643 347999985432 0 0 0 0000 0112245799999999
Q ss_pred CCCeEEEEEEEc
Q psy17058 338 SDAGQYKCIGKN 349 (471)
Q Consensus 338 ~d~G~Y~C~a~n 349 (471)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 341
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.00021 Score=52.90 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=47.8
Q ss_pred CceeeCCCccEEecCCCcEEEEEEEee-c-CC-CeEEEEeCCccCCCccc------ccccCceeEEEEeecCCCCCeEEE
Q psy17058 274 PAVTITPSEYVSVRPGEPLTLECEATG-R-PM-PTVSWVKYIAPFDRNLE------RDELTSRAVYTIASVRESDAGQYK 344 (471)
Q Consensus 274 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~-p~-~~i~W~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~ 344 (471)
|.+.+.++.......+..++|.|.+.+ + |. ..+.|.++++. ..... .......+.|.+..-.+.....|+
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 444444333334446889999999999 4 43 37999999875 21111 111223345555544455556899
Q ss_pred EEEEcCCC
Q psy17058 345 CIGKNSAG 352 (471)
Q Consensus 345 C~a~n~~g 352 (471)
|.|.+...
T Consensus 83 C~V~H~~l 90 (99)
T cd04986 83 CTVTHPEG 90 (99)
T ss_pred EEEECCCc
Confidence 99998755
No 342
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.60 E-value=0.00024 Score=52.75 Aligned_cols=70 Identities=11% Similarity=0.232 Sum_probs=43.2
Q ss_pred EecCCCcEEEEEEEeec--CCC-eEEEEeCCccC-CCccc------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 285 SVRPGEPLTLECEATGR--PMP-TVSWVKYIAPF-DRNLE------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~--p~~-~i~W~~~~~~~-~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
.+..|+.++|.|.+.|+ |.. .++|+|+++.. ..... .......+.|.+..-.+.+.-.|+|.|.+.....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 45668999999999998 443 79999986432 21111 1112223344444444444558999999976543
No 343
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.60 E-value=0.0012 Score=48.50 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=41.8
Q ss_pred cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccccc--ccCceeEEEE---eecCCCCCeEEEEEEEcCCCc
Q psy17058 287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLERD--ELTSRAVYTI---ASVRESDAGQYKCIGKNSAGT 353 (471)
Q Consensus 287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~~~--~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~g~ 353 (471)
..|...+|.|.+.| +|.. .++|+++|..+. ..... ......++.+ -.+..++...|+|.+.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~ 85 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS 85 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence 45677799999999 5543 799999999876 32111 1112222222 233456677999999986443
No 344
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.55 E-value=0.00023 Score=54.03 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=44.5
Q ss_pred EecCCCcEEEEEEEeecCCCeEEEEeCCcc----CC------C--cc------------cccccCceeEEEEeecCCCCC
Q psy17058 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAP----FD------R--NL------------ERDELTSRAVYTIASVRESDA 340 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~p~~~i~W~~~~~~----~~------~--~~------------~~~~~~~~~~l~i~~~~~~d~ 340 (471)
.+.+|++++|.|.+.......+.|++.... .. . .. ..........|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999986554457999986432 10 0 00 000113456799999999999
Q ss_pred eEEEEEEEc
Q psy17058 341 GQYKCIGKN 349 (471)
Q Consensus 341 G~Y~C~a~n 349 (471)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 345
>KOG1480|consensus
Probab=97.50 E-value=3.5e-05 Score=75.32 Aligned_cols=179 Identities=16% Similarity=0.255 Sum_probs=108.3
Q ss_pred CCCcEEEcCCceeecCCCcEEEEee-CCCCC----CeEEEEeCCCCCCCCCcc-------cCcEEEEcCCCCCCCe---E
Q psy17058 90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPS----ATIKWSKDNQEQLPPNMI-------AGETLIINGITKADEG---V 154 (471)
Q Consensus 90 ~~~~v~~~p~~~~v~~G~~v~l~C~-~~~p~----~~v~W~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G---~ 154 (471)
.-+.|...|.+..+..|..+.|.|. ...+. ..-.|..+.......... ......|...+.++.| .
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED 102 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence 4577888999999999999999998 33322 233465552221111111 1123344444444432 4
Q ss_pred EEEE--EEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEE
Q psy17058 155 YICS--IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY 232 (471)
Q Consensus 155 Y~C~--~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 232 (471)
|.|+ +....|...+..+.+.+.. .-......+..+.|..+..++|.|....+.|...+.|++++..+....+...
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~ay--~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~- 179 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIAY--LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR- 179 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHHH--HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh-
Confidence 7665 4444443222222222221 1112222233456788899999999988899999999999887655333333
Q ss_pred eeeceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEE
Q psy17058 233 QELGVLRFNNIATGDEGKYTCIAENSAGKE-VMNAYIHVL 271 (471)
Q Consensus 233 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~ 271 (471)
.....+++..+...|.|+|+|++.|-.+.. ...+.+.+.
T Consensus 180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 180 ASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 236679999999999999999999876653 334444444
No 346
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.50 E-value=0.00073 Score=52.73 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=46.7
Q ss_pred CCceeEEcCCeEEEEEEccCCC-----CCCeEEEEeCCCCC-----C------------cCCCceEE----eeeceEEEe
Q psy17058 188 NASQTFIVGDRADIQCVLEAGE-----PSPTQTWIRPDNDG-----K------------FGPDVEVY----QELGVLRFN 241 (471)
Q Consensus 188 ~~~~~v~~g~~~~L~C~~~~~~-----p~~~v~W~~~~~~~-----~------------~~~~~~~~----~~~~~l~i~ 241 (471)
+....+.+|+.++|.|...... ....+.||+..... . ...++.+. .....|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3445788999999999763221 13468999864321 0 01122221 123469999
Q ss_pred ccCCCCCeEEEEEEEcC
Q psy17058 242 NIATGDEGKYTCIAENS 258 (471)
Q Consensus 242 ~~~~~d~G~Y~C~~~~~ 258 (471)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998664
No 347
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.49 E-value=0.00094 Score=49.46 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=41.4
Q ss_pred CCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 288 PGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 288 ~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
.++.++|.|.+.| +|.. +++|+++|.. ..... .......+.|.+..........|+|.+.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~ 88 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST 88 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence 4667999999999 5544 7999999987 32210 11122334455555444345689999999753
No 348
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.49 E-value=0.0004 Score=53.23 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=50.5
Q ss_pred CeeeecCCCceeEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC---c------eEEeeeceEEEeccCCCC-Ce
Q psy17058 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD---V------EVYQELGVLRFNNIATGD-EG 249 (471)
Q Consensus 181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~---~------~~~~~~~~l~i~~~~~~d-~G 249 (471)
|.+.+.++....+.+++.++|.|.+.+.+|. ..++|++|+..+..... . ..+...+.|.+......+ ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 4444444433344467789999999666777 59999999866432211 1 112223346655544433 56
Q ss_pred EEEEEEEcCCCceE
Q psy17058 250 KYTCIAENSAGKEV 263 (471)
Q Consensus 250 ~Y~C~~~~~~~~~~ 263 (471)
.|+|.+.+......
T Consensus 83 ~ytC~V~H~g~~~~ 96 (115)
T cd05769 83 TFTCIVQFYGGTDT 96 (115)
T ss_pred eEEEEEEEeCCccc
Confidence 99999988755443
No 349
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.40 E-value=0.00074 Score=47.70 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=39.6
Q ss_pred EEEEEEccCCCCC-CeEEEEeCCCCCCcCC-C-------ceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 199 ADIQCVLEAGEPS-PTQTWIRPDNDGKFGP-D-------VEVYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 199 ~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~-~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
++|.|.+.+.+|. ..++|+|++..+.... . ...+...+.|.|......+...|+|++.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999666676 6999999987522210 0 0011113346665556677889999998764
No 350
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.39 E-value=0.00084 Score=46.21 Aligned_cols=60 Identities=30% Similarity=0.572 Sum_probs=43.4
Q ss_pred EEEEEEccCCCCCCeEEEEeCCCCCCcCC------CceEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGP------DVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 199 ~~L~C~~~~~~p~~~v~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
+.|.|.+ .+.+...+.|++++....... ..........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689999 446778999999876533221 11122335579999999999999999998765
No 351
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.36 E-value=0.00029 Score=51.79 Aligned_cols=72 Identities=19% Similarity=0.377 Sum_probs=46.7
Q ss_pred cEEEcCCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc-----------cCcEEEEcCCCCCCCeEEEEEE
Q psy17058 93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI-----------AGETLIINGITKADEGVYICSI 159 (471)
Q Consensus 93 ~v~~~p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~L~i~~v~~~D~G~Y~C~~ 159 (471)
.|...+...... |+.+.|.|. .++|.+.++|+.+++........ ..+.|.+..-..++...++|.+
T Consensus 2 ~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~ 80 (89)
T PF08205_consen 2 EITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA 80 (89)
T ss_dssp EEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE
T ss_pred EeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE
Confidence 344444333333 789999998 88999999999994443110000 2346777766666788899999
Q ss_pred EecCCc
Q psy17058 160 QNAQGN 165 (471)
Q Consensus 160 ~~~~~~ 165 (471)
.+....
T Consensus 81 ~~~~~~ 86 (89)
T PF08205_consen 81 SHPALS 86 (89)
T ss_dssp EETTCC
T ss_pred ECCccC
Confidence 987543
No 352
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.35 E-value=0.00069 Score=50.04 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=43.0
Q ss_pred cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCCCce
Q psy17058 195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 262 (471)
.++.++|.|.+.+..|. ..++|++++..+.... ... .+...+.|.+..-...+...|+|++.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 45668999999665675 6999999987642210 000 11223345555444456789999998875443
No 353
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.34 E-value=0.00097 Score=48.19 Aligned_cols=65 Identities=23% Similarity=0.414 Sum_probs=43.9
Q ss_pred cCCCcEEEEEEEee-cCCC-eEEEEeCCccCCCccc--------ccccCceeEEEEeecCCCCCeEEEEEEEcCCCce
Q psy17058 287 RPGEPLTLECEATG-RPMP-TVSWVKYIAPFDRNLE--------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354 (471)
Q Consensus 287 ~~g~~v~l~C~~~g-~p~~-~i~W~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 354 (471)
..+..+.|.|.+.+ +|.. .|.|++++..+..... .......+.|.+. ..+...|+|.+.+.....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 34889999999998 5644 7999999988653321 1112223344454 566669999999876543
No 354
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.29 E-value=0.0028 Score=46.88 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=38.3
Q ss_pred CCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-ce-EEeeeceE---EEeccCCCCCeEEEEEEEcCCC
Q psy17058 196 GDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-VE-VYQELGVL---RFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 196 g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~~-~~~~~~~l---~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
++.++|.|.+.+..|. ..++|+++++....... .. ....++++ ....+...+.+.|+|++.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999554665 49999999852111110 01 11112221 1223334578999999988654
No 355
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.29 E-value=0.0017 Score=48.07 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=43.3
Q ss_pred CCcEEEEEEEe-ecCCCeEEEEeCCccCCCccc-c---cccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEE
Q psy17058 289 GEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLE-R---DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV 357 (471)
Q Consensus 289 g~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 357 (471)
.....+.|.+. |+|.++|.|+++......... . ......+.|.+.....+|.-.|+|+|.|..-.....
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 34567899984 699999999997222111111 0 112234567776666667779999999987544333
No 356
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.28 E-value=0.0016 Score=48.21 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 106 GSQVTIECK--SNDPSATIKWSKDNQEQLPPNM--------IAGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 106 G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
.....+.|. .+.|.+.|+|+++......... ...+.|.+.....+|...|+|.+.|..-.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 346788999 7899999999997222111111 02346777777777788999999987644
No 357
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.27 E-value=0.00098 Score=50.17 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=42.1
Q ss_pred EEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC----Cc-------eEEeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 193 FIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP----DV-------EVYQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 193 v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~----~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
+..++.++|.|.+.+.+|. ..++|++++..+.... .. ..+...+.|.+..-...+...|+|++.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4457889999999555665 4899999987643211 00 1111133455544444566789999988643
No 358
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.27 E-value=0.0012 Score=48.72 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=45.3
Q ss_pred CcEEEEEEEe-ecCCCeEEEEeCCccCCCccccc----ccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 290 EPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERD----ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 290 ~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
..+.+.|.+. |.|.++|+|+++........... .....+.|.+.....+|...|+|+|.|........+.++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3578899876 58999999999833221111101 112245666666666677799999999875554444443
No 359
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.26 E-value=0.0032 Score=46.54 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=41.1
Q ss_pred EcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCC-CceE-Eee------eceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 194 IVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGP-DVEV-YQE------LGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 194 ~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~-~~~~-~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
..|+.++|.|.+.+.+|.. .++|++++..+.... .... ... .+.|.+ ...+...|+|++.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCC
Confidence 3688899999996666764 999999998743320 0011 111 222333 335677999999886543
No 360
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.16 E-value=0.0018 Score=47.73 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=40.9
Q ss_pred CcEEEEee--CCCCCCeEEEEeCCCCCCCCCc--------ccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 107 SQVTIECK--SNDPSATIKWSKDNQEQLPPNM--------IAGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 107 ~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
..+.+.|. .+.|.+.++|+++......... ...+.|.+..-..+|...|+|++.|....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 45789998 7899999999998322211111 12346777666777788999999987644
No 361
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.13 E-value=0.0016 Score=43.30 Aligned_cols=52 Identities=25% Similarity=0.501 Sum_probs=36.3
Q ss_pred ecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEe
Q psy17058 103 APEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQN 161 (471)
Q Consensus 103 v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 161 (471)
-..|.+|+|+|.... ..+.|.++ +..+.. .+..+.+.+-. +++|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~--~~i~W~~n-~~~~~g---~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSG--DDIKWKKN-DQVSQG---SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCC--CCceEEeC-CccCCC---CCceEEeeccC-CCCceEEEEeCC
Confidence 346899999997221 12999999 444443 23456666666 899999999854
No 362
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.12 E-value=0.0019 Score=43.35 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=37.4
Q ss_pred CCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEc
Q psy17058 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349 (471)
Q Consensus 289 g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 349 (471)
.+.|.|+|.+. .+|.|++ |..+. ...+.+|.+.....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~-------~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEIL-------EVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccc-------cccccEEeccCcccCCCcceEecCcc
Confidence 45799999652 4699999 44432 12267889999999999999999877
No 363
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.07 E-value=0.00092 Score=44.48 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=36.0
Q ss_pred cCCCcEEEEEEEeecCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcC
Q psy17058 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350 (471)
Q Consensus 287 ~~g~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 350 (471)
..|.+|+|+|...+. .+.|.+++..+.. ....+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g--------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQG--------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCC--------CCceEEeeccC-CCCceEEEEeCCC
Confidence 358999999986522 3999999855432 22344444545 8899999999643
No 364
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.03 E-value=0.0022 Score=47.49 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=46.6
Q ss_pred CeeeecCCCceeEEcCCeEEEEEEccCCC-CC-CeEEEEeCCCCCCcCCCce-----EEeeeceEEEeccCCCCCeEEEE
Q psy17058 181 PRIRIHPNASQTFIVGDRADIQCVLEAGE-PS-PTQTWIRPDNDGKFGPDVE-----VYQELGVLRFNNIATGDEGKYTC 253 (471)
Q Consensus 181 p~~~~~~~~~~~v~~g~~~~L~C~~~~~~-p~-~~v~W~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C 253 (471)
|.+.+.++.......+..++|.|.+.+.+ |. ..|+|.++++......... .+...+.|.+..-.......|+|
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC 83 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFAC 83 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEE
Confidence 44444444333444688899999995555 53 6999999986511111111 11113345555444455567999
Q ss_pred EEEcCCC
Q psy17058 254 IAENSAG 260 (471)
Q Consensus 254 ~~~~~~~ 260 (471)
++.+...
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9988643
No 365
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.02 E-value=0.0038 Score=48.48 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=44.7
Q ss_pred ceeEEcCCeEEEEEEccCCC-CCCeEEEEeCCCCCC-------------------cCCCceEEeee----ceEEEeccCC
Q psy17058 190 SQTFIVGDRADIQCVLEAGE-PSPTQTWIRPDNDGK-------------------FGPDVEVYQEL----GVLRFNNIAT 245 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~-p~~~v~W~~~~~~~~-------------------~~~~~~~~~~~----~~l~i~~~~~ 245 (471)
...+.+|++++|.|...... ....+.|||...... ...++...... ..|.|.+++.
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 45678999999999873222 245699998543210 01223232211 2699999999
Q ss_pred CCCeEEEEEEEc
Q psy17058 246 GDEGKYTCIAEN 257 (471)
Q Consensus 246 ~d~G~Y~C~~~~ 257 (471)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998864
No 366
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.00 E-value=0.007 Score=44.65 Aligned_cols=62 Identities=21% Similarity=0.436 Sum_probs=38.7
Q ss_pred cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
.++..+|.|.+.+.+|. ..++|.+||..+..+. ... .+.....|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 46668999999655664 6999999987643211 000 01112234443 346679999998764
No 367
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.00 E-value=0.0046 Score=45.86 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=41.0
Q ss_pred eEEcCCeEEEEEEccCC-CCC-CeEEEEeCCCCCCc-CCCceE------EeeeceEEEeccCCCCCeEEEEEEEcCCC
Q psy17058 192 TFIVGDRADIQCVLEAG-EPS-PTQTWIRPDNDGKF-GPDVEV------YQELGVLRFNNIATGDEGKYTCIAENSAG 260 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~-~p~-~~v~W~~~~~~~~~-~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 260 (471)
.+..|+.++|.|.+.+. +|. ..++|.|+++.... ...... +...+.|.+..-...+...|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 45568999999999555 454 58999998743111 000001 11123344444433456689999988653
No 368
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.99 E-value=0.0033 Score=46.51 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=39.0
Q ss_pred eEEcCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCC-c------eEEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 192 TFIVGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPD-V------EVYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~-~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
.+..+..++|.|.+..-+|. ..++|.++|..+..+.. . ..+...+.|.+..-. ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 34446778999999655665 58999999876432110 0 012223334444322 2446999998854
No 369
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.95 E-value=0.0021 Score=46.04 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=36.3
Q ss_pred cEEEEEEEeecCCC--eEEEEeCCcc--CC------------------Ccccccc--cCceeEEEEeecCCCCCeEEEEE
Q psy17058 291 PLTLECEATGRPMP--TVSWVKYIAP--FD------------------RNLERDE--LTSRAVYTIASVRESDAGQYKCI 346 (471)
Q Consensus 291 ~v~l~C~~~g~p~~--~i~W~~~~~~--~~------------------~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~ 346 (471)
++.|.|.+.....+ .+.|++.... .. ....... .....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46789988754443 7889875421 00 0000001 13457899999999999999996
Q ss_pred E
Q psy17058 347 G 347 (471)
Q Consensus 347 a 347 (471)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 370
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.95 E-value=0.0012 Score=47.28 Aligned_cols=20 Identities=30% Similarity=0.720 Sum_probs=18.1
Q ss_pred cEEEEcCCCCCCCeEEEEEE
Q psy17058 140 ETLIINGITKADEGVYICSI 159 (471)
Q Consensus 140 ~~L~i~~v~~~D~G~Y~C~~ 159 (471)
.+|.|.+++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 57999999999999999963
No 371
>PHA02633 hypothetical protein; Provisional
Probab=96.94 E-value=0.0023 Score=41.67 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.8
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEe
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~ 176 (471)
.+..|.|.++..+|+|.|.|..+|..-. ...+..++|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEe
Confidence 5668999999999999999999986655 4455555554
No 372
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.89 E-value=0.0058 Score=44.71 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred EecCCCcEEEEEEEee-cCC--CeEEEEeCCccCCCccccc------ccCceeEEEEeecCCCCCe-EEEEEEEcCC
Q psy17058 285 SVRPGEPLTLECEATG-RPM--PTVSWVKYIAPFDRNLERD------ELTSRAVYTIASVRESDAG-QYKCIGKNSA 351 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g-~p~--~~i~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~ 351 (471)
.+.+|..+++.|.+.+ +|. ..+.|+++...+....... .......+++... .+|.| .|+|.|.-..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 4578999999999976 665 4799998776655332211 1123345666554 55555 9999987543
No 373
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.87 E-value=0.0044 Score=41.60 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=41.8
Q ss_pred cCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe
Q psy17058 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 272 (471)
..++|.|.|.+ ..+|.|++ |..+.... ..+|.|.....+-.|.|.|.+++ .+....|.|++
T Consensus 5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 5 SEGKVFLKCNG-----ATNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred cCceEEEEecC-----CCcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 34689999975 25699999 55422111 45688888888999999999866 23344555554
No 374
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.82 E-value=0.0053 Score=46.41 Aligned_cols=64 Identities=11% Similarity=0.271 Sum_probs=44.4
Q ss_pred EcCCceeecCCCcEEEEee-CCC--CC-CeEEEEeCCCCCCC----------------CCcc-------cCcEEEEcCCC
Q psy17058 96 VTPRQQSAPEGSQVTIECK-SND--PS-ATIKWSKDNQEQLP----------------PNMI-------AGETLIINGIT 148 (471)
Q Consensus 96 ~~p~~~~v~~G~~v~l~C~-~~~--p~-~~v~W~~~~~~~~~----------------~~~~-------~~~~L~i~~v~ 148 (471)
+++....+..|..++|.|. ++. .. ..+.|+|+-...++ .+.. ..-.|+|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 3455677889999999998 443 22 46899997322110 0000 33489999999
Q ss_pred CCCCeEEEEEE
Q psy17058 149 KADEGVYICSI 159 (471)
Q Consensus 149 ~~D~G~Y~C~~ 159 (471)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999965
No 375
>KOG0613|consensus
Probab=96.70 E-value=0.025 Score=59.65 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=105.1
Q ss_pred EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEe----------------CCceeeCC--CccEEecCCCcEEEEEEEe
Q psy17058 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT----------------LPAVTITP--SEYVSVRPGEPLTLECEAT 299 (471)
Q Consensus 238 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~----------------~p~~~~~~--~~~~~~~~g~~v~l~C~~~ 299 (471)
..|.+....+.+.|+|...+..+.....+...+.. ++...+.. ...+.+..+..+.+.|...
T Consensus 280 ~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~ 359 (1205)
T KOG0613|consen 280 KTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALS 359 (1205)
T ss_pred ccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccccc
Confidence 44555555666788888777665543333222221 11111111 1123566788899999999
Q ss_pred ecCCCe-EEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCCCCCCCCCC
Q psy17058 300 GRPMPT-VSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374 (471)
Q Consensus 300 g~p~~~-i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~ 374 (471)
+.+.+. +.|++++....... ..........+.|..+...+.+.|.|.|.|..|.........|...+..
T Consensus 360 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g------ 433 (1205)
T KOG0613|consen 360 GTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG------ 433 (1205)
T ss_pred CCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC------
Confidence 988885 99999765543221 1222334556788899999999999999999998765544444433200
Q ss_pred CCCccccCCCcccCCCCCCCceEEEcCCcceEEeeecCCeeEEcCCeeeeeCC--CeEEEEEEecccCC--ceEEEecCC
Q psy17058 375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPG--DIANIRCSAIGATP--ISIRWQPLQ 450 (471)
Q Consensus 375 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~y~c~~~~p~~~~~~~~~~~~~g--~~~~l~C~~~g~p~--~~v~W~~~g 450 (471)
..++.+.. ....+...+ +.+.+.|.+.++|. ..++|++++
T Consensus 434 -----------------------------------t~~~~~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~ 477 (1205)
T KOG0613|consen 434 -----------------------------------TQPPKFKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG 477 (1205)
T ss_pred -----------------------------------CCCccccc-cccccccccCCcccccccCCCCccccceeEeeccCC
Confidence 01222222 112333334 77888899988874 466778887
Q ss_pred CCCCC
Q psy17058 451 GYFPS 455 (471)
Q Consensus 451 ~~l~~ 455 (471)
-+...
T Consensus 478 ~~~s~ 482 (1205)
T KOG0613|consen 478 LPLSD 482 (1205)
T ss_pred ccccc
Confidence 66543
No 376
>PHA02633 hypothetical protein; Provisional
Probab=96.68 E-value=0.0082 Score=39.19 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=35.9
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 366 (471)
....|.|-++..+|+|.|.|..+|..-....++.|.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 55678899999999999999999998888888999988753
No 377
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.66 E-value=0.012 Score=43.56 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=39.4
Q ss_pred cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCC---Cce-----EEeeeceEEEeccCCCCCeEEEEEEEcCC
Q psy17058 195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGP---DVE-----VYQELGVLRFNNIATGDEGKYTCIAENSA 259 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~---~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 259 (471)
.++.++|.|.+.+..|. ..++|+++|.. .... ... .+...+.|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999665665 58999999885 2210 000 11112335555443334668999998865
No 378
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.66 E-value=0.009 Score=43.91 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=42.5
Q ss_pred CCcEEEcCCceeecCCCcEEEEee-CC-C-CCCeEEEEeCCCCCCCCCcc------cCcEEEE---cCCCCCCCeEEEEE
Q psy17058 91 ANEVQVTPRQQSAPEGSQVTIECK-SN-D-PSATIKWSKDNQEQLPPNMI------AGETLII---NGITKADEGVYICS 158 (471)
Q Consensus 91 ~~~v~~~p~~~~v~~G~~v~l~C~-~~-~-p~~~v~W~~~~~~~~~~~~~------~~~~L~i---~~v~~~D~G~Y~C~ 158 (471)
+|.+.+.... .+..|+..+|.|. .+ + +...++|+++ |..+.+... .++++.+ ..+...+...|.|.
T Consensus 1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~ 78 (93)
T cd05770 1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACR 78 (93)
T ss_pred CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEE
Confidence 3555554322 2456777899999 44 3 3468999999 655442211 2222222 23456678889999
Q ss_pred EEecC
Q psy17058 159 IQNAQ 163 (471)
Q Consensus 159 ~~~~~ 163 (471)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd05770 79 VRHNS 83 (93)
T ss_pred EEECC
Confidence 98854
No 379
>KOG0613|consensus
Probab=96.63 E-value=0.0089 Score=62.90 Aligned_cols=251 Identities=14% Similarity=0.015 Sum_probs=147.2
Q ss_pred CceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEee
Q psy17058 99 RQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177 (471)
Q Consensus 99 ~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~ 177 (471)
......+++...|.|. .....+.+.|+.+ .-........+.++.|.+....+.+.|+|...+..+. ........+..
T Consensus 237 ~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~-~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q-~~~~v~~~~~i 314 (1205)
T KOG0613|consen 237 SMSVTLEASDRKIQLTLRAPRGPYSAHILG-YLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQ-DRFKVTEEAPI 314 (1205)
T ss_pred ccccccchhheeeeEEeecCCCchHHHHhc-chhhhcccCCCccccccccCCccccceeeecccCCcc-cceeeeEEeec
Confidence 3344667788888888 6666677777776 2221112225567778888888889999988877666 32222222211
Q ss_pred ----cc----------CCeeeec--CCCceeEEcCCeEEEEEEccCCCCCC-eEEEEeCCCCCCcCCC--ceE--Eeeec
Q psy17058 178 ----RE----------MPRIRIH--PNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPD--VEV--YQELG 236 (471)
Q Consensus 178 ----~~----------~p~~~~~--~~~~~~v~~g~~~~L~C~~~~~~p~~-~v~W~~~~~~~~~~~~--~~~--~~~~~ 236 (471)
.. ++...+. .........+..+++.|.. .+.+.+ .+.|++++........ ... .....
T Consensus 315 ~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~ 393 (1205)
T KOG0613|consen 315 GKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH 393 (1205)
T ss_pred cccccCchhhhhhccCCccccccccccceeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCc
Confidence 00 1111111 1112334567789999988 666666 4999987665333321 111 11133
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCc------eeeCCCccEEecCCCcEEEEEEEeecCCC--eEEE
Q psy17058 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA------VTITPSEYVSVRPGEPLTLECEATGRPMP--TVSW 308 (471)
Q Consensus 237 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~------~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~i~W 308 (471)
.+.|..+...+.+.|.|.+.|..+.........+...+. +............-+.+.+.|...+.+.+ .++|
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt 473 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTT 473 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEee
Confidence 577788888899999999999888765444444443221 11111111122334778889998877744 5667
Q ss_pred EeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCC
Q psy17058 309 VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 352 (471)
++++................+|.+.-....++|.|.-......+
T Consensus 474 ~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 474 IKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred ccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 77766655443333344556777777888888888655444333
No 380
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.63 E-value=0.01 Score=43.40 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=41.5
Q ss_pred EEcCCeEEEEEEccCCCCC--CeEEEEeCCCCCCcCCCce------EEeeeceEEEeccCCCCCe-EEEEEEEcC
Q psy17058 193 FIVGDRADIQCVLEAGEPS--PTQTWIRPDNDGKFGPDVE------VYQELGVLRFNNIATGDEG-KYTCIAENS 258 (471)
Q Consensus 193 v~~g~~~~L~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~ 258 (471)
+.+|..+++.|.+....|. ..+.|++....+....... .......+.+... ++|.| .|+|+|...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4689999999999777776 6899998655433222111 0111234555554 56665 999999643
No 381
>PHA02982 hypothetical protein; Provisional
Probab=96.36 E-value=0.021 Score=47.27 Aligned_cols=112 Identities=15% Similarity=0.285 Sum_probs=70.0
Q ss_pred ceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCc----------------c---------cCcEEEEcCCCCCCC
Q psy17058 100 QQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM----------------I---------AGETLIINGITKADE 152 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~----------------~---------~~~~L~i~~v~~~D~ 152 (471)
++....|+.|.|.|. .+.......|+++++..+.... . ..++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 455777999999999 4555567899987543332100 0 457999999999999
Q ss_pred eEEEEEEEecCCceeeeeEEEEEeeccCCeeeecCCCceeEEc-CCeEEEEEEccCCCCCCeEEEEeCCC
Q psy17058 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV-GDRADIQCVLEAGEPSPTQTWIRPDN 221 (471)
Q Consensus 153 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~v~~-g~~~~L~C~~~~~~p~~~v~W~~~~~ 221 (471)
|-|+|++....+.......-+.|+... +.. ...+ ...-.+.|-+ .+....-..|.-+|-
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~---V~~------~W~e~nNeT~V~CyV-gS~~~dvp~W~V~GV 172 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKED---ILY------VVEEHNNETIITCFV-GSKHGDVPRFIVAGI 172 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecce---EEE------EEEecCCeEEEEEEE-EeccCCCccEEEeeE
Confidence 999999987665534445555553111 110 0111 2344678988 443333238877654
No 382
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.20 E-value=0.016 Score=41.72 Aligned_cols=64 Identities=17% Similarity=0.371 Sum_probs=41.4
Q ss_pred cCCeEEEEEEccCCCCC-CeEEEEeCCCCCCcCCCce--E------EeeeceEEEeccCCCCCeEEEEEEEcCCCc
Q psy17058 195 VGDRADIQCVLEAGEPS-PTQTWIRPDNDGKFGPDVE--V------YQELGVLRFNNIATGDEGKYTCIAENSAGK 261 (471)
Q Consensus 195 ~g~~~~L~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~--~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 261 (471)
.++.++|.|.+.+.+|. ..+.|++++..+....... . +...+.|.+. ..+...|+|++.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999666675 4899999987643221111 1 1112234544 56667999999886543
No 383
>KOG1480|consensus
Probab=96.17 E-value=0.0033 Score=62.11 Aligned_cols=79 Identities=28% Similarity=0.512 Sum_probs=61.9
Q ss_pred CCceeecCCCcEEEEee--CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeE
Q psy17058 98 PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGNVFQDYA 171 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~--~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~ 171 (471)
|.-..|..+..+.+.|+ .+.|.+.+.|+++ +..+..... ....|++..+...|.|+|+|++.|..+......+
T Consensus 136 p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~-e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~ 214 (909)
T KOG1480|consen 136 PVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN-EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPA 214 (909)
T ss_pred hhhheecccccccccccCcccchhhhhhcccc-CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccce
Confidence 55667889999999999 7889999999999 555544222 5678999999999999999999998776455555
Q ss_pred EEEEee
Q psy17058 172 SIQVDK 177 (471)
Q Consensus 172 ~l~v~~ 177 (471)
.+.|.+
T Consensus 215 ~v~vyv 220 (909)
T KOG1480|consen 215 TVQVYV 220 (909)
T ss_pred EEEEEE
Confidence 555543
No 384
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.99 E-value=0.047 Score=41.36 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=43.6
Q ss_pred EEecCCCcEEEEEEEeecCC---CeEEEEeCCccC-C--------------Cc----ccccccCceeEEEEeecCCCCCe
Q psy17058 284 VSVRPGEPLTLECEATGRPM---PTVSWVKYIAPF-D--------------RN----LERDELTSRAVYTIASVRESDAG 341 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~---~~i~W~~~~~~~-~--------------~~----~~~~~~~~~~~l~i~~~~~~d~G 341 (471)
..+..|..++|+|.+.|.-. -.+.|.|..... + .. .........-+|.|.+++.+|++
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 46778999999999977433 368898853221 1 00 11122334568999999999999
Q ss_pred EEEEEE
Q psy17058 342 QYKCIG 347 (471)
Q Consensus 342 ~Y~C~a 347 (471)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999963
No 385
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.50 E-value=0.013 Score=45.46 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=47.2
Q ss_pred EecCCCcEEEEEEEeec-----CCCeEEEEeCCccCCCccc---------------ccccCceeEEEEeecCCCCCeEEE
Q psy17058 285 SVRPGEPLTLECEATGR-----PMPTVSWVKYIAPFDRNLE---------------RDELTSRAVYTIASVRESDAGQYK 344 (471)
Q Consensus 285 ~~~~g~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d~G~Y~ 344 (471)
...-+++|.|.|.+... +...+.|..++..+-.... .....++.+|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34568899999999741 1225999988765421100 112234566777775544 79999
Q ss_pred EEEEcCCCceEEEEEEEEecC
Q psy17058 345 CIGKNSAGTEEKVITVAVEHR 365 (471)
Q Consensus 345 C~a~n~~g~~~~~~~l~V~~~ 365 (471)
|.|.......+..+.|..+..
T Consensus 102 CeVt~~~~ege~~i~Lk~~~~ 122 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYRVV 122 (130)
T ss_dssp EEEEETTEEEEEEEEEEE---
T ss_pred EEEEecCCCceEEEEEEEEEE
Confidence 999998888888888887654
No 386
>PHA02982 hypothetical protein; Provisional
Probab=95.45 E-value=0.16 Score=42.38 Aligned_cols=116 Identities=11% Similarity=0.187 Sum_probs=71.6
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCc-------------------CC--CceEEeeeceEEEeccCCCCCeE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-------------------GP--DVEVYQELGVLRFNNIATGDEGK 250 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~-------------------~~--~~~~~~~~~~l~i~~~~~~d~G~ 250 (471)
....++++.|.|....+..-....|++++..... .. ........++|+|.++..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 4557999999999866655668899986532110 00 11122335689999999999999
Q ss_pred EEEEEEcCCCce-EEEEEEEEEeCCceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCCc
Q psy17058 251 YTCIAENSAGKE-VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA 313 (471)
Q Consensus 251 Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~~ 313 (471)
|+|++....+.. .....|.|+....+.. ...-.....+.|-+-....+-..|.-+|-
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 999998866553 3355666642221111 11123345678988654444348887654
No 387
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.30 E-value=0.03 Score=48.56 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 118 PSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 118 p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
..|.+.|...++..+.++.. ..+.|++.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 45789999998888877643 67889999999999999999987643
No 388
>KOG4597|consensus
Probab=95.06 E-value=0.031 Score=52.32 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=63.6
Q ss_pred EEecCCCcEEEEEEEeecCCCeEEEEeC---CccCC--Cc--ccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEE
Q psy17058 284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFD--RN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356 (471)
Q Consensus 284 ~~~~~g~~v~l~C~~~g~p~~~i~W~~~---~~~~~--~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 356 (471)
..+..+++..++|-+.|.+.+.|+|.+- ++.+. .+ .......+...|.|-+....|+|.|+|.|.|..|...+
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence 4677899999999999999999999752 22211 11 11223456778999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy17058 357 VITVAVEHR 365 (471)
Q Consensus 357 ~~~l~V~~~ 365 (471)
.+.+.+...
T Consensus 286 dv~c~s~~g 294 (560)
T KOG4597|consen 286 DVPCSSVKG 294 (560)
T ss_pred cceeeeecc
Confidence 988876643
No 389
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.95 E-value=0.023 Score=44.05 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=40.9
Q ss_pred cCCeEEEEEEccCC----CCCCeEEEEeCCCCCCcCC------------Cce---EEeeeceEEEeccCCCCCeEEEEEE
Q psy17058 195 VGDRADIQCVLEAG----EPSPTQTWIRPDNDGKFGP------------DVE---VYQELGVLRFNNIATGDEGKYTCIA 255 (471)
Q Consensus 195 ~g~~~~L~C~~~~~----~p~~~v~W~~~~~~~~~~~------------~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~ 255 (471)
-++++.|.|.+..- .+...+.|.+++..+-.-. +.. +...+.+|.+...+.- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 47899999998321 1334799998776421100 000 1111334777765444 89999999
Q ss_pred EcCCCceEEEEEEEE
Q psy17058 256 ENSAGKEVMNAYIHV 270 (471)
Q Consensus 256 ~~~~~~~~~~~~l~V 270 (471)
..........+.|..
T Consensus 105 t~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 105 TELSREGETTIELKY 119 (130)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EecCCCceEEEEEEE
Confidence 877666666666655
No 390
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.53 E-value=2.7 Score=40.66 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=49.5
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEee------ccCCe------------eeecCCCceeEEcCCeE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK------REMPR------------IRIHPNASQTFIVGDRA 199 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~------~~~p~------------~~~~~~~~~~v~~g~~~ 199 (471)
..+.|+|.+++.+++|.|+=..++..+. ......|.|.. ..+|. +.+..-.......|+++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~-~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf 210 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMM-KHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF 210 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCce-EEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence 4678999999999999999988875553 44444455542 00111 11111223345679988
Q ss_pred EEEEEccCCC--C--CCeEEEEeCC
Q psy17058 200 DIQCVLEAGE--P--SPTQTWIRPD 220 (471)
Q Consensus 200 ~L~C~~~~~~--p--~~~v~W~~~~ 220 (471)
.+.-...... + ..++.|++-.
T Consensus 211 ~lsi~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 211 DLSVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred eEeEEEeeccCCCCceEEEEEEEec
Confidence 8866553222 2 2479998643
No 391
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.17 E-value=2.7 Score=39.91 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=21.9
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
.+.+|.|.+++.+|+|.|+-.+....
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~ 147 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAP 147 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCC
Confidence 56789999999999999999875443
No 392
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.11 E-value=0.11 Score=45.21 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCC
Q psy17058 302 PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351 (471)
Q Consensus 302 p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 351 (471)
..|.+.|...++..-......+...++.|.+.+....++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 35789999876555444433456778889999999999999999998764
No 393
>PHA03052 Hypothetical protein; Provisional
Probab=93.00 E-value=0.21 Score=33.30 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.0
Q ss_pred CeeeeeCCCeEEEEEEec-ccCC--ceEEEecCCCCCCCce
Q psy17058 420 VRQTVKPGDIANIRCSAI-GATP--ISIRWQPLQGYFPSHV 457 (471)
Q Consensus 420 ~~~~~~~g~~~~l~C~~~-g~p~--~~v~W~~~g~~l~~~~ 457 (471)
....+..|..+++.|.+. |.|. +.|.|.-||..+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 446778899999999998 4443 5889999999994443
No 394
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.84 E-value=0.76 Score=34.08 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=28.2
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v 175 (471)
.+-.|.|..++..|+|.|.-++.+..|........|.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 56699999999999999999999988875444444443
No 395
>KOG4597|consensus
Probab=92.72 E-value=0.17 Score=47.63 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=58.6
Q ss_pred cCCceeecCCCcEEEEee-CCCCCCeEEEEeC--CCCCCCCCc---------ccCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKD--NQEQLPPNM---------IAGETLIINGITKADEGVYICSIQNAQG 164 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~-~~~p~~~v~W~~~--~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~ 164 (471)
-|....+..|++..++|- .+.+.+.|+|.+. +++.+-... .....|.|-+....|+|.|+|.+.+..|
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 355677899999999999 8999999999765 122111110 1456899999999999999999999888
Q ss_pred ceeeeeEEEEEe
Q psy17058 165 NVFQDYASIQVD 176 (471)
Q Consensus 165 ~~~~~~~~l~v~ 176 (471)
. ....+.+.+.
T Consensus 282 ~-~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 F-LRRDVPCSSV 292 (560)
T ss_pred e-eeccceeeee
Confidence 7 5445555544
No 396
>PHA03286 envelope glycoprotein E; Provisional
Probab=92.70 E-value=8.7 Score=36.50 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=51.4
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc---CCe-------------eeecCCCceeEEcCCeEEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE---MPR-------------IRIHPNASQTFIVGDRADI 201 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---~p~-------------~~~~~~~~~~v~~g~~~~L 201 (471)
..+.|+|.+++.+++|.|+=..+|..+........|.|.... +|. +.+..........|+++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 457899999999999999999888766534444555553221 111 1222233445568999877
Q ss_pred EEEccCC----CCCCeEEEEeC
Q psy17058 202 QCVLEAG----EPSPTQTWIRP 219 (471)
Q Consensus 202 ~C~~~~~----~p~~~v~W~~~ 219 (471)
.-..... .-...+.|++-
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEEeecccCCCceEEEEEEEe
Confidence 7655311 12347899864
No 397
>PHA03281 envelope glycoprotein E; Provisional
Probab=92.25 E-value=12 Score=36.48 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=48.6
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc-----CCee---------eecCCCceeEEcCCeEEEEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-----MPRI---------RIHPNASQTFIVGDRADIQC 203 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-----~p~~---------~~~~~~~~~v~~g~~~~L~C 203 (471)
..+.|+|.+++.+++|.|+=-.+...|........|.|.... .|.+ .+..-.......|+++.|.-
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 456999999999999999988775555423323444454222 1211 11112233456799888777
Q ss_pred EccCC----CCCCeEEEEeC
Q psy17058 204 VLEAG----EPSPTQTWIRP 219 (471)
Q Consensus 204 ~~~~~----~p~~~v~W~~~ 219 (471)
.+... .-...+.|++-
T Consensus 376 ~L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred EEeeeccCCCceeEEEEEEe
Confidence 66322 11247999864
No 398
>PHA03042 CD47-like protein; Provisional
Probab=92.13 E-value=0.59 Score=40.92 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=38.0
Q ss_pred CCcEEEEeeCCC------CCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCC
Q psy17058 106 GSQVTIECKSND------PSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG 164 (471)
Q Consensus 106 G~~v~l~C~~~~------p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~ 164 (471)
.+++.+.|...+ ....+.|..++......+..+..+|.+.... +-.|+|+|++.+...
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~-~l~GNYTCEv~~l~n 94 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSK-NLSGNYTCEAINKFN 94 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEeccc-cCCCceeEEEeeccc
Confidence 678999999333 3457999999443333222244567766544 448999999987544
No 399
>PHA03042 CD47-like protein; Provisional
Probab=91.32 E-value=1 Score=39.56 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=48.3
Q ss_pred ecCCCcEEEEEEEeec-----CCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEE
Q psy17058 286 VRPGEPLTLECEATGR-----PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360 (471)
Q Consensus 286 ~~~g~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 360 (471)
..-++++.+.|.++.- ....+.|..++..+-.... ...++|.+.- ...-.|+|+|+|.+...+....+.|
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~----tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN----TNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC----CcceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence 3458889999999742 2336999999877643222 1335555544 3445799999999877666666666
Q ss_pred EEe
Q psy17058 361 AVE 363 (471)
Q Consensus 361 ~V~ 363 (471)
.-+
T Consensus 103 k~~ 105 (286)
T PHA03042 103 QYV 105 (286)
T ss_pred EEE
Confidence 555
No 400
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.71 E-value=1 Score=32.76 Aligned_cols=63 Identities=17% Similarity=0.455 Sum_probs=41.5
Q ss_pred EcCCceeecCCCcEEEEee-C-----CCCCCeEEEEeCCCCCCCCCcc-----cCcEEEEcCCCCCCCeEEEEEE
Q psy17058 96 VTPRQQSAPEGSQVTIECK-S-----NDPSATIKWSKDNQEQLPPNMI-----AGETLIINGITKADEGVYICSI 159 (471)
Q Consensus 96 ~~p~~~~v~~G~~v~l~C~-~-----~~p~~~v~W~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~ 159 (471)
+.|+...+..|+.+++.|. . ......+.|..+ +..++.... ..+.+++.+.....+-.|-|..
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln-~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLN-GEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECS-SCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEEC-CEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 4566778999999999998 2 125568999998 557766543 3356777777666666677754
No 401
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=90.69 E-value=0.53 Score=45.55 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=13.8
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc------CCe-----------eeecCCCceeEEcCCeEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE------MPR-----------IRIHPNASQTFIVGDRAD 200 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~------~p~-----------~~~~~~~~~~v~~g~~~~ 200 (471)
..+.|.|.+++.+|+|.|+=...+..+........|.|.... .|. +.+..........|+++.
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~ 166 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFH 166 (439)
T ss_dssp -----------------------------------------------------------SEEEEEE--SEEE--TT--EE
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEE
Confidence 567899999999999999999887665533334444444211 111 122223334456799877
Q ss_pred EEEEccCC--C-C--CCeEEEEeCC
Q psy17058 201 IQCVLEAG--E-P--SPTQTWIRPD 220 (471)
Q Consensus 201 L~C~~~~~--~-p--~~~v~W~~~~ 220 (471)
|.-.+... . + ..++.|++-.
T Consensus 167 ~~v~l~~~~~d~~~f~~~i~W~~~~ 191 (439)
T PF02480_consen 167 LSVHLQSEAHDDPPFSLEIDWYYMP 191 (439)
T ss_dssp ---EEEEEESSS--EEEEEEEEEE-
T ss_pred EeEEEEeccCCCCCeeEEEEEEEec
Confidence 76654211 1 1 2479998743
No 402
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.56 E-value=0.63 Score=34.49 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=31.9
Q ss_pred ccCceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy17058 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVE 363 (471)
Q Consensus 323 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 363 (471)
....+..|.|+.++.+|+|.|.-++++..|.. ...+.+.|-
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 34566789999999999999999999999987 455777663
No 403
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.54 E-value=1.5 Score=40.33 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.6
Q ss_pred cEEEEEEEee-cCCC-eEEEEeC
Q psy17058 291 PLTLECEATG-RPMP-TVSWVKY 311 (471)
Q Consensus 291 ~v~l~C~~~g-~p~~-~i~W~~~ 311 (471)
.++|+|.|.| +|.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 6799999999 5543 7999999
No 404
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.53 E-value=1.1 Score=32.50 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=41.0
Q ss_pred eeEEcCCeEEEEEEccCCC----CCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE
Q psy17058 191 QTFIVGDRADIQCVLEAGE----PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256 (471)
Q Consensus 191 ~~v~~g~~~~L~C~~~~~~----p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 256 (471)
..+..|+.++..|.+.... ....+.|..++..++......+....+.+++.+......-.|.|...
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 3678999999999985442 34589999988864444333333333567777776666667777653
No 405
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.51 E-value=2.4 Score=30.06 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=24.8
Q ss_pred ceeEEEEeecCCCCCeEEEEEE-EcCCCceEEEEEEEE
Q psy17058 326 SRAVYTIASVRESDAGQYKCIG-KNSAGTEEKVITVAV 362 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 362 (471)
....+.......+|+|.+.|.| .+..-.......|.|
T Consensus 41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 3445677778889999999999 554444444444443
No 406
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=89.44 E-value=1.4 Score=32.01 Aligned_cols=72 Identities=21% Similarity=0.333 Sum_probs=44.3
Q ss_pred cEEEEEE-EeecCCCeEEEEeCCccCCCcc----cccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 291 PLTLECE-ATGRPMPTVSWVKYIAPFDRNL----ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 291 ~v~l~C~-~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
.+.-.|. +.|.|+++|+|.-+-....... ......-.+.+.+-.....|.-..+|.+.+..-....++.|.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~v 98 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLNV 98 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEecC
Confidence 3456799 5679999999985422211111 1111223345566666777888999999997665566666543
No 407
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=89.22 E-value=2 Score=31.20 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=46.6
Q ss_pred CcEEEcCCceeecCCCcEEEEeeCCCCCC-eEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCceeeee
Q psy17058 92 NEVQVTPRQQSAPEGSQVTIECKSNDPSA-TIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDY 170 (471)
Q Consensus 92 ~~v~~~p~~~~v~~G~~v~l~C~~~~p~~-~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 170 (471)
..+.+.|+...|..|+++.+.|..+-+.+ .+.|.-.-.+..-.....-..+.|.|++. | ..-.|.+.-.... ....
T Consensus 4 f~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q-~~~~ 80 (91)
T PF03921_consen 4 FEVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQ-SSAS 80 (91)
T ss_dssp S-EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEE-EEEE
T ss_pred eEEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeE-EEeE
Confidence 46788899999999999999999433333 34443220000000000224677889986 5 4667988754333 4445
Q ss_pred EEEEEe
Q psy17058 171 ASIQVD 176 (471)
Q Consensus 171 ~~l~v~ 176 (471)
..|+|.
T Consensus 81 ~~ItVY 86 (91)
T PF03921_consen 81 ANITVY 86 (91)
T ss_dssp EEEEEE
T ss_pred EeeEEe
Confidence 555554
No 408
>KOG1026|consensus
Probab=88.86 E-value=0.99 Score=46.18 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 271 (471)
.+..|..+++.|.. .+.|.+...|+.++...................+.+ ++|.+.|..+....++.+.+.
T Consensus 203 ~v~~~~~~~~~c~~-~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQ-AGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhcccchheeeeec-ccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence 46678999999999 888999999998776533322211111111111111 889998888877767666666
Q ss_pred eCCceeeCCCccEEecCCCcEEEEEEEe---ecCCCeEEEEeCCccCCCccc--ccccCceeEEEEeecCCCCCeEEEEE
Q psy17058 272 TLPAVTITPSEYVSVRPGEPLTLECEAT---GRPMPTVSWVKYIAPFDRNLE--RDELTSRAVYTIASVRESDAGQYKCI 346 (471)
Q Consensus 272 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~---g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~ 346 (471)
.++........ .++ .-.|... +.|.+...|..++..+..... ........-+........+.|.|+|.
T Consensus 274 ~p~~~~~~~~~-----~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~ 346 (774)
T KOG1026|consen 274 LPKAEVLLCSP-----LSD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLF 346 (774)
T ss_pred cccccccCCCC-----ccc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceee
Confidence 54333222111 011 2345543 456667889888776542111 00111002222222355678999999
Q ss_pred EEcCCCceEEEEEEEEecCC
Q psy17058 347 GKNSAGTEEKVITVAVEHRP 366 (471)
Q Consensus 347 a~n~~g~~~~~~~l~V~~~p 366 (471)
+.|..|.........+...|
T Consensus 347 ~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 347 PELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred ecccCccccccCcCccccCC
Confidence 99999988777777777665
No 409
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=88.58 E-value=21 Score=33.41 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=90.8
Q ss_pred ceeEEcCCeEEEEEEccC-CCCC-CeEEEEeCCCCCCc-----------------CCCceEEe--------eeceEEEec
Q psy17058 190 SQTFIVGDRADIQCVLEA-GEPS-PTQTWIRPDNDGKF-----------------GPDVEVYQ--------ELGVLRFNN 242 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~-~~p~-~~v~W~~~~~~~~~-----------------~~~~~~~~--------~~~~l~i~~ 242 (471)
...+..|..+.|.|.... ++.. ....|+-.+-++.. ...+.+.. ..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 334556999999998732 2333 47899865543210 11122211 146899999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEEeCCceeeCCCccEEecCCC-cEEEEEEEeec--CCCeEEEEeCCccCCCcc
Q psy17058 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE-PLTLECEATGR--PMPTVSWVKYIAPFDRNL 319 (471)
Q Consensus 243 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~ 319 (471)
+..+..|-|+|++............|.|...-.+ ....+|. ...+.|-+... .++.+.|..+|-......
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f-------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFF-------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccEEEE-------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 9999999999999876545555555555421111 1222333 34567887654 345799998875543211
Q ss_pred cc---------cccCceeEEEEeecCCCC-CeEEEEEEEcCCCce
Q psy17058 320 ER---------DELTSRAVYTIASVRESD-AGQYKCIGKNSAGTE 354 (471)
Q Consensus 320 ~~---------~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 354 (471)
.. ...-..+.+.|.+-...| --.-.|+..-..|..
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya 470 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA 470 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence 10 011123456677666556 345677766555544
No 410
>PHA03282 envelope glycoprotein E; Provisional
Probab=86.31 E-value=29 Score=33.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=26.1
Q ss_pred eceEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEE
Q psy17058 235 LGVLRFNNIATGDEGKYTCIAENSAGK--EVMNAYIHVL 271 (471)
Q Consensus 235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~ 271 (471)
+++|.|.+++.+|+|.|+-.+...... ....+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 667999999999999999987543322 2333555553
No 411
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.87 E-value=12 Score=26.60 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE-cCCCceEEEEEEEE
Q psy17058 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE-NSAGKEVMNAYIHV 270 (471)
Q Consensus 212 ~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~V 270 (471)
+.+.|+..+.. .......+.......+|+|.+.|.|. +..........|.+
T Consensus 27 ~~~~l~~~~~k--------~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKK--------SLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCE--------EEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCcc--------ccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45666654432 23335566777888899999999994 44333444444443
No 412
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.00 E-value=3.6 Score=29.90 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=42.5
Q ss_pred eEEEEEEccCCCCCCeEEEEeCCCCCCc-----CCCceEEeeeceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 198 RADIQCVLEAGEPSPTQTWIRPDNDGKF-----GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269 (471)
Q Consensus 198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 269 (471)
.+.-.|.+..|.|++.|+|.-+-..... ..+... .-.+.+.+......|.-..+|.+.+.......++.|+
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~-TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTV-TVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCE-EEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 3456899879999999999854221000 000000 0123456666777788899999988654444445444
No 413
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=83.74 E-value=3.8 Score=37.76 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=18.0
Q ss_pred eEEEEEEccCCCCC-CeEEEEeC
Q psy17058 198 RADIQCVLEAGEPS-PTQTWIRP 219 (471)
Q Consensus 198 ~~~L~C~~~~~~p~-~~v~W~~~ 219 (471)
.++|+|.+.+-+|. ..+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999655665 58999999
No 414
>PHA03240 envelope glycoprotein M; Provisional
Probab=83.64 E-value=1.5 Score=36.65 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=40.7
Q ss_pred ceeecCCCcEEEEee-CCCCCCeEEEEe-------CCCCCCC----------CC----------cc-----cCcEEEEcC
Q psy17058 100 QQSAPEGSQVTIECK-SNDPSATIKWSK-------DNQEQLP----------PN----------MI-----AGETLIING 146 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~-------~~~~~~~----------~~----------~~-----~~~~L~i~~ 146 (471)
++.+.+|+.|+|.-. ...+.-.+.|++ ++|.... ++ .. .+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 456889999999887 556778999999 3232110 00 00 467888999
Q ss_pred CCCCCCeEEEE
Q psy17058 147 ITKADEGVYIC 157 (471)
Q Consensus 147 v~~~D~G~Y~C 157 (471)
+..+|.|+|.-
T Consensus 112 vn~sd~~nYcr 122 (258)
T PHA03240 112 LNLSDAGEYCR 122 (258)
T ss_pred EeecCcchhhh
Confidence 99999999843
No 415
>PHA03283 envelope glycoprotein E; Provisional
Probab=81.14 E-value=34 Score=33.47 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=34.4
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEEecCC
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 366 (471)
..+.|.|.+++.+++|.|+-..++..+.....+.|.|+.++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~ 172 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPP 172 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCC
Confidence 35789999999999999999999988866677888887744
No 416
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=79.85 E-value=2.4 Score=41.66 Aligned_cols=256 Identities=16% Similarity=0.195 Sum_probs=24.3
Q ss_pred cEEEEeeCCCCCCeEEEEeCCCCCCCCCc-----ccCcEEEEcCCCCCC-CeEEEEEEE-ecCCceeeeeEEEEEeeccC
Q psy17058 108 QVTIECKSNDPSATIKWSKDNQEQLPPNM-----IAGETLIINGITKAD-EGVYICSIQ-NAQGNVFQDYASIQVDKREM 180 (471)
Q Consensus 108 ~v~l~C~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~L~i~~v~~~D-~G~Y~C~~~-~~~~~~~~~~~~l~v~~~~~ 180 (471)
.+.|.|. ......+.|....+....... .....|.|..-...- ...|...+. ..... ......+.|.+...
T Consensus 2 ~~~~~C~-~~~~~~y~W~~~~~~~~~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~-~~~~~~~~v~V~~s 79 (440)
T PF02010_consen 2 HVSLNCN-DASTVTYNWTVFSGPSNSIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPG-LSSTDSVTVTVEPS 79 (440)
T ss_dssp ---------------BEEEEES-TT-EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTT-EEEEEEEEEEEE--
T ss_pred Ccccccc-cccceEEEEEEEecCCcCccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCC-ceEEEEEEEEEeec
Confidence 3567894 334467889775222211110 134688888877632 235566666 22222 33344444444333
Q ss_pred Ceee-ecCCCceeEEcCCeEEEEEEccCCCC-------CCeEEEEeCCCCCC--c----CCCceEEeeeceEEEeccCCC
Q psy17058 181 PRIR-IHPNASQTFIVGDRADIQCVLEAGEP-------SPTQTWIRPDNDGK--F----GPDVEVYQELGVLRFNNIATG 246 (471)
Q Consensus 181 p~~~-~~~~~~~~v~~g~~~~L~C~~~~~~p-------~~~v~W~~~~~~~~--~----~~~~~~~~~~~~l~i~~~~~~ 246 (471)
|... +.......+..++.++|.... +.+| ...+.|.-...... - ............+.|......
T Consensus 80 ~l~~~I~gG~~~~~~~~~~i~ldgs~-S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~ 158 (440)
T PF02010_consen 80 PLVAVIKGGSSRTVGYNSDITLDGSQ-SYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLS 158 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeEEcCCccceeecCceEEEeeEE-EecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcC
Confidence 3222 222222233344567777644 3333 24778876543311 0 000111222445666544333
Q ss_pred CCeEEEEEEEcCCCc---eEEEEEEEEE--eCCceeeCCCcc--EEecCCCcEEEEEEEeec----CCCeEEEEe-----
Q psy17058 247 DEGKYTCIAENSAGK---EVMNAYIHVL--TLPAVTITPSEY--VSVRPGEPLTLECEATGR----PMPTVSWVK----- 310 (471)
Q Consensus 247 d~G~Y~C~~~~~~~~---~~~~~~l~V~--~~p~~~~~~~~~--~~~~~g~~v~l~C~~~g~----p~~~i~W~~----- 310 (471)
....|...+.-..+. ......+.+. .+|.+.+..... ..+..++.+.|.-.+.+. ....+.|..
T Consensus 159 ~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~ 238 (440)
T PF02010_consen 159 PGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDG 238 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccc
Confidence 333366665433222 2233334433 234444433221 136777777776555432 234688886
Q ss_pred ---CCccCCC-cccccccCceeEEEEeecCCCCCeEEEE--EEEcCCCce-EEEEEEEEecCC
Q psy17058 311 ---YIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKC--IGKNSAGTE-EKVITVAVEHRP 366 (471)
Q Consensus 311 ---~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~-~~~~~l~V~~~p 366 (471)
....+.. ............|.|..-..+..+.|.. .|.+..+.. ..++.+.+..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP 301 (440)
T PF02010_consen 239 VSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPP 301 (440)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111110 0111122344567777655556666665 444544433 555666666554
No 417
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=79.72 E-value=19 Score=26.22 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=44.3
Q ss_pred ceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEe--eeceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy17058 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267 (471)
Q Consensus 190 ~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 267 (471)
...+..|+++.+.|.. +-..+..+-|.-. +.. ..... .-..+.|.+++. .....|.+.-.......++.
T Consensus 12 ~~vV~~G~Sv~VNCSt-sC~~p~~~GLET~-----L~k-~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCST-SCPQPEKIGLETS-----LSK-TELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp EEEEETTEEEEEEEEE-SSSS-SEEEEESS-----SEE-EEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEEEEE
T ss_pred ccEECCCCCEEEEEcC-CCCCCCcceEEEe-----cCC-cccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEeEEe
Confidence 3467899999999997 3222234444321 111 11111 122467788885 45778999876555677888
Q ss_pred EEEEeCCc
Q psy17058 268 IHVLTLPA 275 (471)
Q Consensus 268 l~V~~~p~ 275 (471)
|.|+.+|.
T Consensus 83 ItVY~~Pe 90 (91)
T PF03921_consen 83 ITVYKPPE 90 (91)
T ss_dssp EEEEB--S
T ss_pred eEEeCCCC
Confidence 88887663
No 418
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=78.79 E-value=41 Score=28.85 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=64.4
Q ss_pred CeEEEEeCCCCCCcCC---CceEEe-----eeceEEE-eccCCCCCeEEEEEEEcCCCce-----EEEEEEEEEeCCcee
Q psy17058 212 PTQTWIRPDNDGKFGP---DVEVYQ-----ELGVLRF-NNIATGDEGKYTCIAENSAGKE-----VMNAYIHVLTLPAVT 277 (471)
Q Consensus 212 ~~v~W~~~~~~~~~~~---~~~~~~-----~~~~l~i-~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~~p~~~ 277 (471)
..++|+.|+..+.... ...... ..++|.+ .+......-..+|.+....... +....-.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 4789999988654221 111111 1234555 2233344458999987543321 222333445555554
Q ss_pred eCCCccEEecCCCcEEEEEEEeecCC--CeEEEEeCCccCCCccccc----ccCceeEEEEeecC--CCCCe--EEEEEE
Q psy17058 278 ITPSEYVSVRPGEPLTLECEATGRPM--PTVSWVKYIAPFDRNLERD----ELTSRAVYTIASVR--ESDAG--QYKCIG 347 (471)
Q Consensus 278 ~~~~~~~~~~~g~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~~----~~~~~~~l~i~~~~--~~d~G--~Y~C~a 347 (471)
+. ...| ...|.+.--|. .++.|.-++.......... -...-+...|.+.. ....| +|+|.+
T Consensus 87 v~------F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l 157 (211)
T PF02124_consen 87 VR------FEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRL 157 (211)
T ss_pred EE------ecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEE
Confidence 32 2333 35588876663 4899998776532111100 01122334444332 22334 999998
Q ss_pred Ec
Q psy17058 348 KN 349 (471)
Q Consensus 348 ~n 349 (471)
..
T Consensus 158 ~G 159 (211)
T PF02124_consen 158 IG 159 (211)
T ss_pred ee
Confidence 64
No 419
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=76.80 E-value=48 Score=28.49 Aligned_cols=126 Identities=19% Similarity=0.341 Sum_probs=59.3
Q ss_pred CeEEEEeCCCCCCCCCcc-------------cCcEEEEc-CCCCCCCeEEEEEEEecCCceeeee--EEEEEeeccCCee
Q psy17058 120 ATIKWSKDNQEQLPPNMI-------------AGETLIIN-GITKADEGVYICSIQNAQGNVFQDY--ASIQVDKREMPRI 183 (471)
Q Consensus 120 ~~v~W~~~~~~~~~~~~~-------------~~~~L~i~-~v~~~D~G~Y~C~~~~~~~~~~~~~--~~l~v~~~~~p~~ 183 (471)
..+.|+.+ +..+..+.. ..++|.+. +...+..=..+|.+.-..+...... +.+.-.+..+|.+
T Consensus 7 ~~~~Wf~d-g~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v 85 (211)
T PF02124_consen 7 VRFRWFED-GNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV 85 (211)
T ss_pred EEEEEEEC-CEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE
Confidence 46889998 445443221 22355552 2233334578999865443312222 2222223344444
Q ss_pred eecCCCceeEEcCCeEEEEEEccCCCC--CCeEEEEeCCCCCCcCCCceEEe----eeceEEEeccCC--CCCe--EEEE
Q psy17058 184 RIHPNASQTFIVGDRADIQCVLEAGEP--SPTQTWIRPDNDGKFGPDVEVYQ----ELGVLRFNNIAT--GDEG--KYTC 253 (471)
Q Consensus 184 ~~~~~~~~~v~~g~~~~L~C~~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~--~d~G--~Y~C 253 (471)
.+. +..| ...|.+ .--| ...+.|.-++............. ..+...|.+... ...| .|+|
T Consensus 86 sv~------F~~g---~AVC~A-~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC 155 (211)
T PF02124_consen 86 SVR------FEDG---YAVCTA-RCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTC 155 (211)
T ss_pred EEE------ecCC---EEEEEc-ceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEE
Confidence 332 2222 344766 4444 26899998776532221111111 122333333222 2334 9999
Q ss_pred EEE
Q psy17058 254 IAE 256 (471)
Q Consensus 254 ~~~ 256 (471)
++.
T Consensus 156 ~l~ 158 (211)
T PF02124_consen 156 RLI 158 (211)
T ss_pred EEe
Confidence 986
No 420
>PHA03189 UL14 tegument protein; Provisional
Probab=75.97 E-value=14 Score=33.13 Aligned_cols=68 Identities=22% Similarity=0.484 Sum_probs=38.9
Q ss_pred CCceeecCCCcEEEEee---CCCCCCeEEE--EeC------------CCCCCCCCcc--------------cCcEEEEc-
Q psy17058 98 PRQQSAPEGSQVTIECK---SNDPSATIKW--SKD------------NQEQLPPNMI--------------AGETLIIN- 145 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~---~~~p~~~v~W--~~~------------~~~~~~~~~~--------------~~~~L~i~- 145 (471)
|.+..+..|+.+++.|. ..-|.+.+.= -.. .|..+..... ....|+++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 55677899999999999 3445554331 111 1111111110 11233332
Q ss_pred CCCCCCCeEEEEEEEecCCc
Q psy17058 146 GITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 146 ~v~~~D~G~Y~C~~~~~~~~ 165 (471)
++..+-+|.|.|...|....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEecccceEEEEeccccce
Confidence 46667899999999986554
No 421
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=75.66 E-value=5.5 Score=28.90 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=28.7
Q ss_pred cCCeeEEcCCeeeeeCC----CeEEEEEEecccCCceEEEecCCCCC
Q psy17058 411 EPPRITLRPVRQTVKPG----DIANIRCSAIGATPISIRWQPLQGYF 453 (471)
Q Consensus 411 ~~p~~~~~~~~~~~~~g----~~~~l~C~~~g~p~~~v~W~~~g~~l 453 (471)
.+++|+.++....+... +...|.+.+.+. ...+.|+-||+.|
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 36777776665443332 256666677666 5599999999999
No 422
>KOG0200|consensus
Probab=72.52 E-value=83 Score=32.47 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=58.3
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEEEeecc-CCeeeecCCCceeEEcCCeEEEEEEccCCCCCCeEEE
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-~p~~~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W 216 (471)
....+.+..+...|.|.|+|.+.+ .. . ...+. .... .+..............+....+ .. ..+...+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~~-~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~ 80 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--IN-L--IISLD-DIVIHRPILLAGENANPNTVVTVGVPL-AF---SIPQPFIKW 80 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--Cc-e--eeEee-cccCcccccccCCCCCcceeeccccee-ee---ecCCCccee
Confidence 456788899999999999999988 11 1 11111 1111 1112222222223344555555 21 222566777
Q ss_pred EeCCCCCC----cCC-------------CceEEeeeceEEEeccCCCCCeEEEEEEEc
Q psy17058 217 IRPDNDGK----FGP-------------DVEVYQELGVLRFNNIATGDEGKYTCIAEN 257 (471)
Q Consensus 217 ~~~~~~~~----~~~-------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 257 (471)
........ ... ..........+.+.++...+.+.|.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 81 GTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 66542110 000 000011233577888999999999998865
No 423
>KOG1026|consensus
Probab=71.52 E-value=11 Score=38.95 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=81.0
Q ss_pred ceeecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----cCcEEEEcCCCCCCCeEEEEEEEecCCceeeeeEEEE
Q psy17058 100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQ 174 (471)
Q Consensus 100 ~~~v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~ 174 (471)
...+..|..+++.|. .+.+.+...|+.+.......... .+....+.+ +.|.+.|..+. ......+.
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~-~~~~v~~~ 271 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVAR-SNPSILLV 271 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhh-cCceeeeE
Confidence 566888999999999 88999999999983332221111 111111111 88998887766 33333333
Q ss_pred EeeccCCeeeecCCCceeEEcCCeEEEEEEcc--CCCCCCeEEEEeCCCCCCcCCCceEEeee--ceEEEeccCCCCCeE
Q psy17058 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLE--AGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGK 250 (471)
Q Consensus 175 v~~~~~p~~~~~~~~~~~v~~g~~~~L~C~~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~ 250 (471)
+. .++......... ++ .-.|... .+.|.+...|..++..+............ .-+.....+..+.|.
T Consensus 272 ~~--~p~~~~~~~~~~-----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~ 342 (774)
T KOG1026|consen 272 VD--LPKAEVLLCSPL-----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGN 342 (774)
T ss_pred Ee--cccccccCCCCc-----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCc
Confidence 33 222211111100 00 1123221 24566778888877653222111111101 122233335678899
Q ss_pred EEEEEEcCCCceEEEEEEEEEe
Q psy17058 251 YTCIAENSAGKEVMNAYIHVLT 272 (471)
Q Consensus 251 Y~C~~~~~~~~~~~~~~l~V~~ 272 (471)
|+|.+.+..|.........+..
T Consensus 343 ~~~~~e~~~g~~~~r~~g~~~~ 364 (774)
T KOG1026|consen 343 YTLFPELPGGKNYCRNPGGFMS 364 (774)
T ss_pred ceeeecccCccccccCcCcccc
Confidence 9999998877654444444433
No 424
>PHA03286 envelope glycoprotein E; Provisional
Probab=67.49 E-value=1.1e+02 Score=29.62 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=31.6
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEEec
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VITVAVEH 364 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~ 364 (471)
..+.|.|.+++.+++|.|+-..+|..|.... .+.|.|.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 4467999999999999999999998877644 46677753
No 425
>PHA03052 Hypothetical protein; Provisional
Probab=67.48 E-value=17 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=25.5
Q ss_pred CCceeecCCCcEEEEee----CCCCCCeEEEEeCCCCCC
Q psy17058 98 PRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQL 132 (471)
Q Consensus 98 p~~~~v~~G~~v~l~C~----~~~p~~~v~W~~~~~~~~ 132 (471)
|..+.+..|+.++|.|. .+...+.|.|.-| +..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N-~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISN-GMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeC-CcEE
Confidence 45677889999999999 2333567888888 6655
No 426
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=67.25 E-value=15 Score=24.60 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=14.7
Q ss_pred ecCCCcEEEEeeCCCCCCeEEEEe
Q psy17058 103 APEGSQVTIECKSNDPSATIKWSK 126 (471)
Q Consensus 103 v~~G~~v~l~C~~~~p~~~v~W~~ 126 (471)
|..|+.++|. +.+...|.||+
T Consensus 2 v~~G~N~TL~---Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV---GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe---CCCCCceEEEE
Confidence 5668888873 44556799994
No 427
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=63.81 E-value=34 Score=22.90 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=14.3
Q ss_pred EEcCCeEEEEEEccCCCCCCeEEEEe
Q psy17058 193 FIVGDRADIQCVLEAGEPSPTQTWIR 218 (471)
Q Consensus 193 v~~g~~~~L~C~~~~~~p~~~v~W~~ 218 (471)
+..|+.++|. +.+...++||+
T Consensus 2 v~~G~N~TL~-----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV-----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe-----CCCCCceEEEE
Confidence 4567777775 44556799984
No 428
>PHA03281 envelope glycoprotein E; Provisional
Probab=59.20 E-value=1.8e+02 Score=28.87 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=32.1
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCceEE-EEEEEEecCC
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEK-VITVAVEHRP 366 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p 366 (471)
..+.|.|.+++.+++|.|+-..+...|.... .+.|.|+..+
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 3458999999999999999888877665544 6778887643
No 429
>PHA03112 IL-18 binding protein; Provisional
Probab=56.09 E-value=48 Score=26.30 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=42.3
Q ss_pred ecCCCcEEEEEEEeec-CCC-eEEEEeCC-ccCCC---------------cccccccCceeEEEEeecCCC-CCeEEEEE
Q psy17058 286 VRPGEPLTLECEATGR-PMP-TVSWVKYI-APFDR---------------NLERDELTSRAVYTIASVRES-DAGQYKCI 346 (471)
Q Consensus 286 ~~~g~~v~l~C~~~g~-p~~-~i~W~~~~-~~~~~---------------~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~ 346 (471)
..+++.+.|+|.+-++ |.- -+.|..++ +.... ............|.+.+++.+ +.-.++|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 4569999999999864 543 58999765 32220 011111233455666776644 33378888
Q ss_pred EEcCCCceEEE
Q psy17058 347 GKNSAGTEEKV 357 (471)
Q Consensus 347 a~n~~g~~~~~ 357 (471)
.....|...++
T Consensus 115 L~D~~~~~k~~ 125 (141)
T PHA03112 115 LMDLDGPIKKS 125 (141)
T ss_pred EecCCchhhHH
Confidence 77666554443
No 430
>PHA03240 envelope glycoprotein M; Provisional
Probab=55.61 E-value=28 Score=29.51 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=37.0
Q ss_pred eEEcCCeEEEEEEccCCCCCCeEEEEe-------CCCC-C--------------------CcCCCceEEeeeceEEEecc
Q psy17058 192 TFIVGDRADIQCVLEAGEPSPTQTWIR-------PDND-G--------------------KFGPDVEVYQELGVLRFNNI 243 (471)
Q Consensus 192 ~v~~g~~~~L~C~~~~~~p~~~v~W~~-------~~~~-~--------------------~~~~~~~~~~~~~~l~i~~~ 243 (471)
.+.+|+.|+|--.- ...|.-.+.|++ .++. . .....+...-.+++|.|-.+
T Consensus 34 t~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 34 TTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred ccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 45678888876543 234666888887 1111 0 01122333344678888888
Q ss_pred CCCCCeEEEEE
Q psy17058 244 ATGDEGKYTCI 254 (471)
Q Consensus 244 ~~~d~G~Y~C~ 254 (471)
...|.|+|.-.
T Consensus 113 n~sd~~nYcr~ 123 (258)
T PHA03240 113 NLSDAGEYCRK 123 (258)
T ss_pred eecCcchhhhc
Confidence 88899888433
No 431
>PHA03112 IL-18 binding protein; Provisional
Probab=54.88 E-value=63 Score=25.69 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=19.4
Q ss_pred ecCCCcEEEEee-C-CCCC-CeEEEEeCC
Q psy17058 103 APEGSQVTIECK-S-NDPS-ATIKWSKDN 128 (471)
Q Consensus 103 v~~G~~v~l~C~-~-~~p~-~~v~W~~~~ 128 (471)
-.+|+++.|+|. - -.|. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 567999999999 3 3354 468899774
No 432
>KOG0200|consensus
Probab=52.70 E-value=1.1e+02 Score=31.69 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=66.1
Q ss_pred eceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE-EEeC-CceeeCCCccEEecCCCcEEEEEEEeecCCCeEEEEeCC
Q psy17058 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH-VLTL-PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI 312 (471)
Q Consensus 235 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~-V~~~-p~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~W~~~~ 312 (471)
...+.+..+...+.|.|+|.+.+ ......+. .... +.+............+..+.+ +...+.+.+.|....
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 84 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN----INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNL 84 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec----CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeee
Confidence 55678888899999999999988 11122222 1111 111111122223445555555 333345677787654
Q ss_pred ccCC----C-------------cccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy17058 313 APFD----R-------------NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361 (471)
Q Consensus 313 ~~~~----~-------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 361 (471)
.... . ............+.+.++...+.|.|.|...+..+.......+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (609)
T KOG0200|consen 85 EIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLE 150 (609)
T ss_pred cccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEEe
Confidence 3210 0 00000123556788999999999999999877444443333333
No 433
>PF15096 G6B: G6B family
Probab=52.49 E-value=32 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.407 Sum_probs=0.0
Q ss_pred cCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCCcc----------cCcEEEEcCCCC---------------------CC
Q psy17058 104 PEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI----------AGETLIINGITK---------------------AD 151 (471)
Q Consensus 104 ~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~~~----------~~~~L~i~~v~~---------------------~D 151 (471)
..|+.|.|.|. .++| +.|-....-..-.... ..++.++..++. .|
T Consensus 9 rPGDRVnlSCvGVs~p---~RWaWAPsFPaCkGLskGRRPilWASssgtpTv~p~~pFaGRLR~ld~GIrrLELLLs~GD 85 (224)
T PF15096_consen 9 RPGDRVNLSCVGVSHP---IRWAWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFAGRLRSLDPGIRRLELLLSAGD 85 (224)
T ss_pred CCCCeeeeeeccCCCc---ceeeeccCCccccccccCCcceEEecCCCCCCCCcccccchhhhccchhHHHHHHHhhcCC
Q ss_pred CeEEEEEEEecCCceeeeeEEEEE
Q psy17058 152 EGVYICSIQNAQGNVFQDYASIQV 175 (471)
Q Consensus 152 ~G~Y~C~~~~~~~~~~~~~~~l~v 175 (471)
+|+|.|.......+ ...++|
T Consensus 86 SGTFfCkGr~e~ES----RT~LhV 105 (224)
T PF15096_consen 86 SGTFFCKGRQEEES----RTVLHV 105 (224)
T ss_pred ccceEecCcccccc----eeeeee
No 434
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=48.20 E-value=16 Score=35.89 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=24.5
Q ss_pred eEEEEEEccCCCCCCeEEEEeCCCCCCc--CCCceEEeeeceEEEeccCCCCC-eEEEEEEE--cCCC-ceEEEEEEEEE
Q psy17058 198 RADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRFNNIATGDE-GKYTCIAE--NSAG-KEVMNAYIHVL 271 (471)
Q Consensus 198 ~~~L~C~~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~--~~~~-~~~~~~~l~V~ 271 (471)
.+.|.|.. .....+.|......... ..... ......|.|.......+ -.|...++ +..+ .....+.|.|.
T Consensus 2 ~~~~~C~~---~~~~~y~W~~~~~~~~~~~~~~~~-~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~ 77 (440)
T PF02010_consen 2 HVSLNCND---ASTVTYNWTVFSGPSNSIVQDMDN-SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVE 77 (440)
T ss_dssp -----------------BEEEEES-TT-EEESTTT---SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE
T ss_pred Cccccccc---ccceEEEEEEEecCCcCccccccc-cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEe
Confidence 35678843 34578899864332100 00000 11235678887665322 24566666 2222 24555667776
Q ss_pred eCCceeeCCC-ccEEecCCCcEEEEEEEeecC-------CCeEEEEeCCccCC-C-----cccccccCceeEEEEeecCC
Q psy17058 272 TLPAVTITPS-EYVSVRPGEPLTLECEATGRP-------MPTVSWVKYIAPFD-R-----NLERDELTSRAVYTIASVRE 337 (471)
Q Consensus 272 ~~p~~~~~~~-~~~~~~~g~~v~l~C~~~g~p-------~~~i~W~~~~~~~~-~-----~~~~~~~~~~~~l~i~~~~~ 337 (471)
..|....... ....+..++.+.|.....-.| ..++.|......-. . ............+.|.....
T Consensus 78 ~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l 157 (440)
T PF02010_consen 78 PSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTL 157 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHc
Confidence 5443332221 112333345677776543233 13677876433322 0 01111233445666654443
Q ss_pred CCCeEEEEEEE--cCCC-ceEEEEEEEEec
Q psy17058 338 SDAGQYKCIGK--NSAG-TEEKVITVAVEH 364 (471)
Q Consensus 338 ~d~G~Y~C~a~--n~~g-~~~~~~~l~V~~ 364 (471)
.....|...+. ...+ .......+.+..
T Consensus 158 ~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~ 187 (440)
T PF02010_consen 158 SPGSTYTFTLTVSKGSRSSSSASQTVTVVS 187 (440)
T ss_dssp ------------------------------
T ss_pred CCCceEEEEEEEEeCCCCceeeEEEEEecc
Confidence 33223555444 4443 334445555543
No 435
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.83 E-value=19 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=0.0
Q ss_pred ceeEEEEeecCCCCCeEEEEEEEcCCCce-EEEEEEEEecCC
Q psy17058 326 SRAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRP 366 (471)
Q Consensus 326 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p 366 (471)
..+.|.|.+++.+|+|.|+-...+..+.. ...+.|.|....
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~ 128 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPA 128 (439)
T ss_dssp ------------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCC
Confidence 34679999999999999999999877655 344677777643
No 436
>PHA03189 UL14 tegument protein; Provisional
Probab=42.72 E-value=2.2e+02 Score=26.01 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=17.6
Q ss_pred ecCCCCCeEEEEEEEcCC-CceEEEEE
Q psy17058 334 SVRESDAGQYKCIGKNSA-GTEEKVIT 359 (471)
Q Consensus 334 ~~~~~d~G~Y~C~a~n~~-g~~~~~~~ 359 (471)
++..+.+|.|.|...|.. |.....+.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEee
Confidence 345668899999999974 43444433
No 437
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=37.54 E-value=5e+02 Score=27.07 Aligned_cols=287 Identities=14% Similarity=0.158 Sum_probs=143.2
Q ss_pred ecCCCcEEEEee---CCCCCCeEEEEeC--CCCCCCC-CcccCcEEEEcCCCCCCCeEEE--EEEEecCCc---eeeeeE
Q psy17058 103 APEGSQVTIECK---SNDPSATIKWSKD--NQEQLPP-NMIAGETLIINGITKADEGVYI--CSIQNAQGN---VFQDYA 171 (471)
Q Consensus 103 v~~G~~v~l~C~---~~~p~~~v~W~~~--~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~--C~~~~~~~~---~~~~~~ 171 (471)
+..|+.+.|.-. .+....-+...+. +|..... .......+.. .+..+|.|. |.+.+.... ......
T Consensus 203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y---~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l 279 (667)
T PRK14081 203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVSY---KEKKSGDYKLLCLVKDMYSNNEFDDRAVL 279 (667)
T ss_pred eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEEE---EeCCCccEEEEEEEeccCcccccccceEE
Confidence 555888888844 3333334444442 1221111 1112333332 356889884 555543322 122233
Q ss_pred EEEEeeccCCeee-ecCCCceeEEcCCeEEEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeE
Q psy17058 172 SIQVDKREMPRIR-IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK 250 (471)
Q Consensus 172 ~l~v~~~~~p~~~-~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 250 (471)
...|....++.+. +..........|+.+.|...+.+|. ...++..-.|..... ..+ .....+.. .+..+|.
T Consensus 280 ~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~-~llYrf~I~G~~~e~-~~Y---~~~n~~~w---~P~~~G~ 351 (667)
T PRK14081 280 VYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGK-ELLYRFIIKGKESED-SGY---IRNNIYTW---KPKIAGK 351 (667)
T ss_pred EEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCC-ceEEEEEECCcEEee-ccc---cccceEEE---eeCCCce
Confidence 3444333333321 1111122356899999999995544 445555444443211 111 11222332 3346899
Q ss_pred EEEEEEcC--CC----ceEEEEEEEEEeC---Cc-ee-eCCCccEEecCCCcEEEEEEEeecCCCeEE-EE-eCCccCCC
Q psy17058 251 YTCIAENS--AG----KEVMNAYIHVLTL---PA-VT-ITPSEYVSVRPGEPLTLECEATGRPMPTVS-WV-KYIAPFDR 317 (471)
Q Consensus 251 Y~C~~~~~--~~----~~~~~~~l~V~~~---p~-~~-~~~~~~~~~~~g~~v~l~C~~~g~p~~~i~-W~-~~~~~~~~ 317 (471)
|.-.+.-. .. .....+.+.|... |. +. +..........|+.+.+.+.+.|.-...+. |. ++|..+..
T Consensus 352 Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~ 431 (667)
T PRK14081 352 YSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK 431 (667)
T ss_pred EEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE
Confidence 98877532 11 1234455665543 32 11 111112356679999999999875444433 33 34544321
Q ss_pred cccccccCceeEEEEeecCCCCCeEEEEEEE--cCCCc----eEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCC
Q psy17058 318 NLERDELTSRAVYTIASVRESDAGQYKCIGK--NSAGT----EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391 (471)
Q Consensus 318 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~ 391 (471)
. .......+.+ .+.-+|.|+..+. +.... ....+.+.|...
T Consensus 432 ~----~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~-------------------------- 478 (667)
T PRK14081 432 I----DYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEY-------------------------- 478 (667)
T ss_pred e----ecccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEecc--------------------------
Confidence 1 1222333333 3467899997665 33332 245677888764
Q ss_pred CCCceEEEcCCcceEEeeecCCe-eE--EcCCeeeeeCCCeEEEEEEecccCCceEEE--ecCCCCC
Q psy17058 392 EEGEYVYAVGSNASISCSVEPPR-IT--LRPVRQTVKPGDIANIRCSAIGATPISIRW--QPLQGYF 453 (471)
Q Consensus 392 ~~~~~~~~~~~~~~y~c~~~~p~-~~--~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W--~~~g~~l 453 (471)
.|. +. +.+.......|+.+++.|.+++.-...+.. +.||.-+
T Consensus 479 --------------------~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v 525 (667)
T PRK14081 479 --------------------IPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKV 525 (667)
T ss_pred --------------------CceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEE
Confidence 232 32 234345577899999999998754443332 3455443
No 438
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=35.88 E-value=1.7e+02 Score=24.01 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.0
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 138 AGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 138 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
.+--|.|.+.+.+|+|.|.-.+.-....
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCC
Confidence 4557999999999999999998765443
No 439
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.23 E-value=1.9e+02 Score=20.69 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=34.6
Q ss_pred CCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 106 G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
...+.|.+..+. ..+.||.+ +..+... .....+.+.. ...|.|+-.+.+..|.
T Consensus 31 ~~~l~l~a~~~~--~~~~W~vd-g~~~g~~-~~~~~~~~~~---~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGGR--GPVYWFVD-GEPLGTT-QPGHQLFWQP---DRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCCC--CcEEEEEC-CEEcccC-CCCCeEEeCC---CCCeeEEEEEEcCCCC
Confidence 456677776443 38999999 7766222 2233444433 5679999999887776
No 440
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=31.56 E-value=1.7e+02 Score=19.81 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=36.3
Q ss_pred eEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 305 ~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
...|+++++.............-.+..-........|..+..+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4679998887653322111222233444445557899999999999888766655554
No 441
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=30.12 E-value=1.9e+02 Score=19.90 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCCcEEEEEEEee-cCCCeEEEEeCCccCCCcccccccCceeEEEEeecCCCCCeEEEE--EEEcCCCceEEEEEEEE
Q psy17058 288 PGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC--IGKNSAGTEEKVITVAV 362 (471)
Q Consensus 288 ~g~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V 362 (471)
.+..+.|.....+ .....+.|...+.... ..... .......|.|+- .+.|..|..+..+.+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~-------~~~~~-----~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSS-------TGPTV-----THTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCcc-------CCCCE-----EEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 6778888877654 2344788976544211 01111 223446777764 45688886666666655
No 442
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=29.81 E-value=1.8e+02 Score=19.63 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=25.8
Q ss_pred EEEEEccCCCCCCeEEEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEEEEEEE
Q psy17058 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256 (471)
Q Consensus 200 ~L~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 256 (471)
+|.|.. +....+.||-||..+-- +. ..++.+..+ .++|+|+-.
T Consensus 2 tltC~s---~~sLPiswYcN~TRLlR-----lt--~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPS---NASLPISWYCNGTRLLR-----LT--QQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCC---CCCCcccEEECCceeee-----ec--CCeEeeeee----eEEeeecCC
Confidence 578865 33445899999876211 11 234555443 578888764
No 443
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=25.95 E-value=7.8e+02 Score=25.73 Aligned_cols=280 Identities=11% Similarity=0.157 Sum_probs=147.5
Q ss_pred ecCCCcEEEEee-CCCCCCeEEEEeCCCCCCCCC-cccCcEEEEcCCCCCCCeEEEEEEEecCCc-----eeeeeEEEEE
Q psy17058 103 APEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-MIAGETLIINGITKADEGVYICSIQNAQGN-----VFQDYASIQV 175 (471)
Q Consensus 103 v~~G~~v~l~C~-~~~p~~~v~W~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~-----~~~~~~~l~v 175 (471)
...|+.+.|... .|.-...+...-. |...... ......+.. ++..+|.|.-.+.-.... .......+.+
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~-G~~~e~~~Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i 377 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIK-GKESEDSGYIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTI 377 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEEC-CcEEeeccccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEE
Confidence 467999999998 5444445554444 3333211 112333333 344689999887643322 1222333444
Q ss_pred eec-cCCee--eecCCCceeEEcCCeEEEEEEccCCCCCCeE-EEEeCCCCCCcCCCceEEeeeceEEEeccCCCCCeEE
Q psy17058 176 DKR-EMPRI--RIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251 (471)
Q Consensus 176 ~~~-~~p~~--~~~~~~~~~v~~g~~~~L~C~~~~~~p~~~v-~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 251 (471)
... ..|.. .+.......+..|+.+.+.|.+.++. ...+ .|.+.++....... ......+.+. +.-+|.|
T Consensus 378 ~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~-~~lY~f~ik~ng~~ve~~~---Y~~~~~~~f~---P~~~G~Y 450 (667)
T PRK14081 378 EEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGT-NLRYSFIIKKDGKEEEKID---YGKNNWVNFI---PEEKGNY 450 (667)
T ss_pred cccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCC-eEEEEEEEEECCEEEEEee---cccccEEEEE---ECCCeeE
Confidence 321 12321 11122223567899999999995554 3433 33333332111111 1112233333 3668999
Q ss_pred EEEEEc--CCC----ceEEEEEEEEEe-CCc-ee--eCCCccEEecCCCcEEEEEEEeecCCCe--EEEEeCCccCCCcc
Q psy17058 252 TCIAEN--SAG----KEVMNAYIHVLT-LPA-VT--ITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVKYIAPFDRNL 319 (471)
Q Consensus 252 ~C~~~~--~~~----~~~~~~~l~V~~-~p~-~~--~~~~~~~~~~~g~~v~l~C~~~g~p~~~--i~W~~~~~~~~~~~ 319 (471)
+-.+.- ... .....+.+.|.. .|. +. +.+. ......|+.+++.|.+.+.-... +.-+.+|.....
T Consensus 451 ~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~-~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~-- 527 (667)
T PRK14081 451 ELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPV-KEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEE-- 527 (667)
T ss_pred EEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecc-cccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEE--
Confidence 987753 222 235567788875 443 22 2222 23467899999999998754443 333344444311
Q ss_pred cccccCceeEEEEeecCCCCCeEEEEEEE--cCCC----ceEEEEEEEEecCCCCCCCCCCCCCccccCCCcccCCCCCC
Q psy17058 320 ERDELTSRAVYTIASVRESDAGQYKCIGK--NSAG----TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEE 393 (471)
Q Consensus 320 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g----~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~ 393 (471)
........+.+. +.-+|.|+..|- |... ...+.+.+.|+...
T Consensus 528 --t~Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~--------------------------- 575 (667)
T PRK14081 528 --TDYIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREAL--------------------------- 575 (667)
T ss_pred --eeccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCC---------------------------
Confidence 112223333333 556899997665 3332 22456788888652
Q ss_pred CceEEEcCCcceEEeeecCCe-eEEcCCeeeeeCCCeEEEEEEecccCCceEEE
Q psy17058 394 GEYVYAVGSNASISCSVEPPR-ITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446 (471)
Q Consensus 394 ~~~~~~~~~~~~y~c~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 446 (471)
|.. ..+.........|+.++++..+.|--...++.
T Consensus 576 ------------------pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v~Yef 611 (667)
T PRK14081 576 ------------------PITNTKIKTSKKKFKCNEEVTFSVKSEGGKDVCYEF 611 (667)
T ss_pred ------------------CceeeEEEeecceEEcCCeEEEEEEccCCCcEEEEE
Confidence 111 22233446778899999998888765555543
No 444
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=23.35 E-value=2.6e+02 Score=19.24 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=29.1
Q ss_pred cCCceeecCCCcEEEEeeCCCCCCeEEEEeCCCCCCCCCcccCcEEEEcCCCCCCCeEEEEEEEecCCc
Q psy17058 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGN 165 (471)
Q Consensus 97 ~p~~~~v~~G~~v~l~C~~~~p~~~v~W~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 165 (471)
.|..-....+..|+|.|. .+...+.+..+|..+-. .+.+.-..+...+.+.+.+.+....+.
T Consensus 6 sp~~G~~~~~~~v~l~~~--~~~~~I~YT~DGs~Pt~-----~s~~Y~~Pi~i~~~~~vka~a~~~~g~ 67 (75)
T PF03174_consen 6 SPPSGTYDEGQTVTLSSD--TPGATIYYTLDGSEPTK-----SSPLYTGPITIPESGTVKARAFDNGGN 67 (75)
T ss_dssp ----EEEEETTEEEEE-S--STTSEEEEESSSSSS---------EE--CCC--B--S--EEEEE-TTS-
T ss_pred eCCCCcEecCeEEEEEeC--CCCCEEEEEcCCCcccc-----cCcccCcCEEeCCCcEEEEEEEcCCCC
Confidence 344455666889999994 34457877777444321 234555567777788888888766544
No 445
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.23 E-value=2.5e+02 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.2
Q ss_pred CceeEEEEeecCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy17058 325 TSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362 (471)
Q Consensus 325 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 362 (471)
...-.|.|.+.+.+|+|.|.-+++-...+...-+.+.+
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 34556999999999999999999876555544444433
No 446
>KOG3611|consensus
Probab=20.81 E-value=1.6e+02 Score=31.04 Aligned_cols=56 Identities=16% Similarity=0.423 Sum_probs=35.9
Q ss_pred cEEEEeeCCCCCCeEEEEeCCCCC-----CCCC--cc--cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy17058 108 QVTIECKSNDPSATIKWSKDNQEQ-----LPPN--MI--AGETLIINGITKADEGVYICSIQNAQ 163 (471)
Q Consensus 108 ~v~l~C~~~~p~~~v~W~~~~~~~-----~~~~--~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~ 163 (471)
...|.|........+.|+...... .... .. ..+.+.+..++..|+|.|.|.+....
T Consensus 571 ~~~l~c~~~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAPVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cceeeccccccccceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 578999844444558898542221 1111 11 23458888999999999999987543
Done!