RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17058
(471 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 205 bits (524), Expect = 4e-60
Identities = 78/366 (21%), Positives = 127/366 (34%), Gaps = 65/366 (17%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLII 144
+ P G T +C I W+KDN+E + P + TL +
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTATLTV 257
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
+TK D G Y C N G +D S Q+ +E PR S+ + +C
Sbjct: 258 LKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKE 262
+ G P W + + + + + + VL N++ D G YTC A N+AG
Sbjct: 315 IG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373
Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD 322
+ + V P P V G + LECE G P VSW K +
Sbjct: 374 SSSTSLKVKEPPVFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 432
Query: 323 ELTSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADIL 380
++ + + I +V +D G+Y+C N G++ V ++ ++
Sbjct: 433 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK----------------- 475
Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGAT 440
PPR + + G+ ++ + GA
Sbjct: 476 ------------------------------APPRFVKKLSDISTVVGEEVQLQATIEGAE 505
Query: 441 PISIRW 446
PIS+ W
Sbjct: 506 PISVAW 511
Score = 195 bits (498), Expect = 2e-56
Identities = 73/369 (19%), Positives = 119/369 (32%), Gaps = 66/369 (17%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-------MIAGETLII 144
+ G V EC+ + + W KD + L + + TL I
Sbjct: 103 SFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL-LKDDANLQTSFIHNVATLQI 161
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE-MPRIRIHPNASQTFIVGDRADIQC 203
++ G Y CS N G A + + + E P + P S +G+ +C
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKC 219
Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGK 261
+ G TW + + + + G + ++ L + GD G+YTC A N AGK
Sbjct: 220 HVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 262 EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRN 318
+ +A + V P V+ E EC+ G P V W K I +
Sbjct: 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338
Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
+ S AV + ++ D+G Y C N+AG+ ++ V+
Sbjct: 339 -RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--------------- 382
Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
EPP +P G ++ C G
Sbjct: 383 --------------------------------EPPVFRKKPHPVETLKGADVHLECELQG 410
Query: 439 ATPISIRWQ 447
P + W
Sbjct: 411 TPPFQVSWH 419
Score = 191 bits (488), Expect = 5e-55
Identities = 63/282 (22%), Positives = 110/282 (39%), Gaps = 20/282 (7%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLIIN 145
++ + + ECK P + W KD ++ + + + L +
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET-EIQESSKFRMSFVESVAVLEMY 352
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
++ D G Y C NA G +S + +E P R P + G ++C L
Sbjct: 353 NLSVEDSGDYTCEAHNAAG---SASSSTSLKVKEPPVFRKKP-HPVETLKGADVHLECEL 408
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCIAENSAGKEV 263
+ G P +W + + + G ++ E L + N+ + D G+Y C A N G +
Sbjct: 409 Q-GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLE 320
I + P S+ +S GE + L+ G +V+W K I N+
Sbjct: 468 CVGSITLKAPPRFVKKLSD-ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW 526
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ A + ++AG+Y C KN AGT+E T++V
Sbjct: 527 ISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 181 bits (461), Expect = 4e-51
Identities = 76/392 (19%), Positives = 127/392 (32%), Gaps = 75/392 (19%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-------IAGETLIINGITK 149
A G +T++CK P I W K++ + L +L+IN +
Sbjct: 12 LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTK-LRSAPAYKMQFKNNVASLVINKVDH 70
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAG 208
+D G Y C +N+ G V A + + +R++ P +G +C + G
Sbjct: 71 SDVGEYTCKAENSVGAV-ASSAVLVIKERKLPPSFARKL-KDVHETLGFPVAFECRIN-G 127
Query: 209 EPSPTQTWIRPDNDGKFGPDVEVY--QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
+W + K +++ + L+ G+Y C A N G +A
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSA 187
Query: 267 YIHVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLER 321
+ + P + P V + GE T +C TG ++W K N +
Sbjct: 188 KLTLSEHEVPPFFDLKPVS-VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
+ + A T+ V + DAGQY C N AG + + V+
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------ 288
Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGAT 440
EPPR + + VK + C G+
Sbjct: 289 -----------------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 319
Query: 441 PISIRW----QPLQ--GYFPSHVVEYNGELRL 466
I + W +Q F VE L +
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEM 351
Score = 146 bits (369), Expect = 2e-38
Identities = 61/299 (20%), Positives = 97/299 (32%), Gaps = 60/299 (20%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVL 238
P +G+ +QC ++ G P W + + P ++ + + L
Sbjct: 6 PYFIEPLE-HVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV---LTLPAVTITPSEYVSVRPGEPLTLE 295
N + D G+YTC AENS G +A + + P+ + V G P+ E
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD-VHETLGFPVAFE 122
Query: 296 CEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
C G VSW K + D NL+ + + A I +S GQY C N GT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 354 EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPP 413
+ + PP
Sbjct: 183 ASSSAKLTLSEHE--------------------------------------------VPP 198
Query: 414 RITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ--GYFPSHVVEYNGELRL 466
L+PV + G+ +C G PI I W + ++ G + +VE L +
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Score = 116 bits (292), Expect = 4e-28
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)
Query: 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------AGETLIINGI 147
+ P +G+ V +EC+ P + W KD +E ++ I +
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
AD G Y C N G D + + PR + + +VG+ +Q +E
Sbjct: 448 DSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKLS-DISTVVGEEVQLQATIE- 502
Query: 208 GEPSPTQTWIRPDNDGKFGPD---VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
G + W + + D + + + L+F+ + GKYTC +N AG +
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Query: 265 NAYIHVL 271
A + VL
Sbjct: 563 FATLSVL 569
Score = 86.0 bits (213), Expect = 4e-18
Identities = 34/175 (19%), Positives = 51/175 (29%), Gaps = 46/175 (26%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVYT 331
P I P E+V GEP+TL+C+ G P ++W K + + A
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
I V SD G+Y C +NS G + ++ R
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK------------------------- 99
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
PP + G C G+ P+ + W
Sbjct: 100 -------------------LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Score = 42.1 bits (99), Expect = 4e-04
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
++EPP G+ ++C G I I W
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAW 39
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 190 bits (484), Expect = 3e-57
Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 23/289 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM---------IAGET 141
+V + P Q G C+ + I W N E+L PN T
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
L I D G+Y C + G + ++++ + + P Q F G+ A I
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI--FQKLMFKNAPT-PQEFKEGEDAVI 120
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
C + PT W D DV L+ I DEG Y C A
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 261 KEVM--NAYIHVLTLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAP 314
E+ + + V P V S + G+ +TL C+A G P PT+SW K I
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 315 FDRNLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ + E+ + + TI +V ++D +Y CI +N AG ++ I + V
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 138 bits (348), Expect = 2e-37
Identities = 46/278 (16%), Positives = 76/278 (27%), Gaps = 60/278 (21%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQEL 235
++ I P + VG+ C + +W P+ + V +
Sbjct: 3 LQVDIVP-SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
L N D G Y C+ G + + + P+ + GE +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAVI 120
Query: 295 ECEATGRPMPTVSWVKYIAPFD-RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
C+ PT+ W + R + S I ++++D G Y+C G+ A
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 354 E--EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE 411
E K I V V
Sbjct: 181 EINFKDIQVIVN-----------------------------------------------V 193
Query: 412 PPRITLRP--VRQTVKPGDIANIRCSAIGATPISIRWQ 447
PP + R V T G + C A G ++ W
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWT 231
Score = 125 bits (315), Expect = 6e-33
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGI 147
+ P Q EG I C TI W ++ + +++ L I GI
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGI 162
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLE 206
K DEG Y C + ++ IQV P ++ + + T +G + C +
Sbjct: 163 KKTDEGTYRCEGRILARGE-INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 207 AGEPSPTQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
G P PT +W + N+ + + L N+ DE +Y CIAEN AG++
Sbjct: 222 -GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280
Query: 263 VMNAYIHVL 271
+ ++ V
Sbjct: 281 DASIHLKVF 289
Score = 78.4 bits (193), Expect = 3e-16
Identities = 33/182 (18%), Positives = 50/182 (27%), Gaps = 55/182 (30%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVK-----YIAPFDRNLERDELTS 326
+ V I PS+ + GE C+ G +SW R
Sbjct: 2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRPEYGPISPRPGADILPDGDE 385
+ TI + DAG YKC+ GT+ E + V +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------------------- 98
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
+ P Q K G+ A I C + + P +I
Sbjct: 99 -------------------------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133
Query: 446 WQ 447
W+
Sbjct: 134 WK 135
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 186 bits (473), Expect = 1e-55
Identities = 68/284 (23%), Positives = 105/284 (36%), Gaps = 20/284 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI-------AGETLII 144
+ P G T +C I W+KDN+E + P TL +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLVENTATLTV 65
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
+TK D G Y C N G +D S Q+ +E PR S+ + +C
Sbjct: 66 LKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKE 262
+ G P W + + + + + VL N++ D G YTC A N+AG
Sbjct: 123 IG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNL 319
+ + V P P V G + LECE G P VSW K + +
Sbjct: 182 SSSTSLKVKEPPVFRKKP-HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS-GKKY 239
Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ I +V +D G+Y+C N G+ V ++ ++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 151 bits (383), Expect = 1e-42
Identities = 53/270 (19%), Positives = 86/270 (31%), Gaps = 53/270 (19%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVL 238
P + P S +G+ +C + G TW + + + + G + ++ L
Sbjct: 6 PFFDLKP-VSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
+ GD G+YTC A N AGK+ +A + V P V+ E EC+
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 299 TGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
G P V W K + S AV + ++ D+G Y C N+AG+
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183
Query: 357 VITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRIT 416
++ V+ EPP
Sbjct: 184 STSLKVK-----------------------------------------------EPPVFR 196
Query: 417 LRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+P G ++ C G P + W
Sbjct: 197 KKPHPVETLKGADVHLECELQGTPPFQVSW 226
Score = 84.8 bits (210), Expect = 1e-18
Identities = 42/203 (20%), Positives = 62/203 (30%), Gaps = 59/203 (29%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P + P V + GE T +C TG ++W K I P N + + + A
Sbjct: 6 PFFDLKPVS-VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-GGNYKMTLVENTATL 63
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
T+ V + DAGQY C N AG + + V+
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--------------------------- 96
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRP-VRQTVKPGDIANIRCSAIGATPISIRW--- 446
EPPR + + VK + C G+ I + W
Sbjct: 97 --------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 447 -QPLQ--GYFPSHVVEYNGELRL 466
+Q F VE L +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEM 159
Score = 41.3 bits (97), Expect = 4e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ--GYFPSHVVEYNG 462
++ PP L+PV + G+ +C G PI I W + ++ G + +VE
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 463 ELRL 466
L +
Sbjct: 62 TLTV 65
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 195 bits (498), Expect = 4e-55
Identities = 76/391 (19%), Positives = 131/391 (33%), Gaps = 71/391 (18%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
++ P Q+ G C+ +P T+ W KD + L I + K D
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----SVLRIESVKKED 400
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
+G+Y C ++N + + + A +++ R P + +T G ++CV G P+
Sbjct: 401 KGMYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPT 458
Query: 212 PTQTWIRPD----NDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
P +W N+ ++ V + L ++ D G Y CIA++ G
Sbjct: 459 PEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH 518
Query: 265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDEL 324
+A ++V LP I E ++ GE L + C G P+ ++ W + N + ++
Sbjct: 519 SAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN-RKQKV 575
Query: 325 TSRAVYTIASV-RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDG 383
I +V R SD Y C+ KN G +
Sbjct: 576 FPNGTLIIENVERNSDQATYTCVAKNQEGYSAR--------------------------- 608
Query: 384 DEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPI 442
+ + V P I + G + CS G P+
Sbjct: 609 ------------------GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPL 650
Query: 443 SIRW-------QPLQGYFPSHVVEYNGELRL 466
+I W G S V L +
Sbjct: 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681
Score = 189 bits (482), Expect = 7e-53
Identities = 73/372 (19%), Positives = 127/372 (34%), Gaps = 72/372 (19%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE-----------QLPPNMIAGE 140
++ ++++ G V ++C + +P+ I W D ++ + N
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVS 490
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
L I + D G+Y C ++ G S +++ +P IR + + G+
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAE---HSAKLNVYGLPYIRQMEK--KAIVAGETLI 545
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA-TGDEGKYTCIAENSA 259
+ C + AG P + W R + +V+ G L N+ D+ YTC+A+N
Sbjct: 546 VTCPV-AGYPIDSIVWERDNRALPINRKQKVFPN-GTLIIENVERNSDQATYTCVAKNQE 603
Query: 260 GKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK---YIAP 314
G + + V+ LP + E + G+ LTL C G +P + W I+
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE 663
Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
+V TI +V S AG + C +N AG ++ + V
Sbjct: 664 DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----------- 712
Query: 375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRC 434
PPR L P + G A + C
Sbjct: 713 ------------------------------------VPPRWILEPTDKAFAQGSDAKVEC 736
Query: 435 SAIGATPISIRW 446
A G + W
Sbjct: 737 KADGFPKPQVTW 748
Score = 184 bits (469), Expect = 4e-51
Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 20/288 (6%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKA 150
+++ G + + C + P +I W +DN+ LP N + TLII + +
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRA-LPINRKQKVFPNGTLIIENVERN 589
Query: 151 -DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
D+ Y C +N +G + +QV +PRI VG + C + G
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQV--MVLPRIIPFAFEEGPAQVGQYLTLHCSVP-GG 646
Query: 210 PSPTQ-TWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
P W + + VL + G +TC A N AG +
Sbjct: 647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT 325
++V P + P++ + G +EC+A G P P V+W K + + + +
Sbjct: 707 TPLNVYVPPRWILEPTD-KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKS 765
Query: 326 SRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
+ ++++++ G Y C N G+ + + +
Sbjct: 766 DNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813
Score = 182 bits (462), Expect = 3e-50
Identities = 74/383 (19%), Positives = 116/383 (30%), Gaps = 84/383 (21%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMIAGE------ 140
A + ++ G+ I+C D + W D +E P
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 141 --TLIINGITKAD-EGVYICSIQNAQGNVFQDYASIQVDKREMPR-------IRIHPNAS 190
L I + D Y C ++ + A+ P + +
Sbjct: 198 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDM 257
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATG 246
+T+ + C + G P P W + V V Q G L +
Sbjct: 258 KTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
D GKY C+ NS G E + + V + I P +V G P C+ TG P+ TV
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQYTGNPIKTV 375
Query: 307 SWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
SW+K I + L I SV++ D G Y+C +N + E + +
Sbjct: 376 SWMKDGKAIGHSESVL-----------RIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424
Query: 364 HRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT 423
R +PP I +T
Sbjct: 425 GRF--------------------------------------------DPPVIRQAFQEET 440
Query: 424 VKPGDIANIRCSAIGATPISIRW 446
++PG ++C A G I W
Sbjct: 441 MEPGPSVFLKCVAGGNPTPEISW 463
Score = 180 bits (458), Expect = 1e-49
Identities = 81/392 (20%), Positives = 123/392 (31%), Gaps = 86/392 (21%)
Query: 98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI--------AGETLIINGIT 148
++ S + + C + P +W K + + TLII
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
D G Y+C + N+ G + + +I P +QT G A C G
Sbjct: 315 VEDSGKYLCVVNNSVG---GESVETVLTVTAPLSAKIDPP-TQTVDFGRPAVFTCQYT-G 369
Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
P T +W++ DGK + VLR ++ D+G Y C N +A +
Sbjct: 370 NPIKTVSWMK---DGK-----AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Query: 269 HVLTL---PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERD 322
+ P + E + PG + L+C A G P P +SW IA DR
Sbjct: 422 KLGGRFDPPVIRQAFQEET-MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ 480
Query: 323 ELTSRAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
+T I SV +D G YKCI K+ G E + V
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY--------------- 525
Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
P I + ++ + G+ + C G
Sbjct: 526 --------------------------------GLPYIR-QMEKKAIVAGETLIVTCPVAG 552
Query: 439 ATPISIRW----QPLQGYFPSHVVEYNGELRL 466
SI W + L V NG L +
Sbjct: 553 YPIDSIVWERDNRALPIN-RKQKVFPNGTLII 583
Score = 165 bits (419), Expect = 2e-44
Identities = 60/382 (15%), Positives = 106/382 (27%), Gaps = 83/382 (21%)
Query: 98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKAD 151
+ + IECK++ +P I W + + + + + L+ D
Sbjct: 46 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105
Query: 152 ------EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
VY C +N G++ ++ N + I G+ A I+C++
Sbjct: 106 YRQEVHAQVYACLARNQFGSIISRDVHVRA--VVAQYYEADVN-KEHVIRGNSAVIKCLI 162
Query: 206 EA--GEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATGD-EGKYTCIAENS 258
+ + +W + + F + G L + D Y C ++
Sbjct: 163 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 222
Query: 259 AGKEVMNAYIHVLTL----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
E + + V++ + + + L C A G P+P W
Sbjct: 223 LTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW 282
Query: 309 VKYIAPFDRN----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
K+I R L I D+G+Y C+ NS G E + V
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT- 341
Query: 365 RPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTV 424
P + P QTV
Sbjct: 342 ----------------------------------------------APLSAKIDPPTQTV 355
Query: 425 KPGDIANIRCSAIGATPISIRW 446
G A C G ++ W
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSW 377
Score = 132 bits (333), Expect = 3e-33
Identities = 50/323 (15%), Positives = 84/323 (26%), Gaps = 59/323 (18%)
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
+ + ++ A G+ A+ ++ P P F A+I
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLA-ANPPDADQKGPVFLKEPTNRIDFSNSTGAEI 59
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGD------EGKYT 252
+C G P P WIR +DG DV +++ G L F D Y
Sbjct: 60 ECKAS-GNPMPEIIWIR--SDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 253 CIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA---TGRPMPTVSW 308
C+A N G + + ++ + ++ V G ++C + VSW
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSW 175
Query: 309 VK----YIAPFDRNLERDELTSRAVYTIASVRESDA-GQYKCIGKNSAGTEEKVITVAVE 363
P + + I V D Y+C K+ E ++
Sbjct: 176 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Query: 364 HRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT 423
S P + +T
Sbjct: 236 LVITEPISSAVP------------------------------------KVVSLAKFDMKT 259
Query: 424 VKPGDIANIRCSAIGATPISIRW 446
+ C A G RW
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRW 282
Score = 60.7 bits (147), Expect = 6e-10
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---------MIAGETL 142
+ P ++ +GS +ECK P + W K + + TL
Sbjct: 716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTL 775
Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
++ I K +EG Y+C N G+ I V
Sbjct: 776 HVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 47.6 bits (113), Expect = 7e-06
Identities = 14/142 (9%), Positives = 26/142 (18%), Gaps = 51/142 (35%)
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
+ + R + + + G++
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDAD-------------------------- 35
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPV-RQTVKPGDIANIRCSAIGATPISIRW--- 446
+ P P R A I C A G I W
Sbjct: 36 -------------------QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS 76
Query: 447 --QPLQGYFPSHVVEYNGELRL 466
+ + +G+L
Sbjct: 77 DGTAVGDVPGLRQISSDGKLVF 98
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 186 bits (473), Expect = 1e-54
Identities = 79/397 (19%), Positives = 123/397 (30%), Gaps = 85/397 (21%)
Query: 98 PRQQSAPEGS---QVTIECKSN-DPSATIKWSKDNQEQLPPN------MIAGETLIINGI 147
P PEGS +VT+ C++ +P AT +W + E L ++AG+ +I N +
Sbjct: 11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTE-LKMGPDSRYRLVAGDLVISNPV 69
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
D G Y C NA+G V AS++ + G C
Sbjct: 70 KAKDAGSYQCVATNARGTVVSREASLRF--GFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
P+ + W+ + D + G L D G Y+C A + +
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187
Query: 266 AYIHVLTL-----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAP 314
+ L P++ G+ +TLEC A G P+P + W K
Sbjct: 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL--- 244
Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
D + L+S + I +V D G Y+C +N G + + +
Sbjct: 245 -DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH----------- 292
Query: 375 PGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRC 434
P G C
Sbjct: 293 ------------------------------------AQPDWLDVITDTEADIGSDLRWSC 316
Query: 435 SAIGATPISIRW----QPLQGYFPSHVVEY-NGELRL 466
A G ++RW QPL + +E GELR
Sbjct: 317 VASGKPRPAVRWLRDGQPLA---SQNRIEVSGGELRF 350
Score = 166 bits (423), Expect = 2e-47
Identities = 59/287 (20%), Positives = 95/287 (33%), Gaps = 32/287 (11%)
Query: 97 TPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
EG V C P+ + +W + P L I
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKR--------EMPRIRIHPNASQTFIVGDRAD 200
+D G Y C + + + S P I+ A + G
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT 226
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
++C G P P W + DG + +L N+ DEG Y C AEN G
Sbjct: 227 LECFAF-GNPVPQIKWRK--LDGSQTSKWLSSE--PLLHIQNVDFEDEGTYECEAENIKG 281
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR 317
++ I + P ++ G L C A+G+P P V W++ +A +R
Sbjct: 282 RDTYQGRIIIHAQPDWLDVITD-TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340
Query: 318 -NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ EL + + D+G Y+C+ +N GT + V+
Sbjct: 341 IEVSGGEL------RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 134 bits (340), Expect = 1e-35
Identities = 53/294 (18%), Positives = 79/294 (26%), Gaps = 45/294 (15%)
Query: 181 PRIRIHPNASQTFIVG---DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
P P A F G ++ + C P T W + K GPD G
Sbjct: 5 PVFEEQP-AHTLFPEGSAEEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 238 LRFNNIATG-DEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
L +N D G Y C+A N+ G V A + L + + V + G +
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 296 CEAT-GRPMPTVSWVK--YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
C P + W+ + + R + IA SD G Y C +
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 353 TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP 412
K + A + P
Sbjct: 183 FITKSVFSKFSQLS-----------------------------------LAAEDARQYAP 207
Query: 413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRL 466
P G + + C A G I+W+ L G S + L +
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHI 261
Score = 123 bits (309), Expect = 2e-31
Identities = 61/286 (21%), Positives = 92/286 (32%), Gaps = 60/286 (20%)
Query: 39 FVSAENHEVTVYEGGDAELKCN-TYYAPG---RWMWLNFYSFL-------------SLII 81
F + E V + EG C+ + P RW+ F +F+ +L I
Sbjct: 103 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI 162
Query: 82 -----------ICLAY------------------------LSPQANEVQVTPRQQSAPEG 106
C A + P A G
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTG 222
Query: 107 SQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGN 165
VT+EC + +P IKW K + Q + + L I + DEG Y C +N +G
Sbjct: 223 QMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG- 281
Query: 166 VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF 225
+D ++ P +G CV G+P P W+R +
Sbjct: 282 --RDTYQGRIIIHAQPDWLDVIT-DTEADIGSDLRWSCVAS-GKPRPAVRWLR--DGQPL 335
Query: 226 GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ G LRF+ + D G Y C+AEN G +A + V
Sbjct: 336 ASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 35.6 bits (82), Expect = 0.033
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 412 PPRITLRPVRQTVK---PGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
P +P + + C A P + RW L+ S G+L
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 182 bits (464), Expect = 3e-53
Identities = 69/398 (17%), Positives = 112/398 (28%), Gaps = 94/398 (23%)
Query: 100 QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN------MIAGETLIINGITKADE 152
E +V + C+ +P I+W + + + ++ G LI N D
Sbjct: 17 FPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTD-VDIGMDFRYSVVDGSLLINNPNKTQDA 75
Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
G Y C N+ G + A +Q + + ++ + G + C
Sbjct: 76 GTYQCIATNSFGTIVSREAKLQF--AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL 133
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
+ WI + V QE G L + D G YTC+ N+ + L
Sbjct: 134 SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 273 L----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----------YI 312
L P + + E V G + LEC A G P+PT+ W +
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
+ L I + ++ DAG Y+C+ +NS G +
Sbjct: 254 HKSNGIL-----------EIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY--------- 293
Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
P V +
Sbjct: 294 --------------------------------------AQPNWVQIINDIHVAMEESVFW 315
Query: 433 RCSAIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
C A G + RW PL + G L +
Sbjct: 316 ECKANGRPKPTYRWLKNGDPLLTR--DRIQIEQGTLNI 351
Score = 168 bits (428), Expect = 5e-48
Identities = 69/283 (24%), Positives = 102/283 (36%), Gaps = 26/283 (9%)
Query: 97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKA 150
T S G + + C + + W + N L I + K+
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS 167
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREM-------PRIRIHPNASQTFIVGDRADIQC 203
D G Y C + N N + R P+I + + G ++C
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227
Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G P PT W R D ++ G+L N D G Y C+AENS GK V
Sbjct: 228 FAL-GNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285
Query: 264 MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NL 319
+ P ++ + V E + EC+A GRP PT W+K + DR +
Sbjct: 286 AKGQLTFYAQPNWVQIIND-IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI 344
Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
E+ L I V SDAG Y+C+ +N G ++V
Sbjct: 345 EQGTL------NITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 129 bits (325), Expect = 2e-33
Identities = 61/294 (20%), Positives = 90/294 (30%), Gaps = 45/294 (15%)
Query: 181 PRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
P P+ + + + C ++ G P P W D G D G L
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVK-GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 239 RFNNIA-TGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
NN T D G Y CIA NS G V A + L VSVR G+ + L C
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 297 EAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
+ +W+ P ++ R IA V +SD G Y C+ N+ +
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK 184
Query: 356 KVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRI 415
+ G + N + EP
Sbjct: 185 VL------------------------------------GPPTPLILRNDGVMGEYEPKIE 208
Query: 416 TLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFP---SHVVEYNGELRL 466
P + G + C A+G +I W+ G + + NG L +
Sbjct: 209 VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEI 262
Score = 122 bits (307), Expect = 5e-31
Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 60/287 (20%)
Query: 38 QFVSAENHEVTVYEGGDAELKCN-TYYAPG---RWMWLNFYSFLS-----------LII- 81
F + V+V G L C ++ W++ + S+ L I
Sbjct: 103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIA 162
Query: 82 ----------ICLAY--------LSPQANEVQVT---------------PRQQSAPEGSQ 108
C+ L P + P A +G+
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTT 222
Query: 109 VTIECKSN-DPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEGVYICSIQNAQG 164
V +EC + +P TI W + + + + + L I + D G Y C +N++G
Sbjct: 223 VKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG 282
Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK 224
++ A Q+ P N + + +C G P PT W++ N
Sbjct: 283 ---KNVAKGQLTFYAQPNWVQIIN-DIHVAMEESVFWECKAN-GRPKPTYRWLK--NGDP 335
Query: 225 FGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ E G L + D G Y C+AEN G +A + V+
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 36.0 bits (83), Expect = 0.022
Identities = 9/61 (14%), Positives = 12/61 (19%), Gaps = 7/61 (11%)
Query: 411 EPPRITLRPVRQTVK---PGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGE 463
P P + C G IRW + +G
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 464 L 464
L
Sbjct: 64 L 64
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 181 bits (462), Expect = 9e-53
Identities = 75/374 (20%), Positives = 115/374 (30%), Gaps = 74/374 (19%)
Query: 96 VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNM------IAGETLIINGI 147
P G V + C S+ IKW KD L M + +L+I I
Sbjct: 26 SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI-LALGMDDRKQQLPNGSLLIQNI 84
Query: 148 T-----KADEGVYICSIQ-NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
K DEG+Y C G++ A + V R S T +GD +
Sbjct: 85 LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV--AGPLRFLSQTE-SITAFMGDTVLL 141
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSA 259
+C + G+P PT W + D P L G L+ + + GD G Y C A N A
Sbjct: 142 KCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200
Query: 260 GKEVMN-AYIHVLTLPAVTITPS-----EYVSVRPGEPLTLECEATGRPMPTVSWVKYIA 313
N A + +L+ P + V G+ LEC +G P P+ +W++
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260
Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
++ L + I++V + D+G Y C+ + V
Sbjct: 261 VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL---------- 310
Query: 374 RPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIR 433
PP P
Sbjct: 311 -------------------------------------VPPWFLNHPSNLYAYESMDIEFE 333
Query: 434 CSAIGATPISIRWQ 447
C+ G ++ W
Sbjct: 334 CAVSGKPVPTVNWM 347
Score = 178 bits (453), Expect = 2e-51
Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 13/278 (4%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPN----MIAGETLIINGIT 148
+A G V ++C+ DP TI W K+ Q +P + ++ L I+ +
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCVL 205
D GVY CS +N + A +++ + ++ I G A ++C +
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
G P P+ TW+R + + L +N+ D G YTC+ +
Sbjct: 246 S-GYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISAS 304
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT 325
A + VL P P + + EC +G+P+PTV+W+K + + ++
Sbjct: 305 AELTVLVPPWFLNHP-SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-DYFQIV 362
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ I V +SD G Y+C+ +N AG + + V
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 141 bits (356), Expect = 1e-37
Identities = 56/322 (17%), Positives = 89/322 (27%), Gaps = 63/322 (19%)
Query: 161 NAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD 220
+ + + R P + + G + C E+ P W +
Sbjct: 5 SELESS---HHHHHHGGRRSLHFVSEP-SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60
Query: 221 NDGKFGPDVEVYQ-ELGVLRFNNIA-----TGDEGKYTCIAENSAGKEVM--NAYIHVLT 272
G D Q G L NI DEG Y C A ++ A + V
Sbjct: 61 LILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAV 329
++ G+ + L+CE G PMPT+ W K + P + R +
Sbjct: 121 PLRFLSQTES-ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD-SRVVVLPSGA 178
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKV-ITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
I+ ++ D+G Y+C +N A T V + P
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPG--------------------- 217
Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW-- 446
RP G A + C G P S W
Sbjct: 218 --------------------LHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257
Query: 447 --QPLQGYFPSHVVEYNGELRL 466
+ +Q + + L +
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLI 279
Score = 118 bits (298), Expect = 1e-29
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 12/188 (6%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
P A EG +EC + P + W + + + ++ G L+I+ +
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
T D G Y C + N+ AS ++ P HP+ + + +C +
Sbjct: 283 TDDDSGTYTCVVTYKNENI---SASAELTVLVPPWFLNHPS-NLYAYESMDIEFECAVS- 337
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
G+P PT W++ + ++ LR + DEG Y C+AEN AG +A
Sbjct: 338 GKPVPTVNWMKNGDVVIPSDYFQIVGG-SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396
Query: 268 IHVLTLPA 275
+ V PA
Sbjct: 397 LIVPK-PA 403
Score = 75.3 bits (185), Expect = 8e-15
Identities = 34/228 (14%), Positives = 54/228 (23%), Gaps = 65/228 (28%)
Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIA 313
+ + + PS+ G + L C A R +P + W K
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSD-AVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 314 PFDRN-------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITVAVEH 364
L L + + + + D G Y+C + V V
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNI-LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA- 119
Query: 365 RPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTV 424
P R + T
Sbjct: 120 ----------------------------------------------GPLRFLSQTESITA 133
Query: 425 KPGDIANIRCSAIGATPISIRW----QPLQGYFPSH--VVEYNGELRL 466
GD ++C IG +I W Q L VV +G L++
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI 181
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 176 bits (449), Expect = 3e-52
Identities = 63/294 (21%), Positives = 109/294 (37%), Gaps = 21/294 (7%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI-------AGE 140
S +V ++ + G C + +I W E++
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
L I D G+Y C +A+G + +++ + R + Q F G+ A+
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI--YQKLTFREVVS-PQEFKQGEDAE 117
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSA 259
+ C + P+P +W+ + + D L+ NI DEG Y C A
Sbjct: 118 VVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 176
Query: 260 GKEV-MNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
E+ I ++ +P P S + GE +T C A+G P P +SW + I
Sbjct: 177 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
++ + + T T+ ++ SD G Y C N AG +EK + V +
Sbjct: 237 ENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 129 bits (327), Expect = 2e-34
Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 68/302 (22%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---- 235
+ ++ I + VG+ C GEP + + G+ +
Sbjct: 4 LLQVTISLS-KVELSVGESKFFTCTAI-GEPESIDWY---NPQGEKIISTQRVVVQKEGV 58
Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
L N D G Y C A ++ G+ + + S + GE
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP-QEFKQGEDAE 117
Query: 294 LECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
+ C + P P VSW+ + N R + + I ++ +SD G Y+C G+
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDN--RFAMLANNNLQILNINKSDEGIYRCEGRVE 175
Query: 351 AGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSV 410
A E + I
Sbjct: 176 ARGE---------------------------------------------IDFRDIIVIVN 190
Query: 411 EPPRITL--RPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
PP I++ + T + G+ C A G+ +I W + ++ + N EL
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 465 RL 466
+
Sbjct: 251 TV 252
Score = 84.1 bits (208), Expect = 3e-18
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 56/204 (27%)
Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
+ L VTI+ S+ V + GE C A G P +
Sbjct: 2 MALLQVTISLSK-VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 331 T--IASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
I + DAG Y+C ++ G T+E + + +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------------ 96
Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW- 446
+ Q K G+ A + C + ++ W
Sbjct: 97 -----------------------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 133
Query: 447 ---QPLQGYFPS-HVVEYNGELRL 466
+ + + + N L++
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQI 157
Score = 38.6 bits (90), Expect = 0.002
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S+ ++T+ + + G+ C+AIG P SI W
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIG-EPESIDW 37
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 184 bits (468), Expect = 8e-52
Identities = 56/271 (20%), Positives = 87/271 (32%), Gaps = 18/271 (6%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
++P G +++ C + +P A W D Q + L I+ IT+ +
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-----TQELFISNITEKNS 438
Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
G+Y C N+ + E+P+ I N S+ D C E +
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTC--EPEAQNT 496
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVL 271
T W P +++ L N+ D Y C +NS + + VL
Sbjct: 497 TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
P I S G L L C + P P SW V
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI---------NGIPQQHTQVLF 607
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
IA + ++ G Y C N A I ++
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 181 bits (460), Expect = 1e-50
Identities = 60/377 (15%), Positives = 100/377 (26%), Gaps = 72/377 (19%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI----AGETLIINGITKADEG 153
+ V + C+ + T W +NQ + TL + +T+ D G
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVG 355
Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
Y C IQN D + V P + + G + C P
Sbjct: 356 PYECGIQNELSVDHSDPVILNV--LYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQ 412
Query: 214 QTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
+W+ DG + Q L +NI + G YTC A NSA +
Sbjct: 413 YSWLI---DGN------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 274 PAV---TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
+ +I+ + V + + CE + T W +
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTL 522
Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
T+ +V +DA Y C +NS +T+ V
Sbjct: 523 TLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL-------------------------- 556
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPL 449
P + P + G N+ C + W
Sbjct: 557 --------------------YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSW--- 593
Query: 450 QGYFPSHVVEYNGELRL 466
++ L +
Sbjct: 594 --RINGIPQQHTQVLFI 608
Score = 177 bits (449), Expect = 4e-49
Identities = 65/447 (14%), Positives = 113/447 (25%), Gaps = 90/447 (20%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIA------------- 138
++ + + EG +V + + W K + +I
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 139 ---------GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
+L+I I + D G Y + + + +V E+P+ I N
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV-YPELPKPSISSNN 119
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEG 249
S+ D C E T W + P +++ L N+ D
Sbjct: 120 SKPVEDKDAVAFTC--EPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTA 177
Query: 250 KYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
Y C +N + ++VL P S R GE L L C A P SW
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237
Query: 309 VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
S I ++ +++G Y C NS + + E
Sbjct: 238 FV---------NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
Query: 369 GPISPRP------------------------------GADILPDGDEYYRPEPE------ 392
+ +
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLS 348
Query: 393 -----EGEYV--------YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA 439
G Y ++ P T+ P +PG ++ C A
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN 408
Query: 440 TPISIRWQPLQGYFPSHVVEYNGELRL 466
P W ++ ++ EL +
Sbjct: 409 PPAQYSW-----LIDGNIQQHTQELFI 430
Score = 174 bits (443), Expect = 3e-48
Identities = 80/495 (16%), Positives = 136/495 (27%), Gaps = 108/495 (21%)
Query: 18 NALTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCN--TYYAPGRWMWLNFYS 75
+ E+ + + N+ V + C T A W W+N S
Sbjct: 92 KSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW-WVNNQS 150
Query: 76 F------------LSLII-----------ICLA---YLSPQANEVQV-----------TP 98
+L + C + +++ V + +P
Sbjct: 151 LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISP 210
Query: 99 RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
S G + + C + +P A W + Q + L I IT + G Y C
Sbjct: 211 LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-----TQELFIPNITVNNSGSYTC 265
Query: 158 SIQNAQGNVFQDY-ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216
N+ + + +I V P+ I N S D + C E + T W
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEP-PKPFITSNNSNPVEDEDAVALTC--EPEIQNTTYLW 322
Query: 217 IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPA 275
+ P +++ + L ++ D G Y C +N + + ++VL P
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD 382
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
Y RPG L+L C A P SW+ + + I+++
Sbjct: 383 DPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI---------DGNIQQHTQELFISNI 433
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGE 395
E ++G Y C NSA + + E
Sbjct: 434 TEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--------------------------- 466
Query: 396 YVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQG 451
P + V+ D C + W Q L
Sbjct: 467 ----------------PKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPV 509
Query: 452 YFPSHVVEYNGELRL 466
+ N L L
Sbjct: 510 SPRLQLSNGNRTLTL 524
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 173 bits (439), Expect = 1e-50
Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 18/285 (6%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIA-GETLIINGITKAD 151
++ + + G VT+ C S + +++W + + G TL T +
Sbjct: 6 VIEPSGPELVVEPGETVTLRCVS---NGSVEWDGPISPYWTLDPESPGSTLTTRNATFKN 62
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y C+ +I + ++ T + G A + C++
Sbjct: 63 TGTYRCTELEDPM---AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119
Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHV 270
+ + +R V + D Y C + + ++ V
Sbjct: 120 DSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
Query: 271 LTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-----IAPFDRNLER 321
+ P + + PS+ V GE + C AT + +K P + + +
Sbjct: 180 NRVHPEPPQIKLEPSKLV-RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ ++ +V DAG Y C+ N GT + V
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 128 bits (322), Expect = 6e-34
Identities = 45/297 (15%), Positives = 77/297 (25%), Gaps = 63/297 (21%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P I G+ ++CV + W P + ++ L
Sbjct: 5 PVIEPSGP-ELVVEPGETVTLRCVSNG-----SVEWDGPISPY---WTLDPESPGSTLTT 55
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
N + G Y C +++V ++ V+V G+ L C T
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115
Query: 301 -RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
+VS ++ + + I + D+ Y C + I
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175
Query: 359 TVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR 418
+ V EPP+I L
Sbjct: 176 WLKVNRVH-------------------------------------------PEPPQIKLE 192
Query: 419 PVRQTVKPGDIANIRCSAIGA-TPISIRWQ--------PLQGYFPSHVVEYNGELRL 466
P + G+ A I CSA A ++ + PL F + + L L
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249
Score = 35.3 bits (81), Expect = 0.030
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ-PLQGYFPSHVVEYNGELRL 466
P I V+PG+ +RC + G S+ W P+ Y+ L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTT 55
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 171 bits (436), Expect = 5e-50
Identities = 70/291 (24%), Positives = 110/291 (37%), Gaps = 26/291 (8%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ-------EQLPPNMIAGETLII-NG 146
P+ Q G + C++ DP + W+K + E + + AG L I
Sbjct: 11 KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL 70
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRADI 201
T DE VY C QN+ G + +A + V P I + P + A +
Sbjct: 71 RTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQ-LKVVERTRTATM 128
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSA 259
C G P P TW + ++L G L+ + D+GKY C+A NSA
Sbjct: 129 LCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187
Query: 260 GKEVM---NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
G N Y+ V + + PG + + C A G PMP V W++
Sbjct: 188 GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG----A 243
Query: 317 RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
+L ++ + D+ Y C+ +S G E V + V+ P+
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPK 294
Score = 143 bits (362), Expect = 2e-39
Identities = 69/284 (24%), Positives = 102/284 (35%), Gaps = 65/284 (22%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--- 235
E PR P Q + G A C G+P P TW + K E
Sbjct: 5 EPPRFIKEP-KDQIGVSGGVASFVCQAT-GDPKPRVTWNK--KGKKVNSQRFETIEFDES 60
Query: 236 --GVLRFNNIATG-DEGKYTCIAENSAGKEVMNAYIHVL-------TLPAVTITPSEYVS 285
VLR + T DE Y C+A+NS G+ ++A + VL P + + P V
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV- 119
Query: 286 VRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQ 342
V T+ C A+G P P ++W K + P N R + I S E+D G+
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN-GRIKQLRSGALQIESSEETDQGK 178
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402
Y+C+ NSAG Y+ +
Sbjct: 179 YECVATNSAGV-------------------------------------------RYSSPA 195
Query: 403 NASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
N + PR ++ P+ + PG NI C A+G+ ++W
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Score = 119 bits (301), Expect = 8e-31
Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 16/215 (7%)
Query: 78 SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN- 135
L ++ L + + P+ + T+ C ++ +P I W KD + P+
Sbjct: 95 KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFL-PVDPSA 153
Query: 136 ------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD-KREMPRIRIHPN 188
+ L I + D+G Y C N+ G + A++ V + PR I P
Sbjct: 154 SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILP- 212
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
S + G +I CV G P P W++ P+ +G D
Sbjct: 213 MSHEIMPGGNVNITCVAV-GSPMPYVKWMQ--GAEDLTPED--DMPVGRNVLELTDVKDS 267
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
YTC+A +S G A I V +LP +
Sbjct: 268 ANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
Score = 80.6 bits (199), Expect = 5e-17
Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 45/182 (24%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
P P + G + C+ATG P P V+W K + + ++
Sbjct: 3 GEEPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 327 RAVYTIASVR-ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
AV I +R D Y+C+ +NS G + V +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG-------------- 107
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
P I + P + V+ A + C+A G I
Sbjct: 108 --------------------------FPNIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141
Query: 446 WQ 447
W
Sbjct: 142 WF 143
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 176 bits (446), Expect = 4e-48
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 46/403 (11%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI----A 138
+ Q + + V I C ++ + ++ + +P +
Sbjct: 122 RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 181
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
+ I + G+ C + + + V + + + P+ VG++
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEK 241
Query: 199 ADIQCVLEAGEPSPTQTW------------IRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
+ C E + + + D K E+ + L L + +
Sbjct: 242 LVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRPMP 304
D+G YTC A + + + ++ V P V V GE + + + G P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360
Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAV 362
+ W K P + + + V TI V E D G Y I N E++ V+++ V
Sbjct: 361 EIKWYKNGIPLE---SNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV 417
Query: 363 EHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE--PPRITLRPV 420
P+ G S D Y G+ +++C+V PP +
Sbjct: 418 YVPPQIGEKSLISPVD------------------SYQYGTTQTLTCTVYAIPPPHHIHWY 459
Query: 421 RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGE 463
Q + + ++ W+ ++ + + +E N
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502
Score = 165 bits (419), Expect = 1e-44
Identities = 69/446 (15%), Positives = 114/446 (25%), Gaps = 115/446 (25%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN--MIAGETLII 144
P A G +V I K P IKW K+ L N + AG L I
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIP-LESNHTIKAGHVLTI 385
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS--QTFIVGDRADIQ 202
+++ D G Y + N + + + P+I S ++ G +
Sbjct: 386 MEVSERDTGNYTVILTNPISKE-KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT 444
Query: 203 CVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQE--------------------------- 234
C + P P W + +
Sbjct: 445 CTVY-AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503
Query: 235 --------LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSV 286
V A Y C A N G+ HV P +T+ P +
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD--MQP 561
Query: 287 RPGEPLTLECEATGRPMPTVSWVK------------YIAPFDRNLERDELTSRAVY---- 330
E ++L C A ++W K P +NL+ + ++
Sbjct: 562 TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNST 621
Query: 331 ------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
+ + D G Y C+ ++ + + +
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER----------------- 664
Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISI 444
P IT QT G+ + C+A G P I
Sbjct: 665 --------------------------VAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 445 RW----QPLQGYFPSHVVEYNGELRL 466
W + L + + N L +
Sbjct: 699 MWFKDNETLVEDSGIVLKDGNRNLTI 724
Score = 164 bits (415), Expect = 5e-44
Identities = 62/433 (14%), Positives = 111/433 (25%), Gaps = 86/433 (19%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQE---------QLPPNMIAGETLI 143
+ + + + + I C+ + W N + + + +TL
Sbjct: 33 RLSIQKDILTIKANTTLQITCRGQ---RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLT 89
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV----GDRA 199
I + D G Y C + + V P I + +
Sbjct: 90 IPKVIGNDTGAYKCFYRETDL---ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
I C+ + + P+ + + + G C A+ +
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Query: 260 GKEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
YI V+ + V ++PS + + GE L L C A + +
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266
Query: 317 RNLERDELTSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
++ TI V SD G Y C + T++ V V
Sbjct: 267 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326
Query: 365 RPEYGPISPRPGADILPDGDEYY-------RPEPE------------------------- 392
+P S G+ P PE
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIM 386
Query: 393 ------EGEYVYAVGSN----ASISCSVE-----PPRITLRPVRQ---TVKPGDIANIRC 434
G Y + +N S V PP+I + + + + G + C
Sbjct: 387 EVSERDTGNYT-VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445
Query: 435 SAIGA-TPISIRW 446
+ P I W
Sbjct: 446 TVYAIPPPHHIHW 458
Score = 155 bits (393), Expect = 4e-41
Identities = 67/421 (15%), Positives = 118/421 (28%), Gaps = 115/421 (27%)
Query: 87 LSPQANEVQVTPRQ-QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------- 137
+ + +V ++P G ++ + C + + I ++ + +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 138 ---------AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
TL I+G+T++D+G+Y C+ + S V E P +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM---TKKNSTFVRVHEKPFVAFGSG 335
Query: 189 ASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
G+R I G P P W + +G + VL ++
Sbjct: 336 MESLVEATVGERVRIPAKYL-GYPPPEIKWYK---NGIPLESNHTIKAGHVLTIMEVSER 391
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS----VRPGEPLTLECEATGRP 302
D G YT I N KE + + ++ I +S + G TL C P
Sbjct: 392 DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451
Query: 303 MP-TVSWVK-----------------------------------YIAPFDRNLERDELTS 326
P + W I E +
Sbjct: 452 PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKN 511
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
+ V T+ + + YKC N G E+VI+ V
Sbjct: 512 KTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT----------------------- 548
Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P ITL+P + ++ C+A +T ++ W
Sbjct: 549 ------------------------RGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTW 583
Query: 447 Q 447
Sbjct: 584 Y 584
Score = 143 bits (361), Expect = 6e-37
Identities = 52/346 (15%), Positives = 90/346 (26%), Gaps = 74/346 (21%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE------ 140
PQ E + S G+ T+ C + P I W +E+
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 141 ---------------------------------TLIINGITKADEGVYICSIQNAQGNVF 167
+ +Y C N G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG--- 537
Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP 227
+ I P I + P+ + + C + TW +
Sbjct: 538 RGERVISFHVTRGPEITLQPD--MQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIH 594
Query: 228 DVEV----------------------YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
E+ ++ ++ N + D+G Y C+A++ K+
Sbjct: 595 VGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC 654
Query: 266 AYIHV----LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER 321
+ P +T + GE + + C A+G P P + W K +
Sbjct: 655 VVRQLTVLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
TI VR+ D G Y C + G + +E E
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 759
Score = 131 bits (330), Expect = 7e-33
Identities = 45/284 (15%), Positives = 84/284 (29%), Gaps = 48/284 (16%)
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
+++C A S+ +D PR+ I + T I C G+
Sbjct: 8 AVALWLCVETRAAS---VGLPSVSLDL---PRLSIQKD-ILTIKANTTLQITCR---GQR 57
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQE-----LGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
W+ P+N VEV + L + D G Y C + V+
Sbjct: 58 DLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIY 115
Query: 266 AYIHVLTLPAVTITPSE----YVSVRPGEPLTLECEATGRPMPTVSWVKY----IAPFDR 317
Y+ P + + Y++ + + + C + + +Y P
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
+ D S+ +TI S S AG C K + + + ++ + V + P
Sbjct: 176 RISWD---SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP-- 230
Query: 378 DILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRITLR 418
+VG ++C+ I
Sbjct: 231 ---------------SHGIELSVGEKLVLNCTARTELNVGIDFN 259
Score = 107 bits (269), Expect = 4e-25
Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 30/226 (13%)
Query: 83 CLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA--- 138
+ E V++ C + W K + LP ++
Sbjct: 541 RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 139 -----------------------GETLIINGITKADEGVYICSIQNAQGNVFQD-YASIQ 174
+ + + D+G Y+C Q+ + +
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
V +R P I + +QT +G+ ++ C G P P W + + + +
Sbjct: 661 VLERVAPTITGNLE-NQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDG 718
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
L + DEG YTC A + G + A+ + T
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 764
Score = 92.1 bits (228), Expect = 6e-20
Identities = 34/260 (13%), Positives = 65/260 (25%), Gaps = 67/260 (25%)
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV 306
+ C+ +A + + L LP ++I ++ L + C +
Sbjct: 8 AVALWLCVETRAASVGLPSV---SLDLPRLSIQKDILT-IKANTTLQITCRGQ----RDL 59
Query: 307 SWVKY-----IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361
W+ E + TI V +D G YKC + + + V
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 362 VEHRPEYGPISPR---------------------------------PGADILPDGDEY-- 386
P +S + P +PDG+
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 387 --------YRPEPE-EGEYV-YAVGSNASISCSV--------EPPRITLRPVR-QTVKPG 427
G A ++ S + + L P + G
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239
Query: 428 DIANIRCSAIGATPISIRWQ 447
+ + C+A + I +
Sbjct: 240 EKLVLNCTARTELNVGIDFN 259
Score = 40.1 bits (93), Expect = 0.001
Identities = 12/115 (10%), Positives = 24/115 (20%), Gaps = 52/115 (45%)
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ S + C+ +A
Sbjct: 1 MQSKVLLAVALWLCVETRAASV-------------------------------------- 22
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S S++ PR++++ T+K I C + W
Sbjct: 23 ------------GLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQR--DLDWLW 63
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 165 bits (418), Expect = 1e-47
Identities = 42/284 (14%), Positives = 84/284 (29%), Gaps = 18/284 (6%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADE 152
++ + + G+ VT+ C + +++W L N T +
Sbjct: 7 IEPSVPELVVKPGATVTLRCVG---NGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63
Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP 212
G Y C+ A+I + ++ R A + C+L
Sbjct: 64 GTYRCTEPGDPL---GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVL 271
+ +R + + Y C A K + ++ + V
Sbjct: 121 GVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
Query: 272 TL----PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-----IAPFDRNLERD 322
+ PA+T+ P+E V GE + C A+ + ++++ P + +
Sbjct: 181 KVIPGPPALTLVPAELV-RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ V AG Y C+ N G + V
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 121 bits (305), Expect = 1e-31
Identities = 42/276 (15%), Positives = 67/276 (24%), Gaps = 59/276 (21%)
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-- 235
+P I G ++CV + W P P +Y +
Sbjct: 2 GSIPVIEPSVP-ELVVKPGATVTLRCVGNG-----SVEWDGPP-----SPHWTLYSDGSS 50
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
+L NN + G Y C +++V ++ V V + L
Sbjct: 51 SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110
Query: 296 CEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG-T 353
C T VS V+ + +TI + + Y+C
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV 170
Query: 354 EEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPP 413
I + V+ PP
Sbjct: 171 MSISIRLKVQKVIPG-------------------------------------------PP 187
Query: 414 RITLRPVRQTVKPGDIANIRCSAIGA-TPISIRWQP 448
+TL P G+ A I CSA + Q
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223
Score = 68.8 bits (168), Expect = 4e-13
Identities = 25/201 (12%), Positives = 49/201 (24%), Gaps = 61/201 (30%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT 331
++P + + E V V+PG +TL C G +V W P + S ++ +
Sbjct: 3 SIPVIEPSVPELV-VKPGATVTLRCVGNG----SVEWDG---PPSPHWTLYSDGSSSILS 54
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ + G Y+C I + V+
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK---------------------------- 86
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGATP-ISIRWQPL 449
+P R + V A + C + +
Sbjct: 87 -------------------DPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRV 127
Query: 450 QGYFPS----HVVEYNGELRL 466
+G + +
Sbjct: 128 RGRPLMRHTNYSFSPWHGFTI 148
Score = 61.1 bits (148), Expect = 1e-10
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP---------PNMIAGETL 142
+ + P + G I C S+ + + N +L TL
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTL 247
Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
++ + G Y C N QG S+ E H +
Sbjct: 248 NLDQVDFQHAGNYSCVASNVQGK---HSTSMFFRVVESAGNSHHHH 290
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 165 bits (420), Expect = 8e-47
Identities = 70/411 (17%), Positives = 118/411 (28%), Gaps = 93/411 (22%)
Query: 94 VQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPN------MIAGETLIIN 145
++ P + E + +EC + ND W KD + +L+
Sbjct: 9 LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS-YNWQEHNAALRKDEGSLVFL 67
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
+DEG Y C + G S + + + +T I G + CVL
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKT--YLIASPAKTH-EKTPIEGRPFQLDCVL 124
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVY------QELGVLRFNNIA---TGDEGKYTCIAE 256
P P TW + + DV + G L F + D KY C A+
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 257 NSAG-KEVMNAYIHVLTL----------PAVTITPSEYVSVRPGEPLTLECEATGRPMPT 305
N+A +EV+ + + P + + + G+ + C PM
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKD-MMAKAGDVTMIYCMYGSNPMGY 243
Query: 306 VSWVKYIAPFDRN----LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT-EEKVITV 360
++ K + N + R TS + D G Y C N G ++ + +
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 361 AVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPV 420
V P+ +P
Sbjct: 304 TVV-----------------------------------------------SAPKYEQKPE 316
Query: 421 RQ-TVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
+ VK G I C G ++ W +PL + L +
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---GGRATVTDSGLVI 364
Score = 159 bits (404), Expect = 2e-44
Identities = 59/298 (19%), Positives = 98/298 (32%), Gaps = 39/298 (13%)
Query: 96 VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE----------TLI 143
+++ EG ++C + P I W K P + L
Sbjct: 105 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Query: 144 INGITKADE---GVYICSIQNAQGNVFQDYASIQV--------DKREMPRIRIHPNASQT 192
+TK D Y+C+ +NA + ++ + P +
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK-DMM 223
Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDE 248
GD I C+ P + + D P+ + + L F DE
Sbjct: 224 AKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282
Query: 249 GKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
G YTC +N GK + + V++ P P + + V+ G+ +T+ C+ TG P P V
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342
Query: 308 WVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
W ++ + L I V+ D G Y C N G + V V
Sbjct: 343 WSHNAKPLSGGRATVTDSGL------VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 123 bits (311), Expect = 2e-31
Identities = 56/309 (18%), Positives = 86/309 (27%), Gaps = 60/309 (19%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQEL-G 236
+ P ++ P A F + ++C++E G + +W + + ++ G
Sbjct: 5 KYPVLKDQP-AEVLFRENNPTVLECIIE-GNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
L F DEG Y C AE AG L A E + G P L+
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE-KTPIEGRPFQLD 121
Query: 296 CE-ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT------IASVRE---SDAGQYKC 345
C P P ++W K ++ D N + + R V + SD +Y C
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVC 181
Query: 346 IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNAS 405
KN+A EE V+ G
Sbjct: 182 TAKNAAVDEEVVLV------------------------------------EYEIKGVTKD 205
Query: 406 ISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGY----FPSHV 457
S P K GD+ I C + + + G H
Sbjct: 206 NSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN 265
Query: 458 VEYNGELRL 466
L
Sbjct: 266 RTSGKRLLF 274
Score = 74.6 bits (183), Expect = 1e-14
Identities = 30/183 (16%), Positives = 43/183 (23%), Gaps = 52/183 (28%)
Query: 269 HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNL-ERDELTS 326
V P + P+E V R P LEC G SW K ++
Sbjct: 2 PVDKYPVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDE 385
+ SD G Y+C + AG +VI+
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT---------------------- 98
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SI 444
+ +T G + C A P I
Sbjct: 99 -------------------------YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133
Query: 445 RWQ 447
W+
Sbjct: 134 TWK 136
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 165 bits (418), Expect = 2e-46
Identities = 77/399 (19%), Positives = 129/399 (32%), Gaps = 81/399 (20%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM-------IAGETLIIN---- 145
+ + IEC+ +P+ + W+++++ TL+I+
Sbjct: 24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRF-FNIAKDPRVSMRRRSGTLVIDFRSG 82
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
G + EG Y C +N G + +QV + P G +QC
Sbjct: 83 GRPEEYEGEYQCFARNKFGTALSNRIRLQV--SKSPLWPKENLDPVVVQEGAPLTLQCNP 140
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD-EGKYTCIAENSAGKEV- 263
G PSP W+ + G L F+N+ D + Y+C A +
Sbjct: 141 PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
Query: 264 --MNAYIHVLTLPAVTITP---------SEYVSVRPGEPLTLECEATGRPMPTVSWVKYI 312
+ VLT V + V G L LEC A+G P P ++W K
Sbjct: 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG 260
Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
+ + E ++A+ I +V E D+G+Y C+ N G+ I+V V+
Sbjct: 261 GDLPSDKAKFENFNKAL-RITNVSEEDSGEYFCLASNKMGSIRHTISVRVK--------- 310
Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
P P + PG+ +
Sbjct: 311 --------------------------------------AAPYWLDEPKNLILAPGEDGRL 332
Query: 433 RCSAIGATPISIRW----QPLQGYFPSHVVEY-NGELRL 466
C A G +++W +PLQ P+ E +
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF 371
Score = 163 bits (415), Expect = 5e-46
Identities = 58/289 (20%), Positives = 96/289 (33%), Gaps = 26/289 (8%)
Query: 94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
+ EG+ +T++C PS I W + E + + L + +
Sbjct: 119 PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNV 178
Query: 148 TKAD-EGVYICSIQNAQGNVFQDYASIQVD-------KREMPRIRIHPN--ASQTFIVGD 197
D + Y C+ + + Q + P +SQ + G
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238
Query: 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAE 256
++C+ G P+P W + G D ++ LR N++ D G+Y C+A
Sbjct: 239 DLLLECIAS-GVPTPDIAWYK--KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLAS 295
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
N G + V P P + + PGE L C A G P PTV W+ +
Sbjct: 296 NKMGSIRHTISVRVKAAPYWLDEPKN-LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354
Query: 314 PFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
N + + + S Y+C N G V+V
Sbjct: 355 SAPPN--PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 124 bits (313), Expect = 9e-32
Identities = 61/308 (19%), Positives = 92/308 (29%), Gaps = 47/308 (15%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--DGKFGPD 228
SIQ + + P I D I+C + G P+P+ W R + P
Sbjct: 7 PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPR 65
Query: 229 VEVYQELGVLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEY 283
V + + G L + + G EG+Y C A N G + + V P +
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125
Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDA-G 341
V V+ G PLTL+C G P P + W+ +R ++V D
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 342 QYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVG 401
Y C + + ++ R + + P G
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG------------------ 227
Query: 402 SNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPS---HVV 458
Q V G + C A G I W G PS
Sbjct: 228 ----------------TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE 271
Query: 459 EYNGELRL 466
+N LR+
Sbjct: 272 NFNKALRI 279
Score = 122 bits (307), Expect = 7e-31
Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 12/189 (6%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLI 143
P Q T Q G + +EC ++ P+ I W K + LP + + L
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD-LPSDKAKFENFNKALR 278
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
I +++ D G Y C N G++ +I V + P P + G+ + C
Sbjct: 279 ITNVSEEDSGEYFCLASNKMGSI---RHTISVRVKAAPYWLDEPK-NLILAPGEDGRLVC 334
Query: 204 VLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
G P PT W+ P+ + F + Y C N G
Sbjct: 335 RAN-GNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 263 VMNAYIHVL 271
+ NA++ VL
Sbjct: 394 LANAFVSVL 402
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 400 VGSNASISCSV-EPPRITLRPVR-QTVKPGDIANIRCSAIGATPISIRW 446
+ + SI + +PP IT + + V P D I C A G S W
Sbjct: 3 IPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHW 51
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 167 bits (424), Expect = 2e-46
Identities = 65/425 (15%), Positives = 119/425 (28%), Gaps = 84/425 (19%)
Query: 46 EVTVYEGGDAELKCNTYYAPG--RWMW-----LNFYSFLSLII-----------ICLA-- 85
++ V G + L C PG +W + N I C
Sbjct: 45 DLIVRVGDEIRLLCT---DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH 101
Query: 86 ------YLS-PQANEVQVTPRQQSAPEGSQVTIECKSNDPSAT-IKWSKDNQEQLPPNM- 136
Y+ ++ + R E + + C DP T + LP ++
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161
Query: 137 ----IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQ 191
+I + CS+ +V + ++V + + AS
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-------YQELGVLRFNNIA 244
G+ + C ++ S TW R ++ K Y+ L ++
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP--SEYVSVRPGEPLTLECEATGRP 302
D G + C A N+ G + + V+ + I P + V V GE + L E P
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341
Query: 303 MPT-VSWVK-------YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
P W+ + ++ + + + ++ ++ G Y + NS
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Query: 355 EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE--- 411
V V +P I N + C
Sbjct: 402 AIAFNVYVNTKP---EILTYD------------------------RLVNGMLQCVAAGFP 434
Query: 412 PPRIT 416
P I
Sbjct: 435 EPTID 439
Score = 164 bits (417), Expect = 2e-45
Identities = 58/311 (18%), Positives = 92/311 (29%), Gaps = 48/311 (15%)
Query: 94 VQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPP-----------NMIAGE 140
V V+ EG + T+ C K S W ++N + N
Sbjct: 214 VSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQA 273
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV--GDR 198
TL I+ D GV++C N G+ + ++ + I I P + T V G+
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSA---NVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330
Query: 199 ADIQCVLEAGEPSPTQ-TWIRPD-------NDGKFGPDVEVYQELGVLRFNNIATGDEGK 250
D+ E P P WI + D + + + L + + G
Sbjct: 331 VDLIVEYE-AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
YT + NS + ++V T P + L+C A G P PT+ W
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYD-------RLVNGMLQCVAAGFPEPTIDWYF 442
Query: 311 YIAPFDRNLER--------------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
R +I S G +C N G
Sbjct: 443 CPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSA 502
Query: 357 VITVAVEHRPE 367
A + +
Sbjct: 503 YFNFAFKGNNK 513
Score = 154 bits (390), Expect = 1e-41
Identities = 58/424 (13%), Positives = 119/424 (28%), Gaps = 93/424 (21%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEG 153
+ G ++ + C +KW+ + + N I + G
Sbjct: 39 IHPGKSDLIVRVGDEIRLLCT---DPGFVKWTFEILD--ETNENKQNEWITEKAEATNTG 93
Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
Y C+ ++ SI V R+ ++ + S + ++C +P T
Sbjct: 94 KYTCTNKHGLS------NSIYVFVRDPAKLFLVDR-SLYGKEDNDTLVRC--PLTDPEVT 144
Query: 214 QTWIRPDNDGKFGPDVEVYQ--ELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHV 270
++ D+ + G++ + C + + + V
Sbjct: 145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV 204
Query: 271 L----TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVK-------YIAPFDRN 318
+P V+++ + Y+ +R GE T+ C +W + +
Sbjct: 205 RPAFKAVPVVSVSKASYL-LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263
Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP----- 373
+A TI+S R +D+G + C N+ G+ T+ V + + I P
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG-FINIFPMINTT 322
Query: 374 ---------------------------RPGADILPDGDEYYRPEPE-------------- 392
++Y + E E
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382
Query: 393 ----EGEYV-YAVGSNASISCSVE-----PPRITLRPVRQTVKPGDIANIRCSAIGATPI 442
G Y S+ + + + P I T ++C A G
Sbjct: 383 KGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEIL------TYDRLVNGMLQCVAAGFPEP 436
Query: 443 SIRW 446
+I W
Sbjct: 437 TIDW 440
Score = 99.4 bits (247), Expect = 2e-22
Identities = 27/252 (10%), Positives = 60/252 (23%), Gaps = 63/252 (25%)
Query: 247 DEGKYTCI----AENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
+ C+ G + + P++ S+ + VR G+ + L C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLI-VRVGDEIRLLCTDPG-- 62
Query: 303 MPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI---- 358
V W L+ + + ++ G+Y C K+ V
Sbjct: 63 --FVKWTF------EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDP 114
Query: 359 ----------------TVAVEHRPEYGPISP----RPGADILPDGDEY------------ 386
V ++ LP +
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKS 174
Query: 387 YRPEPEEGEYV----YAVGSNASISCSVE-------PPRITLRPVRQTVKPGDIANIRCS 435
+ S S ++ P +++ ++ G+ + C+
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234
Query: 436 AIGA-TPISIRW 446
+ + W
Sbjct: 235 IKDVSSSVYSTW 246
Score = 94.0 bits (233), Expect = 1e-20
Identities = 34/223 (15%), Positives = 57/223 (25%), Gaps = 38/223 (17%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPP----------- 134
N + +G V + + + +W N+
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
N+ L + + + G Y + N+ N + V P I +
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVN---AAIAFNVYVNTKPEILTYD------- 419
Query: 195 VGDRADIQCVLEAGEPSPTQTW-------------IRPDNDGKFGPDVEVYQELGV-LRF 240
+QCV G P PT W + P + + +L V
Sbjct: 420 RLVNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSI 478
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
++ A G C A N GK I P +
Sbjct: 479 DSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHH 521
Score = 57.0 bits (137), Expect = 6e-09
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 22/118 (18%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSK-------DNQEQLPPNMIAGE---- 140
V P + ++C + P TI W + LP ++
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467
Query: 141 -------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQ 191
I+ G C N G A + + +IHP+
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK---TSAYFNFAFKGNNKEQIHPHHHH 522
Score = 41.2 bits (96), Expect = 6e-04
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 41/154 (26%)
Query: 336 RESDAGQYKCI----GKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD------- 384
A + C+ + G+ + ++ P I P I+ GD
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPS---IHPGKSDLIVRVGDEIRLLCT 59
Query: 385 -----EYYRPEPEE-------------------GEY--VYAVGSNASISCSV-EPPRITL 417
++ +E G+Y G + SI V +P ++ L
Sbjct: 60 DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL 119
Query: 418 RPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
K + +RC + + QG
Sbjct: 120 VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQG 153
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 160 bits (405), Expect = 2e-45
Identities = 54/320 (16%), Positives = 96/320 (30%), Gaps = 54/320 (16%)
Query: 98 PRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPN---MIAGETLIINGITKADE 152
Q G V + C P W KD L P+ ++ + L + + D
Sbjct: 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTG-LVPSERVLVGPQRLQVLNASHEDS 73
Query: 153 GVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS---------------------Q 191
G Y C + Q + + A
Sbjct: 74 GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLL 133
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIATG 246
+ +C G P+P+ +W++ N +F + +++ + L ++
Sbjct: 134 AVPAANTVRFRCPAA-GNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
D G YTC+ EN G + VL P + + G + C+
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250
Query: 303 MPTVSWVKYIAPFDRNLERDELTSRAVY---------------TIASVRESDAGQYKCIG 347
P + W+K++ + D V ++ +V DAG+Y C+
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 348 KNSAGTEEKVITVAVEHRPE 367
NS G + V E
Sbjct: 311 GNSIGFSHHSAWLVVLPAEE 330
Score = 128 bits (323), Expect = 1e-33
Identities = 49/296 (16%), Positives = 76/296 (25%), Gaps = 71/296 (23%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
E+P F GD ++ C G P W++ + P V L
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK--DGTGLVPSERVLVGPQRL 63
Query: 239 RFNNIATGDEGKYTCIAENSAG---------------------KEVMNAYIHVLTLPAVT 277
+ N + D G Y+C + ++ P T
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 278 ITPS---EYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYT 331
+ ++V + C A G P P++SW+K R +
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ SV SD G Y C+ +N G+ + T+ V R
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS------------------------- 218
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P P QT G C I+W
Sbjct: 219 -----------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Score = 117 bits (295), Expect = 9e-30
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 95 QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIING 146
++ + + P + V C + +P+ +I W K+ +E + I G +L++
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 186
Query: 147 ITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
+ +D G Y C ++N G++ Q Y + P ++ A+QT ++G + C +
Sbjct: 187 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246
Query: 206 EAGEPSPTQTWIRPD--NDGKFGPDVEVY-------------QELGVLRFNNIATGDEGK 250
+ P W++ N K GPD Y +EL VL +N+ D G+
Sbjct: 247 Y-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 251 YTCIAENSAGKEVMNAYIHVLTLP 274
YTC+A NS G +A++ VL
Sbjct: 306 YTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 76.6 bits (188), Expect = 1e-15
Identities = 32/208 (15%), Positives = 49/208 (23%), Gaps = 44/208 (21%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDE--LTSRAV 329
+P E + G+ + L C G PM WVK L E L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD----GTGLVPSERVLVGPQR 62
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
+ + D+G Y C + + +
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD-------------------------- 96
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRIT----LRPVRQTVKPGDIANIRCSAIGATPISIR 445
P G+ P T + V + RC A G SI
Sbjct: 97 APSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSIS 156
Query: 446 W----QPLQG---YFPSHVVEYNGELRL 466
W + +G + L +
Sbjct: 157 WLKNGREFRGEHRIGGIKLRHQQWSLVM 184
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 162 bits (411), Expect = 3e-45
Identities = 50/347 (14%), Positives = 103/347 (29%), Gaps = 50/347 (14%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----- 140
L PQ++ + +T++ + + + W + +
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
+++I +T+ G Y+ IQ+ N V R + + ++
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATN---YTILFTVSIRNTLLYTLRR--PYFRKMENQDA 158
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSA 259
+ C+ E P P W+ D+ G+ + + + D C A N
Sbjct: 159 LVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNEL 214
Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK---YIAPF 315
G+E + L T P + ++ GEPL + C+A ++W +
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG 272
Query: 316 DRNLERDELTSRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
+ T+R + ++SV +D G Y C + V + +
Sbjct: 273 NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKG---- 325
Query: 371 ISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEP-PRIT 416
+ +Y S + P+I
Sbjct: 326 ---------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Score = 128 bits (322), Expect = 8e-33
Identities = 35/376 (9%), Positives = 91/376 (24%), Gaps = 67/376 (17%)
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
N + Y ++ + + + ++ A+ V +Q
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCAL-------RPQSSGT-VYEAAAVEVDVSASITLQV 70
Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIATGDEGKYTCIAENSAGKE 262
+++ + + W+ + P ++ + + + G+Y ++ A
Sbjct: 71 LVD-APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY-IAPFDRNLER 321
+ + + T+ + + L C + P P V WV E
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVEWVLCDSQGESCKEES 187
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK---VITVAVEHRPEYGPISPRPGAD 378
+ + + E +C +N G E I + + + + G
Sbjct: 188 PAVVKKEEKVL---HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244
Query: 379 I-----------------------LPDGDEYYRPEPEEGEYVYAVGS------------- 402
+ L +G+ + + +
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304
Query: 403 ---------NASISCSV-EPPRITLRPVRQT--VKPGDIANIRCSAIGATPISIRWQPLQ 450
+ S ++ E I + + + I W +
Sbjct: 305 YTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364
Query: 451 GYFPSHVVEYNGELRL 466
FP + +
Sbjct: 365 KSFPCEQKGLDNGYSI 380
Score = 99.0 bits (246), Expect = 1e-22
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 63/279 (22%)
Query: 247 DEGKYTCI----AENSAGKEVMNAYIHVLTLPA-----------VTITPSEYVSVRPGEP 291
D C+ N + ++Y V P T+ + V V
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKN 349
+TL+ + WV + + +L +R V + I + E+ AG+Y ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQ-PHFDLQNRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 350 SAGTEEKVITVAVEHRPEYGPISP--------------------------RPGADILPDG 383
A + TV++ + Y P +
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 384 DEYYR---------PEPEEGEYV----YAVGSNASISCSVE-PPRITLRPVRQTVKPGDI 429
+E E + +G + +++ + +K G+
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244
Query: 430 ANIRCSAIGATP-ISIRW----QPLQGYFPSHVVEYNGE 463
IRC A+ + W + L+ + Y+
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN 283
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 158 bits (402), Expect = 4e-45
Identities = 62/315 (19%), Positives = 104/315 (33%), Gaps = 51/315 (16%)
Query: 96 VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIA----GETLIINGITK 149
V V ++CK + I W KD +E TL+I +K
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 70
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA-- 207
D G+Y +++ +G +D + +++ + + + + IQ E
Sbjct: 71 KDAGIYEVILKDDRG---KDKSRLKLVDEAFKELMMEV-CKKIALSATDLKIQSTAEGIQ 126
Query: 208 -------GEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIATGDEGKYTCIA 255
W +G + V+ L+ N D+GKY
Sbjct: 127 LYSFVTYYVEDLKVNWSH---NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 256 ENSAGKEVMNAYIHVLTL--------------------PAVTITPSEYVSVRPGEPLTLE 295
+ + V + V+++ G+ L L
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243
Query: 296 CEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
C G P P VSW+K +A D + E A +TI V +D+G+Y + KN G
Sbjct: 244 CNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 303
Query: 353 TEEKVITVAVEHRPE 367
+E TV+V PE
Sbjct: 304 SETSDFTVSV-FIPE 317
Score = 118 bits (298), Expect = 3e-30
Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 47/287 (16%)
Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
+D P + S ++C + + W + ++ + D + +
Sbjct: 2 IDPFTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFK 57
Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL 292
G+ L + D G Y I ++ GK+ + + + + L
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK-KIALSATDL 116
Query: 293 TLECEATGR----------PMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESD 339
++ A G V+W I ++ + I +D
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-SDRVKTGVTGEQIWLQINEPTPND 175
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYA 399
G+Y + +K + ++ + E R + + +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN--------------- 220
Query: 400 VGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ P T++ G N+ C+ G P + W
Sbjct: 221 -----------RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256
Score = 95.4 bits (237), Expect = 5e-22
Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 27/211 (12%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP-PNMIAGE----- 140
+ + + QS EG Q+ + WS + + G
Sbjct: 105 VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI 164
Query: 141 TLIINGITKADEGVYICSIQNAQGNV-----------------FQDYASIQVDKREMPRI 183
L IN T D+G Y+ + + + FQ + ++ R+
Sbjct: 165 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRF 240
T G ++ C + G+P P +W++ + + E G
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTI 283
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
N ++T D GKY + +N G E + + V
Sbjct: 284 NGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 158 bits (402), Expect = 3e-44
Identities = 60/294 (20%), Positives = 97/294 (32%), Gaps = 39/294 (13%)
Query: 95 QVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQEQLPPNMIAGE--------TL 142
+ ++ G+ I+C D + W D +E P L
Sbjct: 107 EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGEL 166
Query: 143 IINGITKAD-EGVYICSIQNAQGNVFQDYASIQV------DKREMPRIRIHPNASQTFIV 195
I + D Y C ++ + A+ PR +V
Sbjct: 167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV 226
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----GVLRFNNIATGDEGKY 251
+ C + G P+P+ W + V + + G L + D GKY
Sbjct: 227 AHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285
Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK- 310
C+ NS G E + + V + I P +V G P C+ TG P+ TVSW+K
Sbjct: 286 LCVVNNSVGGESVETVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQYTGNPIKTVSWMKD 344
Query: 311 --YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
I + L I SV++ D G Y+C +N + E + +
Sbjct: 345 GKAIGHSESVL-----------RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 155 bits (394), Expect = 4e-43
Identities = 62/381 (16%), Positives = 112/381 (29%), Gaps = 82/381 (21%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGIT--- 148
+ + IECK S +P I W + + + + + L+
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 70
Query: 149 ---KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
+ VY C +N G++ ++ N + I G+ A I+C++
Sbjct: 71 YRQEVHAQVYACLARNQFGSIISRDVHVRAV--VAQYYEADVN-KEHVIRGNSAVIKCLI 127
Query: 206 EA--GEPSPTQTWIRPDNDGKFGPDVE----VYQELGVLRFNNIATGD-EGKYTCIAENS 258
+ + +W + + F + G L + D Y C ++
Sbjct: 128 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 187
Query: 259 AGKEV---MNAYIHVLTLPAVTITP------SEYVSVRPGEPLTLECEATGRPMPTVSWV 309
E V+T P + P + + + ++L C A G P P+ W
Sbjct: 188 LTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247
Query: 310 KYI--APFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
K+I + + ++ + T I D+G+Y C+ NS G E + V
Sbjct: 248 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-- 305
Query: 366 PEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVK 425
P + P QTV
Sbjct: 306 ---------------------------------------------APLSAKIDPPTQTVD 320
Query: 426 PGDIANIRCSAIGATPISIRW 446
G A C G ++ W
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSW 341
Score = 112 bits (281), Expect = 2e-27
Identities = 52/312 (16%), Positives = 84/312 (26%), Gaps = 67/312 (21%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL---GV 237
P P F A+I+C G P P WIR +DG DV +++ G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKAS-GNPMPEIIWIR--SDGTAVGDVPGLRQISSDGK 60
Query: 238 LRFNNI------ATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGE 290
L F Y C+A N G + + ++ + ++ V G
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRGN 119
Query: 291 PLTLECEA---TGRPMPTVSWVK----YIAPFDRNLERDELTSRAVYTIASVRESDA-GQ 342
++C + VSW P + + I V D
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402
Y+C K+ E ++ S G ++ +
Sbjct: 180 YQCRTKHRLTGETRL--------------SATKGRLVITEPIS----------------- 208
Query: 403 NASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFP-------- 454
S P L + ++ C A G S RW
Sbjct: 209 ------SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 455 SHVVEYNGELRL 466
V + +G L +
Sbjct: 263 DRVKQVSGTLII 274
Score = 64.2 bits (156), Expect = 3e-11
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
++ P Q+ G C+ +P T+ W KD + + + L I + K D
Sbjct: 309 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK-AIGHS---ESVLRIESVKKED 364
Query: 152 EGVYICSIQNAQGNVFQDYASIQV 175
+G+Y C ++N + + + A +++
Sbjct: 365 KGMYQCFVRNDRESA-EASAELKL 387
Score = 36.8 bits (85), Expect = 0.012
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 411 EPPRITLRPVRQ-TVKPGDIANIRCSAIGATPISIRW 446
+ P P + A I C A G I W
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 38
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 160 bits (406), Expect = 7e-44
Identities = 48/348 (13%), Positives = 100/348 (28%), Gaps = 50/348 (14%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----- 140
L PQ++ + +T++ + + + W + +
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRAD 200
+++I +T+ G Y+ IQ+ N V R + + ++
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATN---YTILFTVSIRNTLLYTLRR--PYFRKMENQDA 158
Query: 201 IQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
+ C+ E P P W+ D+ G+ + + + C A N G
Sbjct: 159 LVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEK--VLHELFGTDIRCCARNELG 215
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKY---IAPFD 316
+E + + L T + ++ GEPL + C+A ++W + +
Sbjct: 216 RECTRLF--TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273
Query: 317 RNLERDELTSRAVY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
T+R + ++SV +D G Y C V + +
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG----- 325
Query: 372 SPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT 416
+ +Y S + R T
Sbjct: 326 --------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Score = 159 bits (402), Expect = 3e-43
Identities = 49/307 (15%), Positives = 83/307 (27%), Gaps = 46/307 (14%)
Query: 95 QVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN------------MIAGE 140
Q T Q G + I CK + + W +N+ N MI
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL 290
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRI-HPNASQTFIVGDRA 199
++ + + D G Y CS S V E I + + +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVEKGFINATNSSEDYEIDQYEEF 344
Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
+ P TW + F + + + G+Y AEN
Sbjct: 345 CFSVRFK-AYPQIRCTWTF--SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL 319
+ +++ P V + C + G P+P+ +W K
Sbjct: 402 AQFTKMFTLNIRRKPQV---------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452
Query: 320 E------RDELTSRAVY-------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
E + +R V+ T+ KC NS GT + I +
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Query: 367 EYGPISP 373
+
Sbjct: 513 PFIQDGG 519
Score = 158 bits (401), Expect = 4e-43
Identities = 49/382 (12%), Positives = 98/382 (25%), Gaps = 77/382 (20%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPNMIAGET 141
+S + + R +Q + C S P ++W + E A
Sbjct: 133 FTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
+ + C +N G +I + + P+ + VG+ I
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDL--NQTPQTTLPQL---FLKVGEPLWI 247
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--------YQELGVLRFNNIATGDEGKYTC 253
+C TW + + G E+ + +++A D G YTC
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITP-SEYVSVRPGEPLTLECEATGRPMPTVSWVKYI 312
+ + +A + ++ + T SE + E P +W
Sbjct: 308 SSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR 364
Query: 313 APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
F E+ L + + + G+Y +N K+ T+ +
Sbjct: 365 KSFPC--EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR--------- 413
Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANI 432
P++ + +
Sbjct: 414 --------------------------------------RKPQV--------LAEASASQA 427
Query: 433 RCSAIGATPISIRWQPLQGYFP 454
C + G S W+ P
Sbjct: 428 SCFSDGYPLPSWTWKKCSDKSP 449
Score = 130 bits (329), Expect = 3e-33
Identities = 36/375 (9%), Positives = 96/375 (25%), Gaps = 65/375 (17%)
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
N + Y ++ + + + ++ A+ V +Q
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCAL-------RPQSSGT-VYEAAAVEVDVSASITLQV 70
Query: 204 VLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAGKE 262
+++ + + W+ + P ++ + + + + G+Y ++ A
Sbjct: 71 LVD-APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 263 VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERD 322
+ + + T+ Y + L C + P P V W + ++
Sbjct: 130 TILFTVSIRNTLLYTLRRP-YFRKMENQD-ALVCISESVPEPIVEW--VLCDSQGESCKE 185
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGP----------- 370
E + + E +C +N G E ++ T+ + P+
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245
Query: 371 --------ISPRP------GADILPDGDEYYRPEPEEGEYVYAVG----SNASISCS--- 409
++ L +G+ + + + S+ + + +
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 410 ----------------VEPPRITL--RPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG 451
VE I + + I W +
Sbjct: 306 TCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365
Query: 452 YFPSHVVEYNGELRL 466
FP + +
Sbjct: 366 SFPCEQKGLDNGYSI 380
Score = 89.4 bits (221), Expect = 3e-19
Identities = 28/208 (13%), Positives = 48/208 (23%), Gaps = 31/208 (14%)
Query: 98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN---MIAGETLIINGITKADEG 153
+ + + P W+ + P + G ++ K G
Sbjct: 333 SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS-FPCEQKGLDNGYSISKFCNHKHQPG 391
Query: 154 VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPT 213
YI +N ++ R P++ +ASQ C + G P P+
Sbjct: 392 EYIFHAENDDAQF---TKMFTLNIRRKPQVLAEASASQ---------ASCFSD-GYPLPS 438
Query: 214 QTW-------------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
TW I + Q + N C A NS G
Sbjct: 439 WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG 498
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRP 288
++
Sbjct: 499 TSCETILLNSPGPFPFIQDGGTKHHHHH 526
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 154 bits (391), Expect = 7e-44
Identities = 55/301 (18%), Positives = 94/301 (31%), Gaps = 40/301 (13%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIA-----GET 141
++P E+ + S + C + A + W + +QE A
Sbjct: 3 VTPPGPELVLN-------VSSTFVLTCSGS---APVVWERMSQEPPQEMAKAQDGTFSSV 52
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV---GDR 198
L + +T D G Y C+ +++G + + + + + +A + FI
Sbjct: 53 LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITE 112
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
I C +P T G V + G ++ Y C
Sbjct: 113 ITIPC--RVTDPQLVVTLHE--KKGDVALPVPYDHQRGFSGIF-----EDRSYICKTTIG 163
Query: 259 AGKEVMNAYIHVL---TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----- 310
+ +AY + V++ + V VR GE +TL C G + W
Sbjct: 164 DREVDSDAYYVYRLQVSSINVSVNAVQTV-VRQGENITLMCIVIGNEVVNFEWTYPRKES 222
Query: 311 --YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRP 366
+ P L R++ I S D+G Y C S EK I + V
Sbjct: 223 GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Query: 367 E 367
Sbjct: 283 H 283
Score = 101 bits (252), Expect = 3e-24
Identities = 34/273 (12%), Positives = 63/273 (23%), Gaps = 65/273 (23%)
Query: 183 IRIHPNASQTFI-VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-VLRF 240
+ + P + + V + C S W R + VL
Sbjct: 1 LVVTPPGPELVLNVSSTFVLTC-----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTL 55
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNA---YIHVL---TLPAVTITPSEYVSVRPGEPLTL 294
N+ D G+Y C +S G E YI V ++ + +T+
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
C T P V+ + + D + Y C
Sbjct: 116 PCRVTD-PQLVVTLHEKKGDVALPVPYDH-------QRGFSGIFEDRSYICKTTIGDREV 167
Query: 355 EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR 414
+ +
Sbjct: 168 DSDAYYVYRLQV--------------------------------------------SSIN 183
Query: 415 ITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
+++ V+ V+ G+ + C IG ++ W
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT 216
Score = 59.3 bits (143), Expect = 5e-10
Identities = 26/188 (13%), Positives = 47/188 (25%), Gaps = 45/188 (23%)
Query: 43 ENHEVTVYEGGDAELKC-------------NTYYAPGRWMWLNFYSFLSLII----ICLA 85
E + + E + + C + + F + IC
Sbjct: 101 EELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKT 160
Query: 86 ---------------YLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQ 129
L + V V Q +G +T+ C + +W+ +
Sbjct: 161 TIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Query: 130 EQLPP-----------NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR 178
E L I D G Y C++ + + QD +I +
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH-QDEKAINITVV 279
Query: 179 EMPRIRIH 186
E H
Sbjct: 280 ESGHHHHH 287
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 153 bits (387), Expect = 8e-43
Identities = 54/299 (18%), Positives = 92/299 (30%), Gaps = 38/299 (12%)
Query: 98 PRQQSAPEGSQVTIEC----------KSNDPSATIKWSKDNQEQLPPNM-IAGETLIING 146
A G + +C + ND + W K + + P N + L I
Sbjct: 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIAN 95
Query: 147 ITKADEG-VYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
T D Y+C++ G+ Q + K P I D+ C +
Sbjct: 96 YTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK---PPSCIPETYELGTHDKYGIDLYCGI 152
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQEL-GVLRFNNIATGDEGKYTCIAENSAGKEVM 264
+ TW + N+ + D Y + L +N D G+Y C +
Sbjct: 153 LYAKHYNNITWYK--NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
Query: 265 NAYIHVLTLPAV--------TITPSEYVSVRPGEPLTLECEATGRPMP----TVSWVK-- 310
+ + + V + ++V GEP + C A + + W
Sbjct: 211 DIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS 270
Query: 311 -YIAPFDRNLERDELTSRAVY----TIASVRESDAGQ-YKCIGKNSAGTEEKVITVAVE 363
+I D + +S + +V E G Y C G N + TV +E
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 98.7 bits (245), Expect = 5e-23
Identities = 36/255 (14%), Positives = 70/255 (27%), Gaps = 22/255 (8%)
Query: 165 NVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW-----IRP 219
N +D + K P + +G+ +C + +
Sbjct: 13 NKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNW 72
Query: 220 DNDGKFGPDVEVYQELGVLRFNNIATGDEG-KYTCIAENSAGK-EVMNAYIHVLTLPAVT 277
+ GK + + G L N + D +Y C G H+ P+
Sbjct: 73 EKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI 132
Query: 278 ITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVR 336
E + + L C + ++W K + + + + + I +
Sbjct: 133 PETYE-LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNL-IIHNPE 190
Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEY 396
D+G+Y C + I V+ P IL
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN----------- 239
Query: 397 VYAVGSNASISCSVE 411
+G A+I+C+
Sbjct: 240 -VTIGEPANITCTAV 253
Score = 48.3 bits (114), Expect = 2e-06
Identities = 21/199 (10%), Positives = 42/199 (21%), Gaps = 64/199 (32%)
Query: 261 KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM---------PTVSWVKY 311
++ + A P+ + GEP + +C + V+W K
Sbjct: 16 RDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKI 75
Query: 312 ---IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
P +R ++ +L +Y C G + I +
Sbjct: 76 GKTRRPLNRRVKNGDLWIANY-----TSNDSHRRYLCTVTTKNGDCVQGIVRSHIR---- 126
Query: 369 GPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGD 428
+PP
Sbjct: 127 ------------------------------------------KPPSCIPETYELGTHDKY 144
Query: 429 IANIRCSAI-GATPISIRW 446
++ C + +I W
Sbjct: 145 GIDLYCGILYAKHYNNITW 163
Score = 47.1 bits (111), Expect = 6e-06
Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 21/120 (17%)
Query: 74 YSFLSLIIICLAYLSPQANEVQVT-PRQQSAPEGSQVTIECK-----SNDPSATIKWSKD 127
+ L + Q + ++ + + G I C I W
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269
Query: 128 NQEQLPP-----------NMIAGETLIINGITKADEG-VYICSIQNAQGNVFQDYASIQV 175
+ + I TL +T+ G Y C N + + V
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD---KTLTTTV 326
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 147 bits (372), Expect = 1e-40
Identities = 55/322 (17%), Positives = 99/322 (30%), Gaps = 54/322 (16%)
Query: 96 VTPRQQSAPEGSQVTIECKSN--------DPSATIKWSKDNQEQLPPN------MIAGET 141
+++ EG V + C P + W K++ + P
Sbjct: 23 RHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA 82
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRAD 200
L + + D G Y+C+ +NA D SI++ E + Q +
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASY---CDKMSIELRVFENTDAFLPFISYPQILTLSTSGV 139
Query: 201 IQCVLEA----GEPSPTQTWIRPDNDGKFGPDVEVYQEL---GVLRFNNIATGDEGKYTC 253
+ C + + W + + D E + + L +++A D G Y C
Sbjct: 140 LVCPDLSEFTRDKTDVKIQWYK--DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
Query: 254 IAENSAGKEVMNAYIHV--------LTLPAVTITPSEYVSVRPGEPLTLECEA---TGRP 302
+ + + N + V I+P + +S G LT+ C+ TG P
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257
Query: 303 MPTVSWVK---------------YIAPFDRNLERDELTSRAVYTIASVRESDAG-QYKCI 346
+ T+ W P E +E V D +KC+
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
Query: 347 GKNSAGTEEKVITVAVEHRPEY 368
N+ + TV H +
Sbjct: 318 VHNTLSFQTLRTTVKEHHHHHH 339
Score = 117 bits (293), Expect = 2e-29
Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 56/292 (19%)
Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE------AGEPSPTQTWIRPDNDGKFG 226
R R + + G+ ++C + P TW + D+
Sbjct: 10 AHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP 69
Query: 227 PDVE--VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY- 283
+ E ++ + G L D G Y C N++ + M+ + V + Y
Sbjct: 70 GEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP 129
Query: 284 VSVRPGEPLTLECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY-TIASVRE 337
+ L C + + W K D++ E+ + + V
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVAL 189
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYV 397
DAG Y+C+ + ++ IT ++E R +
Sbjct: 190 EDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK--------------------------- 222
Query: 398 YAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGAT---PISIRW 446
P I + G I C T ++ W
Sbjct: 223 -----------EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW 263
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 143 bits (362), Expect = 6e-40
Identities = 46/266 (17%), Positives = 79/266 (29%), Gaps = 21/266 (7%)
Query: 94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
+ + P S + VT+ C+ S++ +W + + I + D
Sbjct: 4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----PSYRITSASVND 59
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y C + + IQ++ + S+ F G+ ++C +
Sbjct: 60 SGEYRCQRGLSGRS-----DPIQLEIHRGWLLLQVS--SRVFTEGEPLALRCHAWKDKLV 112
Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ R +GK + + L G Y C + V
Sbjct: 113 YNVLYYR---NGK---AFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 272 TLP-AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
L A + S + G +TL CE + + R TS Y
Sbjct: 167 ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS-EY 225
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEK 356
I + R D+G Y C G K
Sbjct: 226 QILTARREDSGLYWCEAATEDGNVLK 251
Score = 103 bits (257), Expect = 4e-25
Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 39/261 (14%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
I + P + + + C + S + W +G R
Sbjct: 2 AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFL---NGTA-----TQTSTPSYRI 52
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT- 299
+ + D G+Y C S + + IH + + S V GEPL L C A
Sbjct: 53 TSASVNDSGEYRCQRGLSGRSDPIQLEIHR---GWLLLQVSSRV-FTEGEPLALRCHAWK 108
Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVIT 359
+ + V + + + TI S G Y C G I+
Sbjct: 109 DKLVYNVLYYR------NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162
Query: 360 VAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRP 419
V V+ ++ + +L G+ ++SC +
Sbjct: 163 VTVKELFPAPVLNASVTSPLL-------------------EGNLVTLSCETKLLLQRPGL 203
Query: 420 VRQTVKPGDIANIRCSAIGAT 440
+R +
Sbjct: 204 QLYFSFYMGSKTLRGRNTSSE 224
Score = 61.5 bits (149), Expect = 9e-11
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 61/175 (34%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
+T+ P +VSV E +TL CE P + W + TS Y I
Sbjct: 2 AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLN----GTATQ----TSTPSYRI 52
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
S +D+G+Y+C S ++
Sbjct: 53 TSASVNDSGEYRCQRGLSGRSD-------------------------------------- 74
Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP-ISIRW 446
I + + L+ + G+ +RC A ++ +
Sbjct: 75 ------------PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Score = 54.2 bits (130), Expect = 2e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQEQLPPNMIAGETLII 144
A + + EG+ VT+ C++ P + +S + I
Sbjct: 169 FPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQI 227
Query: 145 NGITKADEGVYICSIQNAQGNVFQ--DYASIQV 175
+ D G+Y C GNV + +QV
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 142 bits (358), Expect = 1e-38
Identities = 47/310 (15%), Positives = 83/310 (26%), Gaps = 41/310 (13%)
Query: 94 VQVTPRQQSAPEGSQVTIEC-----KSNDPSATIKWSKDNQEQLPPNMIAGE-------- 140
V G+ V + C + + W K I
Sbjct: 17 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 76
Query: 141 ----------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
T+ ++ + DEGVYIC + ++ V + I
Sbjct: 77 PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE 136
Query: 185 IHP--NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE----VYQELGVL 238
++ C G+P +W ++ +
Sbjct: 137 GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRY 196
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
R + CI + + ++V P VTI + + L C+A
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA 256
Query: 299 TGRPMPT-VSWVKYIAPFDRNL-ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
P T W + +L + E +R ++ + S AG Y C N GT
Sbjct: 257 DANPPATEYHWTT----LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSG 312
Query: 357 VITVAVEHRP 366
+ V +
Sbjct: 313 QVEVNITEAA 322
Score = 94.0 bits (233), Expect = 2e-21
Identities = 50/322 (15%), Positives = 80/322 (24%), Gaps = 84/322 (26%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ---TWIRPDNDGKFGPDVEVYQELGV 237
P + N S +G + C PS TW + +G +GV
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGV 72
Query: 238 ---------------------LRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPA 275
+R + + DEG Y C + V+ P
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132
Query: 276 VTITPSEYV----SVRPGEPLTLECE-ATGRPMPTVSWVKYIAPFDRNLERDE----LTS 326
I ++ V + + L C A G+P VSW + E +T
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
+ Y + RE+ CI ++ +T+ V++
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY---------------------- 230
Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVR-QTVKPGDIANIRCSAIGA-TPISI 444
P +T+ + C A
Sbjct: 231 -------------------------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265
Query: 445 RWQPLQGYFPSHVVEYNGELRL 466
W L G P V N L
Sbjct: 266 HWTTLNGSLPKGVEAQNRTLFF 287
Score = 93.3 bits (231), Expect = 3e-21
Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 18/207 (8%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPNMIAGE----- 140
+ Q R + + + C S + P + + W + + I
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD 197
+ +A + C + + S+ ++ + P + I ++
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMD---RFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248
Query: 198 RADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
+ C + P T+ W P Q + I G Y C A
Sbjct: 249 DVKLTCKAD-ANPPATEYHWTT---LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEY 283
N G +++ A+ +
Sbjct: 305 NPIGTRSGQVEVNITEAAALEHHHHHH 331
Score = 27.8 bits (61), Expect = 7.2
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 403 NASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP----ISIRWQPLQGYFPSHVV 458
+P ++ G + CS P + WQ +V
Sbjct: 5 TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64
Query: 459 EYN 461
YN
Sbjct: 65 IYN 67
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 141 bits (356), Expect = 1e-38
Identities = 40/305 (13%), Positives = 79/305 (25%), Gaps = 42/305 (13%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
+ EC P + WSKD + + + + +
Sbjct: 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVS-TEDSPRLEVESKGNKTKMTFKDLGMD 68
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREM--------PRIRIHPNASQTFIVGDRADIQ 202
D G+Y C + + G + KR + P + + + + +
Sbjct: 69 DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFW 128
Query: 203 CVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAE 256
E + + I K D + + + DEG YT +
Sbjct: 129 MQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG--IIEMFMEKLQDEDEGTYTFQLQ 186
Query: 257 NSAGKEVMNAYIHVLTLPAV-----------------TITPSEYVSVRPGEPLTLECEAT 299
+ + + V + L+C+
Sbjct: 187 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA 246
Query: 300 GRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358
T + W K + + D I + DAG Y+ I K+ G ++ +
Sbjct: 247 NIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306
Query: 359 TVAVE 363
+ E
Sbjct: 307 KLVDE 311
Score = 93.5 bits (232), Expect = 2e-21
Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 50/270 (18%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTC 253
+ +C + P +W + + P +EV + + F ++ D G Y+C
Sbjct: 18 VISLNFEC--DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC 75
Query: 254 IAENSAGK-----------EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-TGR 301
++ G + + A H P V + V + + +A
Sbjct: 76 DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLS 135
Query: 302 PMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV 357
V+++ I + + D T + +++ D G Y ++ T
Sbjct: 136 GNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST 195
Query: 358 ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITL 417
+ + + + L E+ R E + P +
Sbjct: 196 VVLVGDVFKK------------LQKEAEFQRQEWIRK----------------QGPHF-V 226
Query: 418 RPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
+ V ++C I W
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVW 256
Score = 58.8 bits (142), Expect = 9e-10
Identities = 21/151 (13%), Positives = 35/151 (23%), Gaps = 18/151 (11%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAV 329
+ T V L EC+ P SW K LE + ++
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED-SPRLEVESKGNKTK 59
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
T + D G Y C ++ G + E + + + P
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEE---------LKRLLALSHEHKFPTVP 110
Query: 390 EPEEGEYVYAVGSNASISCSVE----PPRIT 416
E E ++
Sbjct: 111 VKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141
Score = 56.2 bits (135), Expect = 6e-09
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 96 VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN----MIAGE-TLIINGIT 148
V V ++CK + I W KD +E + + G TL+I +
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKDGICTLLITEFS 284
Query: 149 KADEGVYICSIQNAQGNV 166
K D G+Y +++ +G
Sbjct: 285 KKDAGIYEVILKDDRGKD 302
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 134 bits (339), Expect = 2e-37
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 13/194 (6%)
Query: 180 MPRIRIHPN-ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
MP I + + T G+ C G P P +W R + + L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA 298
NI D G Y C A N AG++ A++ V P + +E +TL C+A
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE--NGQVTLVCDA 118
Query: 299 TGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---------TIASVRESDAGQYKCIGKN 349
G P+P ++W + + F L R I V+ SD+G+Y C +
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 350 SAGTEEKVITVAVE 363
G +K + + +E
Sbjct: 179 RIGGHQKSMYLDIE 192
Score = 111 bits (280), Expect = 6e-29
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 22/188 (11%)
Query: 98 PRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKAD 151
+A G ++T C+++ P I W ++ + + N + L + I +D
Sbjct: 11 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSD 69
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y+C N G +D + P I N +T + + C E GEP
Sbjct: 70 GGPYVCRATNKAG---EDEKQAFLQVFVQPHIIQLKN--ETTYENGQVTLVCDAE-GEPI 123
Query: 212 PTQTWIRPDNDGKFGPD---------VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
P TW R + F V+ L ++ D G+Y C A + G
Sbjct: 124 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH 183
Query: 263 VMNAYIHV 270
+ Y+ +
Sbjct: 184 QKSMYLDI 191
Score = 87.6 bits (217), Expect = 3e-20
Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 49/177 (27%)
Query: 272 TLPAVTITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
++PA+++ + + GE +T C A+G P P +SW + + N + S
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
T+ ++ SD G Y C N AG +EK + V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV---------------------------- 92
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P I + +T + C A G I W+
Sbjct: 93 -------------------FVQPHII-QLKNETTYENGQVTLVCDAEGEPIPEITWK 129
Score = 53.3 bits (128), Expect = 2e-08
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-------------T 141
+ + ++ E QVT+ C +P I W + +
Sbjct: 99 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 142 LIINGITKADEGVYICSIQNAQGNV 166
L I + +D G Y C + G
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGH 183
Score = 34.4 bits (79), Expect = 0.045
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
S+ + + T + G+ C A G+ +I W + ++ + N EL
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 465 RL 466
+
Sbjct: 61 TV 62
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 137 bits (346), Expect = 3e-37
Identities = 53/309 (17%), Positives = 89/309 (28%), Gaps = 46/309 (14%)
Query: 93 EVQVT-PRQQSAPEGSQVTIECKSNDPS------ATIKWSKDNQEQ-------------- 131
+V V P Q G VT+ C P+ + + W++ +
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 132 ----------LPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
+ +L + G+ DEG Y C ++V P
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV--LAKP 118
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQELG 236
+ +CV G P TW P+ G
Sbjct: 119 QNTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKE--VMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
+ + D TC E+ + ++ ++ + V P V+I+ + TL
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 295 ECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
C+A P PT +W L + A I V + C N+ G
Sbjct: 238 TCDARSNPEPTGYNWST----TMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGA 293
Query: 354 EEKVITVAV 362
+ +TV V
Sbjct: 294 RQAELTVQV 302
Score = 104 bits (261), Expect = 2e-25
Identities = 51/319 (15%), Positives = 90/319 (28%), Gaps = 79/319 (24%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDG-------KFGPDVEV 231
+ + +GD + C L+ T TW R G GP
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 232 YQEL-------------GVLRFNNIATGDEGKYTCIAENS-AGKEVMNAYIHVLTLPAVT 277
+ L LR + DEG YTC+ G ++ ++ VL P T
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT 121
Query: 278 ITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFD-----RNLERDELTSRAVYT 331
+ V + C +T GRP ++W + +T +++
Sbjct: 122 AEVQK-VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ + D C ++ + + +++TV +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------------------------- 212
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPV-RQTVKPGDIANIRCSAIGA-TPISIRWQPL 449
VY PP +++ + A + C A P W
Sbjct: 213 -----VYY------------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255
Query: 450 QGYFPSHVVEYNGELRLGP 468
G P V +L + P
Sbjct: 256 MGPLPPFAVAQGAQLLIRP 274
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 137 bits (346), Expect = 4e-37
Identities = 51/302 (16%), Positives = 81/302 (26%), Gaps = 40/302 (13%)
Query: 97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
+ C N+ TI W KD+ + E L
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA-SQTFIVGDRADIQCVLE- 206
D G Y C ++N+ + + S + + E Q V + C
Sbjct: 71 VEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129
Query: 207 ----AGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
P W D ++ L N+A G YTC A + +
Sbjct: 130 FFKNENNELPKLQW-YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 263 VMNAYIHVL---------TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--- 310
+ T P + +E + V G + L C TG+ W
Sbjct: 189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGS 248
Query: 311 YIAPFDRNLERDELTSR-----------AVYTIASVRESD-AGQYKCIGKNSAGTEEKVI 358
I D L D + V I+ + + C KN+ G + I
Sbjct: 249 VIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308
Query: 359 TV 360
+
Sbjct: 309 QL 310
Score = 112 bits (280), Expect = 7e-28
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 33/253 (13%)
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG--KFGPDVEVYQEL 235
RE I + + C L E T TW + D+ ++Q
Sbjct: 9 REEKIILVSS-------ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPL 292
L F D G Y C+ NS+ + + ++ + +
Sbjct: 62 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDG 121
Query: 293 TLEC------EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCI 346
L C + +P + W K P + + + +V E G Y C
Sbjct: 122 GLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI-VMNVAEKHRGNYTCH 180
Query: 347 GKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASI 406
+ ++ IT +E RP I+ P +GS +
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRP--VIV---------SPANETMEVDLGSQIQL 229
Query: 407 SCSVE---PPRIT 416
C+V
Sbjct: 230 ICNVTGQLSDIAY 242
Score = 89.4 bits (221), Expect = 6e-20
Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 32/214 (14%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK-------SNDPSATIKWSKDNQEQLPPN---MI 137
P +Q P + C N+ ++W KD + L N
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 138 AGETLIINGITKADEGVYICSIQNAQGNV-FQDYASIQV-----DKREMPRIRIHPNASQ 191
+ LI+ + + G Y C + I+ +K P I N +
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQE---------LGV 237
+G + + C + G+ S W ++D G D + + V
Sbjct: 220 EVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278
Query: 238 LRFNNIATGD-EGKYTCIAENSAGKEVMNAYIHV 270
L + I + + +TC A+N+ G + +
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 56.7 bits (136), Expect = 5e-09
Identities = 20/200 (10%), Positives = 42/200 (21%), Gaps = 57/200 (28%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDE--LTSRAVYTIASVR 336
+ E C T++W K + + E+ + +
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEY 396
D+G Y C+ +NS+ I+ + +
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA--------------------- 109
Query: 397 VYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCS------AIGATPISIRW---- 446
+Q + + C ++W
Sbjct: 110 ----------------------IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC 147
Query: 447 QPLQGYFPSHVVEYNGELRL 466
+PL H L +
Sbjct: 148 KPLLLD-NIHFSGVKDRLIV 166
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 131 bits (332), Expect = 2e-36
Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD------NDGKFGPDVEVYQE 234
++ I P+ VG+ C + +W P+ N + V +
Sbjct: 3 LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV-VWNDDD 60
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
L N D G Y C+ G + + + P+ + GE
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAV 119
Query: 294 LECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
+ C+ PT+ W + R + S I ++++D G Y+C G+
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDV--RFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 351 AGTEEKVITVAVE 363
A E + V
Sbjct: 178 ARGEINFKDIQVI 190
Score = 128 bits (322), Expect = 6e-35
Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 16/191 (8%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---------MIAGET 141
+V + P Q G C+ + I W N E+L PN T
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
L I D G+Y C + G + ++++ + + P Q F G+ A I
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI--FQKLMFKNAP-TPQEFKEGEDAVI 120
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
C + PT W D DV L+ I DEG Y C A
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 261 KEVMNAYIHVL 271
E+ I V+
Sbjct: 180 GEINFKDIQVI 190
Score = 84.1 bits (208), Expect = 5e-19
Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 55/181 (30%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM-PTVSWVKY----IAPFD-RNLERDELTS 326
+ V I PS+ + GE C+ G +SW ++P R
Sbjct: 2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTE-EKVITVAVEHRPEYGPISPRPGADILPDGDE 385
+ TI + DAG YKC+ GT+ E + V +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
+ P Q K G+ A I C + + P +I
Sbjct: 98 ------------------------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133
Query: 446 W 446
W
Sbjct: 134 W 134
Score = 37.9 bits (88), Expect = 0.003
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIG-ATPISIRWQ 447
++ + P + + G+ C G A I W
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWF 38
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 132 bits (334), Expect = 1e-35
Identities = 44/292 (15%), Positives = 86/292 (29%), Gaps = 36/292 (12%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIING 146
+ P +E+ V G +++ C ++W+ I
Sbjct: 15 IHPAQSELIVEA-------GDTLSLTCIDP---DFVRWTFKTYFNEMVENKKN-EWIQEK 63
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE 206
G Y CS N +SI V R+ ++ + A ++C L
Sbjct: 64 AEATRTGTYTCSNSNGLT------SSIYVFVRDPAKLFLVGL-PLFGKEDSDALVRCPL- 115
Query: 207 AGEPSPTQTWIRPDNDG-KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN 265
+ I D + G+ N C A+ +
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSD 175
Query: 266 AY-IHVLTL----PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK--------- 310
+ + V P V++ + ++ ++ G+ T+ C W+K
Sbjct: 176 KFTLKVREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234
Query: 311 YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ + + TI+S R D+G + C N+ G+ T+ V
Sbjct: 235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 109 bits (272), Expect = 6e-27
Identities = 36/268 (13%), Positives = 79/268 (29%), Gaps = 43/268 (16%)
Query: 46 EVTVYEGGDAELKCN-----TYYAPGRWMWLNFYSFLSLII-----------ICLA---- 85
E+ V G L C + + + I C
Sbjct: 21 ELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80
Query: 86 ----YLS-PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--- 136
Y+ ++ + E S + C ++ + + + + LP ++
Sbjct: 81 TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFV 140
Query: 137 --IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK--REMPRIRIHPNASQT 192
I N C+ Q + D +++V + + +P + + S
Sbjct: 141 PNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPE-TSHL 199
Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV---------YQELGVLRFNNI 243
GD + C ++ S W++ + + V+ Y+ L ++
Sbjct: 200 LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA 259
Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVL 271
D G + C A N+ G + + V+
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 102 bits (255), Expect = 1e-24
Identities = 32/269 (11%), Positives = 59/269 (21%), Gaps = 61/269 (22%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P I + GD + C W + V +
Sbjct: 13 PSIHPAQS-ELIVEAGDTLSLTC-----IDPDFVRWTFKTY-----FNEMVENKKNEWIQ 61
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
G YTC N + Y+ V + + + + C T
Sbjct: 62 EKAEATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFLVGLPLF-GKEDSDALVRCPLTD 117
Query: 301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV-RESDAGQYKCIGKNSAGTEE-KVI 358
+ S ++ +A TI +V R +C +
Sbjct: 118 PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKF 177
Query: 359 TVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLR 418
T+ V + P +++
Sbjct: 178 TLKVREAIKA-------------------------------------------IPVVSVP 194
Query: 419 PVRQTVKPGDIANIRCSAIGA-TPISIRW 446
+K GD + C+ T ++ W
Sbjct: 195 ETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223
Score = 57.4 bits (138), Expect = 3e-09
Identities = 23/176 (13%), Positives = 39/176 (22%), Gaps = 60/176 (34%)
Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
+ P++ SE + V G+ L+L C V W F + +
Sbjct: 10 PSPPSIHPAQSELI-VEAGDTLSLTCIDPD----FVRWT-----FKTYFNEMVENKKNEW 59
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
+ G Y C N + V
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYV--------------------------------- 86
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+V +P ++ L + K A +RC
Sbjct: 87 -----FVR------------DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL 125
Score = 33.2 bits (75), Expect = 0.16
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 402 SNASIS-CSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEY 460
S S S PP I V+ GD ++ C +RW + YF V
Sbjct: 1 SQPSASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWT-FKTYFNEMVENK 55
Query: 461 NGELRL 466
E
Sbjct: 56 KNEWIQ 61
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 125 bits (315), Expect = 7e-34
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 13/191 (6%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK----FGPDVEVYQE 234
+ P I + +V + A C +E P P +W R + F + +
Sbjct: 6 KAPVITTPLE-TVDALVEEVATFMCAVE-SYPQPEISWTR---NKILIKLFDTRYSIREN 60
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHVLTLPAVTITPSEYVSVRPGEPLT 293
+L ++ D+G Y C A N G V + + V P +T P V + G
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPIN-VKIIEGLKAV 119
Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
L C G P P+VSW+K + N R + I +V++ DAGQY+C+ KNS GT
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALREN-SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 354 EE-KVITVAVE 363
K++ + VE
Sbjct: 179 AYSKLVKLEVE 189
Score = 115 bits (291), Expect = 1e-30
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETL 142
P+A + A T C P I W+++ + G+ L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
I + +D+G+Y C+ N G + ++QV + P+I P + I G +A +
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQV--KMKPKITRPPI-NVKIIEGLKAVLP 121
Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK- 261
C G P P+ +WI+ D+ + + V + G LR +N+ D G+Y C+A+NS G
Sbjct: 122 CTTM-GNPKPSVSWIKGDSALRENSRIAVLES-GSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 262 --EVMNAYIHVL 271
+++ + V
Sbjct: 180 YSKLVKLEVEVF 191
Score = 83.6 bits (207), Expect = 7e-19
Identities = 42/200 (21%), Positives = 61/200 (30%), Gaps = 57/200 (28%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P +T V E T C P P +SW + I FD + +
Sbjct: 8 PVITTPLET-VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI--RENGQLL 64
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
TI SV +SD G Y C N G
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGG------------------------------------- 87
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW---- 446
AV S ++ + P+IT P+ + G A + C+ +G S+ W
Sbjct: 88 --------AVESCGALQVKM-KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138
Query: 447 QPLQGYFPSHVVEYNGELRL 466
L+ V +G LR+
Sbjct: 139 SALREN-SRIAVLESGSLRI 157
Score = 40.5 bits (95), Expect = 4e-04
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNG 462
+ P IT ++A C+ I W ++ + + + NG
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 129 bits (326), Expect = 2e-33
Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 17/200 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---------VEV 231
P I N +T + + C E GEP P TW R + F V+
Sbjct: 2 PHIIQLKN--ETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 232 YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
L ++ D G+Y C A + G + Y+ + P G P
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ-TIYYSWEGNP 117
Query: 292 LTLECEATGRPMPTVSWVKYIAPFD----RNLERDELTSRAVYTIASVRESDAGQYKCIG 347
+ + C+ P ++ W + NL+ + + IA ++D G+Y C
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 348 KNSAGTEEKVITVAVEHRPE 367
N GT + +A+ P
Sbjct: 178 TNHIGTRFQEYILALADVPS 197
Score = 112 bits (281), Expect = 2e-27
Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 57/294 (19%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE-------------T 141
+ + ++ E QVT+ C +P I W + +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
L I + +D G Y C + G S+ +D P+ + G+ +I
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGH---QKSMYLDIEYAPKFISNQT-IYYSWEGNPINI 120
Query: 202 QCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
C ++ P + W + N +L + D G+Y C A
Sbjct: 121 SCDVK-SNPPASIHWRRDKLVLPAKNTTNL--KTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 256 ENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV------ 309
N G + + P P ++ + VS+
Sbjct: 178 TNHIGTRFQEYILALAD--------------VPSSPYGVKIIELSQTTAKVSFNKPDSHG 223
Query: 310 -----KYIAPFDRNLERDELTSRAV-----YTIASVRESDAGQYKCIGKNSAGT 353
Y R+ + ++ + + + N G
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277
Score = 87.6 bits (217), Expect = 6e-19
Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 56/179 (31%)
Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY------ 330
I + + +TL C+A G P+P ++W + + F L R
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62
Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
I V+ SD+G+Y C + G +K + + +E
Sbjct: 63 SSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------------ 98
Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P+ G+ NI C P SI W
Sbjct: 99 -----------------------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHW 134
Score = 65.6 bits (160), Expect = 8e-12
Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 63/251 (25%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---------TLIIN 145
+ EG+ + I C ++P A+I W +D LP L I
Sbjct: 105 SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLV-LPAKNTTNLKTYSTGRKMILEIA 163
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
+ D G Y C+ N G + + + P++ + + + +
Sbjct: 164 PTSDNDFGRYNCTATNHIGT---RFQEYIL------ALADVPSSPYGVKIIELSQTTAKV 214
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVY----QELGVLRFNNIAT--------------GD 247
++ +PD+ G G + Y +E+ + + +
Sbjct: 215 ---------SFNKPDSHG--GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNT 263
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVS 307
+ A N G+ + TLP +P + +P + +S
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF----------KLS 312
Query: 308 WVKYIAPFDRN 318
K D
Sbjct: 313 ITK---QDDGG 320
Score = 30.2 bits (68), Expect = 1.4
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P I + +T + C A G I W+
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWK 35
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 122 bits (309), Expect = 4e-33
Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 15/192 (7%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVYQEL 235
+ ++ I + VG+ C GEP + K V+
Sbjct: 2 LLQVTISLS-KVELSVGESKFFTCTAI-GEPESIDWYNP--QGEKIISTQRVVVQKEGVR 57
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVM-NAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
L N D G Y C A ++ G+ + + S + GE +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP-QEFKQGEDAEV 116
Query: 295 ECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
C + P P VSW+ + N R + + I ++ +SD G Y+C G+ A
Sbjct: 117 VCRVSSSPAPAVSWLYHNEEVTTISDN--RFAMLANNNLQILNINKSDEGIYRCEGRVEA 174
Query: 352 GTEEKVITVAVE 363
E + V
Sbjct: 175 RGEIDFRDIIVI 186
Score = 115 bits (289), Expect = 3e-30
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 12/188 (6%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI------AGETLIIN 145
+V ++ + G C + +P + ++ ++ + + L I
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 63
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
D G+Y C +A+G + +++ + R + Q F G+ A++ C +
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLEI--YQKLTFREVV-SPQEFKQGEDAEVVCRV 120
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
P+P +W+ + + D L+ NI DEG Y C A E+
Sbjct: 121 S-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 265 NAYIHVLT 272
I V+
Sbjct: 180 FRDIIVIV 187
Score = 86.4 bits (214), Expect = 7e-20
Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 51/177 (28%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVY 330
L VTI+ S+ V + GE C A G P + + + + R+
Sbjct: 2 LLQVTISLSK-VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 331 TIASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
TI + DAG Y+C ++ G T+E + + +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-------------------------- 94
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ Q K G+ A + C + ++ W
Sbjct: 95 ---------------------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
Score = 36.3 bits (84), Expect = 0.011
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQP 448
++T+ + + G+ C+AIG + P
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNP 38
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 122 bits (308), Expect = 4e-33
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 17/190 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRP----DNDGKFGPDVEVYQELG 236
++ P T G + C +E G P W++ N + V +G
Sbjct: 3 LKLMGAPV-KLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
L ++ D G+Y C E+ E+ ++ V +P T+ P + ++V P P L
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAPFQLS 119
Query: 296 CEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
CEA G P P T+ W + + + + + + + + C N G
Sbjct: 120 CEAVGPPEPVTIVWWR-------GTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLA 172
Query: 355 E-KVITVAVE 363
+ TV ++
Sbjct: 173 SSRTATVHLQ 182
Score = 102 bits (255), Expect = 1e-25
Identities = 31/186 (16%), Positives = 51/186 (27%), Gaps = 22/186 (11%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
P + + +G V + C I+W KD L +
Sbjct: 7 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 66
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLE 206
+ ++D G Y C +++ + V +P + P + C
Sbjct: 67 VERSDAGRYWCQVEDGGETEISQPVWLTV--EGVPFFTVEPK-DLAVPPNAPFQLSCEAV 123
Query: 207 AGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK-EVM 264
G P P W R K G N ++C A N G
Sbjct: 124 -GPPEPVTIVWWR--GTTKIGGPAP-----SPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Query: 265 NAYIHV 270
A +H+
Sbjct: 176 TATVHL 181
Score = 89.9 bits (223), Expect = 3e-21
Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 54/180 (30%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
+ P + ++V G+P+ L C G P + WVK + D+ + E
Sbjct: 3 LKLMGAPVK-LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
++ SV SDAG+Y C ++ TE + + + VE
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------------------------- 96
Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRWQ 447
P T+ P V P + C A+G P++I W
Sbjct: 97 ----------------------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW 134
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPL----QGYFPSHVVEYNGE 463
++ PV+ TV G + CS G I+W + Q Y P + G
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 464 LRL 466
L L
Sbjct: 62 LSL 64
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 122 bits (307), Expect = 1e-32
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 11/195 (5%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LG 236
E P IR T +G+ A + C + G P P W R + ++ +
Sbjct: 6 EAPGIRKEMK-DVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT--ITPSEYVSVRPGEPLTL 294
L DEG YTCIA N G+ ++ + + P E G L L
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRL 123
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSR---AVYTIASV-RESDAGQYKCIGKNS 350
GRP+P ++W + E + + + +V R++ AG+YK N
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNS-ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 351 AGTEEKVITVAVEHR 365
GT + ++ V ++ +
Sbjct: 183 FGTVDAILDVEIQDK 197
Score = 97.8 bits (244), Expect = 6e-24
Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 18/187 (9%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGIT 148
+ + G + C+ P IKW + +E L + ++ + TL +
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKE-LIQSRKYKMSSDGRTHTLTVMTEE 71
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA--SQTFIVGDRADIQCVLE 206
+ DEGVY C N G V S ++ + P+ VG + +
Sbjct: 72 QEDEGVYTCIATNEVGEV---ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY- 127
Query: 207 AGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIAT-GDEGKYTCIAENSAGKEV 263
G P P TW + ++ + L N+ GKY N G
Sbjct: 128 IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187
Query: 264 MNAYIHV 270
+ +
Sbjct: 188 AILDVEI 194
Score = 76.3 bits (188), Expect = 3e-16
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 24/148 (16%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYT 331
P + + V+ + GE L C+ GRP+P + W ++ R + T
Sbjct: 8 PGIRKEMKD-VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ + + D G Y CI N G E + ++ P P P
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP---QFHPGY---------------P 108
Query: 392 EEGEYVYAVGSNASISCSVE---PPRIT 416
+ +Y AVGS + P +T
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Score = 56.6 bits (137), Expect = 2e-09
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGET- 141
+PQ + + GS + + P + W + L + + E
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL-LQNSENITIENTEHY 158
Query: 142 ---LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR 178
++ N K G Y + N G V +++ +
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQDK 197
Score = 35.8 bits (83), Expect = 0.016
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
+ S E P I T K G+ A + C +G I+W
Sbjct: 2 AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWY 42
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 122 bits (308), Expect = 1e-32
Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 34/220 (15%)
Query: 164 GNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG 223
G+ + +I ++P S+ + G + C G P W + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPE-SKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEI 59
Query: 224 KFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPA------- 275
G L FN + D G Y C N+ E + + V +P
Sbjct: 60 PNGNT-------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Query: 276 --------VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR 327
+ + P+ + PG L L+C A G P+P W K N ++
Sbjct: 113 GVSESKLQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFK-------NELPLTHETK 164
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRP 366
+Y + V G Y C N +++ K + + ++
Sbjct: 165 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204
Score = 112 bits (282), Expect = 5e-29
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 26/207 (12%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
P+ +++ V P ++ G V + C++ P +W K N+E +P LI N +
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE-IPNG--NTSELIFNAV 72
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQV-------------DKREMPRIRIHPNASQTFI 194
D G Y+C + N F ++ + V +I + P SQ +
Sbjct: 73 HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP-TSQKLM 131
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
G +QCV G P P W + N+ + + + + +G Y C
Sbjct: 132 PGSTLVLQCVAV-GSPIPHYQWFK--NELPLTHETK-----KLYMVPYVDLEHQGTYWCH 183
Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPS 281
N + ++ P
Sbjct: 184 VYNDRDSQDSKKVEIIIDELNNLGHPD 210
Score = 93.8 bits (233), Expect = 3e-22
Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 45/199 (22%)
Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
S+ ++ V +T+ P +V G+ + L C ATG P W K
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPES-KAVLAGQFVKLCCRATGHPFVQYQWFK------- 54
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPG 376
+ + + +V DAG Y C N+ E + + V PE S
Sbjct: 55 MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 377 ADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSA 436
++ +I + P Q + PG ++C A
Sbjct: 115 SE--------------------------------SKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 437 IGATPISIRW----QPLQG 451
+G+ +W PL
Sbjct: 143 VGSPIPHYQWFKNELPLTH 161
Score = 67.2 bits (164), Expect = 4e-13
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 71 LNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ 129
L+ + +S ++ V P Q GS + ++C + P +W K+
Sbjct: 98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157
Query: 130 EQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
L + ++ + +G Y C + N + + I +D E+ + N
Sbjct: 158 P-LTHE--TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID--ELNNLGHPDNK 212
Query: 190 SQT 192
QT
Sbjct: 213 EQT 215
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 121 bits (305), Expect = 2e-32
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 12/190 (6%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVL 238
M R + Q F G+ A++ C + P+P +W+ + + D L
Sbjct: 2 MLTFREVVS-PQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTIT---PSEYVSVRPGEPLTLE 295
+ NI DEG Y C A E+ I V+ I+ S + GE +T
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 296 CEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
C A+G P P +SW + I ++ + + T T+ ++ SD G Y C N AG
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNKAG 176
Query: 353 TEEKVITVAV 362
+EK + V
Sbjct: 177 EDEKQAFLQV 186
Score = 117 bits (295), Expect = 4e-31
Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITK 149
Q +G + C+ + P+ + W N+E + M+A L I I K
Sbjct: 7 EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK 66
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLEAG 208
+DEG+Y C + D+ I V P I + + T G+ C G
Sbjct: 67 SDEGIYRCEGRVEARGEI-DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-G 124
Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
P P +W R + + L NI D G Y C A N AG++ A++
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 269 HVL 271
V
Sbjct: 185 QVF 187
Score = 82.9 bits (205), Expect = 1e-18
Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 57/203 (28%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRA 328
++ S + GE + C + P P VSW+ + N R + +
Sbjct: 1 SMLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN--RFAMLANN 57
Query: 329 VYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
I ++ +SD G Y+C G+ A E + I V V P
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA------------------- 98
Query: 387 YRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ + T + G+ C A G+ +I W
Sbjct: 99 --------------------------ISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 447 ----QPLQGYFPSHVVEYNGELR 465
+ ++ + N EL
Sbjct: 133 FRNGKLIEENEKYILKGSNTELT 155
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 121 bits (306), Expect = 2e-32
Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 24/205 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN--------DGKFGPDVEVY 232
+ + + + C G SP W + +
Sbjct: 2 GSVYTAQ-SDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 233 QEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVRPG 289
+ F+++ D G+YTC+ G+ IH+ L P T S SV G
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119
Query: 290 EPLTLEC-EATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY-------TIASVRES 338
L C E G P SW K + D R + S V
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 339 DAGQYKCIGKNSAGTEEKVITVAVE 363
D+G+Y C +N GT + ++
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 121 bits (304), Expect = 4e-32
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 27/206 (13%)
Query: 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--------------IA 138
V PE + + C S S ++W +
Sbjct: 4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
+ + +T+ D G Y C + G + + SI + P + +G+R
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGE-VSIHLTVLVPPSKPTISV-PSSVTIGNR 121
Query: 199 ADIQCVLEAGEPSPTQTWIRPDND----------GKFGPDVEVYQELGVLRFNNIATGDE 248
A + C G P +W + + + G L F+ + D
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLP 274
G+Y C A+N G + + H+ +
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 78.5 bits (193), Expect = 5e-17
Identities = 32/184 (17%), Positives = 49/184 (26%), Gaps = 57/184 (30%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
+V S+ V V E + L C +G P V W + R
Sbjct: 2 GSVYTAQSD-VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 329 VY-----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDG 383
+ T +SV D G+Y C+ G +++ +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT-------------------- 100
Query: 384 DEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAI-GATPI 442
V PP V +V G+ A + CS G+ P
Sbjct: 101 -------------VLV------------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS 135
Query: 443 SIRW 446
W
Sbjct: 136 EYSW 139
Score = 55.7 bits (134), Expect = 4e-09
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPNMIAGE---------- 140
S G++ + C + P + W KD L +
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165
Query: 141 ----TLIINGITKADEGVYICSIQNAQGNV 166
LI + +T D G Y C QN G
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Score = 33.4 bits (76), Expect = 0.088
Identities = 7/59 (11%), Positives = 18/59 (30%)
Query: 413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH 471
+ V + + C+ G + + W+ +QG + V + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 121 bits (304), Expect = 4e-32
Identities = 39/206 (18%), Positives = 61/206 (29%), Gaps = 23/206 (11%)
Query: 180 MPRIRIH-PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND--------GKFGPDVE 230
M + +H + + C G SP W D K E
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 231 VYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-PAVTITPSEYVSVR 287
+ F ++ D G YTC+ G + ++ L P T + S
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 288 PGEPLTLECEAT-GRPMPTVSWVK---YIAPFDRNLERDELTSRAVY------TIASVRE 337
G L C G P +W K + ++ +S + +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVE 363
SD G+Y C +N GT V +E
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 119 bits (299), Expect = 1e-31
Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 26/201 (12%)
Query: 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM--------------IA 138
V + + PE + V + C S S ++W D +
Sbjct: 7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
+ +T+ D G Y C + GN + + +++ P + +G+R
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKLIVLVPPSKPTVNI-PSSATIGNR 124
Query: 199 ADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVY---QELGVLRFNNIATGDEG 249
A + C + G P TW + + Y G L F+ ++ D G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 250 KYTCIAENSAGKEVMNAYIHV 270
+Y+C A N G + + + +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205
Score = 81.5 bits (201), Expect = 6e-18
Identities = 31/187 (16%), Positives = 47/187 (25%), Gaps = 57/187 (30%)
Query: 273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVK----------YIAPFDRNLER 321
+ +VT+ SE V + P+ L C +G P V W Y + E
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
T SV D G Y C+ G + V +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI------------------ 103
Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
+ PP + + G+ A + CS +P
Sbjct: 104 ---------------------------VLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136
Query: 442 -ISIRWQ 447
W
Sbjct: 137 PSEYTWF 143
Score = 55.4 bits (133), Expect = 5e-09
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 20/99 (20%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPN--------------M 136
SA G++ + C P + W KD +P N
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI-VMPTNPKSTRAFSNSSYVLN 167
Query: 137 IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L+ + ++ +D G Y C +N G S V
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYGT---PMTSNAV 203
Score = 29.5 bits (66), Expect = 1.9
Identities = 7/60 (11%), Positives = 16/60 (26%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH 471
+ + + + C+ G + + W+ QG V N +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 119 bits (299), Expect = 1e-31
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 15/191 (7%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
PRI +QC L + W + +G R
Sbjct: 4 PRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTK---NGVELTATRKNASNMEYR 59
Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT 299
N D G+Y C+ + NA I V P +T + G+ + C++
Sbjct: 60 INKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRS-ENKNEGQDAMMYCKSV 117
Query: 300 GRPMPTVSWVK---YIAPFDRNLE-RDELTSRAVYT---IASVR-ESDAGQYKCIGKNSA 351
G P P W K + N R + ++ YT I +++ D G+Y+C NS
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 352 GTEEKVITVAV 362
G+ + V
Sbjct: 178 GSASVSTVLRV 188
Score = 104 bits (260), Expect = 3e-26
Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 20/190 (10%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN---DPSATIKWSKDNQEQLPPN--MIAGETLIINGIT 148
+ + VT++C W+K+ E L + IN
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE-LTATRKNASNMEYRINKPR 64
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
D G Y C A+ ++ + P I H S+ G A + C G
Sbjct: 65 AEDSGEYHCVYHFVSA----PKANATIEVKAAPDITGHK-RSENKNEGQDAMMYCKSV-G 118
Query: 209 EPSPTQTWIR-----PDNDGKFGPDVEVYQE--LGVLRFNNIA-TGDEGKYTCIAENSAG 260
P P W + + + + L N+ T D G+Y C A NS G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 261 KEVMNAYIHV 270
++ + V
Sbjct: 179 SASVSTVLRV 188
Score = 73.7 bits (181), Expect = 2e-15
Identities = 26/176 (14%), Positives = 44/176 (25%), Gaps = 54/176 (30%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFDRNLERDELTSRAVYT 331
P + + E + P+TL+C T W K + Y
Sbjct: 4 PRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME---YR 59
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
I R D+G+Y C+ + + T+ V+
Sbjct: 60 INKPRAEDSGEYHCV-YHFVSAPKANATIEVK---------------------------- 90
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P IT + G A + C ++G W+
Sbjct: 91 -------------------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWR 127
Score = 52.9 bits (127), Expect = 2e-08
Identities = 28/168 (16%), Positives = 43/168 (25%), Gaps = 48/168 (28%)
Query: 47 VTVYEGGDAELKCNTYYAPG---RWMWL----------NFYSFLSLII-----------I 82
+ L+CN + W S + I
Sbjct: 13 IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYH 72
Query: 83 CLAYLSPQAN-----EVQVTP------RQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE 130
C+ + EV+ P R ++ EG + CKS P W K
Sbjct: 73 CVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132
Query: 131 QLPPNMIA------------GETLIINGITKADEGVYICSIQNAQGNV 166
+ E I+N D G Y C+ N+ G+
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA 180
Score = 37.1 bits (86), Expect = 0.005
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATP--ISIRW----QPLQGYFPSHVVEYNGELR 465
PRI ++C+ ++ + W L + N E R
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT---ATRKNASNMEYR 59
Query: 466 L 466
+
Sbjct: 60 I 60
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 119 bits (300), Expect = 1e-31
Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 17/196 (8%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ------E 234
P + + A + C + G P P W R + D Y+
Sbjct: 5 PHFKEELR-NLNVRYQSNATLVCKVT-GHPKPIVKWYR--QGKEIIADGLKYRIQEFKGG 60
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT----ITPSEYVSVRPGE 290
L ++ D Y A N G A + V + + V GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 291 PLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
++++ +G+P P ++W K I + ++ V DAG Y
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 348 KNSAGTEEKVITVAVE 363
KN G ++K + + V
Sbjct: 181 KNRFGIDQKTVELDVA 196
Score = 99.0 bits (247), Expect = 3e-24
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 18/189 (9%)
Query: 97 TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMI--------AGETLIINGI 147
R + S T+ CK P +KW + +E + + LII +
Sbjct: 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCV 204
T D VY N G+V AS++V+ K +P+ + + G+ I+
Sbjct: 70 TDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGM-GAVHALRGEVVSIKIP 127
Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAENSAGK 261
G+P P TW + + +V ++ N + D G Y A+N G
Sbjct: 128 FS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186
Query: 262 EVMNAYIHV 270
+ + V
Sbjct: 187 DQKTVELDV 195
Score = 79.0 bits (195), Expect = 3e-17
Identities = 33/182 (18%), Positives = 51/182 (28%), Gaps = 55/182 (30%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
P ++VR TL C+ TG P P V W + + + D L R
Sbjct: 5 PHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYR----QGKEIIADGLKYRIQEFKG 59
Query: 331 -----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
IASV + DA Y+ N G+ ++ VE +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK------------------ 101
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
+ P+ G++ +I+ G I
Sbjct: 102 ------------------------IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 446 WQ 447
WQ
Sbjct: 138 WQ 139
Score = 59.7 bits (145), Expect = 1e-10
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 81 IICLAYLSPQANEVQVTPRQ------QSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLP 133
+ A L + P+ A G V+I+ S P I W K + +
Sbjct: 88 VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ-DLID 146
Query: 134 PN----MIAGET----LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
N +I + + NG+ + D G Y+ +N G Q + V
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDV 195
Score = 32.0 bits (73), Expect = 0.25
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P V+ A + C G ++W
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWY 39
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 119 bits (299), Expect = 2e-31
Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 18/205 (8%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQEL 235
PR P QT + G A C G+P P W + ++ +F
Sbjct: 5 TPPRFTRTPV-DQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 236 GVLRFNNIATG-DEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS------EYVSVRP 288
VLR + T DE Y C+A N+ G+ ++ + VL + + V
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 289 GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYT--IASVRESDAGQY 343
T+ C A+G P P ++W K + + N +L S ++ I ESD G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 344 KCIGKNSAGTEE-KVITVAVEHRPE 367
+C+ NSAGT + V
Sbjct: 183 ECVATNSAGTRYSAPANLYVRGTKH 207
Score = 102 bits (255), Expect = 2e-25
Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 25/200 (12%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
TP Q+ G + C++ DP I W+K ++ + I
Sbjct: 11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPL 70
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRADI 201
T DE +Y C N G + + V R P I + P + A +
Sbjct: 71 RTPRDEAIYECVASNNVGEISVS-TRLTVLREDQIPRGFPTIDMGP-QLKVVERTRTATM 128
Query: 202 QCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
C G P P TW + N+ + + +G L+ D+GKY C+A
Sbjct: 129 LCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRS-ESIGALQIEQSEESDQGKYECVA 186
Query: 256 ENSAGKEV-MNAYIHVLTLP 274
NSAG A ++V
Sbjct: 187 TNSAGTRYSAPANLYVRGTK 206
Score = 86.4 bits (214), Expect = 1e-19
Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 45/182 (24%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
T P T TP + + G + C+ATG P P + W K ++ + + S
Sbjct: 3 GETPPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 327 RAVYTIASVR-ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
+V I +R D Y+C+ N+ G + V +
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR--------------- 106
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
P I + P + V+ A + C+A G I
Sbjct: 107 -------------------------GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141
Query: 446 WQ 447
W
Sbjct: 142 WF 143
Score = 59.1 bits (143), Expect = 2e-10
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 78 SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNM 136
L ++ + + + P+ + T+ C S +P I W KD + +
Sbjct: 95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDTSN 153
Query: 137 IAGE----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
G L I ++D+G Y C N+ G + A++ V
Sbjct: 154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 119 bits (299), Expect = 3e-31
Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 28/227 (12%)
Query: 166 VFQDYASIQVDKREMPRIRIHP---NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND 222
+ +D+ S + + P + +C G P PT W++ N
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLK--NG 57
Query: 223 GKFGPD-----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL----TL 273
+F + +V + L ++ D+G YTC+ EN G ++ V+
Sbjct: 58 KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
P + S G + C+ P + W+K++ D L V
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 331 ----------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
+ +V E+DAG+Y C N G + + V + +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224
Score = 114 bits (287), Expect = 1e-29
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 95 QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN--------MIAGETLIIN 145
++ R + P + V C + +P T++W K+ +E +LI+
Sbjct: 23 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIME 81
Query: 146 GITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
+ +D+G Y C ++N G++ Y + R P ++ A+ + +VG + C
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 141
Query: 205 LEAGEPSPTQTWIRPD--NDGKFGPDVEVYQEL-----------GVLRFNNIATGDEGKY 251
+ + P WI+ N K+GPD Y ++ VL N+ D G+Y
Sbjct: 142 VY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 200
Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
C N G+ +A++ VL E
Sbjct: 201 ICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231
Score = 90.7 bits (225), Expect = 6e-21
Identities = 32/197 (16%), Positives = 46/197 (23%), Gaps = 47/197 (23%)
Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--- 310
+AE+ + N T +V + C A G PMPT+ W+K
Sbjct: 1 MAEDFVSENSNNKRAPYWTNT--EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58
Query: 311 YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
R + SV SD G Y C+ +N G+ + V R
Sbjct: 59 EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS---- 114
Query: 371 ISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIA 430
P P + G
Sbjct: 115 --------------------------------------RHRPILQAGLPANASTVVGGDV 136
Query: 431 NIRCSAIGATPISIRWQ 447
C I+W
Sbjct: 137 EFVCKVYSDAQPHIQWI 153
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 118 bits (296), Expect = 4e-31
Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 15/195 (7%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFGPDVEVYQEL--GV 237
P G + C P + W+ + D + G
Sbjct: 9 PFPPEER-PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL---------PAVTITPSEYVSVRP 288
L N+ D+G Y+C + + + + + L PA + + V
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 289 GEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
G+ +TLEC A G P+P + W K + P + TS AV I +++ D G Y+C +
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 349 NSAGTEEKVITVAVE 363
N G ++ + V+
Sbjct: 186 NIRGKDKHQARIYVQ 200
Score = 109 bits (274), Expect = 4e-28
Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 23/202 (11%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIEC---KSNDPSATIKWSKDNQEQLPP------N 135
YL P E + EG + + C + +W +
Sbjct: 5 GYLDPFPPE---ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV 61
Query: 136 MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV-------DKREMPRIRIHPN 188
L I + +D+G Y C + + I + K I +
Sbjct: 62 SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
++G ++C G P P W + E+ VL+ NI DE
Sbjct: 122 -DVYALMGQNVTLECFAL-GNPVPDIRWRK--VLEPMPSTAEISTSGAVLKIFNIQLEDE 177
Query: 249 GKYTCIAENSAGKEVMNAYIHV 270
G Y C AEN GK+ A I+V
Sbjct: 178 GIYECEAENIRGKDKHQARIYV 199
Score = 74.2 bits (182), Expect = 2e-15
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 48/201 (23%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVK--YIAPFDRNLERDELTSRAV 329
P E V V+ G+ + L C+ + W+ + + R +
Sbjct: 9 PFPPEERPE-VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
IA+V SD G Y C + + T+ P
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP---------------- 111
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW--- 446
P I ++ G + C A+G IRW
Sbjct: 112 ---------------------YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV 150
Query: 447 -QPLQGYFPSHVVEYNGELRL 466
+P+ + + L++
Sbjct: 151 LEPMPST--AEISTSGAVLKI 169
Score = 65.3 bits (159), Expect = 1e-12
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 75 SFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLP 133
F+ LI I P ++ V + A G VT+EC + +P I+W K + +P
Sbjct: 97 KFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-MP 155
Query: 134 PN---MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+G L I I DEG+Y C +N +G +D ++
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRG---KDKHQARI 197
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 123 bits (309), Expect = 6e-31
Identities = 52/368 (14%), Positives = 95/368 (25%), Gaps = 67/368 (18%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQE---QLPPNMIAGETLIING 146
V++ P P G +T+ C+ + T+ + +E + A T +
Sbjct: 89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV 148
Query: 147 ITKADEGVYICSIQNAQGN-----VFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
+ C + A Q+ +P + + V + +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIATGDEGKY--TCIAENS 258
C L+ P D + P V + ++ DEG TC
Sbjct: 209 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN 318
+ + + + PA + ++ V G +T++CEA R T++ V
Sbjct: 269 NQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEAHPRAKVTLNGVP-------- 319
Query: 319 LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
L RA + + E + + C + E R YGP
Sbjct: 320 --AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-------- 369
Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
P T C A G
Sbjct: 370 ---------------------------------RLDERDCPGNWTWPENSQQTPMCQAWG 396
Query: 439 ATPISIRW 446
++
Sbjct: 397 NPLPELKC 404
Score = 120 bits (302), Expect = 5e-30
Identities = 40/286 (13%), Positives = 77/286 (26%), Gaps = 40/286 (13%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
+ +Q T+ C + A + + +Q P ++
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248
Query: 148 TKA---DEGVY--ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
DEG C++ + V P + G ++
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQ---ETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVK 304
Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
C P T GP + L + ++C A +
Sbjct: 305 C---EAHPRAKVTLNG-VPAQPLGPRAQ-------LLLKATPEDNGRSFSCSATLEVAGQ 353
Query: 263 VMN----AYIHVLTLPAVTI-TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR 317
+++ + VL P + + T C+A G P+P + +K
Sbjct: 354 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------- 406
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
D + +V G Y C +++ G + +TV V
Sbjct: 407 ----DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 86.5 bits (213), Expect = 2e-18
Identities = 41/328 (12%), Positives = 75/328 (22%), Gaps = 68/328 (20%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
+ P+ G + C +P P + +
Sbjct: 2 TSVSPS-KVILPRGGSVLVTCSTSCDQP-MLLGIETP-----LPKKELLLPGNNRKVYEL 54
Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-- 300
++ + C + G+ ++ V P G+ LTL C+ G
Sbjct: 55 SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA 114
Query: 301 -RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE----- 354
R TV ++ R E T+ R+ + C + +
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 355 ---EKVITVAVEHRPEYGPIS----------------------PRPGADI-LPDGDEYYR 388
+ P P P A + L GD+
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 389 PEP------------------EEGEYVY-AVGSNASISCSVE-------PPRITLRPVRQ 422
P +EG + S P + +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP 293
Query: 423 TVKPGDIANIRCSAIGATPISIRWQPLQ 450
V G ++C A +++ P Q
Sbjct: 294 EVSEGTEVTVKCEAHPRAKVTLNGVPAQ 321
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 115 bits (291), Expect = 2e-30
Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 20/198 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVY 232
+ P S + G A + + G P P +W I +
Sbjct: 4 QAPTFTQPL-QSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGV--QISFS 59
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL---PAVTITPSEYVSVRPG 289
L + + G+Y+ A N +G+ A + V P ++VR G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS-MTVRQG 118
Query: 290 EPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKC 345
+ L+ TG P P V + + I + ++ IA D+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG--DLYSLLIAEAYPEDSGTYSV 176
Query: 346 IGKNSAGTEEKVITVAVE 363
NS G + V+
Sbjct: 177 NATNSVGRATSTAELLVQ 194
Score = 110 bits (278), Expect = 1e-28
Identities = 49/196 (25%), Positives = 70/196 (35%), Gaps = 15/196 (7%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE----QLPPNMIAGE- 140
++ QA + EGS T E S P + W +D Q LP I+
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM-PRIRIHPNASQTFIVG 196
L I +TKA+ G Y N G A + V P S T G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRL-QSMTVRQG 118
Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIATGDEGKYTCI 254
+ +Q + G P+P + R + + D ++ QE L L D G Y+
Sbjct: 119 SQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 255 AENSAGKEVMNAYIHV 270
A NS G+ A + V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 83.2 bits (206), Expect = 8e-19
Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 49/178 (27%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLER-DELTSRAV 329
P T V V G T E +G P+P VSW + I+ + RA
Sbjct: 6 PTFTQPLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
TI +V ++++G+Y N +G + V+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET----------------------- 101
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
PP R TV+ G ++ G +++
Sbjct: 102 ---------------------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY 138
Score = 38.2 bits (89), Expect = 0.002
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
+ + P T V G A G + W
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWF 40
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 117 bits (294), Expect = 2e-30
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 23/217 (10%)
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGPDVEVYQELGVLRF 240
R+ + +C G P+P+ +W++ +++ + L
Sbjct: 19 RMDKK-LLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM 76
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVL----TLPAVTITPSEYVSVRPGEPLTLEC 296
++ D G YTC+ EN G + VL P + + G + C
Sbjct: 77 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 136
Query: 297 EATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--------------TIASVRESDAGQ 342
+ P + W+K++ + D V +A+V E D G+
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADI 379
Y C N G EK ++V
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAG 233
Score = 116 bits (293), Expect = 3e-30
Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 29/225 (12%)
Query: 95 QVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLIING 146
++ + + P + V C + +P+ +I W K+ +E + I G +L++
Sbjct: 19 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMES 78
Query: 147 ITKADEGVYICSIQNAQGNVFQDYA-SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
+ +D G Y C ++N G++ Q Y + P ++ A+QT ++G + C +
Sbjct: 79 VVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 138
Query: 206 EAGEPSPTQTWIRPD--NDGKFGPDVEVYQEL------------GVLRFNNIATGDEGKY 251
+ P W++ N K GPD Y + LR N++ D G+Y
Sbjct: 139 Y-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 252 TCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLEC 296
C A N G ++ V A V E ++
Sbjct: 198 LCRATNFIGVAEKAFWLSVHGPRAAEEEL-----VEADEAGSVHH 237
Score = 84.6 bits (209), Expect = 9e-19
Identities = 30/166 (18%), Positives = 44/166 (26%), Gaps = 45/166 (27%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDA 340
++V + C A G P P++SW+K R + + SV SD
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 341 GQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAV 400
G Y C+ +N G+ + T+ V R
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLERS---------------------------------- 110
Query: 401 GSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P P QT G C I+W
Sbjct: 111 --------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Score = 33.4 bits (76), Expect = 0.10
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 402 SNASISCSVEPPRIT----LRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
++ P T + V + RC A G SI W
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 50
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 118 bits (298), Expect = 2e-30
Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 13/198 (6%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----G 236
P + + A + C + G P P W R + QE
Sbjct: 5 PHFKEEL-RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS----EYVSVRPGEPL 292
L ++ D Y A N G A + V + + + V GE +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 293 TLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
+++ +G+P P ++W K I + ++ V DAG Y KN
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 350 SAGTEEKVITVAVEHRPE 367
G ++K + + V P+
Sbjct: 183 RFGIDQKTVELDVADVPD 200
Score = 105 bits (263), Expect = 2e-25
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 34/234 (14%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLI 143
+ R + S T+ CK + P +KW + +E + + + LI
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN----ASQTFIVGDRA 199
I +T D VY N G+V + ++ +I + + + G+
Sbjct: 66 IASVTDDDATVYQVRATNQGGSV---SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE---LGVLRFNNIATGDEGKYTCIAE 256
I+ G+P P TW + + +V ++ N + D G Y A+
Sbjct: 123 SIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
N G + + V P P ++ R ++W +
Sbjct: 182 NRFGIDQKTVELDVAD--------------VPDPPRGVKVSDVSRDSVNLTWTE 221
Score = 80.2 bits (198), Expect = 7e-17
Identities = 29/177 (16%), Positives = 47/177 (26%), Gaps = 47/177 (26%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER----DELTSRAV 329
P ++VR TL C+ TG P P V W + + + +
Sbjct: 5 PHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
IASV + DA Y+ N G+ ++ VE
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA----------------------- 100
Query: 390 EPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ P+ G++ +I+ G I W
Sbjct: 101 -------------------KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138
Score = 37.4 bits (87), Expect = 0.007
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P V+ A + C G ++W
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWY 39
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 119 bits (300), Expect = 2e-30
Identities = 54/324 (16%), Positives = 84/324 (25%), Gaps = 59/324 (18%)
Query: 97 TPRQQSAPEGSQVTIECK------------SNDPSATIKWSKDNQEQLPPNMIA------ 138
T RQ E I+C ++ T+ W Q++ I
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 139 -----GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQT 192
+ L D G Y C ++N + ++V K + +
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKL 131
Query: 193 FIVGDRADIQC----VLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
+I I C PT TW K V E L F +
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYM--GCYKIQNFNNVIPEGMNLSFLIALISNN 189
Query: 249 GKYTCIA----ENSAGKEVMNAYIHVLTLPAVTITP-------SEYVSVRPGEPLTLECE 297
G YTC+ + V+ P + P PGE L + C
Sbjct: 190 GNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT 249
Query: 298 AT----GRPMPTVSWVK------------YIAPFDRNLERDELTSRAVYTIASVRESD-A 340
V W I + ++ T + +I V D
Sbjct: 250 VYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLK 309
Query: 341 GQYKCIGKNSAGTEEKVITVAVEH 364
Y C +++ G K V +
Sbjct: 310 RSYVCHARSAKGEVAKAAKVKQKV 333
Score = 92.6 bits (229), Expect = 7e-21
Identities = 38/246 (15%), Positives = 64/246 (26%), Gaps = 44/246 (17%)
Query: 194 IVGDRADIQCVLE----------AGEPSPTQTWIRPDNDGKF-------GPDVEVYQELG 236
+ A I+C L A T W D P+ + +E
Sbjct: 20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD 79
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPLT 293
VL F D G YTC+ N+ + + V+ + +P +
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 294 LECE-----ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
+ C PT++W + + + S+ G Y C+
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVT 197
Query: 349 ----NSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNA 404
+ +TV V P+ + Y G
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVP-------------PVIHSPNDHVVYEKEPGEEL 244
Query: 405 SISCSV 410
I C+V
Sbjct: 245 LIPCTV 250
Score = 89.5 bits (221), Expect = 8e-20
Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 32/215 (14%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK------SNDPSATIKWSKDNQEQLPPN--MIAG 139
N P + E I C + TI W + N + G
Sbjct: 117 DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG 176
Query: 140 ETLIINGITKADEGVYICSIQNAQGNV-FQDYASIQVDKREMPRIRIHP-------NASQ 191
L ++ G Y C + + F ++ V P+ + P +
Sbjct: 177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVY 236
Query: 192 TFIVGDRADIQCV---LEAGEPSPTQTWIRPDNDGKFGPDVEVYQE------------LG 236
G+ I C + W E
Sbjct: 237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQ 296
Query: 237 VLRFNNIATGDEG-KYTCIAENSAGKEVMNAYIHV 270
+L + + D Y C A ++ G+ A +
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 58.3 bits (140), Expect = 2e-09
Identities = 23/215 (10%), Positives = 47/215 (21%), Gaps = 62/215 (28%)
Query: 274 PAVTITPSEYVSVRPGEPLTLEC-----------EATGRPMPTVSWVKYIAPFDRNLERD 322
+ + V EP ++C T+ W D +
Sbjct: 7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66
Query: 323 ELTSRAVYT-------IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
+ +D G Y C+ +N+ + + V +
Sbjct: 67 FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS-------- 118
Query: 376 GADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCS 435
+ P +Y I+C N+
Sbjct: 119 ---------CFNSPMKLPVHKLYIEYGIQRITC---------------------PNVDGY 148
Query: 436 AIGATPISIRW----QPLQGYFPSHVVEYNGELRL 466
+ +I W +Q ++V+ L
Sbjct: 149 FPSSVKPTITWYMGCYKIQN--FNNVIPEGMNLSF 181
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 120 bits (301), Expect = 2e-30
Identities = 46/307 (14%), Positives = 81/307 (26%), Gaps = 68/307 (22%)
Query: 103 APEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIA----------------------- 138
+G V + C S S W NQ ++ N +
Sbjct: 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
LII + D YIC +++ + V ++ + N+ + G
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEV------------QLLVFGLTANSDTHLLQGQS 113
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
+ SP+ P + Q L + + D G +TC +
Sbjct: 114 LTLTLESP-PGSSPSVQCRSPRG--------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 164
Query: 259 AGKEVMNAYIHVLTL--PAVTITPSEYVSVRPGEPLT-----------LECEATGRPMP- 304
K I VL + + E V PL L +A
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224
Query: 305 ---TVSW------VKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
T VK + + +L A + + +G + G
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 356 KVITVAV 362
+ + + V
Sbjct: 285 QEVNLVV 291
Score = 101 bits (253), Expect = 6e-24
Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 37/192 (19%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL------------------ 235
GD ++ C + S W + G +
Sbjct: 7 KKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
L N+ D Y C E+ + + L +T + + G+ LTL
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEE---------VQLLVFGLTANSDTHLLQGQSLTL 116
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
E+ P+V ++ + + +++ + D+G + C +
Sbjct: 117 TLESPPGSSPSVQCR-------SPRGKNIQGGKTL-SVSQLELQDSGTWTCTVLQNQKKV 168
Query: 355 EKVITVAVEHRP 366
E I + V
Sbjct: 169 EFKIDIVVLAFQ 180
Score = 57.1 bits (137), Expect = 4e-09
Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 52/175 (29%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVK-----------------YIAPFDRNLERDEL 324
+ V + G+ + L C A+ + W DR R L
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 325 TSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD 382
+ + I +++ D+ Y C ++ E + ++ +L
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKE----------EVQLLVFGLTANSDTHLLQ- 110
Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT-LRPVRQTVKPGDIANIR 433
G + +++ P + P + ++ G ++
Sbjct: 111 ------------------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVS 147
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 117 bits (293), Expect = 4e-30
Identities = 36/274 (13%), Positives = 72/274 (26%), Gaps = 40/274 (14%)
Query: 105 EGSQVTIECKSND----PSATIKWSKDNQEQLPPNMIAGETLIINGITKA-----DEGVY 155
+Q T+ C + A + + +Q P ++
Sbjct: 17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76
Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
C++ + V P + G ++C P T
Sbjct: 77 TCAVILGNQSQ---ETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVKC---EAHPRAKVT 129
Query: 216 WIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN----AYIHVL 271
G + L + ++C A ++++ + VL
Sbjct: 130 L--------NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Query: 272 TLPAVTITPS-EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
P + + T C+A G P+P + +K D +
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-----------DGTFPLPIG 230
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
+V G Y C +++ G + +TV V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 87.8 bits (217), Expect = 1e-19
Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 19/179 (10%)
Query: 95 QVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
V + EG++VT++C+++ P A + + + L P L++ + +
Sbjct: 102 NVILTKPEVSEGTEVTVKCEAH-PRAKVTLNGVPAQPLGPRA----QLLLKATPEDNGRS 156
Query: 155 YICSIQN-AQGNVFQDYASIQVDKREMPRIRIHPN-ASQTFIVGDRADIQCVLEAGEPSP 212
+ CS G + + ++ PR+ + T+ + C G P P
Sbjct: 157 FSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLP 215
Query: 213 TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
++ DG L + + EG Y C A ++ G+ ++VL
Sbjct: 216 ELKCLK---DGT--------FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 85.9 bits (212), Expect = 5e-19
Identities = 39/242 (16%), Positives = 72/242 (29%), Gaps = 36/242 (14%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P++ + + V + + C L+ P D + P V + +
Sbjct: 7 PQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA 62
Query: 241 NNIAT-GDEG--KYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
+ T DEG + TC + + + + PA + ++ V G +T++CE
Sbjct: 63 SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCE 121
Query: 298 ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKV 357
A R T++ V L RA + + E + + C +
Sbjct: 122 AHPRAKVTLNGVP----------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 171
Query: 358 ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE---PPR 414
E R YGP G + + S + C P
Sbjct: 172 KNQTRELRVLYGPRLDER---------------DCPGNWTWPENSQQTPMCQAWGNPLPE 216
Query: 415 IT 416
+
Sbjct: 217 LK 218
Score = 52.4 bits (125), Expect = 9e-08
Identities = 21/186 (11%), Positives = 42/186 (22%), Gaps = 53/186 (28%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGR---PMPTVSWVKYIAPFDRNLERDELTS 326
VL + + V T+ C G V + + +
Sbjct: 1 VLPATPPQLVSPRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 58
Query: 327 RAVYTI-ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
A ++ + + + C ++E + TV + P
Sbjct: 59 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP------------------- 99
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIR 445
P + L V G ++C A +++
Sbjct: 100 --------------------------APNVILTK--PEVSEGTEVTVKCEAHPRAKVTLN 131
Query: 446 WQPLQG 451
P Q
Sbjct: 132 GVPAQP 137
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 115 bits (289), Expect = 5e-30
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK----FGPDVEVYQELG 236
P I P +Q VG A C G+P P+ W + +GK V ++ G
Sbjct: 7 PEIIRKPQ-NQGVRVGGVASFYCAAR-GDPPPSIVWRK---NGKKVSGTQSRYTVLEQPG 61
Query: 237 VLRFNNI----ATGDEGKYTCIAENSAGKEV-MNAYIHVLTL-------PAVTITPSEYV 284
+ I A D+ Y C+AEN G V +A + + P +T P V
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYK 344
+ G + + C+A G P P + W+K D + R L + I + RE D G+Y+
Sbjct: 122 -IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL-QIENSREEDQGKYE 179
Query: 345 CIGKNSAGTEE 355
C+ +NS GTE
Sbjct: 180 CVAENSMGTEH 190
Score = 102 bits (255), Expect = 3e-25
Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 23/206 (11%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN------MIAGETLIINGIT 148
P+ Q G + C + DP +I W K+ + ++ + + I I
Sbjct: 11 RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGK-KVSGTQSRYTVLEQPGGISILRIE 69
Query: 149 KA----DEGVYICSIQNAQGNVFQDYASIQV-----DKREMPRIRIHPNASQTFIVGDRA 199
D+ Y C +N G+ A++ + P I P ++ VG
Sbjct: 70 PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP-GTRVIEVGHTV 128
Query: 200 DIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQ-ELGVLRFNNIATGDEGKYTCIAENS 258
+ C G P+P WI+ N K Y + G L+ N D+GKY C+AENS
Sbjct: 129 LMTCKAI-GNPTPNIYWIK--NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENS 185
Query: 259 AGKEVMNA-YIHVLTLPAVTITPSEY 283
G E A ++V T +
Sbjct: 186 MGTEHSKATNLYVKVRRVGTKHHHHH 211
Score = 72.5 bits (178), Expect = 7e-15
Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 56/208 (26%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS 326
P + P VR G + C A G P P++ W K ++ L
Sbjct: 3 GAHPPEIIRKPQN-QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV--LEQ 59
Query: 327 RAVYTIASVRE----SDAGQYKCIGKNSAGT-EEKVITVAVEHRPEYGPISPRPGADILP 381
+I + D Y+C+ +N G T+ + +
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA----------- 108
Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
P IT P + ++ G + C AIG
Sbjct: 109 -----------------------------GFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 442 ISIRW----QPLQGYFPSHVVEYNGELR 465
+I W + P + ++ +G L+
Sbjct: 140 PNIYWIKNQTKVDMSNPRYSLK-DGFLQ 166
Score = 66.7 bits (163), Expect = 7e-13
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 78 SLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN- 135
+L I + P + G V + CK+ +P+ I W K+ + + +
Sbjct: 97 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK-VDMSN 155
Query: 136 ---MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
+ L I + D+G Y C +N+ G ++ V + H
Sbjct: 156 PRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVRRVGTKHH 208
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 116 bits (291), Expect = 1e-29
Identities = 43/295 (14%), Positives = 87/295 (29%), Gaps = 33/295 (11%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN-----DPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
V + ++ G T+ + T W+KD+Q P+ TL + T
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ----PHENNTATLTVADAT 60
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
+ G Y ++Q+ + +++ E+ I ++ ++
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVN-ITEPQHFYVSSQTDVELHATVKFS 119
Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYI 268
G DV + G YT + +A
Sbjct: 120 GGKTPADNYELHYSWSKGEDV--IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Query: 269 HVLTLP-AVTITPSEYVSVRPGEPLTLEC--------EATGRPMPTVSWVKYI------- 312
++ V E +V G ++L +++G P T+ + Y+
Sbjct: 178 KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLS 237
Query: 313 -----APFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ LE +T S D ++ C+ K E++ + VA
Sbjct: 238 PTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292
Score = 81.4 bits (200), Expect = 3e-17
Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 21/194 (10%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ---TWIRPDNDGKFGPDVEVYQELGV 237
+ I N + F+ GD + + EP P+ TW + D
Sbjct: 3 FTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK---DD-----QPHENNTAT 53
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL--TLPAVTITPSEYVSVRPGEPLTLE 295
L + + + G Y +++ + + + ++ V IT ++ V + L
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 296 CE---ATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
+ G+ + Y ++ + + TI G Y +
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDV----IDTTQDITIQEFTADKNGVYTVKVWGESE 169
Query: 353 TEEKVITVAVEHRP 366
+ +
Sbjct: 170 DSAASASTKIMLAT 183
Score = 56.8 bits (136), Expect = 5e-09
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMP---TVSWVKYIAPFDRNLERDELTSRAV 329
V+I ++ G+ TL G P+P T +W K P + + A
Sbjct: 3 FTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE--------NNTAT 53
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
T+A +AG YK +++ V + E P + +
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Score = 33.3 bits (75), Expect = 0.16
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATP----ISIRWQ 447
++++ ++ GD + + G P ++ W
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWT 41
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 116 bits (292), Expect = 3e-29
Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 17/198 (8%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND-GKFGPDVEVYQELGV 237
+P +++ + + VGD ++C +E G WI + + LG+
Sbjct: 157 GVPTLKVQV-PNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKSGGLPSLGL 214
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
N + + TC AEN G+ ++ ++V +V + +
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ-----LHTAVEMHHWCIPFS 269
Query: 298 ATGRPMPTVSWVK---------YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
G+P P++ W+ +I +E + + G Y +
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 349 NSAGTEEKVITVAVEHRP 366
N G I A P
Sbjct: 330 NPFGQASASIMAAFMDNP 347
Score = 105 bits (263), Expect = 2e-25
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 24/200 (12%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP-----NMIAGETLI 143
++V S G V + C+ W EQ + + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
N + + C +N G + S+QV+ +++H I
Sbjct: 217 ANVTSDLNRKNVTCWAENDVG---RAEVSVQVNVSFPASVQLHTAVEM-----HHWCIPF 268
Query: 204 VLEAGEPSPTQTWIRPD---------NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCI 254
++ G+P+P+ W+ P G LR N + G YT +
Sbjct: 269 SVD-GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Query: 255 AENSAGKEVMNAYIHVLTLP 274
A N G+ + + P
Sbjct: 328 AANPFGQASASIMAAFMDNP 347
Score = 74.8 bits (183), Expect = 7e-15
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 1/116 (0%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV-R 336
SV G+ + L C+ GR + W+ + + T+A+V
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS 221
Query: 337 ESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
+ + C +N G E + V V + +P P
Sbjct: 222 DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPS 277
Score = 32.0 bits (72), Expect = 0.44
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P + ++ +V GD +RC G W
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGW 192
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 112 bits (282), Expect = 5e-29
Identities = 66/222 (29%), Positives = 89/222 (40%), Gaps = 29/222 (13%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR---PDNDGKFGP 227
S++ + PRI HP+ G+ A + C E G P+PT W + K P
Sbjct: 1 GSLRQEDF-PPRIVEHPS-DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDP 57
Query: 228 DVEVYQ-ELGVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITP 280
G L F I G DEG Y C+A N G+ V +A + V L
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117
Query: 281 SEYVSVRPGEPLTLECEAT-GRPMPTVSWVK---YIAPFDRN--LERDELTSRAVYTIAS 334
V V GEP +EC+ G P PT+SW K + D + +L I
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM------ITY 171
Query: 335 VRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRP 375
R+SDAG+Y C+G N G E +V + V RP
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPS---FVKAA 210
Score = 104 bits (260), Expect = 6e-26
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQ--EQLPPNMIAGETLIING------ 146
P +G T+ CK+ P+ TI+W K + E + + L+ +G
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 147 -----ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
++ DEGVY+C +N G AS++V R +P + VG+ A +
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-AILRDDFRQNP-SDVMVAVGEPAVM 131
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAENSAG 260
+C G P PT +W + + E G L D GKY C+ N G
Sbjct: 132 ECQPPRGHPEPTISWKK--DGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 261 K-EVMNAYIHVLTLPAVTITPS 281
+ E A + VL P+ +
Sbjct: 190 ERESEVAELTVLERPSFVKAAA 211
Score = 77.5 bits (191), Expect = 1e-16
Identities = 44/207 (21%), Positives = 64/207 (30%), Gaps = 61/207 (29%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
P + PS+ + V GEP TL C+A GRP PT+ W K D R L S +
Sbjct: 10 PRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 329 VY----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
++ D G Y C+ +N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE------------------------------- 97
Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP-IS 443
AV +AS+ ++ P V G+ A + C P +
Sbjct: 98 --------------AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143
Query: 444 IRW----QPLQGYFPSHVVEYNGELRL 466
I W PL + G+L +
Sbjct: 144 ISWKKDGSPLDDK-DERITIRGGKLMI 169
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
S+ PPRI P V G+ A + C A G +I W
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 111 bits (278), Expect = 1e-28
Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 20/191 (10%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-------PDNDGKFGPDVEV 231
E +P + T G ++C L+ P W+R D+ P E
Sbjct: 1 EESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 232 YQEL----GVLRFNNIATGDEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSV 286
Q+ LR ++ D G+Y C+ V Y+ + LP P + +V
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED-RTV 118
Query: 287 RPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
P L C+A G P P + W++ L ++ + + C
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQ----DAVPLATAPGHGPQ-RSLHVPGLNKTSSFSC 173
Query: 346 IGKNSAGTEEK 356
N+ G
Sbjct: 174 EAHNAKGVTTS 184
Score = 103 bits (257), Expect = 9e-26
Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 28/195 (14%)
Query: 96 VTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQ---------------EQLPPNMIA 138
P + G T+ C + + W +D Q E + I
Sbjct: 7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIV 66
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
L I + +D G Y C + + + +P P +T
Sbjct: 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL--EGLPYFLEEPE-DRTVAANTP 123
Query: 199 ADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAEN 257
++ C + G P P W++ D + L + ++C A N
Sbjct: 124 FNLSCQAQ-GPPEPVDLLWLQ---DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAHN 177
Query: 258 SAGKEV-MNAYIHVL 271
+ G A I VL
Sbjct: 178 AKGVTTSRTATITVL 192
Score = 75.3 bits (185), Expect = 6e-16
Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 62/188 (32%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVK-----------YIAPFDRNLER 321
P ++ G TL C+ P V W++ E+
Sbjct: 3 SPFVGNPGN-ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVITVAVEHRPEYGPISPRPGADIL 380
D+ + I S++ SD GQY+C+ T + V +E
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----------------- 104
Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA- 439
P P +TV N+ C A G
Sbjct: 105 ------------------------------GLPYFLEEPEDRTVAANTPFNLSCQAQGPP 134
Query: 440 TPISIRWQ 447
P+ + W
Sbjct: 135 EPVDLLWL 142
Score = 35.6 bits (82), Expect = 0.018
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSA-IGATPISIRW 446
E P T G +RC + P + W
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHW 37
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 111 bits (279), Expect = 1e-28
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 18/205 (8%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--G 236
+ PRI HP + A + C +E G+P PT W + + G
Sbjct: 8 QSPRIIEHPT-DLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 237 VLRFNNIATG----DEGKYTCIAENSAGKEV-MNAYIHVLTLPAVTITPSEYVSVRPGEP 291
L F G D G+Y C+A+N G+ V +A + + L + V GE
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGET 125
Query: 292 LTLEC-EATGRPMPTVSWVK-------YIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
LEC G P PT+ W+K A R + I++V D G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 344 KCIGKNSAGTEE-KVITVAVEHRPE 367
KCI +N GT E + V+ +
Sbjct: 186 KCIAQNLVGTRESSYAKLIVQVKAA 210
Score = 102 bits (256), Expect = 2e-25
Identities = 48/199 (24%), Positives = 69/199 (34%), Gaps = 21/199 (10%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE----------QLPPNMIAGETLII 144
P + T+ CK P TI+W KD + + +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCV 204
G + D G Y C +N G +AS+Q+ R+ P G+ A ++C
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI-AVLRDDFRVEP-KDTRVAKGETALLECG 131
Query: 205 LEAGEPSPTQTW------IRPDNDGKFGPDVEVY-QELGVLRFNNIATGDEGKYTCIAEN 257
G P PT W + FG V + G L +N+ DEG Y CIA+N
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 258 SAGKEV-MNAYIHVLTLPA 275
G A + V A
Sbjct: 192 LVGTRESSYAKLIVQVKAA 210
Score = 81.1 bits (200), Expect = 8e-18
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 53/181 (29%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P + P++ + V+ EP TL C+ G+P PT+ W K ++ ++ R + A++
Sbjct: 10 PRIIEHPTD-LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY 387
T+ +E D G+Y C+ KN G
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQ---------------------------------- 94
Query: 388 RPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SIRW 446
AV +AS+ +V + P V G+ A + C P ++ W
Sbjct: 95 -----------AVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 447 Q 447
Sbjct: 144 I 144
Score = 58.3 bits (141), Expect = 6e-10
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 84 LAYLSPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE- 140
+A L + +V P+ +G +EC P T+ W KD ++
Sbjct: 104 IAVLRD---DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160
Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
L+I+ + DEG Y C QN G YA + V + H
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVKAAAHHHH 215
Score = 40.6 bits (95), Expect = 4e-04
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
A ++ + PRI P VK + A + C G +I W
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWF 44
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 113 bits (284), Expect = 3e-27
Identities = 45/349 (12%), Positives = 83/349 (23%), Gaps = 60/349 (17%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIECK---------------SNDPSATIKWSKDNQ 129
+ ++ P VT C S+ + + + +
Sbjct: 211 NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGK 270
Query: 130 EQLPPN---------MIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
+++I G+ K D G Y+C +
Sbjct: 271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE 330
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY-------- 232
+ G + C E + W + + V
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 233 ------------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
+ N + + D G Y C+ + P + +
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG 450
Query: 281 SEYVSVRPGEPLTLEC----EATGRPMPTVSWVKYIAPF--------DRNLERDELTSRA 328
+ V+ GE L + C + + W + + SR
Sbjct: 451 N--VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508
Query: 329 VY-TIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
V T+ V +D G Y C + + E + VAVE R G
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL 557
Score = 104 bits (259), Expect = 5e-24
Identities = 50/374 (13%), Positives = 94/374 (25%), Gaps = 78/374 (20%)
Query: 96 VTPRQQSAPEGSQVTIEC----KSNDPSATIKWSKDNQEQLPPNMIAGE----------- 140
P + ++ EG+ V+I C S + W + +I+ E
Sbjct: 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA 64
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
+ I +++ D G Y C + + ++ + P +
Sbjct: 65 NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRG---LSFDVSLEVSQGPGLLNDTK- 120
Query: 190 SQTFIVGDRADIQCVLEA-GEPSPTQTWIRPDNDGKFGPDVEVYQELG------------ 236
T +G I C + + + D Y
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180
Query: 237 -----VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV--------TITPSEY 283
+ N + D G+Y C A + + NA + VL ++T
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCA 240
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLER-----DELTSRAVYTIASVRES 338
+ C + V R + I +R+
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300
Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVY 398
DAG+Y C + +E A + PR +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV-----------------KG 343
Query: 399 AVGSNASISCSVEP 412
GS+ ++ C
Sbjct: 344 VAGSSVAVLCPYNR 357
Score = 97.0 bits (240), Expect = 1e-21
Identities = 45/339 (13%), Positives = 87/339 (25%), Gaps = 61/339 (17%)
Query: 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE------------ 140
+ + + G VTI C + + K P +I
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Query: 141 -----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA 189
+++IN + +D G Y+C + + + A +QV K E +
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPEPELVYEDLRG 233
Query: 190 SQTF------IVGDRADIQCVLEAGEPSPTQTWIR-----PDNDGKFGPDVEVYQELGVL 238
S TF V + A C ++ + P +G+ + + +
Sbjct: 234 SVTFHCALGPEVANVAKFLCR-QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY---VSVRPGEPLTLE 295
+ D G+Y C A + + + T V G + +
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY---------------------TIAS 334
C + ++ + + S +
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
+ DAG Y C+ V +E P
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN 451
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 106 bits (265), Expect = 1e-26
Identities = 42/198 (21%), Positives = 65/198 (32%), Gaps = 33/198 (16%)
Query: 195 VGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
+ + + W IR + K G E L+ N D+
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDK 71
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTL--------------------PAVTITPSEYVSVRP 288
GKY + + V + V+++
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 289 GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
G+ L L C G P P VSW+K +A D + E A +TI V +D+G+Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 346 IGKNSAGTEEKVITVAVE 363
+ KN G+E TV+V
Sbjct: 192 VVKNKYGSETSDFTVSVF 209
Score = 90.7 bits (225), Expect = 3e-21
Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 29/198 (14%)
Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKADEG 153
QS EG Q+ + WS + + + L IN T D+G
Sbjct: 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKG 72
Query: 154 VYICSIQNAQGNV-----------------FQDYASIQVDKREMPRIRIHPNASQTFIVG 196
Y+ + + + FQ + ++ R+ T G
Sbjct: 73 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132
Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTC 253
++ C + G+P P +W++ + + E G N ++T D GKY
Sbjct: 133 KALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 254 IAENSAGKEVMNAYIHVL 271
+ +N G E + + V
Sbjct: 192 VVKNKYGSETSDFTVSVF 209
Score = 64.5 bits (157), Expect = 4e-12
Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 40/176 (22%)
Query: 284 VSVRPGEPLTLECEA----------TGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
L ++ A V+W I DR ++ +
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDR-VKTGVTGEQIWL 61
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPE 390
I +D G+Y + +K + ++ + E R + + +
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN------ 115
Query: 391 PEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ P T++ G N+ C+ G P + W
Sbjct: 116 --------------------RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151
Score = 56.8 bits (137), Expect = 2e-09
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE-------QLPPNMIAGETLIINGITK 149
P + EG + + C DP + W K+ + L ING++
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVD 176
AD G Y ++N G + + V
Sbjct: 184 ADSGKYGLVVKNKYG---SETSDFTVS 207
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 105 bits (264), Expect = 1e-26
Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDGKFGPDVEVYQELGV----- 237
P G+ A + C P W+ +D + V +
Sbjct: 6 PEQRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64
Query: 238 ---------------------LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
+ N+ D G Y C + + G + VL P+
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124
Query: 277 TITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
T + S G L+CE G W K + V ++ +
Sbjct: 125 TRCFVD-GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAV 362
+G Y C +N G+++ ++ + V
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 99.0 bits (246), Expect = 4e-24
Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 39/214 (18%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-----SNDPSATIKWSKDNQEQLP-------------- 133
+ ++ +G + CK + I+W +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 134 ----------------PNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
++ + + +D G Y C ++ A G +
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPG---VANKKFLLTV 118
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
P + +G+ ++C + G W + + V
Sbjct: 119 LVKPSG-TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV 177
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ N ++ G Y+C +N G + + V+
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 62.8 bits (152), Expect = 2e-11
Identities = 30/224 (13%), Positives = 55/224 (24%), Gaps = 82/224 (36%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPT----VSWVKYIAPFDRN--------------- 318
TP + + GE L C+ T P + W+ +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 319 -----------LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
D + A + +++ SD G Y+C K + G K + V
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV----- 118
Query: 368 YGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPG 427
+ P T V + + G
Sbjct: 119 ------------------------------------------LVKPSGTRCFVDGSEEIG 136
Query: 428 DIANIRCSAI-GATPISIRWQ----PLQGYFPSHVVEYNGELRL 466
+ ++C G+ P+ WQ P + + +
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 103 bits (258), Expect = 6e-26
Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 22/181 (12%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
++ P Q I R + P I + L
Sbjct: 29 FKLGPGEEQVLI--GRMHHDVIFI-EWPFRGFFDIHRSANT------------FFLVVTA 73
Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
+G Y C + + ++ V+ +++ LT+ C P
Sbjct: 74 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTVNAFP 132
Query: 303 MPTVSWVK----YIAPFDRN--LERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
P V W+ AP N + +++ S +V S+ + C+GKN
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Query: 357 V 357
V
Sbjct: 193 V 193
Score = 87.8 bits (217), Expect = 3e-20
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 39/200 (19%)
Query: 102 SAPEGSQVTIECK----SNDPSATIKWSKDNQEQLP-----------------------P 134
+A G +VT+ S P + W K +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
L++ + +G Y+C ++ + V + + + +H F
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEV---TKQEHLSVVKPLTLSVHSE-RSQFP 117
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDN----DGKFGPDVEVYQE--LGVLRFNNIATGDE 248
+ C + P P W+ P+ V ++ L V ++
Sbjct: 118 DFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 249 GKYTCIAENSAGKEVMNAYI 268
TC+ +N E Y+
Sbjct: 177 LPVTCVGKNDKE-EAHGVYV 195
Score = 63.5 bits (154), Expect = 8e-12
Identities = 29/212 (13%), Positives = 52/212 (24%), Gaps = 76/212 (35%)
Query: 284 VSVRPGEPLTLECEA---TGRPMPTVSWVKYIA-------------------PFDRNLER 321
V+ GE +TL + P VSW K PF +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILP 381
+ + + S G Y C K K ++V
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV------------------- 101
Query: 382 DGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATP 441
V+P +++ R + + C+
Sbjct: 102 ----------------------------VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 133
Query: 442 ISIRWQPLQGYFPS-------HVVEYNGELRL 466
++W +G P+ + E +G L +
Sbjct: 134 PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSV 165
Score = 49.6 bits (118), Expect = 4e-07
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAG----------ETLII 144
V + P+ S +T+ C N P ++W + P G +
Sbjct: 109 VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVD 168
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYAS 172
+ K C +N + Y S
Sbjct: 169 LSLPKPWHLPVTCVGKNDKEEAHGVYVS 196
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 102 bits (254), Expect = 3e-25
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 18/200 (9%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE------------ 234
P T VG ++C + IR K D + E
Sbjct: 8 PKEVYTVDVGSSVSLECDFD-RRECTELEGIRASLQ-KVENDTSLQSERATLLEEQLPLG 65
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
+ ++ D G+Y C+ A + Y+ V + + + V + L
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWD--YKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
C+A G P+ VSW P + + R V ++ ++ + + C+ N+ E
Sbjct: 124 TCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE 183
Query: 355 EKVITVAVEHRPEYGPISPR 374
+ R E P PR
Sbjct: 184 LTSAIIDPLSRME--PKVPR 201
Score = 80.1 bits (197), Expect = 1e-17
Identities = 31/209 (14%), Positives = 61/209 (29%), Gaps = 32/209 (15%)
Query: 94 VQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQ--------------LPPNMIA 138
V + GS V++EC ++ + + ++ L +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 139 GE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD 197
G+ I + D G Y C + DY + V K + +RI
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVIC---GAAWDYKYLTV-KVKASYMRIDTR-ILEVPGTG 119
Query: 198 RADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN-----NIATGDEGKYT 252
+ C G P +W P + + + ++
Sbjct: 120 EVQLTCQAR-GYPLAEVSWQNVS-----VPANTSHIRTPEGLYQVTSVLRLKPQPSRNFS 173
Query: 253 CIAENSAGKEVMNAYIHVLTLPAVTITPS 281
C+ N+ KE+ +A I L+ + +
Sbjct: 174 CMFWNAHMKELTSAIIDPLSRMEPKVPRT 202
Score = 62.4 bits (151), Expect = 2e-11
Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN----------LERDELTS- 326
P E +V G ++LEC+ R + ++ N L ++L
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE- 385
+A++ I SV+ D+GQY+C+ A + K +TV V + + +P E
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV----KASYMRIDTRILEVPGTGEV 121
Query: 386 ------YYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQT--VKPGDIANIRCSA 436
P E V + + S L V +KP N C
Sbjct: 122 QLTCQARGYPLAE----VSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 101 bits (252), Expect = 3e-25
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 37/187 (19%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPD--------------NDGKFGPDVEVYQEL----- 235
GD ++ C + S W + K + + L
Sbjct: 9 KGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
L N+ D Y C E+ EV + + G+ LTL
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTH--------LLQGQSLTLT 118
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
E+ P+V P +N++ + +++ + D+G + C + E
Sbjct: 119 LESPPGSSPSVQCRS---PRGKNIQGGK-----TLSVSQLELQDSGTWTCTVLQNQKKVE 170
Query: 356 KVITVAV 362
I + V
Sbjct: 171 FKIDIVV 177
Score = 98.1 bits (244), Expect = 4e-24
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 45/199 (22%)
Query: 103 APEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI-----------------------A 138
+G V + C S S W NQ ++ N
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDR 198
LII + D YIC +++ + V ++ + N+ + G
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEV------------QLLVFGLTANSDTHLLQGQS 114
Query: 199 ADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
+ SP+ P + Q L + + D G +TC +
Sbjct: 115 LTLTLESP-PGSSPSVQCRSPRG--------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 165
Query: 259 AGKEVMNAYIHVLTLPAVT 277
K I VL +
Sbjct: 166 QKKVEFKIDIVVLAFQKAS 184
Score = 60.4 bits (146), Expect = 6e-11
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 82 ICLAYLSPQANEVQV----TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNM 136
IC + ++ V +G +T+ +S S +++ + +
Sbjct: 84 ICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG- 142
Query: 137 IAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+TL ++ + D G + C++ Q V I +
Sbjct: 143 ---KTLSVSQLELQDSGTWTCTVLQNQKKV---EFKIDI 175
Score = 56.9 bits (137), Expect = 9e-10
Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 52/175 (29%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVK-----------------YIAPFDRNLERDEL 324
+ V + G+ + L C A+ + W DR R L
Sbjct: 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62
Query: 325 TSRAVYT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD 382
+ + I +++ D+ Y C ++ E + ++ +L
Sbjct: 63 WDQGNFPLIIKNLKIEDSDTYICEVEDQKE----------EVQLLVFGLTANSDTHLLQ- 111
Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT-LRPVRQTVKPGDIANIR 433
G + +++ P + P + ++ G ++
Sbjct: 112 ------------------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVS 148
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 101 bits (253), Expect = 4e-25
Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 23/212 (10%)
Query: 179 EMPRIRIHPNASQTFIV----GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE--VY 232
P I + + I C + + + +F PD +
Sbjct: 3 RSPFIASVSDQHGVVYITENKNKTVVIPC--LGSISNLNVSLCARYPEKRFVPDGNRISW 60
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL---TLPAVTITPSEYVSVRPG 289
+ G C A+ + YI V+ + V ++PS + + G
Sbjct: 61 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120
Query: 290 EPLTLECEATGRPMPTV--SWVKYIAPFDRNLERDELTSR----------AVYTIASVRE 337
E L L C A + +W + + + TI V
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
SD G Y C + T++ V V P G
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG 212
Score = 96.4 bits (239), Expect = 4e-23
Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 102 SAPEGSQVTIECKSNDPSATIKW-SKDNQEQLPPNMIA-----GETLIINGITKADEGVY 155
+ + V I C + + + ++ +++ P+ + I + G+
Sbjct: 20 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79
Query: 156 ICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAG-EPSPTQ 214
C + + + V + + + P+ VG++ + C
Sbjct: 80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 215 TWIRPDNDGKFGPDV----------EVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVM 264
W P + + V E+ + L L + + D+G YTC A + +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 265 NAYIHVLTLP 274
+ ++ V P
Sbjct: 200 STFVRVHEDP 209
Score = 55.6 bits (133), Expect = 4e-09
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 273 LPAVTITPSE-YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT--SRAV 329
+ +V+ Y++ + + + C + VS + + ++ S+
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKG 65
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
+TI S S AG C K + + + ++ + V + P I
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI---------- 115
Query: 390 EPEEGEYVYAVGSNASISCSVE 411
+VG ++C+
Sbjct: 116 -------ELSVGEKLVLNCTAR 130
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 100 bits (249), Expect = 7e-25
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 20/184 (10%)
Query: 101 QSAPEGSQVTIECKSND---PSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
GS++ + C ND +W K L + + G+ + G Y C
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVV-LKEDALPGQKTEFKVDSDDQWGEYSC 66
Query: 158 SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
+ + PR++ + S+ G+ A + C E+ P W
Sbjct: 67 VFLPEPM------GTANIQLHGPPRVKAVKS-SEHINEGETAMLVCKSESVPPVTDWAWY 119
Query: 218 RPDNDGKFGPD--------VEVYQELGVLRFNNI-ATGDEGKYTCIAENSAGKEVMNAYI 268
+ + V Q L N+ D G+Y C +S G + +
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Query: 269 HVLT 272
V +
Sbjct: 180 RVRS 183
Score = 93.9 bits (233), Expect = 1e-22
Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 20/179 (11%)
Query: 195 VGDRADIQCVLEAG-EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
+G + + C L W++ G + + F + G+Y+C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLK---GGVVLKEDAL--PGQKTEFKVDSDDQWGEYSC 66
Query: 254 IAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP-MPTVSWVKYI 312
+ A I + P V S + GE L C++ P + +W K
Sbjct: 67 VFLPEPM---GTANIQLHGPPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKIT 122
Query: 313 APFDRNLE-----RDELTSRAVYT---IASV-RESDAGQYKCIGKNSAGTEEKVITVAV 362
D+ L R ++S + I ++ E+D GQY+C G +S G+++ +IT+ V
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 58.1 bits (140), Expect = 3e-10
Identities = 15/164 (9%), Positives = 32/164 (19%), Gaps = 58/164 (35%)
Query: 286 VRPGEPLTLECEATGRPMPTVS--WVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
G + L C W+K + +++ + G+Y
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLK-----GGVVLKEDALPGQKTEFKVDSDDQWGEY 64
Query: 344 KCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSN 403
C+ + +
Sbjct: 65 SCVFLPEPMGT---ANIQLH---------------------------------------- 81
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
PPR+ + + G+ A + C + W
Sbjct: 82 -------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
Score = 47.7 bits (113), Expect = 1e-06
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKS--NDPSATIKWSKDNQEQLPPNMIAGE---------- 140
V+ + EG + CKS P W K + M E
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144
Query: 141 --TLIINGIT-KADEGVYICSIQNAQGNVFQDYASIQVD 176
L I + +AD G Y C+ +++G D A I +
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKG---SDQAIITLR 180
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 95.0 bits (236), Expect = 4e-23
Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 21/188 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P++ ++P G+ + C + W +G + L
Sbjct: 5 PKVSLNPP-WNRIFKGENVTLTCNGNNFFEVSSTKWFH---NGSLSE-----ETNSSLNI 55
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEA-T 299
N D G+Y C + E Y+ V + + +E V G+PL L C
Sbjct: 56 VNAKFEDSGEYKCQHQQVNESE--PVYLEVFSDWLLLQASAEVV--MEGQPLFLRCHGWR 111
Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
+ V + K +I + D+G Y C GK E + +
Sbjct: 112 NWDVYKVIYYK------DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165
Query: 359 TVAVEHRP 366
+ V P
Sbjct: 166 NITVIKAP 173
Score = 90.0 bits (223), Expect = 3e-21
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 20/184 (10%)
Query: 94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
V + P +G VT+ C + ++ KW + N +L I D
Sbjct: 7 VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----SSLNIVNAKFED 62
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y C Q + + ++ + ++ + G ++C
Sbjct: 63 SGEYKCQHQQVNES-----EPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDV 115
Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMN-AYIHV 270
+ + DG+ ++ + E + N D G Y C + I V
Sbjct: 116 YKVIYYK---DGEA---LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Query: 271 LTLP 274
+ P
Sbjct: 170 IKAP 173
Score = 66.8 bits (163), Expect = 3e-13
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGETL 142
YL ++ + + + EG + + C N + + KD + +
Sbjct: 79 VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--ENHNI 136
Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
I T D G Y C+ + Q + + +I V + PR +
Sbjct: 137 SITNATVEDSGTYYCTGKVWQLDYESEPLNITV--IKAPREK 176
Score = 31.8 bits (72), Expect = 0.23
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 413 PRITLRPVRQTVKPGDIANIRCSAIG-ATPISIRW 446
P+++L P + G+ + C+ S +W
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKW 39
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 92.3 bits (229), Expect = 8e-22
Identities = 25/198 (12%), Positives = 50/198 (25%), Gaps = 26/198 (13%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQELGVLRFNNI 243
+ + + E + + I K D + + +
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG--IIEMFMEKL 68
Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS-----------------V 286
DEG YT ++ + + V
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 128
Query: 287 RPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
+ L+C+ T + W K + + D I + DAG Y+
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 188
Query: 346 IGKNSAGTEEKVITVAVE 363
I K+ G ++ + + E
Sbjct: 189 ILKDDRGKDKSRLKLVDE 206
Score = 81.1 bits (200), Expect = 7e-18
Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 24/198 (12%)
Query: 97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMI--------AGETLIING 146
+ E QV + +A + + + +E + +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67
Query: 147 ITKADEGVYICSIQNAQG----------NVFQDYASIQVDKREMPRIRIHP----NASQT 192
+ DEG Y +Q+ + +VF+ +R+ + P S
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127
Query: 193 FIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYT 252
++C + + W + + + + + L + D G Y
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYE 187
Query: 253 CIAENSAGKEVMNAYIHV 270
I ++ GK+ +
Sbjct: 188 VILKDDRGKDKSRLKLVD 205
Score = 61.9 bits (150), Expect = 3e-11
Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 47/175 (26%)
Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVK----------YIAPFDRNLERDELTSRAVYTI 332
V + + +A V+++ Y DRN E+ +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF------M 65
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
+++ D G Y ++ T + + + + L E+ R E
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK------------LQKEAEFQRQEWI 113
Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRW 446
+ P + V ++C I W
Sbjct: 114 RK----------------QGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVW 151
Score = 57.3 bits (138), Expect = 1e-09
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 96 VTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE----TLIINGITK 149
V V ++CK + I W KD +E + TL+I +K
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
D G+Y +++ +G +D + +++
Sbjct: 181 KDAGIYEVILKDDRG---KDKSRLKL 203
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 93.4 bits (231), Expect = 1e-21
Identities = 43/249 (17%), Positives = 71/249 (28%), Gaps = 58/249 (23%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLE--AGEPSPTQTWIRPDNDGKFGPDVEVYQEL-- 235
+P + + VG+ + CV++ + W+ + V Y
Sbjct: 5 LPGLTVSS-PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 236 --------------------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G L ++ DEG YTC VM + + LP
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP- 122
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK---------YIAPFDRNLERDE 323
+ VR G+ + C V+W+ + +D N+ +
Sbjct: 123 ---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 324 LTSRAVY-----------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
S + + +V+ESD G Y C K I + V
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Query: 367 EYGPISPRP 375
ISP P
Sbjct: 240 FQRTISPTP 248
Score = 84.9 bits (209), Expect = 9e-19
Identities = 37/254 (14%), Positives = 68/254 (26%), Gaps = 66/254 (25%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMIAGE--- 140
S + V+ Q G V + C + W + +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 141 -----------------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
+L++ + KADEG+Y C I+ ++ V+
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM---VMKKPVEL 118
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ--TWIRPDNDGKFGPDVEVYQEL 235
+P VGD ++C +++ E W+ V Y
Sbjct: 119 WVLP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSN 174
Query: 236 --------------------------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIH 269
G ++ + D+G YTC + +H
Sbjct: 175 MRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234
Query: 270 VLTL-PAVTITPSE 282
V+ TI+P+
Sbjct: 235 VVQDEFQRTISPTP 248
Score = 58.7 bits (141), Expect = 8e-10
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 26/124 (20%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLEC---EATGRPMPTVSWVK---------------- 310
LP +T++ + + V GE + + C + + V W+
Sbjct: 2 SQGLPGLTVSSPQ-LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 311 ----YIAPFD--RNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
F +L D + + V+++D G Y C + + V +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 365 RPEY 368
PE
Sbjct: 121 LPEE 124
Score = 30.2 bits (67), Expect = 1.4
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRC---SAIGATPISIRWQ 447
S P +T+ + V G+ + C + W
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWL 43
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 91.0 bits (225), Expect = 2e-21
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 19/202 (9%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
+I P + +GD + C G SP +W R D V L N
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTT-GCESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG- 300
++ G+E Y C A + K + + + P + G+P+T++C
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADV 118
Query: 301 --RPMPTVSWVKYIAPFDRNLERDELTSRAV------YTIASVRESDAGQYKCIGKNSAG 352
+ +K ++ +++ T V E C K
Sbjct: 119 YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178
Query: 353 -------TEEKVITVAVEHRPE 367
+ V + V P+
Sbjct: 179 EMDSVPTVRQAVKELQVYISPK 200
Score = 77.5 bits (190), Expect = 1e-16
Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 24/205 (11%)
Query: 93 EVQVTPRQQ-SAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---TLIINGI 147
+++ TP + A G V++ C + S W L + TL +N +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
+ +E Y+C+ + + +++ + S G ++C +
Sbjct: 62 SFGNEHSYLCTATCESRKL-EKGIQVEIYS---FPKDPEIHLSGPLEAGKPITVKCSVAD 117
Query: 208 GEPSPTQTW--------IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSA 259
P ++ + + + + F + C A+
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177
Query: 260 GKE-------VMNAYIHVLTLPAVT 277
+ + V P T
Sbjct: 178 DEMDSVPTVRQAVKELQVYISPKNT 202
Score = 75.2 bits (184), Expect = 7e-16
Identities = 27/176 (15%), Positives = 44/176 (25%), Gaps = 55/176 (31%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELT--SRAVYTIA 333
+ TP + G+ ++L C TG P SW I D L + + T+
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI---DSPLNGKVTNEGTTSTLTMN 59
Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEE 393
V + Y C + EK I V +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIY------------------------------ 89
Query: 394 GEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI---SIRW 446
P+ + ++ G ++CS P I
Sbjct: 90 -----------------SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Score = 34.0 bits (77), Expect = 0.057
Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 20/111 (18%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQEQLPPNMIAGE------- 140
+ G +T++C D I K + + +
Sbjct: 92 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL-MKSQEFLEDADRKSLE 150
Query: 141 ----TLIINGITKADEGVYIC----SIQNAQGNVFQDYASIQVDKREMPRI 183
+ + + V +C I A ++ P+
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201
Score = 29.0 bits (64), Expect = 2.7
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 414 RITLRPV-RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNG 462
+I P R + GD ++ CS G W+ + V G
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEG 51
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 89.1 bits (221), Expect = 4e-21
Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 21/184 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+++ P + D + C S + W +G +
Sbjct: 5 AVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFH---NGN-----LIPTHTQPSYR 55
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
D G+YTC ++ + ++ VL V TP GE + L C +
Sbjct: 56 FKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQE--GETIMLRCHSWK 111
Query: 301 RPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE-KVI 358
V++ + + ++I S +G Y C G K +
Sbjct: 112 DKPLVKVTFFQ------NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPV 165
Query: 359 TVAV 362
T+ V
Sbjct: 166 TITV 169
Score = 86.8 bits (215), Expect = 3e-20
Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 19/177 (10%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIIN 145
+P +++ P + + VT+ C+ + S +I+W + +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----QPSYRF 56
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVL 205
D G Y C D + V + P F G+ ++C
Sbjct: 57 KANNNDSGEYTCQTGQTS---LSDPVHLTV--LFEWLVLQTP--HLEFQEGETIMLRCHS 109
Query: 206 EAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
+P T+ + +GK + G Y C
Sbjct: 110 WKDKPLVKVTFFQ---NGKS---QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLF 160
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/165 (13%), Positives = 43/165 (26%), Gaps = 31/165 (18%)
Query: 40 VSAENHEVTVYEGGDAELKCNTYYAPGRW--MWLNFYSFL-----SLIII---------- 82
+ E + V + L C +P W + + +
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEY 66
Query: 83 -CLA---YLSPQAN-EVQVTPRQQSAP-----EGSQVTIEC--KSNDPSATIKWSKDNQE 130
C LS + V P EG + + C + P + + ++ +
Sbjct: 67 TCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKS 126
Query: 131 QLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
Q + T I + G Y C+ +I V
Sbjct: 127 QKFSH--LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 30.6 bits (69), Expect = 0.58
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 412 PPR--ITLRPVRQTVKPGDIANIRCSAIGAT-PISIRW 446
PP+ + L P V D + C + SI+W
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQW 39
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 87.7 bits (216), Expect = 1e-19
Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 64/240 (26%)
Query: 187 PNASQTFIVGDRADIQC--VLEAGEPSPTQTWIR-------------------------- 218
+ G ++ C L P +W++
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 219 ----PDNDGKFGPDVEVYQELGV-LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
++ G F V LR ++ D G+Y C + + + L
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 274 --------PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE----- 320
V ++ +E V V G +T+ C T V+W F+
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQP 187
Query: 321 ------------------RDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
R + I + + +DAG+ C G + + +
Sbjct: 188 LANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 83.0 bits (204), Expect = 4e-18
Identities = 28/245 (11%), Positives = 52/245 (21%), Gaps = 68/245 (27%)
Query: 94 VQVTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMI------------ 137
V+ T + G V + C ++ I W K +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 138 -----------------------AGETLIINGITKADEGVYICSIQN--AQGNVFQDYAS 172
A TL + + D G Y C + + D S
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 173 IQVDKREM---PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN---DGKFG 226
+ + + + G+ + C + TW + + G
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETG 183
Query: 227 PDVEVYQ--------------------ELGVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
+ L D G+ C G+ +
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Query: 267 YIHVL 271
+L
Sbjct: 244 SSTIL 248
Score = 58.8 bits (141), Expect = 6e-10
Identities = 25/216 (11%), Positives = 44/216 (20%), Gaps = 73/216 (33%)
Query: 276 VTIT-PSEYVSVRPGEPLTLECE---ATGRPMPTVSWVK--------------------- 310
+T+ V V G + L C A P +SW+K
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 311 --YIAPFDRNLERDELTSRAVY--------TIASVRESDAGQYKCIGKNSAGTEEKVITV 360
++ + RA + V D G+Y C + E +
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 361 AVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPV 420
G
Sbjct: 123 KSVVLKVTGHTPS--------------------------------------NNVHVSTAE 144
Query: 421 RQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSH 456
V G+ + C ++ W +F ++
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180
Score = 42.2 bits (98), Expect = 2e-04
Identities = 25/132 (18%), Positives = 35/132 (26%), Gaps = 28/132 (21%)
Query: 39 FVSAENHEVTVYEGGDAELKCNTY-YAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVT 97
+ V V EG D + C A W Y P E T
Sbjct: 138 VHVSTAEVVQVDEGNDITMTCPCTDCANANVTW---------------YTGPTFFENYET 182
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYIC 157
Q +Q I S++ + +S L+I D G C
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGAR------------NLVIRAAKITDAGRVWC 230
Query: 158 SIQNAQGNVFQD 169
+ QG + D
Sbjct: 231 ELATGQGELDAD 242
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 85.3 bits (211), Expect = 3e-19
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
Y + + + A + V G + + CE P T+SW
Sbjct: 1 ATYAAASSALVPRGSH--------MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 309 VKY---IAPFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEH 364
+ + + N++ S + + E+D G Y C N G E +
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 365 RPE 367
P
Sbjct: 113 TPS 115
Score = 61.0 bits (148), Expect = 6e-11
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 177 KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVE 230
M ++ + G++ +I C + PS T +W + N +
Sbjct: 14 GSHMYAPKLQGPVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNI--KIY 70
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
L + D G Y C A N G+E + + P+
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 59.5 bits (144), Expect = 2e-10
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 30/136 (22%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPP---------NMIAGETLIINGI 147
P EG+QV I C+ PSATI W +D Q LP N + L +
Sbjct: 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQL-LPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
++ D G Y C+ N G Q+ + P++ V +
Sbjct: 84 SENDFGNYNCTAVNRIG---QESLEFIL------VQADTPSSPSIDQVEPYSS------- 127
Query: 208 GEPSPTQTWIRPDNDG 223
+ + P+ G
Sbjct: 128 ---TAQVQFDEPEATG 140
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 394 GEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPL 449
Y A + + P++ PV G+ NI C +I W Q L
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 450 QGYFPSHVVEYNGE 463
S++ YN
Sbjct: 60 PSSNYSNIKIYNTP 73
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 86.5 bits (213), Expect = 5e-19
Identities = 44/292 (15%), Positives = 91/292 (31%), Gaps = 26/292 (8%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQEQLPPNMIAGETLIINGITKA 150
+ V+P + P G V + C ++ P + +++L + ++ +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEP 210
++ +C G Q A + P VG ++C +E G P
Sbjct: 59 EDSQPMCYSNCPDG---QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 211 SP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY- 267
T +R + + K P V E ++C E + + +
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Query: 268 -------IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLE 320
+ LPA + T+ C G P ++A D+ L
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLF-PVSEAQVHLALGDQRLN 233
Query: 321 R------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
D +++A ++ + + + C ++E + TV + P
Sbjct: 234 PTVTYGNDSFSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284
Score = 64.9 bits (157), Expect = 8e-12
Identities = 32/241 (13%), Positives = 61/241 (25%), Gaps = 41/241 (17%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
+ P+ G + C +P P + +
Sbjct: 2 TSVSPS-KVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPG-----NNRKVYEL 54
Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA-VTITPSEYVSVRPGEPLTLECEATG- 300
++ + C + G+ ++ V P V + P G+ LTL C+ G
Sbjct: 55 SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEGG 113
Query: 301 --RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTE---- 354
R TV ++ R E T+ R+ + C + +
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAE-VTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Query: 355 ----EKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSV 410
+ P P P V V + ++ CS+
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSP--------------------RVLEVDTQGTVVCSL 212
Query: 411 E 411
+
Sbjct: 213 D 213
Score = 57.6 bits (138), Expect = 2e-09
Identities = 27/203 (13%), Positives = 64/203 (31%), Gaps = 15/203 (7%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSND----PSATIKWSKDNQE---QLPPNMIAGETLIING 146
V++ P P G +T+ C+ + T+ + +E + A T +
Sbjct: 89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV 148
Query: 147 ITKADEGVYIC----SIQNAQGNVFQD-YASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
+ C ++ +F++ A Q+ +P + + V + +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE---GKYTCIAENS 258
C L+ P D + P V + + + T ++ + TC
Sbjct: 209 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Query: 259 AGKEVMNAYIHVLTLPAVTITPS 281
+ + + + PA + +
Sbjct: 269 NQSQETLQTVTIYSFPAPNVILT 291
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 82.2 bits (203), Expect = 1e-18
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 23/184 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+ + P + + D ++C + W + +
Sbjct: 8 AVVFLEPQ-WYSVLEKDSVTLKCQGAYSPEDNSTQWFH---NESLIS-----SQASSYFI 58
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT- 299
+ D G+Y C S + + V + P + +P+ L C +
Sbjct: 59 DAATVNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWK 114
Query: 300 GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--- 356
+ V++++ +R + + I D+G Y C G +
Sbjct: 115 NTALHKVTYLQ------NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 357 VITV 360
IT+
Sbjct: 169 NITI 172
Score = 81.8 bits (202), Expect = 2e-18
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 19/171 (11%)
Query: 94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
V + P+ S E VT++C+ + + +W + + + I+ T D
Sbjct: 10 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL-ISSQ---ASSYFIDAATVND 65
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y C + D ++V + P F D ++C
Sbjct: 66 SGEYRC---QTNLSTLSDPVQLEV--HIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTAL 118
Query: 212 PTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
T+++ +GK D + + D G Y C +
Sbjct: 119 HKVTYLQ---NGK---DRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNV 163
Score = 55.3 bits (133), Expect = 3e-09
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
V + P SV + +TL+C+ P + W + +L + + Y I
Sbjct: 8 AVVFLEPQW-YSVLEKDSVTLKCQGAYSPEDNSTQWFH-----NESLIS---SQASSYFI 58
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGD 384
+ +D+G+Y+C S ++ + V G + + + + D
Sbjct: 59 DAATVNDSGEYRCQTNLSTLSDPVQLEV------HIGWLLLQAPRWVFKEED 104
Score = 29.5 bits (66), Expect = 1.8
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIG-ATPISIRW 446
+ L P +V D ++C S +W
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQW 42
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 82.8 bits (204), Expect = 2e-18
Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 29/192 (15%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----------- 140
EV + E + V + + W K N IA
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGN-TTAIDKEIARFVPNSNMNFTGQ 59
Query: 141 ------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
+L+ IT D GVY + + Q V + + + +
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVH-QPVTQPFLQVT 118
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
+ T D + C + + W+ + + + Q +LR + I D
Sbjct: 119 -NTTVKELDSVTLTC--LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDA 175
Query: 249 GKYTCIAENSAG 260
G+Y C N
Sbjct: 176 GEYQCEISNPVS 187
Score = 77.0 bits (189), Expect = 2e-16
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 5/136 (3%)
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGK-EVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
G L F I D G YT + + HV +V+ + +TL
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 295 ECEATGRPMPTVSWVKYIAPFDRNLERDELTSR-AVYTIASVRESDAGQYKCIGKNSAGT 353
C + + W+ ER L+ ++ I ++ DAG+Y+C N
Sbjct: 131 TCLSND-IGANIQWLFNSQSLQLT-ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188
Query: 354 EE-KVITVAVEHRPEY 368
I + + P +
Sbjct: 189 RRSNSIKLDIIFDPHH 204
Score = 60.8 bits (147), Expect = 7e-11
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGIT 148
+ + E VT+ C SND A I+W ++Q L L I+ I
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQS-LQLTERMTLSQNNSILRIDPIK 171
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQV 175
+ D G Y C I N + + +
Sbjct: 172 REDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 47.4 bits (112), Expect = 2e-06
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK------------YIAPFDRNLERDE 323
VTI V + L + +W K ++ + N
Sbjct: 2 VTIEA-VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 324 LTSRAVY------TIASVRESDAGQYKCIGKNSAG-TEEKVITVAVEHRPEYGPISPRP 375
+ R + + D G Y + + + V +
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 81.5 bits (201), Expect = 3e-18
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 25/181 (13%)
Query: 194 IVGDRADIQC-VLEAGEPSPTQTWIRPDND---GKFGPDVEVYQEL--------GVLRFN 241
+G ++ + + W + + +F + E ++E G L+
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGR 301
++ T D+ Y ++ GK V+ + V+ P + TL CE
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS-KPKISWT---CINTTLTCEVMNG 127
Query: 302 PMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVA 361
P ++ + + L S + ++KC N E V V+
Sbjct: 128 TDPELNLYQ---------DGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Query: 362 V 362
Sbjct: 179 C 179
Score = 62.2 bits (151), Expect = 1e-11
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 35/183 (19%)
Query: 106 GSQVTIECKS---NDPSATIKWSKDNQEQLPPNMIAGE---------------TLIINGI 147
G + ++ S +D IKW K + ++ + TL I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
D+ +Y SI + +G + + +I+ + + + C +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLE-KIFDL------KIQERVSKPKISWTCINTTLTCEVMN 126
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
G P + DGK + + + T K+ C A N KE
Sbjct: 127 G-TDPELNLYQ---DGK------HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEP 176
Query: 268 IHV 270
+
Sbjct: 177 VSC 179
Score = 50.3 bits (120), Expect = 2e-07
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 44/157 (28%)
Query: 278 ITPSEYVSVRPGEPLTLECE--ATGRPMPTVSWVKY-----IAPFDRNL------ERDEL 324
IT + G+ + L+ + + W K IA F + + +L
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 325 TSRAVYTIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHRPEYGPISPRPGADILPD 382
I ++ D YK ++ G EK+ + ++ R
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV---------------- 106
Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE---PPRIT 416
+P+ + N +++C V P +
Sbjct: 107 ------SKPK----ISWTCINTTLTCEVMNGTDPELN 133
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 78.7 bits (194), Expect = 3e-18
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
+ + + SQ+ G C ++ P+ T W R N GK + G+
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN-GKLPSRAMDFN--GI 63
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L N+ D G Y C N + A +HV
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 76.4 bits (188), Expect = 2e-17
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
VT+ SVRPG +T C A + P T+ W + + L + + TI
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR---LHNGKLPSRAMDFNGILTI 66
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+V+ SDAG Y C G N ++ T+ V+
Sbjct: 67 RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 67.9 bits (166), Expect = 2e-14
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 85 AYLSPQANEVQVT---PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN-MIA 138
A L+ + + VT R QS G+ VT C S P+ T+ W++ + +LP M
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60
Query: 139 GETLIINGITKADEGVYICSIQNAQGNV 166
L I + +D G Y+C+ N
Sbjct: 61 NGILTIRNVQPSDAGTYVCTGSNMFAMD 88
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 404 ASISCSVEPPRITLR-PVRQTVKPGDIANIRCSAIGATPI-SIRWQ-PLQGYFPSHVVEY 460
A ++ +P +T+ Q+V+PG C+A +P ++ W G PS +++
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60
Query: 461 NGELRL 466
NG L +
Sbjct: 61 NGILTI 66
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 81.9 bits (202), Expect = 4e-18
Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 23/201 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+ + P + D ++C G SP + ++ +
Sbjct: 8 AVVFLEPQWYRVL-EKDSVTLKCQ---GAYSPEDQSTQWFHNESLIS-----SQASSYFI 58
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG 300
+ D G+Y C + S + + V + P + +P+ L C +
Sbjct: 59 DAATVDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHSWK 114
Query: 301 RPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT---EEK 356
V++++ R + + I D+G Y C G + E
Sbjct: 115 NTALHKVTYLQ------NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETV 168
Query: 357 VITVAVEHRPEYGPISPRPGA 377
IT+ PG
Sbjct: 169 QITITQGLAVSTISSFFPPGY 189
Score = 57.6 bits (139), Expect = 7e-10
Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 31/166 (18%)
Query: 39 FVSAENHEVTVYEGGDAELKCNTY--YAPGRWMWLNFYSFL-----SLII---------- 81
V E V E LKC W + S + S I
Sbjct: 9 VVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGE 68
Query: 82 -ICLAYLSPQANEVQVT----PRQQSAP-----EGSQVTIEC--KSNDPSATIKWSKDNQ 129
C LS ++ VQ+ AP E + + C N + + ++ +
Sbjct: 69 YRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 130 EQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+ + I T D G Y C NV + I +
Sbjct: 129 GRKYFH--HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 46.4 bits (110), Expect = 4e-06
Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 61/175 (34%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVKYIAPFDRNLERDELTSRAVYTI 332
V + P V + +TL+C+ P + W + +L + + Y I
Sbjct: 8 AVVFLEPQW-YRVLEKDSVTLKCQGAYSPEDQSTQWFH-----NESLIS---SQASSYFI 58
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
+ D+G+Y+C + S ++
Sbjct: 59 DAATVDDSGEYRCQTQLSTLSD-------------------------------------- 80
Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSA-IGATPISIRW 446
+ V + L+ R K D ++RC + + +
Sbjct: 81 ------------PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY 123
Score = 29.5 bits (66), Expect = 2.1
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 409 SVEPPR--ITLRPVRQTVKPGDIANIRCSAIGAT-PISIRW 446
+ + P+ + L P V D ++C + S +W
Sbjct: 2 TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQW 42
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 78.2 bits (193), Expect = 6e-18
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSR 327
+ + + E V PG+ L L C +++W++ +A +R + +E+
Sbjct: 2 SSGSSGVEV-ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVE-- 57
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
+ +D+G Y C+ + +G++ +V V GP S
Sbjct: 58 ----VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
Score = 69.7 bits (171), Expect = 5e-15
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITK 149
V G + + C+ D +I W +D QL + I GE + +
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGV-QLAESNRTRITGEEVEVQDSVP 63
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
AD G+Y C + G+ Y S+ V
Sbjct: 64 ADSGLYACVTSSPSGSD-TTYFSVNV 88
Score = 57.4 bits (139), Expect = 1e-10
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLR 239
+ S GD ++C + + W+R + + +
Sbjct: 3 SGSSGVEVE-SFLVHPGDLLQLRC--RLRDDVQSINWLR--DGVQLAESNRTRITGEEVE 57
Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
+ D G Y C+ + +G + ++V
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 32.7 bits (75), Expect = 0.052
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ V PGD+ +RC SI W
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINW 36
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 75.4 bits (186), Expect = 3e-17
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSRAVY 330
L +T S + ++ G LE + G P PT +W A L D +S
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
S + +D+G YK KN G +E + V V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 58.9 bits (143), Expect = 3e-11
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG--VL 238
P+I G +++ G P PT TW D+ P++ V + +
Sbjct: 3 PKILTASR-KIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
F + D G Y +N G++ + V
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 51.2 bits (123), Expect = 1e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGE---TLIIN 145
+ R+ G +E P T W+ + + A ++
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG-AALAPELLVDAKSSTTSIFFP 63
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV 175
+AD G Y ++N G +D A +V
Sbjct: 64 SAKRADSGNYKLKVKNELG---EDEAIFEV 90
Score = 33.8 bits (78), Expect = 0.015
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P+I + +K G N+ IGA + W
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATW 36
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 75.5 bits (186), Expect = 4e-17
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
+ + P+ + PG L L+C A G P+P W K + L + ++ +Y +
Sbjct: 4 LQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFKN----ELPLTHE---TKKLYMVP 55
Query: 334 SVRESDAGQYKCIGKNSAGTEE-KVITVAVE 363
V G Y C N +++ K + + ++
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 61.6 bits (150), Expect = 3e-12
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
++ V P Q GS + ++C P +W K+ L + ++ +
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-LTHE--TKKLYMVPYVDLEH 61
Query: 152 EGVYICSIQNAQGNVFQDYASIQVD 176
+G Y C + N + + I +D
Sbjct: 62 QGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 57.0 bits (138), Expect = 1e-10
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+I + P SQ + G +QCV G P P W + N+ + + +
Sbjct: 4 LQICVEP-TSQKLMPGSTLVLQCVAV-GSPIPHYQWFK--NELPLTHETK-----KLYMV 54
Query: 241 NNIATGDEGKYTCIAENSAG 260
+ +G Y C N
Sbjct: 55 PYVDLEHQGTYWCHVYNDRD 74
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQG 451
+I + P Q + PG ++C A+G+ +W PL
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH 46
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.5 bits (186), Expect = 7e-17
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 255 AENSAGKEVMNAYIHVLTLPAVTITPSEY---VSVRPGEPLTLECEATGRPMPTVSWVKY 311
+ S+G I + P P + GE L L G+P P V W K
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK- 60
Query: 312 IAPFDRNLERDELTSR-----AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
L+ + R V+ + SD+G+Y+ + + I + V +
Sbjct: 61 ---GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 60.1 bits (146), Expect = 2e-11
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 176 DKREMPRIRIHPNASQTFIV--GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VE 230
+ E P+IR+ + QT+I G++ ++ + G+P P W + V
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTK--GGAPLDTSRVHVR 73
Query: 231 VYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
V A D G+Y + K+ I V+
Sbjct: 74 TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 49.3 bits (118), Expect = 1e-07
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 20/103 (19%)
Query: 90 QANEVQVTPR---------QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAG 139
E+ P+ G Q+ + P + W+K L + +
Sbjct: 14 TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP-LDTSRVHV 72
Query: 140 ET------LIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
T + ++D G Y S+Q +D A+I++
Sbjct: 73 RTSDFDTVFFVRQAARSDSGEYELSVQIENM---KDTATIRIR 112
Score = 32.7 bits (75), Expect = 0.069
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 399 AVGSNASISCSV------EPPRITL-RPVRQT--VKPGDIANIRCSAIGATPISIRWQ 447
+ GS+ +++ V EPP+I L R +RQT K G+ N+ G + W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWT 59
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 75.5 bits (185), Expect = 8e-17
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 272 TLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIA------------PFDRNL 319
+ V ++PS + + GE L L C A + +
Sbjct: 6 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65
Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ + TI V SD G Y C + T++ V V +P
Sbjct: 66 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 62.8 bits (152), Expect = 2e-12
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 13/115 (11%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFG------------ 226
+ + + P+ VG++ + C E + + K
Sbjct: 6 RIYDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 64
Query: 227 PDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
E+ + L L + + D+G YTC A + + + ++ V P V
Sbjct: 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG 119
Score = 51.7 bits (123), Expect = 2e-08
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 21/113 (18%)
Query: 93 EVQVTP-RQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMI----------- 137
+V ++P G ++ + C + W + + ++
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 138 ---AGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
TL I+G+T++D+G+Y C+ + S V E P +
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMT---KKNSTFVRVHEKPFVAFGS 118
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 75.1 bits (185), Expect = 1e-16
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
P + P + VR GE + L + TG T +W+K I + +E E S+
Sbjct: 8 PQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK-- 64
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
TI + R+ G Y + +N G+ + + + V +P+
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102
Score = 58.1 bits (141), Expect = 8e-11
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 177 KREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD----VEVY 232
P+I P Q G+ ++ + G T TW++ + VE
Sbjct: 4 GSSGPQIIQFPE-DQKVRAGESVELFGKVT-GTQPITCTWMK--FRKQIQESEHMKVENS 59
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
+ L G YT + EN G + V+ P
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 51.6 bits (124), Expect = 1e-08
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE---TLIINGITK 149
P Q G V + K + T W K ++ + + + E L I +
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQ 72
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQV 175
G Y ++N G A + +
Sbjct: 73 EHCGCYTLLVENKLG---SRQAQVNL 95
Score = 36.2 bits (84), Expect = 0.004
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S P+I P Q V+ G+ + G PI+ W
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTW 41
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.2 bits (185), Expect = 1e-16
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P IR P +QT V + CV G P PT W + E GVL+
Sbjct: 9 PVIRQGP-VNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY-VSVRPGEP 291
GD G+YTCIA +G+ +AYI V P ++ P P
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAP 118
Score = 73.3 bits (180), Expect = 4e-16
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
P + P +V L C ATG P+PT+ W K R + V I
Sbjct: 9 PVIRQGPVN-QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
+ D G+Y CI +G + V+ PRP
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV-PVQPPRP 108
Score = 60.2 bits (146), Expect = 2e-11
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGETLIINGI 147
++ P Q+ + C + P TI W KD + + L I
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYA 69
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQ 191
D G Y C G A I+V +E P +
Sbjct: 70 KLGDTGRYTCIASTPSGEATWS-AYIEV--QEFGVPVQPPRPTD 110
Score = 42.4 bits (100), Expect = 3e-05
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGEL 464
S PP I PV QTV + C A G+ +I W + NG L
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64
Query: 465 R 465
+
Sbjct: 65 Q 65
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 74.4 bits (183), Expect = 1e-16
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
P + P+ ++ L+C+ATG P+P +SW+K F R + + I
Sbjct: 9 PIILQGPAN-QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
++R SD G Y C+ +S+G + V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 67.8 bits (166), Expect = 2e-14
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVL 238
P I P A+QT V A ++C G+P P +W++ F G L
Sbjct: 9 PIILQGP-ANQTLAVDGTALLKCKAT-GDPLPVISWLK--EGFTFPGRDPRATIQEQGTL 64
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
+ N+ D G YTC+A +S+G+ +A + V
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 57.4 bits (139), Expect = 9e-11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIING 146
+ P Q+ ++CK+ DP I W K+ P + TL I
Sbjct: 10 IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT-FPGRDPRATIQEQGTLQIKN 68
Query: 147 ITKADEGVYICSIQNAQGNV 166
+ +D G Y C ++ G
Sbjct: 69 LRISDTGTYTCVATSSSGET 88
Score = 43.9 bits (104), Expect = 6e-06
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ----PLQGYFPSHVVEYNGELR 465
PP I P QT+ A ++C A G I W G P ++ G L+
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 73.2 bits (180), Expect = 3e-16
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAV 329
L + + P +V PG +TL CE +P P + W+K + L V
Sbjct: 7 GLEEVQLVVEPEG-GAVAPGGTVTLTCEVPAQPSPQIHWMK-------DGVPLPLPPSPV 58
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEE--KVITVAV 362
+ + D G Y C+ +S+ + + +++++
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 62.0 bits (151), Expect = 2e-12
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVL 238
E ++ + P G + C + +PSP W++ P VL
Sbjct: 9 EEVQLVVEPE-GGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPS-------PVL 59
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
I D+G Y+C+A +S+ + + +
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 59.0 bits (143), Expect = 3e-11
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE-QLPPNMIAGETLIINGITKA 150
++ V P + G VT+ C+ PS I W KD LPP+ LI+ I
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----PVLILPEIGPQ 67
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKRE 179
D+G Y C ++ Q+ ++ + E
Sbjct: 68 DQGTYSCVATHSSHGP-QESRAVSISIIE 95
Score = 41.6 bits (98), Expect = 4e-05
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
+S S +E ++ + P V PG + C I W
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWM 45
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 76.2 bits (187), Expect = 5e-16
Identities = 41/224 (18%), Positives = 62/224 (27%), Gaps = 41/224 (18%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSA-----TIKWSKDNQ----------------- 129
V V GS +TIECK + + W +++
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 130 ------EQLPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPR 182
L + G L I + D GVY C I G +++V P
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKV---NAPY 117
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN- 241
+I+ V ++ C E G P W D+ G + FN
Sbjct: 118 NKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176
Query: 242 ----NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
I T + C +E A + + LP
Sbjct: 177 TSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 220
Score = 75.0 bits (184), Expect = 1e-15
Identities = 30/213 (14%), Positives = 53/213 (24%), Gaps = 31/213 (14%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDN------DGKFGPDVEVYQELG 236
P G I+C + W D G+ V+
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 237 --------------VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
L+ ++ D G Y C+ + G + + V P I
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNA-PYNKINQRI 124
Query: 283 YVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF--DRNLERDELTSRAVYTIAS---VRE 337
V L C+A G P V W + + ++ + S +
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT 184
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
+ + C + E + + P P
Sbjct: 185 TTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217
Score = 41.9 bits (98), Expect = 2e-04
Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 41/195 (21%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMP-----TVSWVK-------YIAPFDR-------- 317
P + V G +T+EC+ V W ++ +
Sbjct: 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSY 64
Query: 318 ----NLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
L +D+L+ I V+ DAG Y+C+ G + K ITV V + P
Sbjct: 65 RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV-NAPYNKINQ 122
Query: 373 PRPGADILPDGDE-------YYRPE----PEEGEYVYAVGSNASISCSVEPPRITLRPVR 421
D + E Y + E + + + + + + +T
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL-- 180
Query: 422 QTVKPGDIANIRCSA 436
+ C+
Sbjct: 181 -RINTTTNEIFYCTF 194
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 74.5 bits (182), Expect = 1e-15
Identities = 30/196 (15%), Positives = 44/196 (22%), Gaps = 35/196 (17%)
Query: 105 EGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQG 164
E V + C + + I W KD + + + + K G+Y C +
Sbjct: 17 EDGSVLLTC--DAEAKNITWFKDGKM-IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73
Query: 165 NVFQDY-----------------------ASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
Q Y A I + I G +
Sbjct: 74 KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVIL 133
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE-LGVLRFNNIA-TGDEGKYTCIAENSA 259
C P W D + D + L + G Y C S
Sbjct: 134 TCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 260 GKEVMNAYIHVLTLPA 275
L L A
Sbjct: 191 P----EDANFYLYLRA 202
Score = 66.8 bits (162), Expect = 5e-13
Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 39/193 (20%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
+ + D +L + TW + DGK + ++ + A G Y C
Sbjct: 12 VYDYQEDGSVLLTCDAEAKNITWFK---DGK--MIGFLTEDKKKWNLGSNAKDPRGMYQC 66
Query: 254 IAENSAGKEVMNAYI--------------------------HVLTLPAVTITPSEYVSVR 287
+ K + Y IT + Y
Sbjct: 67 KGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSI 126
Query: 288 PGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRE-SDAGQY 343
G + L C P + W I + +++ + ++ E +G Y
Sbjct: 127 SGTTVILTCPQY--PGSEILWQHNDKNIGGDED--DKNIGSDEDHLSLKEFSELEQSGYY 182
Query: 344 KCIGKNSAGTEEK 356
C + S +
Sbjct: 183 VCYPRGSKPEDAN 195
Score = 53.4 bits (127), Expect = 2e-08
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 14/133 (10%)
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCI 346
+ + L C+A ++W K D + + + + S + G Y+C
Sbjct: 16 QEDGSVLLTCDA---EAKNITWFK-----DGKMIGFLTEDKKKWNLGSNAKDPRGMYQCK 67
Query: 347 GKNSAGTEEKV---ITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAV--- 400
G + +V + A + + + D DG + + Y V
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 401 GSNASISCSVEPP 413
G+ ++C P
Sbjct: 128 GTTVILTCPQYPG 140
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 71.6 bits (176), Expect = 1e-15
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
+ P ++V GE C+ G P+PTV+W++ ++ + ++ +
Sbjct: 15 ARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-SARHQVTTTKYKSTF 72
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
I+SV+ SD G Y + +NS G +E T+ ++
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 65.1 bits (159), Expect = 2e-13
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
RI P S T G+ A C + GEP PT TW+R +V
Sbjct: 15 ARILTKPR-SMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
+++ DEG Y+ + ENS GK+ + +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 60.1 bits (146), Expect = 1e-11
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-------MIAGETLII 144
+ PR + EG C ++ +P T+ W + Q L + T I
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV-LSTSARHQVTTTKYKSTFEI 74
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
+ + +DEG Y ++N++G + ++ + K
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQK 106
Score = 34.6 bits (80), Expect = 0.010
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
RI +P TV G+ A C G ++ W
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWL 49
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 71.2 bits (175), Expect = 1e-15
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
P + PS+ +S+ G+ LT+ C TG P P V+W R + E +
Sbjct: 6 PKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSC----GGRKIHSQEQGRFHIENTD 60
Query: 331 -----TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
I V++ D G Y N G++ + + +
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 65.0 bits (159), Expect = 2e-13
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
P+I P+ + G + C GEP+P TW I G+F +E +
Sbjct: 6 PKIEALPS-DISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRF--HIENTDD 61
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL 273
L L ++ D G YT N G + IH+ ++
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 55.0 bits (133), Expect = 8e-10
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLI 143
+++ P S EG +T+ C + +P+ + WS ++ I TLI
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLI 66
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQV 175
I + K D G+Y S+ N G D A++ +
Sbjct: 67 IMDVQKQDGGLYTLSLGNEFG---SDSATVNI 95
Score = 34.6 bits (80), Expect = 0.012
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
PP+I P ++ G + + C+ G + W
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWS 40
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 71.2 bits (175), Expect = 2e-15
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P P + ++V+ G+ ++C+ +G P P +SW + P +
Sbjct: 10 PHFLQAPGD-LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
I V DAG Y CI N AG + + V +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 59.3 bits (144), Expect = 3e-11
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
P P T G + C + G P+P +W +RPD+ K + +E
Sbjct: 10 PHFLQAP-GDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKM-----LVRE 62
Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
GV L + + D G YTCIA N AG+ + + V +
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 57.4 bits (139), Expect = 1e-10
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
P + EG ++CK S P+ + W D + + P+ M+ E +LII
Sbjct: 14 QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP-VRPDSAHKMLVRENGVHSLIIEP 72
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
+T D G+Y C N G + V +E
Sbjct: 73 VTSRDAGIYTCIATNRAGQN-SFSLELVVAAKESG 106
Score = 31.2 bits (71), Expect = 0.23
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P P TV+ G + + C G + WQ
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQ 44
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 70.8 bits (174), Expect = 2e-15
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE---- 323
+ P +T + GE + + C A+G P P + W K + L D
Sbjct: 5 VLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFK----DNETLVEDSGIVL 59
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
TI VR+ D G Y C + G + +E E
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103
Score = 67.0 bits (164), Expect = 5e-14
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 173 IQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVY 232
+ V +R P I + +QT +G+ ++ C G P P W + + + +
Sbjct: 3 LTVLERVAPTITGNL-ENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
L + DEG YTC A + G + A+ + T
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 55.4 bits (134), Expect = 6e-10
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE-TLIINGITKAD 151
Q+ G + + C S +P I W KDN+ L + + G L I + K D
Sbjct: 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNET-LVEDSGIVLKDGNRNLTIRRVRKED 75
Query: 152 EGVYICSIQNAQGNVFQDYASIQVD 176
EG+Y C + G + A ++
Sbjct: 76 EGLYTCQACSVLGCA-KVEAFFIIE 99
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSHVVEYNGELR 465
P IT QT G+ + C+A G P I W + L + + N L
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 70.2 bits (172), Expect = 3e-15
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
P E + V PG+ L L C +++W++ + +R + +E+
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVE---- 63
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ +D+G Y C+ + +G++ +V V
Sbjct: 64 --VRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 67.9 bits (166), Expect = 2e-14
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGETLIINGITKA 150
V V G + + C+ D +I W +D QL + I GE + + A
Sbjct: 12 VPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDG-VQLVESNRTRITGEEVEVRDSIPA 70
Query: 151 DEGVYICSIQNAQGNVFQDYASIQV 175
D G+Y C + G+ Y S+ V
Sbjct: 71 DSGLYACVTSSPSGSD-TTYFSVNV 94
Score = 56.7 bits (137), Expect = 2e-10
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+ + S GD ++C + + W+R + + +
Sbjct: 10 WGVPVEVE-SLLVHPGDLLQLRC--RLRDDVQSINWLR--DGVQLVESNRTRITGEEVEV 64
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
+ D G Y C+ + +G + ++V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 36.3 bits (84), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 410 VEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+P + + V PGD+ +RC SI W
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQ-SINW 42
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 71.4 bits (175), Expect = 6e-15
Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 8/147 (5%)
Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS-----EYVSVRPGEPLTLECEA 298
G N+ E +A++ + + P + V G +C+
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 299 TGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
G P P V W K + + TI+ V D +Y C NS G
Sbjct: 66 EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125
Query: 356 KVITVAVEHRPEYGPISPRPGADILPD 382
+ VE + G D +
Sbjct: 126 CTAELLVETMGKEGEGEGEGEEDEEEE 152
Score = 61.8 bits (150), Expect = 1e-11
Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 6/152 (3%)
Query: 144 INGITKADEGVYICSIQNAQGNVFQDY-ASIQVDKREMPRIRIHPNASQTFIVGDRADIQ 202
++G + N N + P + G A
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI-LDMEVVEGSAARFD 62
Query: 203 CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG---VLRFNNIATGDEGKYTCIAENSA 259
C +E G P P W + DN K ++ + L + + D+ KYTC A NS
Sbjct: 63 CKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
G+ A + V T+ E E
Sbjct: 122 GEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
Score = 54.1 bits (130), Expect = 6e-09
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE-------QLPPNMIAGETLIINGI 147
T EGS +CK P + W KD+ Q+ + +L I+ +
Sbjct: 46 KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105
Query: 148 TKADEGVYICSIQNAQGNV 166
D+ Y C N+ G
Sbjct: 106 CGDDDAKYTCKAVNSLGEA 124
Score = 29.8 bits (67), Expect = 0.97
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 43/115 (37%)
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
++ + S + I N E+ + E +P
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPH------------------------ 39
Query: 392 EEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
P T + V G A C G + W
Sbjct: 40 -------------------VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMW 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 75.6 bits (186), Expect = 6e-15
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDND----GKFGPDVEVYQE 234
P I P A G A+++C A + +WI P+ G + + V +
Sbjct: 340 YAPVIVEPP-ADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
G L F N+ D G YTC+ NS G +A ++V
Sbjct: 397 -GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 70.2 bits (172), Expect = 4e-13
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)
Query: 241 NNIATGDEGKYTCIA-ENSAGKEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEA 298
+ + C N G+ + + T V + P ++V G L+C A
Sbjct: 306 DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA 365
Query: 299 TGRPMPTVSWVKYIAPFDRNLERDELTSRA-VY-----TIASVRESDAGQYKCIGKNSAG 352
+ + +VSW+ P + R V +V D G Y C+ NS G
Sbjct: 366 ST-SLTSVSWIT---PNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVG 421
Query: 353 TEEKVITVAV 362
T+ V
Sbjct: 422 NTTASATLNV 431
Score = 68.2 bits (167), Expect = 1e-12
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%)
Query: 67 RWMWLNFYSFLSLIIIC----------LAYLSP-----QANEVQVTPRQQSAPEGSQVTI 111
W+ S + C + L A + P + EG +
Sbjct: 302 WWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAEL 361
Query: 112 ECKSNDPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQG 164
+C+++ ++ W N + TL +T D G+Y C + N+ G
Sbjct: 362 KCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVG 421
Query: 165 NVFQDYASIQVDKREMPRIRIH 186
N AS ++ H
Sbjct: 422 N---TTASATLNVTGTHHHHHH 440
Score = 38.6 bits (90), Expect = 0.004
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQP 448
P +G Y+ + +C P I P V G A ++C A + S+ W
Sbjct: 321 PPNLKGRYIGEL-DQNYFTC--YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWIT 376
Query: 449 LQG-------YFPSHVVEYNGELRL 466
G Y V +G L
Sbjct: 377 PNGTVMTHGAYKVRIAVLSDGTLNF 401
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 69.4 bits (170), Expect = 6e-15
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY----TIASVRE 337
S + G P P + W + + +T+ Y + +
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71
Query: 338 SDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ G Y I KN G +EK I+ P
Sbjct: 72 MNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 61.3 bits (149), Expect = 6e-12
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
P I + I ++ G P P W + V + E
Sbjct: 5 PTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 235 L-GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
G L+ +N + G YT IA+N GK+ H + P +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 54.4 bits (131), Expect = 2e-09
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 18/105 (17%)
Query: 94 VQVTPR---QQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
V P +S I +P ++W + I +
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 141 --TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRI 183
L ++ T + G Y +N G +D I P I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHFMGWPGI 102
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 69.3 bits (170), Expect = 7e-15
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P P +S+ G ++ + +G P P VSW + D +
Sbjct: 6 PRFIQVPEN-MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHR 365
VR SDAG Y C+ KN AG + + V +
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 58.1 bits (141), Expect = 6e-11
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIINGI 147
P S EG ++ K S P+ + W + + + + MI E +LI +
Sbjct: 11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT-VQSDDLHKMIVSEKGLHSLIFEVV 69
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
+D G Y C +N G + V +E
Sbjct: 70 RASDAGAYACVAKNRAGEA-TFTVQLDVLAKE 100
Score = 56.9 bits (138), Expect = 2e-10
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
PR P + + G + + G P+P +W ++ D+ K + E
Sbjct: 6 PRFIQVP-ENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKM-----IVSE 58
Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL 271
G+ L F + D G Y C+A+N AG+ + VL
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 32.7 bits (75), Expect = 0.059
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
++ PPR P ++ G + G + W
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSW 39
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 68.2 bits (167), Expect = 2e-14
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYT-- 331
P P V V G L+C G P P V W K + A +
Sbjct: 14 PCFLRFPRP-VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ + +DAG Y C +N+AG V V P
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 63.2 bits (154), Expect = 1e-12
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
D+ P P + G A+++CV+ GEP P W + + +
Sbjct: 8 GDQGSPPCFLRFP-RPVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
L D G Y C A N+AG+ A + VL P
Sbjct: 66 GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 55.9 bits (135), Expect = 5e-10
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGIT 148
PR G++ ++C +P + W K Q+ L + + L++
Sbjct: 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQ-LAASERLSFPADGAEHGLLLTAAL 77
Query: 149 KADEGVYICSIQNAQGNV 166
D GVY+C +NA G
Sbjct: 78 PTDAGVYVCRARNAAGEA 95
Score = 34.3 bits (79), Expect = 0.016
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
PP P V G A ++C +G P + W+
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWE 48
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 68.6 bits (168), Expect = 2e-14
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLERDELTSRAV 329
P P V G+ + LEC+ + P P + W + DR + T R
Sbjct: 16 PMFIYKPQS-KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
I V + DAG Y N AG + V RP
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 61.6 bits (150), Expect = 6e-12
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP 227
+ + + P P S+ + GD ++C + P P W R + +F
Sbjct: 3 HHHHHHSHEHKRAPMFIYKP-QSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNT 60
Query: 228 D----VEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI 278
D + L ++ D G YT A N AG N + V P T+
Sbjct: 61 DRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQE--------QLPPNMIAGETLIING 146
P+ + EG V +EC+ + P + W ++N+ L + TL+I
Sbjct: 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79
Query: 147 ITKADEGVYICSIQNAQGNV 166
+ K D G Y S N G
Sbjct: 80 VNKKDAGWYTVSAVNEAGVT 99
Score = 32.4 bits (74), Expect = 0.085
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P +P + V GD + C P + W+
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWK 50
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.9 bits (166), Expect = 2e-14
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDA 340
+V + C A G PMPT+ W+K R + SV SD
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 341 GQYKCIGKNSAGTEEKVITVAV 362
G Y C+ +N G+ + V
Sbjct: 78 GNYTCVVENEYGSINHTYHLDV 99
Score = 58.2 bits (141), Expect = 5e-11
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD-----VEVYQELGVLRFNNIA 244
+ +C G P PT W++ N +F + +V + L ++
Sbjct: 17 LHAVPAANTVKFRCPAG-GNPMPTMRWLK--NGKEFKQEHRIGGYKVRNQHWSLIMESVV 73
Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVL 271
D+G YTC+ EN G ++ V+
Sbjct: 74 PSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 57.5 bits (139), Expect = 9e-11
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------TLI 143
N ++ R + P + V C + +P T++W K+ +E + I G +LI
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
+ + +D+G Y C ++N G++ + +D
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSI---NHTYHLD 98
Score = 32.0 bits (73), Expect = 0.094
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 409 SVEPPRIT----LRPVRQTVKPGDIANIRCSAIGATPISIRW 446
+ P T + V + RC A G ++RW
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW 42
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 70.9 bits (173), Expect = 3e-14
Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 32/212 (15%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDG-------KFGPDVEV 231
+ + +GD + C L+ T TW R G GP
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 232 YQELGV-------------LRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVT 277
+ L LR + DEG YTC G ++ ++ VL P T
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT 120
Query: 278 ITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDE-----LTSRAVYT 331
+ V + C +TG RP ++W + + + +T +++
Sbjct: 121 AEVQK-VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWI 179
Query: 332 IASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ + D Q C ++ + + +++TV++
Sbjct: 180 LVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
Score = 52.0 bits (124), Expect = 8e-08
Identities = 32/207 (15%), Positives = 55/207 (26%), Gaps = 43/207 (20%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDPSAT------IKWSKDNQEQ--------------- 131
VQ P Q G VT+ C P+ + W++ +
Sbjct: 2 VVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 132 --------LPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPR 182
+ +L + G+ DEG Y C ++V P+
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV--LAKPQ 118
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG------ 236
+CV G P TW + G +V L
Sbjct: 119 NTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHS--DLGGMPQTSQVPGFLSGTVTVT 175
Query: 237 -VLRFNNIATGDEGKYTCIAENSAGKE 262
+ + D + TC E+ + ++
Sbjct: 176 SLWILVPSSQVDGKQVTCKVEHESFEK 202
Score = 37.4 bits (86), Expect = 0.005
Identities = 27/198 (13%), Positives = 46/198 (23%), Gaps = 74/198 (37%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-----VSWVK---------YIAPFDRNLE- 320
V + V G+ +TL C M ++W + + +
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 321 --RDELTS--------RAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYG 369
R E + A + +R D G Y C G+ I + V
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV------- 113
Query: 370 PISPRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDI 429
+ P+ T + + +
Sbjct: 114 ----------------------------------------LAKPQNTAEVQKVQLTGEPV 133
Query: 430 ANIRCSAIGATP-ISIRW 446
RC + G P I W
Sbjct: 134 PMARCVSTGGRPPAQITW 151
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.8 bits (176), Expect = 7e-14
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY-----TIAS 334
G+ LT+ C+ + M V P + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVS----PSNEQVLSQGSNGSVSVRNGDLFFKK 307
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP 370
V+ D G Y C E + + V + +G
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 62.9 bits (153), Expect = 5e-11
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL--GVLRFNNIATGD 247
+ +GD I+C + + + W+ P N+ + G L F + D
Sbjct: 255 AWEAHLGDTLTIRCDTK-QQGMT-KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
G YTC A E ++ + V + + P E
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQFE 360
Score = 53.7 bits (129), Expect = 6e-08
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 97 TPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKA 150
A G +TI C + + S N++ L + L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 151 DEGVYICSIQNAQGNVFQDYASIQV 175
D GVY C N ++V
Sbjct: 312 DGGVYTCYAMGETFNETL-SVELKV 335
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 68.8 bits (168), Expect = 7e-14
Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 23/179 (12%)
Query: 194 IVGDRADIQC-VLEAGEPSPTQTWIRPD-------NDGKFGPDVEVYQEL--GVLRFNNI 243
+G ++ + + W R K ++ L G L+ N+
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 68
Query: 244 ATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPM 303
D G Y ++ G ++N + + L V+ P Y TL CE
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-KPMIYWE---CSNATLTCEVLEGTD 124
Query: 304 PTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ + ++ L S T++ + +KC N E ++ V
Sbjct: 125 VELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 53.8 bits (129), Expect = 1e-08
Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 35/178 (19%)
Query: 102 SAPEGSQVTIEC---KSNDPSATIKWSKDNQE------QLPPNMIAGE-------TLIIN 145
G + + + D ++W + + ++ P + +G L I
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 146 GITKADEGVYICSIQNAQGNVFQDYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCV 204
+T+ D G Y ++ + G + ++ + + + I+ S + C
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILN-KALDLRILEMVSKPMIYWECSNAT-------LTCE 118
Query: 205 LEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE 262
+ G + + + L + T + C A N +E
Sbjct: 119 VLEG-TDVELKLYQ---GKE------HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQE 166
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 38/162 (23%)
Query: 281 SEYVSVRPGEPLTLEC--EATGRPMPTVSWVK---YIAPFDRNLERDELTSR-AVY---- 330
S V G + L + V W + +A F R ++ + +
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 331 -TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
I ++ D+G Y ++ GT + +
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM--------------------VS 102
Query: 390 EPEEGEYVYAVGSNASISCSVE---PPRITLRPVRQTVKPGD 428
+P +Y SNA+++C V + L ++ ++
Sbjct: 103 KPM----IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 140
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 67.2 bits (164), Expect = 7e-14
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK-----YIA 313
G + + V P ++ T +++ GE ++C P P ++W
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQTQHALH--GEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 314 PFDRNLERDELTSRAVY---TIASVRESD-AGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
R T V TI+++ +D Y C NS G++ ++I + + G
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118
Query: 370 PIS 372
P S
Sbjct: 119 PSS 121
Score = 50.7 bits (121), Expect = 5e-08
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE--L 235
I +Q + G++ I+C + + P W + G++ + +E +
Sbjct: 16 IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75
Query: 236 GVLRFNNIATGDEG-KYTCIAENSAGKEVMNAYIHV 270
L +NI D Y C A NS G + +
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 48.0 bits (114), Expect = 4e-07
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 98 PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQ------------EQLPPNMIAGETLI 143
+ Q A G + I+C S P I WS E + TL
Sbjct: 20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLT 79
Query: 144 INGITKADEG-VYICSIQNAQGNVFQDYASIQVDKREMP 181
I+ I +AD +Y C+ N+ G D I++ ++
Sbjct: 80 ISNIVRADFQTIYNCTAWNSFG---SDTEIIRLKEQGSE 115
Score = 34.1 bits (78), Expect = 0.026
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 405 SISCSVE-----PPRITLRPVRQTVKPGDIANIRCSAIGA-TPISIRWQ 447
S S PP I+ Q G+ I+C P I W
Sbjct: 2 SSGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWS 49
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 65.8 bits (161), Expect = 1e-13
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--YIAPFDRNLERDELTSR 327
+ P+ + + +V G+ L+C G P+P ++W+ + R+ +
Sbjct: 8 MEVAPSFSSVLKD-CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE- 65
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEE 355
I D G Y C+ +N+ G
Sbjct: 66 --LHIQDALPEDHGTYTCLAENALGQVS 91
Score = 57.7 bits (140), Expect = 9e-11
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
+S P I G +QC + G P P TW+ +G+
Sbjct: 2 SSGSSGMEVAPSFSSVL-KDCAVIEGQDFVLQCSVR-GTPVPRITWLL---NGQPIQYAR 56
Query: 231 VYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
E GV L + D G YTC+AEN+ G+ +A++ V
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 56.2 bits (136), Expect = 3e-10
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE----TLIINGITKA 150
+ + EG ++C P I W + Q + E L I
Sbjct: 16 SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP-IQYARSTCEAGVAELHIQDALPE 74
Query: 151 DEGVYICSIQNAQGNV 166
D G Y C +NA G V
Sbjct: 75 DHGTYTCLAENALGQV 90
Score = 33.8 bits (78), Expect = 0.019
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 401 GSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQGYFPSH 456
GS+ S V P + V G ++CS G I W QP+Q S
Sbjct: 1 GSSGSSGMEV-APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA-RST 58
Query: 457 VVEYNGELRL 466
EL +
Sbjct: 59 CEAGVAELHI 68
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 66.4 bits (162), Expect = 1e-13
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRN------LERDELTSRAVY 330
+ E +R +E G P PT+ W+ P + ++ S
Sbjct: 10 RVVSLEEPELR--LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 67
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP----EYGPISPRP 375
+ G Y I KN GT + I P E P P
Sbjct: 68 LFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPIT 116
Score = 59.1 bits (143), Expect = 5e-11
Identities = 29/120 (24%), Positives = 38/120 (31%), Gaps = 17/120 (14%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE 234
PR+ + I+ V+ G P PT W +R E
Sbjct: 9 PRVVSLEEP----ELRLEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTL 294
G L FN + G YT IA+N G H L P S P P+T+
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS------PTPPITV 117
Score = 48.7 bits (116), Expect = 2e-07
Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 17/110 (15%)
Query: 93 EVQVTPRQQSAPEGSQV---TIECK-SNDPSATIKWSKDNQE----------QLPPNMIA 138
V PR S E IE +P T+ W + Q I+
Sbjct: 4 TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 139 GETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
L+ N T + G Y +N G +I + P +
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLG---TANQTINGHFLKEPFPVDEVS 110
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 71.7 bits (176), Expect = 1e-13
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELG 236
P I P G A+++C P + W+ P+ + P + V + G
Sbjct: 353 PFIMDAPR-DLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND-G 407
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEY 283
L F+++ D G YTC+ N AG +AY++V T T +
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG--THHHHHH 452
Score = 71.3 bits (175), Expect = 2e-13
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 13/134 (9%)
Query: 241 NNIATGDEGKYTCIA-ENSAGKEVMNAYIHVLT-LPAVTITPSEYVSVRPGEPLTLECEA 298
I T C A + G+ ++ + +++ G L+C
Sbjct: 317 EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT 376
Query: 299 TGRPMPTVSWVKYIAPFDRNLERDELTSRAVY------TIASVRESDAGQYKCIGKNSAG 352
PM +V W+ P L R + V SD G Y C+ N AG
Sbjct: 377 P--PMSSVKWLL---PNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAG 431
Query: 353 TEEKVITVAVEHRP 366
+ V
Sbjct: 432 NSNASAYLNVSTAG 445
Score = 65.2 bits (159), Expect = 1e-11
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 24/132 (18%)
Query: 67 RWMWLNFYSFLSLIIIC----------LAYLSP-----QANEVQVTPRQQSAPEGSQVTI 111
W+ + + C L + A + PR + EG +
Sbjct: 313 WWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAEL 372
Query: 112 ECKSNDPSATIKWSKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQG 164
+C++ P +++KW N L TL + + +D GVY C + N G
Sbjct: 373 KCRT-PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAG 431
Query: 165 NVFQDYASIQVD 176
N A + V
Sbjct: 432 NSNA-SAYLNVS 442
Score = 31.3 bits (71), Expect = 0.71
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 389 PEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPI-SIRWQ 447
P G Y+ V AS C P I P + G +A ++C P+ S++W
Sbjct: 332 PMHMRGRYLVEV-DQASFQC--SAPFIMDAPRDLNISEGRMAELKCR---TPPMSSVKWL 385
Query: 448 PLQGYFPSH-------VVEYNGELRL 466
G SH V +G L
Sbjct: 386 LPNGTVLSHASRHPRISVLNDGTLNF 411
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 68.6 bits (167), Expect = 2e-13
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
LR +N+ D GKY C ++ E L + A+ V + LEC
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKAL---VELKVAALGSDLHVDVKGYKDGGIHLECR 141
Query: 298 ATG-RPMPTVSWVKY----IAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAG 352
+TG P P + W I + + D + AV +R S C ++S
Sbjct: 142 STGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL 201
Query: 353 TEEKVITVAV 362
EK ++++
Sbjct: 202 GLEKTASISI 211
Score = 60.5 bits (146), Expect = 1e-10
Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 46/216 (21%)
Query: 93 EVQVTPRQQS--APEGSQVTIEC----KSNDPSATIKWSKDNQEQ--------------- 131
+ V A G + C + + +KW + Q
Sbjct: 4 QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQ 63
Query: 132 ----------LPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
L + AG+ L I+ +T +D G Y+C Q+ F + A +++ +
Sbjct: 64 SAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGD---FYEKALVELKVAAL 120
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
+ ++C P P W +N G+ P VE +
Sbjct: 121 GS---DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS--NNKGENIPTVEAPVVADGVGL 175
Query: 241 NNIAT------GDEGKYTCIAENSAGKEVMNAYIHV 270
+A +C +S A I +
Sbjct: 176 YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 40.8 bits (95), Expect = 4e-04
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVK--------------------YIA 313
+ PS + GE L C + M + WV
Sbjct: 8 LGPSGPILAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAP 66
Query: 314 PFDR-NLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPI 371
R ++ RD +T+ I +V SD+G+Y C ++ E+ ++ + V +
Sbjct: 67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV 126
Query: 372 SPRP 375
+
Sbjct: 127 DVKG 130
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 65.5 bits (159), Expect = 4e-13
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 31/114 (27%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS------------- 326
+ + V G L L+ +G P PTV W K I ++ R +
Sbjct: 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 327 ------------------RAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
R+++T+ + D G Y KN G ++ +TV V
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 47.8 bits (113), Expect = 7e-07
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 36/134 (26%)
Query: 173 IQVDKREMPRIRIHPNA----SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD 228
++E P+I + + + G++ + + G+P+PT W + G P
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPA 64
Query: 229 -------------------------------VEVYQELGVLRFNNIATGDEGKYTCIAEN 257
VE ++ + DEG YT +N
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 258 SAGKEVMNAYIHVL 271
G++ +N + V+
Sbjct: 125 PVGEDQVNLTVKVI 138
Score = 41.3 bits (96), Expect = 1e-04
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 39/115 (33%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE--------------- 140
P G+++ ++ S DP+ T+ W K +
Sbjct: 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 141 --------------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+ G K DEGVY +++N G +D ++ V
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG---EDQVNLTV 135
Score = 33.2 bits (75), Expect = 0.076
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 411 EPPRITL-----RPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
EPP+I L P V G+ + G ++ WQ
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQ 53
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 64.2 bits (157), Expect = 4e-13
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELT 325
+ + P + + +V +ATG P PT W K I + L D+
Sbjct: 3 ISSKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK-- 59
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
I SD+G Y C KNSAG+ + ++
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 59.2 bits (144), Expect = 2e-11
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV- 237
P I T A GEP PT W + G ++ ++ G
Sbjct: 5 SKPVIVTGLQ-DTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L + T D G YTC +NSAG + + +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 54.6 bits (132), Expect = 9e-10
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE---TLIINGIT 148
+ + S K + +P T W+KD + + + + L I+
Sbjct: 12 GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA-ITQGGKYKLSEDKGGFFLEIHKTD 70
Query: 149 KADEGVYICSIQNAQGNV 166
+D G+Y C+++N+ G+V
Sbjct: 71 TSDSGLYTCTVKNSAGSV 88
Score = 33.8 bits (78), Expect = 0.019
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P I TV +A A G + W
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWT 41
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 64.2 bits (157), Expect = 4e-13
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P ++ + SVR G+ + + G P P VSW++ + P R +
Sbjct: 6 PTFKVSLMD-QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
I + DAG Y C N G + + V
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 56.1 bits (136), Expect = 3e-10
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
V+ QS EG V + + +P + W ++ Q + P+ E L I
Sbjct: 10 VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP-VRPDQRRFAEEAEGGLCRLRILA 68
Query: 147 ITKADEGVYICSIQNAQGNV 166
+ D G Y C N G
Sbjct: 69 AERGDAGFYTCKAVNEYGAR 88
Score = 53.4 bits (129), Expect = 3e-09
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD---VEVYQELGV 237
P ++ Q+ G + ++ GEP P +W+R N PD E G+
Sbjct: 6 PTFKVSLM-DQSVREGQDVIMSIRVQ-GEPKPVVSWLR--NRQPVRPDQRRFAEEAEGGL 61
Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
LR GD G YTC A N G A + V
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 32.2 bits (74), Expect = 0.079
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
PP + + Q+V+ G + G + W
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSW 39
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 67.5 bits (164), Expect = 5e-13
Identities = 28/211 (13%), Positives = 56/211 (26%), Gaps = 45/211 (21%)
Query: 93 EVQVT-PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
EV+++ P G V ++C ++W ++ P + + E
Sbjct: 1 EVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVT 60
Query: 141 -----------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPR 182
L++ DE Y+C ++ + A + V + E
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV----------- 231
+ + + C G P+P TW R + ++
Sbjct: 121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE 180
Query: 232 ----YQELGVLRFNNIATGDEGKYTCIAENS 258
L + + C A S
Sbjct: 181 ASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211
Score = 61.7 bits (149), Expect = 4e-11
Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 42/206 (20%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDG---------KFGPDVEVYQ 233
+R+ + G + C W D G G +++V
Sbjct: 2 VRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61
Query: 234 ELGV-------------LRFNNIATGDEGKYTCIAE-NSAGKEVMNAYIHVL---TLPAV 276
L GDE Y C+ +AG A ++V V
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121
Query: 277 TITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKYIAPFDRNLERDE------------ 323
+ + C + G P P ++W + + +E +
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREA 181
Query: 324 ---LTSRAVYTIASVRESDAGQYKCI 346
L+ + + ++ + C
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCA 207
Score = 52.9 bits (126), Expect = 4e-08
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAP-------------------- 314
V ++ V V G+ + L+C TG + W
Sbjct: 2 VRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61
Query: 315 --FDRNLERDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYGPI 371
+L S+ +A + D Y C + +AGT E + V +PE +
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121
Query: 372 SPRPG 376
SP G
Sbjct: 122 SPNKG 126
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 64.1 bits (156), Expect = 7e-13
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
S++ + PRI HP+ G+ A + C E G P+PT W + + D
Sbjct: 1 GSLRQEDF-PPRIVEHPS-DLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDP 57
Query: 231 VYQEL----GVLRFNNIATG-----DEGKYTCIAENSAGKEV-MNAYIHVLTLP 274
+ G L F I G DEG Y C+A N G+ V +A + V
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 63.3 bits (154), Expect = 2e-12
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRA 328
P + PS+ + V GEP TL C+A GRP PT+ W K D R L S +
Sbjct: 10 PRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 329 VY----TIASVRESDAGQYKCIGKNSAGT 353
++ D G Y C+ +N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Score = 52.9 bits (127), Expect = 7e-09
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE---------TLIIN 145
P +G T+ CK+ P+ TI+W K + + + +L
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER-VETDKDDPRSHRMLLPSGSLFFL 72
Query: 146 GI-----TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH 186
I ++ DEGVY+C +N G AS++V H
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV--AAAAHHHHH 116
Score = 43.3 bits (102), Expect = 2e-05
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 404 ASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
S+ PPRI P V G+ A + C A G +I W
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 65.8 bits (160), Expect = 9e-13
Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 33/192 (17%)
Query: 94 VQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQL---------PPNMIAGE-- 140
+ +TP + G VT+ + + + I W + P +
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS 190
+L ++ + D G Y I Y + + ++ H
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLF 120
Query: 191 QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK 250
Q + + C +E + + + W N P++ V + E
Sbjct: 121 QN--MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS--------WDPRISSEQD 170
Query: 251 YTCIAENSAGKE 262
YTCIAEN+
Sbjct: 171 YTCIAENAVSNL 182
Score = 63.1 bits (153), Expect = 9e-12
Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 29/189 (15%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN------------------DGKFGPDVEVYQEL 235
I+G+ + AGE TW+ + + K G + Q
Sbjct: 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS- 69
Query: 236 GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL-TLPAVTITPSEYVSVRPGEPLTL 294
L+ +N+ D G Y ++ + + +L L + +T + L L
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHL 129
Query: 295 ECEAT-GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
C + W + + R S Y CI +N+
Sbjct: 130 TCSVEDADDNVSFRWEALGNTL--------SSQPNLTVSWDPRISSEQDYTCIAENAVSN 181
Query: 354 EEKVITVAV 362
++
Sbjct: 182 LSFSVSAQK 190
Score = 40.7 bits (95), Expect = 3e-04
Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 38/157 (24%)
Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK-----------------YIAPFDR 317
+++TP V+ GE +TL E G + ++W+ +
Sbjct: 1 MSLTPLM-VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPK 59
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGA 377
+R T +++++ D G Y+ + T+ + + ++
Sbjct: 60 QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-- 117
Query: 378 DILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPR 414
+ ++CSVE
Sbjct: 118 -----------QLFQNM------TCELHLTCSVEDAD 137
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 68.0 bits (166), Expect = 1e-12
Identities = 43/271 (15%), Positives = 77/271 (28%), Gaps = 36/271 (13%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLP--PNMIAGETLIINGITKADEGVYICSIQN 161
P G VT+ C K+++ +P I E+ ++ +T A G Y C +
Sbjct: 36 PRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSH 95
Query: 162 AQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVGDRADIQCVLEA----------G 208
S V + + + G+R +QC + G
Sbjct: 96 PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEG 155
Query: 209 EPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY- 267
+ +DG + + G Y C + ++A
Sbjct: 156 ISKDPSRLVGQIHDGVSKAN---------FSIGPMMLALAGTYRCYGSVTHTPYQLSAPS 206
Query: 268 ----IHV---LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-YIAPFDRNL 319
I V P+++ P V+ GE +TL C + + A R
Sbjct: 207 DPLDIVVTGPYEKPSLSAQPGP--KVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLP 263
Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
++ + G Y+C G
Sbjct: 264 AVRKVNRTFQADFPLGPATHGGTYRCFGSFR 294
Score = 66.1 bits (161), Expect = 3e-12
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 25/219 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P + P S G ++C + D P
Sbjct: 25 PFLSAWP--SAVVPRGGHVTLRC--HYRHRFNNFMLYK--EDRIHIPIFHGRIFQESFNM 78
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSVRPGEPL 292
+ + T G YTC + +A + + + P++ P V GE +
Sbjct: 79 SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK--SGERV 136
Query: 293 TLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKN 349
L+C + K P + + S+A ++I + + AG Y+C G
Sbjct: 137 ILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSV 195
Query: 350 SAGTEE-----KVITVAVEHRPEYGPISPRPGADILPDG 383
+ + + + V E +S +PG +
Sbjct: 196 THTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGE 234
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 68.6 bits (168), Expect = 1e-12
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVY--- 330
+ ++ V V G + C A G P P + W+ P ++L + R
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS---P-RKHLVSAKSNGRLTVFPD 440
Query: 331 ---TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ + D G Y CI N+ G + + V
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 65.1 bits (159), Expect = 1e-11
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN---DGKFGPDVEVYQELGV 237
RIR G C + G+P P W+ P K + V+ + G
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GT 442
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L D G Y CIA N+ G + M A++HV
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 59.3 bits (144), Expect = 1e-09
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN------MIAGET 141
+A +Q EG V C+ DP I W + + + T
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L + D G Y+C NA GN A + V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSM-PAHLHV 475
Score = 32.0 bits (73), Expect = 0.49
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 389 PEPEEGEYVYAVGSNASIS--CSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
PE +G+ + + + V G C A G P +I W
Sbjct: 360 PEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILW 419
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 61.9 bits (151), Expect = 3e-12
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDE----LTSRAV 329
P +T+ V G+ +P V W L+ + V
Sbjct: 9 PRITLRMRS-HRVPCGQNTRFILNVQSKPTAEVKWYH----NGVELQESSKIHYTNTSGV 63
Query: 330 YT--IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEY 368
T I D+G Y+ + N G T+ V +Y
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG-GDY 103
Score = 58.8 bits (143), Expect = 4e-11
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE 234
PRI + S G ++ +P+ W + + +
Sbjct: 3 FTLDHAPRITLRMR-SHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 235 LGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
GV L + T D G Y + N G+ A + V
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 53.5 bits (129), Expect = 2e-09
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE---- 140
A + + R P G + P+A +KW + E L +
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE-LQESSKIHYTNTSGVL 64
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
TL I D G Y N +G DYA++ V +
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEA-SDYATLDVTGGD 102
Score = 31.9 bits (73), Expect = 0.093
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
PRITLR V G + ++W
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKW 42
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 62.3 bits (151), Expect = 5e-12
Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 21/129 (16%)
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
G +S+G + P G + L CEA G P+P + W
Sbjct: 2 GSSHHHHHHSSGLVP-----RGSHMAGFVQAPLS-QQRWVGGSVELHCEAVGSPVPEIQW 55
Query: 309 VK-------------YIAPFDRNLERDELTSRAVYT--IASVRESDAGQYKCIGKNSAGT 353
A DR A T I ++ E D G Y+C N
Sbjct: 56 WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115
Query: 354 EEKVITVAV 362
V
Sbjct: 116 NHLTRAPRV 124
Score = 60.4 bits (146), Expect = 2e-11
Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 18/125 (14%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
+ + M P SQ VG ++ C G P P W
Sbjct: 12 SGLVPRGSHMAGFVQAP-LSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQL 69
Query: 231 VY---------------QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-P 274
+ + + D G Y C A N + + V +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRA 129
Query: 275 AVTIT 279
+
Sbjct: 130 QAVVL 134
Score = 55.0 bits (132), Expect = 2e-09
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 28/119 (23%)
Query: 96 VTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGE-------------- 140
P Q G V + C++ P I+W + Q +
Sbjct: 26 QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
T+ I+ + + D G Y C N + +V + A +
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRV-------KWVRAQAVVLVL 136
Score = 35.4 bits (81), Expect = 0.012
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQ 447
P+ Q G + C A+G+ I+W
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWW 56
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 60.8 bits (148), Expect = 9e-12
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAP-FDRNLERDELTSRAV 329
P + + G P+T C G P P + W K I+P D + +L
Sbjct: 9 PFFEMKLKH-YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
+ D G Y + N G + V+ GP S
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ-AVNSGPSS 109
Score = 55.1 bits (133), Expect = 1e-09
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE-- 140
S A ++ + EG VT C+ + +P I W KD ++ + P I +
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ-ISPKSDHYTIQRDLD 63
Query: 141 ---TLIINGITKADEGVYICSIQNAQGNV 166
+L T D+G Y N QG +
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRI 92
Score = 52.0 bits (125), Expect = 9e-09
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 6/99 (6%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD--VEVYQELGV- 237
P + G C + G P P W + D G
Sbjct: 9 PFFEMKLK-HYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
L D+G YT +A N G+ + V + +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 29.6 bits (67), Expect = 0.68
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S P ++ + G C G I W
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYW 42
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 60.4 bits (147), Expect = 1e-11
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIAS 334
+ +V G G+P P W K I DR + I
Sbjct: 9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68
Query: 335 VRESDAGQYKCIGKNSAGTEEKVITVAVE 363
V D+ N AG + V+
Sbjct: 69 VTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG-- 236
E P+I SQT G A + + G+P P W + + + Y
Sbjct: 4 EAPKIFERI-QSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 237 -VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L ++ D A N AG+ +A++ V
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 51.9 bits (125), Expect = 1e-08
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 96 VTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN----MIAGE----TLIING 146
+ Q+ +GS + P +W K+ + + + E L+I
Sbjct: 10 ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK-IERSDRIYWYWPEDNVCELVIRD 68
Query: 147 ITKADEGVYICSIQNAQGNV 166
+T D + N G
Sbjct: 69 VTGEDSASIMVKAINIAGET 88
Score = 33.4 bits (77), Expect = 0.028
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 409 SVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S+E P+I R QTV G A+ R +G W
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEW 39
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 60.0 bits (146), Expect = 1e-11
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-----------TLIING 146
Q G +V + + ++ A + W K+ E L LI +
Sbjct: 15 LEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVE-LTREDSFKARYRFKKDGKRHILIFSD 73
Query: 147 ITKADEGVYICSIQNAQGNVFQDYASIQVDKRE 179
+ + D G Y Q A + V++++
Sbjct: 74 VVQEDRGRYQVITNGGQCE-----AELIVEEKQ 101
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTS---R 327
P + +TP E V G+ + + E + V W+K + D R R
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGT-----EEK 356
+ + V + D G+Y+ I EEK
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAELIVEEK 100
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPD----NDGKFGPDVEVYQELG 236
I + P Q VGDR ++ E E W++ + F ++
Sbjct: 9 VLI-VTPLEDQQVFVGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 237 V--LRFNNIATGDEGKYTCIAENS 258
L F+++ D G+Y I
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGG 89
Score = 28.5 bits (64), Expect = 1.8
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S S P I Q V GD + + + W
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAV-EVSEEGAQVMW 41
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 59.7 bits (145), Expect = 2e-11
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE---- 140
S AN E CK+ P+AT+ W K E L + + E
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLE-LRASGKHQPSQEGLTL 63
Query: 141 TLIINGITKADEGVYICSIQNAQ 163
L I+ + KAD Y C I AQ
Sbjct: 64 RLTISALEKADSDTYTCDIGQAQ 86
Score = 46.2 bits (110), Expect = 9e-07
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
+ V C+ T P TV+W K + + ++ LT R
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLR-- 64
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
TI+++ ++D+ Y C G + + V+ R
Sbjct: 65 LTISALEKADSDTYTCD----IGQAQSRAQLLVQGRR 97
Score = 44.2 bits (105), Expect = 4e-06
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
+ A C + P+ T TW + + + + QE L
Sbjct: 9 NCFTEEL-TNLQVEEKGTAVFTC--KTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 239 RFNNIATGDEGKYTCIAENSAGK 261
+ + D YTC + +
Sbjct: 66 TISALEKADSDTYTCDIGQAQSR 88
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERD 322
+ V I E V V+ G T C + V W + + N
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ V T+ + D+G AG + + V +P
Sbjct: 65 QPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 12/86 (13%)
Query: 83 CLAYLSPQANEVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---- 135
+ Q V + EGS T C+ S + W D L N
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTP-LHANELNE 61
Query: 136 MIAGE----TLIINGITKADEGVYIC 157
+ A L + + D G
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYF 87
Score = 47.0 bits (112), Expect = 7e-07
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 171 ASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVE 230
+S V R I G A +C + + W E
Sbjct: 5 SSGLVQGRR-VHIIEDL-EDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNE 61
Query: 231 VYQELG---VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAV 276
+ + G VL +A D G AG + +A + V P+V
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSV 106
Score = 30.8 bits (70), Expect = 0.32
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 402 SNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ 450
S +S I V+ G A RC A + W PL
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.9 bits (143), Expect = 3e-11
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWVKYIAPFDRNLERDE------LTSR 327
A+ + G + C+ T V+W R LE E
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF----GVRQLENSEKYEITYEDGV 57
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
A+ + + + D G Y+C N G + + V+ E
Sbjct: 58 AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 54.2 bits (131), Expect = 1e-09
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGV--LRFNNIATG 246
G C +E TQ TW + E+ E GV L +I
Sbjct: 10 HAVGEEGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKL 68
Query: 247 DEGKYTCIAENSAGKEVMNAYIHV 270
D+G Y C N G++ A + V
Sbjct: 69 DDGTYRCKVVNDYGEDSSYAELFV 92
Score = 53.1 bits (128), Expect = 3e-09
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 98 PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGIT 148
EG V CK + D S + W ++ L + I E L + IT
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQ-LENSEKYEITYEDGVAILYVKDIT 66
Query: 149 KADEGVYICSIQNAQG 164
K D+G Y C + N G
Sbjct: 67 KLDDGTYRCKVVNDYG 82
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 61.8 bits (150), Expect = 3e-11
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 22/182 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
P + P G+ I C + + R D + P + +
Sbjct: 6 PTLWAEP--GSVISWGNSVTIWC-----QGTLEAREYRLDKEESPAPWDRQNPLEPKNKA 58
Query: 237 VLRFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
++ G+Y C + G + + P ++ PS V G+
Sbjct: 59 RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLV--TSGKS 116
Query: 292 LTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
+TL C+ + PM T K E +A + ++ V G Y+C
Sbjct: 117 VTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSS 175
Query: 349 NS 350
+
Sbjct: 176 HG 177
Score = 52.1 bits (125), Expect = 4e-08
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 27/144 (18%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
P + P +S G +T+ C+ T K AP+DR E ++A ++
Sbjct: 6 PTLWAEPGSVIS--WGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQ-NPLEPKNKARFS 61
Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDGDEYYRP 389
I S+ E AG+Y+C ++ G + + + + +S P +
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS-------- 113
Query: 390 EPEEGEYVYAVGSNASISCSVEPP 413
G + ++ C P
Sbjct: 114 -----------GKSVTLLCQSRSP 126
Score = 46.7 bits (111), Expect = 3e-06
Identities = 26/169 (15%), Positives = 45/169 (26%), Gaps = 32/169 (18%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-------QEQLPPNMIAGETLIINGITKADEGVYI 156
G+ VTI C+ + + K+ Q L P A I +T+ G Y
Sbjct: 17 SWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKA--RFSIPSMTEDYAGRYR 74
Query: 157 CSIQNAQGNVFQ-DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEA------- 207
C ++ G D + + P + P S G + C +
Sbjct: 75 CYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP--SPLVTSGKSVTLLCQSRSPMDTFLL 132
Query: 208 ---GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
P + + + + + G Y C
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAE---------FPMSPVTSVHGGTYRC 172
Score = 34.8 bits (80), Expect = 0.030
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQEQLP-------PNMIAGETLIINGITKADEG 153
G VT+ C+S P T K+ ++ +T G
Sbjct: 109 PLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGG 168
Query: 154 VYICS 158
Y C
Sbjct: 169 TYRCF 173
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 59.3 bits (144), Expect = 3e-11
Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIA 313
+S +A + V LP G L CE + V W K +
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR 59
Query: 314 PFDR-NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
DR +L +D I + DAG+Y C+ G E + V P
Sbjct: 60 DGDRHSLRQDGARCELQ--IRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108
Score = 50.1 bits (120), Expect = 5e-08
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 83 CLAYLSPQANEVQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MI 137
A L+ +A ++ T R + A EG+ + C+ A ++W K ++ L +
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHET-LRDGDRHSL 66
Query: 138 AGE----TLIINGITKADEGVYICSIQNAQ 163
+ L I G+ D G Y+C +
Sbjct: 67 RQDGARCELQIRGLVAEDAGEYLCMCGKER 96
Score = 44.3 bits (105), Expect = 6e-06
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
+ ++ G A ++C L W + + G + Q+ L
Sbjct: 20 IKFTEGL-RNEEATEGATAVLRCELS---KMAPVEWWKGHETLRDGDRHSLRQDGARCEL 75
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
+ + D G+Y C+ GKE +A + V +P+
Sbjct: 76 QIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108
Score = 31.6 bits (72), Expect = 0.15
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 402 SNASISCSVE------PPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S +S S P + T + G A +RC P + W
Sbjct: 3 SGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEW 51
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 59.6 bits (144), Expect = 3e-11
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVKYIAPFDRNLERDELTSRAVY---- 330
I + +V+ GE +T + + PT+ W K + L + +
Sbjct: 11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70
Query: 331 -------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP---ISPRPG 376
I +++ AG Y+C + + V P P G
Sbjct: 71 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG 126
Score = 49.2 bits (117), Expect = 2e-07
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 19/89 (21%)
Query: 97 TPRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPP---------------NMI 137
P+ + G +T K + TIKW K L + +
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 138 AGETLIINGITKADEGVYICSIQNAQGNV 166
+ I G Y C +
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101
Score = 46.5 bits (110), Expect = 1e-06
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 15/102 (14%)
Query: 190 SQTFIVGDRADIQCVLEAGEPS---PTQTWIR---------PDNDGKFGPDVEVYQELGV 237
T VG+ ++ E PT W + + E + +
Sbjct: 16 GGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
++ G Y C + + + V T
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 58.1 bits (141), Expect = 6e-11
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNM-----IAGE----TLIINGIT 148
+A G +V +EC+ ++ A +KW K+ +E + P I E LII G T
Sbjct: 14 LEDTTAYCGERVELECEVSEDDANVKWFKNGEE-IIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
KAD Y Q + A + VD + P
Sbjct: 73 KADAAEYSVMTTGGQSS-----AKLSVDLKSGP 100
Score = 49.2 bits (118), Expect = 7e-08
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 274 PAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDR-NLERDELTS 326
+ +T E + GE + LECE + V W K P R + +
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 327 RAVYTIASVRESDAGQYKCIGKNSAGT 353
I ++DA +Y + +
Sbjct: 65 I--LIIEGATKADAAEYSVMTTGGQSS 89
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDNDGKFGPDVEVYQE--LGVLRFN 241
T G+R +++C E E W I P ++ + E +L
Sbjct: 16 DTTAYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRY----RIRVEGKKHILIIE 69
Query: 242 NIATGDEGKYTCIAENSAGK 261
D +Y+ +
Sbjct: 70 GATKADAAEYSVMTTGGQSS 89
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 58.8 bits (142), Expect = 7e-11
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 288 PGEPLTLECEATGRPMPTVSWVK---------YIAPFDRNLERDELTSRAVYTIASVRES 338
+ G+P P++ W+ +I +E +
Sbjct: 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73
Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHRP-EYGPISPRP 375
+ G Y + N G I A P E+ P P P
Sbjct: 74 NNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIP 111
Score = 51.5 bits (123), Expect = 2e-08
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEV---------YQELGVLRFNNIATGDEGKYTCIAENS 258
G+P+P+ W+ + + G LR N + G YT +A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 259 AGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRP 302
G+ + + P P +P+ +G P
Sbjct: 86 FGQASASIMAAFMDNP---------FEFNPEDPIPDTNSTSGDP 120
Score = 40.7 bits (95), Expect = 1e-04
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 20/101 (19%)
Query: 98 PRQQSAPEGSQVTIECKSN----DPSATIKWSKDNQE-------------QLPPNMIAGE 140
P ++ C P+ +++W + +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
L +N T + G Y N G Q ASI + P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFMDNP 101
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 60.7 bits (146), Expect = 9e-11
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
P P V+V G L C +V W T R+V T+
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---QSDTGRSVLTV 63
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
+ S AG C+G T + + + V P +SP
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAA 106
Score = 58.0 bits (139), Expect = 6e-10
Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 9/157 (5%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
P +G + C L + + W D V+ VL N +
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLD---TSLGAVQSDTGRSVLTVRNASLS 69
Query: 247 DEGKYTCIAENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEATG-RPMP 304
G C+ + V P +T++P+ V + C A P+
Sbjct: 70 AAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALV----PGDPEVACTAHKVTPVD 125
Query: 305 TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
+ + + LE + V + D
Sbjct: 126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 162
Score = 46.0 bits (108), Expect = 7e-06
Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 11/135 (8%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSK-DNQEQLPPNMIAGETLIINGITK 149
+V+ + G+ + C+ D A+++W D + L + +
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASL 68
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
+ G +C ++Q+ P S +V ++ C
Sbjct: 69 SAAGTRVCVGSCGGR---TFQHTVQLLVYAFPNQ---LTVSPAALVPGDPEVACTAHKVT 122
Query: 210 P--SPTQTWIRPDND 222
P ++
Sbjct: 123 PVDPNALSFSLLVGG 137
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 63.3 bits (153), Expect = 9e-11
Identities = 26/175 (14%), Positives = 46/175 (26%), Gaps = 15/175 (8%)
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAY 267
P W + + L + + + +
Sbjct: 102 NGPLGNPIWNISGDPTR-------TWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154
Query: 268 IHVLTLP---AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----YIAPFDRNL 319
+ VL P + V V G+ T +C A GR + AP
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214
Query: 320 ERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
A + + + + DAG+Y+C+ + G V P P+
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269
Score = 57.5 bits (138), Expect = 6e-09
Identities = 36/244 (14%), Positives = 58/244 (23%), Gaps = 10/244 (4%)
Query: 115 SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQ 174
+N P W+ P L I+ V I +
Sbjct: 101 NNGPLGNPIWNISGD---PTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKV 157
Query: 175 VDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV--- 231
+ + G A QC G D + P E+
Sbjct: 158 LGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVT 216
Query: 232 --YQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPG 289
+ + N D GKY C+ G + N V+ P V I P + SV
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276
Query: 290 E-PLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGK 348
+ L + P V+ + + Y I + + +
Sbjct: 277 YLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLT 336
Query: 349 NSAG 352
Sbjct: 337 RPGE 340
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 57.4 bits (139), Expect = 1e-10
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIING 146
++ +G +V + DP +KW K+ QE + P+ + + L IN
Sbjct: 11 AKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQE-IRPSTKYIFEHKGCQRILFINN 69
Query: 147 ITKADEGVYICSIQNAQ 163
D+ Y + + +
Sbjct: 70 CQMTDDSEYYVTAGDEK 86
Score = 49.3 bits (118), Expect = 6e-08
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
A V G + E P V W K I P + + + R +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL- 65
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
I + + +D +Y AG E+ + V P
Sbjct: 66 FINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
Score = 43.9 bits (104), Expect = 5e-06
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGDEGKYTC 253
G R E +P W + + + + L NN D+ +Y
Sbjct: 23 GGRVRFVV--ELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80
Query: 254 IAENSAGKEVMNAYIHVLTLPA 275
AG E + + V + P+
Sbjct: 81 T----AGDEKCSTELFVRSGPS 98
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 60.7 bits (147), Expect = 1e-10
Identities = 31/214 (14%), Positives = 50/214 (23%), Gaps = 13/214 (6%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
P+ QVTI C+ N + + + PP I I + G Y C
Sbjct: 19 PKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 78
Query: 159 IQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR 218
+ + V + + I G++ C + ++
Sbjct: 79 YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC--RLDTATSMFLLLK 136
Query: 219 PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS--AGKEVMNA-YIHVLTLPA 275
Q + T G Y C + A + V
Sbjct: 137 EGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE 194
Query: 276 VTITPSEYVSVRPGEPLTLECE-ATGRPMPTVSW 308
T E + T TG W
Sbjct: 195 NTSLAPEDPTFPADTWGTYLLTTETGLQKDHALW 228
Score = 58.8 bits (142), Expect = 4e-10
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 17/177 (9%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
P I P + I C + +G
Sbjct: 8 PFIWAEP--HFMVPKEKQVTICCQG----NYGAV-EYQLHFEGSLFAVDRPKPPERINKV 60
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT---LPAVTITPSEYVSVRPGEPLT 293
++ + G+Y+CI + + ++ T++ V GE +T
Sbjct: 61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120
Query: 294 LECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
C +K +++R +A + + V + G Y+C G +
Sbjct: 121 FYCR-LDTATSMFLLLKEGR--SSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174
Score = 53.8 bits (129), Expect = 2e-08
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
P + P V + +T+ C+ + DR + E ++ +
Sbjct: 8 PFIWAEPHFMVP--KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDR-PKPPERINKVKFY 63
Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
I + AGQY CI + E ++ + V + +S PG +++
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 117
Score = 36.8 bits (85), Expect = 0.008
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 13/159 (8%)
Query: 62 YYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSAT 121
Y W S S ++ + + V P + VT C+ + ++
Sbjct: 79 YRVGELW------SEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEK-VTFYCRLDTATSM 131
Query: 122 IKWSKDNQEQLPPNMIAGE--TLIINGITKADEGVYIC--SIQNAQGNVFQDYASIQVDK 177
K+ + + +T A G Y C S N + + + V
Sbjct: 132 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV-T 190
Query: 178 REMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216
++ + P TF E G W
Sbjct: 191 GDIENTSLAPE-DPTFPADTWGTYLLTTETGLQKDHALW 228
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 60.3 bits (146), Expect = 1e-10
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 24/182 (13%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--- 237
P I S + IQC T + + + +
Sbjct: 10 PFISAKS--SPVIPLDGSVKIQCQ---AIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64
Query: 238 -LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL-----PAVTITPSEYVSVRPGEP 291
+++ G+Y C + + + ++ P ++ + PGE
Sbjct: 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL--MPGEN 122
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTS---RAVYTIASVRESDAGQYKCIGK 348
++L C + P S K + L + S A +++ V + +G Y+C G
Sbjct: 123 ISLTCSSAHIPFDRFSLAK-----EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGW 177
Query: 349 NS 350
+
Sbjct: 178 YN 179
Score = 52.6 bits (126), Expect = 5e-08
Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 31/149 (20%)
Query: 269 HVLTLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY----IAPFDRNLERD 322
P I+ S + + ++C+A R + R L +
Sbjct: 3 QEGDFPMPFISAKSSPVIP--LDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL-KF 58
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADIL 380
+ + I + + AG+Y+C + + + V +S G ++
Sbjct: 59 WNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLM 118
Query: 381 PDGDEYYRPEPEEGEYVYAVGSNASISCS 409
P G N S++CS
Sbjct: 119 P-------------------GENISLTCS 128
Score = 42.2 bits (99), Expect = 1e-04
Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 14/159 (8%)
Query: 104 PEGSQVTIECKSNDPSATIK--WSKDNQEQLPPNMIAGET-----LIINGITKADEGVYI 156
P V I+C++ + + K++ + + +I+ + G Y
Sbjct: 21 PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80
Query: 157 CSIQNAQGN-VFQDYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ 214
C + + D + V P + + G+ + C P
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSSA-HIPFDRF 137
Query: 215 TWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
+ + + + G Y C
Sbjct: 138 SLAKEGELSLPQHQSGEHP--ANFSLGPVDLNVSGIYRC 174
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 57.4 bits (139), Expect = 1e-10
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIING 146
+ +G ++ + + D A +KW K+ QE + TL I+
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQ 78
Query: 147 ITKADEGVYICSIQNAQG 164
+ AD+ Y C + +
Sbjct: 79 CSLADDAAYQCVVGGEKC 96
Score = 52.4 bits (126), Expect = 7e-09
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 266 AYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERD 322
+ + A V G + L E V W+K I +
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFE 66
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ ++ TI+ +D Y+C+ G E+ + V+
Sbjct: 67 SIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
Score = 43.9 bits (104), Expect = 6e-06
Identities = 9/101 (8%), Positives = 24/101 (23%), Gaps = 15/101 (14%)
Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW------IRPDN 221
+ +D+++ + + G + + E + W I+
Sbjct: 3 HHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSG 60
Query: 222 DGKFGPDVEVYQELGV--LRFNNIATGDEGKYTCIAENSAG 260
L + + D+ Y C+
Sbjct: 61 S-----KYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC 96
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 57.0 bits (138), Expect = 1e-10
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
PR GS E ++ ++W + + + + +A E TL + + A
Sbjct: 15 PRSVEVAAGSPAVFEAETERAGVKVRWQRGGSD-ISASNKYGLATEGTRHTLTVREVGPA 73
Query: 151 DEGVYICSIQNAQG 164
D+G Y +++
Sbjct: 74 DQGSYAVIAGSSKV 87
Score = 50.8 bits (122), Expect = 2e-08
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
+ V V G P E E V W + I+ ++ L +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT-- 64
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
T+ V +D G Y I AG+ + + V
Sbjct: 65 LTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGD 247
S G A + E W R +D + E L + D
Sbjct: 17 SVEVAAGSPAVFEA--ETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74
Query: 248 EGKYTCIAENSAGK 261
+G Y IA +S K
Sbjct: 75 QGSYAVIAGSSKVK 88
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 59.6 bits (144), Expect = 1e-10
Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 36/192 (18%)
Query: 102 SAPEGSQVTIECKSNDPSA-----TIKWSKDNQEQLP----PNMIAGE------------ 140
+ T+ C N I W K+ + L I E
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 141 -TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD---KREMPRIRIHPNASQTFIVG 196
+++I + +DEG Y C + + + F+ +V K + P I T
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPT---S 121
Query: 197 DRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT------GDEGK 250
+ I C G P P +W+ +N + + +++
Sbjct: 122 NIRRIICSTSGGFPEPHLSWL--ENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179
Query: 251 YTCIAENSAGKE 262
+ C+ + +
Sbjct: 180 FMCLIKYGHLRV 191
Score = 58.1 bits (140), Expect = 5e-10
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS---VRPGEPLTL 294
+ + DEG Y C+ ++ +TL P+ +S + +
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126
Query: 295 ECEATG-RPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIAS---VRESDAGQYKCIG 347
C +G P P +SW++ + + + +D +Y ++S + + C+
Sbjct: 127 ICSTSGGFPEPHLSWLENGEELNAINTTVSQD--PETELYAVSSKLDFNMTTNHSFMCLI 184
Query: 348 KNSAGTEEKVITV 360
K +
Sbjct: 185 KYGHLRVNQTFNW 197
Score = 39.6 bits (92), Expect = 8e-04
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECKSND--PSATIKWSKDNQEQLPPNMIAGETLII 144
LS +A+ + P + I C ++ P + W +N E+L
Sbjct: 102 LSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSW-LENGEELNAINTTVSQDPE 160
Query: 145 NG---------ITKADEGVYICSIQN 161
++C I+
Sbjct: 161 TELYAVSSKLDFNMTTNHSFMCLIKY 186
Score = 38.4 bits (89), Expect = 0.002
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 284 VSVRPGEPLTLEC--EATGRPMPTVSW--------VKYIAPFDRNL-----ERDELTSRA 328
V+ E TL C + + V + D N+ R
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 329 VYT--IASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
+ I ++R SD G Y+C + K ++ V + +P +P +
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 386 Y--------YRPEPE 392
PEP
Sbjct: 124 RRIICSTSGGFPEPH 138
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 57.3 bits (138), Expect = 2e-10
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK----YIAPFDRNLERDELTSRA 328
+ ++T +E ++V G+ LTL+C + R ++ W+ I + + ++
Sbjct: 1 MGSLT-NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 329 VY-------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE----YGPISPRP 375
+ T+ +V D G YKC+ S K + V V + P RP
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGEFCRYPSHWRP 116
Score = 48.8 bits (116), Expect = 2e-07
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 17/123 (13%)
Query: 180 MPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN------------DGKFGP 227
M + H + T G ++CV + + W+ P + K+
Sbjct: 1 MGSLTNHTE-TITVEEGQTLTLKCVTS-LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 228 DVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVR 287
+ + N+ DEG Y C+ S + VL R
Sbjct: 59 LHHSANQ-LSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYP-SHWR 115
Query: 288 PGE 290
P E
Sbjct: 116 PLE 118
Score = 44.2 bits (104), Expect = 8e-06
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE---------------T 141
+ EG +T++C S +++++W + + N +
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67
Query: 142 LIINGITKADEGVYICSIQNA 162
+ + +T DEGVY C +
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSD 88
Score = 28.8 bits (64), Expect = 1.5
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 413 PRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQG---YFPSHVVEYNGELRLGPH 469
+T TV+ G ++C S++W G + + V N + +L H
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 470 KH 471
Sbjct: 62 SA 63
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.2 bits (136), Expect = 3e-10
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
G E + ++P +W Q L + I + LI++
Sbjct: 12 LYGVEVFVGETAHFEIELSEPDVHGQWKLKGQP-LAASPDCEIIEDGKKHILILHNCQLG 70
Query: 151 DEGVYICSIQNAQ 163
G N +
Sbjct: 71 MTGEVSFQAANTK 83
Score = 47.3 bits (113), Expect = 3e-07
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
V V GE E E + P W +A + D + + +
Sbjct: 15 VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQLGM 71
Query: 340 AGQYKCIGKNSAGT 353
G+ N+
Sbjct: 72 TGEVSFQAANTKSA 85
Score = 43.8 bits (104), Expect = 6e-06
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 180 MPRIRI-HPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQE- 234
M I + P VG+ A + E EP W G+ PD E+ ++
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKL---KGQPLAASPDCEIIEDG 57
Query: 235 -LGVLRFNNIATGDEGKYTCIAENSAGK 261
+L +N G G+ + A N+
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAANTKSA 85
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 59.1 bits (142), Expect = 3e-10
Identities = 31/218 (14%), Positives = 56/218 (25%), Gaps = 49/218 (22%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK--------SNDPSATIKWSKDNQEQLPPNMIAGE---- 140
E+QV + + EG V + C + P + W +D + ++A
Sbjct: 3 ELQV-QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61
Query: 141 ---------------------TLIINGITKADEGVYICSIQN---AQGNVFQDYASIQV- 175
+L I D G Y ++ + + Q+ +++V
Sbjct: 62 RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---GEPSPTQTWIRPDNDGKFGPDVEVY 232
E P I G + C L P T +W P
Sbjct: 122 ALIEKPDIHFLEPLES----GRPTRLSCSLPGSCEAGPPLTFSWTGNAL----SPLDPET 173
Query: 233 QELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L TC + + + +
Sbjct: 174 TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 55.6 bits (133), Expect = 5e-09
Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 13/161 (8%)
Query: 211 SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
+ ++P+ G+F +V ++ L + D G Y E + +
Sbjct: 57 NNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKL 116
Query: 271 -LTLPAVTITPSEYVS--VRPGEPLTLECEAT----GRPMPTVSWVKYIAPFDRNLERDE 323
L + A+ P + + G P L C P T SW + E
Sbjct: 117 NLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN----ALSPLDPE 172
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAG--TEEKVITVAV 362
T + T+ E C K T E+ + + V
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 36.0 bits (82), Expect = 0.016
Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 8/111 (7%)
Query: 61 TYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSN---- 116
+Y+ YS+ + + ++ + G + C
Sbjct: 96 SYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE---SGRPTRLSCSLPGSCE 152
Query: 117 -DPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV 166
P T W+ + L P L + + C ++ V
Sbjct: 153 AGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 58.5 bits (141), Expect = 3e-10
Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 22/183 (12%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF--GPDVEVYQELGVLRF 240
+ P G + C P G Q + +
Sbjct: 5 ADLQPR-VAFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQRGLRWLARQLVDI--- 59
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP-AVTITPSEYVSVRPGEPLTLECEAT 299
E + C + I P V + P GE TL C
Sbjct: 60 ----REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLP-PWQPVGENFTLSCRVP 114
Query: 300 G---RPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
G R T++ ++ F + T+ + RE + C +
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGE-PPRARGAVLTATVLARREDHGANFSCRAELDL 173
Query: 352 GTE 354
Sbjct: 174 RPH 176
Score = 56.2 bits (135), Expect = 2e-09
Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 13/181 (7%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIECKSN-DPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
+ + PR G + + C +N + + + I
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR 60
Query: 149 KADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEA 207
+ E +C + A Q I+ +R + + P VG+ + C +
Sbjct: 61 E-PETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLP---PWQPVGENFTLSCRVPG 115
Query: 208 GEPSP--TQTWIRPD----NDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
P T T +R G + ++C AE
Sbjct: 116 AGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
Query: 262 E 262
Sbjct: 176 H 176
Score = 52.8 bits (126), Expect = 3e-08
Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 8/111 (7%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
+ P V G L L C + R + +
Sbjct: 5 ADLQPRV-AFVERGGSLWLNCSTNCPRPERGGLETSL----RRNGTQRGLRWLARQLVDI 59
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEY 386
RE Q C + + T + + RP+ + P P P G+ +
Sbjct: 60 RE-PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLP--PWQPVGENF 107
Score = 28.9 bits (64), Expect = 2.5
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
EP L+P V+ G + CS P
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGL 36
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 55.9 bits (135), Expect = 4e-10
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
+ Q +C+ +D T KW K+ E + P+ I+ L+I+ +
Sbjct: 15 IADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVE-VRPSKRITISHVGRFHKLVIDDVRPE 73
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMPRIR 184
DEG Y + S +++ E+
Sbjct: 74 DEGDYTFVPDGYALS-----LSAKLNFLEIKVSG 102
Score = 52.0 bits (125), Expect = 1e-08
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
++V+ E +CE + T W K + P R + + V I VR D
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV--IDDVRPED 74
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
G Y + A + + GP S
Sbjct: 75 EGDYTFVPDGYALSLS--AKLNFLEIKVSGPSS 105
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
+ A T ++A +C E + T W + + + + + L
Sbjct: 9 LEVLQDI-ADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKL 65
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVT 277
+++ DEG YT + + A ++A ++ L +
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S S + TVK + A +C + ++ +W
Sbjct: 3 SGSSGQLEVLQDIADLTVKAAEQAVFKCE-VSDEKVTGKW 41
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 57.6 bits (139), Expect = 5e-10
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 37/185 (20%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN---------------DGKFGPDVEVYQELGVL 238
I G + + TW+ N + F V++ + G L
Sbjct: 12 ITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGAL 71
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHV---LTLPAVTITPSEYVSVRPGEPLTLE 295
R N++ D G Y + + + V ++ P + S TL
Sbjct: 72 RIYNVSKEDRGDYYMRMLHETEDQ-WKITMEVYEMVSKPMIYWECSN---------ATLT 121
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEE 355
CE + + ++ L S T++ + +KC N E
Sbjct: 122 CEVLEGTDVELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 172
Query: 356 KVITV 360
++ V
Sbjct: 173 EMEVV 177
Score = 49.1 bits (117), Expect = 5e-07
Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 41/187 (21%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPS--ATIKWSKDNQEQLPPNMIAGE-------------- 140
+ +A GS VT+ + + + W +++ G+
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIV 195
L I ++K D G Y + + + ++ +++V + + + I+ S
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEM-VSKPMIYWECSNAT-- 119
Query: 196 GDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA 255
+ C + G + E + L + T + C A
Sbjct: 120 -----LTCEVLEG-TDVELKLYQGK---------EHLRSLRQKTMSYQWTNLRAPFKCKA 164
Query: 256 ENSAGKE 262
N +E
Sbjct: 165 VNRVSQE 171
Score = 34.5 bits (79), Expect = 0.038
Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 43/149 (28%)
Query: 279 TPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK----YIAPFDRNLERDELTSR------ 327
V+ G +TL ++W+ I + N ++ S
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 328 -----AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPD 382
I +V + D G Y + ++ IT+ V Y +
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEV-----YEMV----------- 106
Query: 383 GDEYYRPEPEEGEYVYAVGSNASISCSVE 411
+P +Y SNA+++C V
Sbjct: 107 ------SKPM----IYWECSNATLTCEVL 125
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 5e-10
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKADEG 153
+ +V + C+ + W KD Q+ + + ++ + LI+ D G
Sbjct: 20 LTFTTSERVVLTCELSRVDFPATWYKDGQK-VEESELLVVKMDGRKHRLILPEAKVQDSG 78
Query: 154 VYICSIQNAQGN 165
+ C +
Sbjct: 79 EFECRTEGVSAF 90
Score = 49.7 bits (119), Expect = 5e-08
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 274 PAVTITPSEY--VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSR 327
P ++P + ++ E + L CE + +W K + + ++ D R
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ + D+G+++C V V+
Sbjct: 67 --LILPEAKVQDSGEFECR----TEGVSAFFGVTVQ 96
Score = 42.0 bits (99), Expect = 3e-05
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQE--LGVLRFNNIA 244
S TF +R + C E TW + + + V + L
Sbjct: 16 DKVSLTFTTSERVVLTC--ELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAK 73
Query: 245 TGDEGKYTCIAENSAGK 261
D G++ C E +
Sbjct: 74 VQDSGEFECRTEGVSAF 90
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 55.5 bits (133), Expect = 7e-10
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 270 VLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVKYIAPFD----------R 317
P +T+ P E S G ++ C A T +W R
Sbjct: 7 DFPXPQITVQP-ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGT 353
+ + + + +V + G Y+C+ N G+
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGS 101
Score = 53.2 bits (127), Expect = 5e-09
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 82 ICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQE-------- 130
+C + PQ + V P QSA GS V+ C S+D T W DN+
Sbjct: 4 VCDDFPXPQ---ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMEN 60
Query: 131 ------QLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
Q M L + + EG Y C I N G+ + A + ++
Sbjct: 61 YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 51.6 bits (123), Expect = 2e-08
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF------ 225
D P+I + P +Q+ I G C T+ ++
Sbjct: 2 GFVCDDFPXPQITVQP-ETQSAIXGSDVSFTCSAA-SSSDSPMTFAWXXDNEALQDAEME 59
Query: 226 ------GPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAG 260
E+ + +LR N+ EG Y C+ N G
Sbjct: 60 NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
Score = 39.7 bits (92), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 405 SISCSVEP-PRITLRPVRQTVKPGDIANIRCSAIG--ATPISIRW 446
C P P+IT++P Q+ G + CSA +P++ W
Sbjct: 2 GFVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAW 46
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 54.7 bits (132), Expect = 1e-09
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
R+ A G+ T+ C+ + W KD ++ L + + L++ +A
Sbjct: 18 HREVQAEAGASATLSCEVAQAQTEVTWYKDGKK-LSSSSKVRVEAVGCTRRLVVQQAGQA 76
Query: 151 DEGVYICSIQNAQG 164
+ G Y C Q
Sbjct: 77 EAGEYSCEAGGQQL 90
Score = 52.0 bits (125), Expect = 9e-09
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAVYTIASVRESD 339
V G TL CE V+W K ++ + +E T R + +++
Sbjct: 21 VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRR--LVVQQAGQAE 77
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
AG+Y C AG ++ + V + +G
Sbjct: 78 AGEYSCE----AGGQQLSFRLQVAGQC-FG 102
Score = 41.2 bits (97), Expect = 6e-05
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIA 244
G A + C E + TW + DGK V V L
Sbjct: 20 EVQAEAGASATLSC--EVAQAQTEVTWYK---DGKKLSSSSKVRVEAVGCTRRLVVQQAG 74
Query: 245 TGDEGKYTCIAENSAGK 261
+ G+Y+C A
Sbjct: 75 QAEAGEYSCEAGGQQLS 91
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 1e-09
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
Q G V + C+ + + W KD + + + + E L+I G +
Sbjct: 15 LEDQWVAPGEDVELRCELSRAGTPVHWLKDRKA-IRKSQKYDVVCEGTMAMLVIRGASLK 73
Query: 151 DEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
D G Y C ++ ++ AS+ V+++
Sbjct: 74 DAGEYTCEVEASKST-----ASLHVEEKASG 99
Score = 50.4 bits (121), Expect = 3e-08
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
PA I P E V PGE + L CE + P V W+K I + ++ + + V
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
I DAG+Y C + S T + VE + GP S
Sbjct: 67 --IRGASLKDAGEYTCEVEASKSTAS----LHVEEKAS-GPSS 102
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
I I P Q G+ +++C L +P W++ + +V E + L
Sbjct: 9 AAI-IKPLEDQWVAPGEDVELRCELS-RAGTPV-HWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
+ D G+YTC E S A +HV +
Sbjct: 66 VIRGASLKDAGEYTCEVEASKST----ASLHVEEKAS 98
Score = 30.3 bits (69), Expect = 0.39
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW----QPLQ 450
S S P I Q V PG+ +RC A + W + ++
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCELSRA-GTPVHWLKDRKAIR 49
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 56.4 bits (135), Expect = 1e-09
Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKA-DEGVYICSIQNAQG 164
G+ V + C D +KW K+ QE + + L++ ++ D G Y+C +
Sbjct: 14 GTSVELTCPL-DSDENLKWEKNGQELPQKH---DKHLVLQDFSEVEDSGYYVCYTPASNK 69
Query: 165 NVF--------------QDYASIQVDKREMPRIRIHPNASQTFIV---GDRADIQCVLEA 207
N + +D A K++ + +V G R D +L
Sbjct: 70 NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC 129
Query: 208 GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEV 263
G T W++ DG + + N A G Y C +
Sbjct: 130 GLTDKTIKWLK---DGSIISPLNATKN--TWNLGNNAKDPRGTYQCQGAKETSNPL 180
Score = 45.6 bits (107), Expect = 8e-06
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGIT 148
Q N+ + + + V + C TIKW KD + P T +
Sbjct: 105 SQTNKAKNLVQVDGSRGDGSVLLTC--GLTDKTIKWLKDGSI-ISPLNATKNTWNLGNNA 161
Query: 149 KADEGVYICSIQNAQGNVFQDY 170
K G Y C N Q Y
Sbjct: 162 KDPRGTYQCQGAKETSNPLQVY 183
Score = 42.9 bits (100), Expect = 5e-05
Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 54/207 (26%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA-T 245
+ I G ++ C L+ W + +G+ P L + +
Sbjct: 5 NIEYKVSISGTSVELTCPLD---SDENLKWEK---NGQELPQKHDKH----LVLQDFSEV 54
Query: 246 GDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRP----------------- 288
D G Y C S + V + ++ +
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 289 -------GEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVYTIASVRES 338
+ L C T T+ W+K I+P + + + + + +
Sbjct: 115 QVDGSRGDGSVLLTCGLTD---KTIKWLKDGSIISPLNAT--------KNTWNLGNNAKD 163
Query: 339 DAGQYKCIGKNSAGTEEKVITVAVEHR 365
G Y+C G + V +R
Sbjct: 164 PRGTYQCQGAKETSN-----PLQVYYR 185
Score = 38.3 bits (88), Expect = 0.002
Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 12/142 (8%)
Query: 279 TPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRES 338
EY G + L C + W K + L + + + V
Sbjct: 4 ENIEYKVSISGTSVELTCPL--DSDENLKWEKN----GQELPQKHDKHLVLQDFSEV--E 55
Query: 339 DAGQYKCIGKNSAGTEEKVITVAV----EHRPEYGPISPRPGADILPDGDEYYRPEPEEG 394
D+G Y C S + V + + + D DG + + +
Sbjct: 56 DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQ 115
Query: 395 EYVYAVGSNASISCSVEPPRIT 416
+ ++C + I
Sbjct: 116 VDGSRGDGSVLLTCGLTDKTIK 137
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 56.0 bits (135), Expect = 2e-09
Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 29/183 (15%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
P I P + I C + +G
Sbjct: 5 PFIWAEP--HFMVPKEKQVTICCQG----NYGAV-EYQLHFEGSLFAVDRPKPPERINKV 57
Query: 237 VLRFNNIATGDEGKYTCIAENSAGK---------EVMNAYIHVLTLPAVTITPSEYVSVR 287
++ + G+Y+CI V Y P +++ P V
Sbjct: 58 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMY----DTPTLSVHPGPEV--I 111
Query: 288 PGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIG 347
GE +T C +K +++R +A + + V + G Y+C G
Sbjct: 112 SGEKVTFYCR-LDTATSMFLLLKEGR--SSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168
Query: 348 KNS 350
+
Sbjct: 169 SYN 171
Score = 55.6 bits (134), Expect = 2e-09
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
TLP I P V + +T+ C+ + DR + E ++
Sbjct: 1 TLPKPFIWAEPHFMVP--KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDR-PKPPERINK 56
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
+ I + AGQY CI + E ++ + V + +S PG +++
Sbjct: 57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114
Score = 47.9 bits (114), Expect = 1e-06
Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 11/161 (6%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
P+ QVTI C+ N + + + PP I I + G Y C
Sbjct: 16 PKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 75
Query: 159 IQNAQGNVFQ-DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWI 217
+ + + + V + + + I G++ C + +
Sbjct: 76 YRVGELWSEPSNLLDLVVTEM-YDTPTLSVHPGPEVISGEKVTFYC--RLDTATSMFLLL 132
Query: 218 RPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENS 258
+ Q + T G Y C +
Sbjct: 133 KEGRSSHVQRGYGKVQ--AEFPLGPVTTAHRGTYRCFGSYN 171
Score = 34.4 bits (79), Expect = 0.039
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 94 VQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE--TLIINGITKAD 151
+ V P + G +VT C+ + ++ K+ + + +T A
Sbjct: 102 LSVHPGPEVIS-GEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAH 160
Query: 152 EGVYIC 157
G Y C
Sbjct: 161 RGTYRC 166
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 55.3 bits (133), Expect = 3e-09
Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 33/180 (18%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN------------DGKFGPDVEVYQELGVLRFN 241
+V + P W + + F V + G L
Sbjct: 8 VVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHV-LTLPAVTITPSEYVSVRPGEPLTLECEATG 300
N+ + DE +Y + N Y+ ++ P + S TL CE
Sbjct: 66 NLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSN---------ATLTCEVLE 116
Query: 301 RPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITV 360
+ + ++ L S T++ + +KC N E ++ V
Sbjct: 117 GTDVELKLYQ---------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 54.9 bits (132), Expect = 3e-09
Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 37/181 (20%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSK--------DNQEQLPPNMIAGE--------T 141
+Q VT SN P + W K +N E + +
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADI 201
L I +T +DE Y N + V + + + I+ S +
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEM-VSKPMIYWECSNAT-------L 110
Query: 202 QCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
C + G + + E + L + T + C A N +
Sbjct: 111 TCEVLEGTDVELKLYQ----------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160
Query: 262 E 262
E
Sbjct: 161 E 161
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 41/143 (28%)
Query: 281 SEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRN--LERDELTSRAVY----- 330
S+ + +T + P+ V W K +A + + +R
Sbjct: 2 SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 331 --TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYR 388
TI ++ SD +Y+ N T + + V
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMK--FFLYVLEMV---------------------- 96
Query: 389 PEPEEGEYVYAVGSNASISCSVE 411
+P +Y SNA+++C V
Sbjct: 97 SKPM----IYWECSNATLTCEVL 115
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 53.5 bits (128), Expect = 3e-09
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 14/99 (14%)
Query: 278 ITPSEYVSVRPGEPLTLECEATGRPM---PTVSWVK-----YIAPFDRNLERDELTSRAV 329
+ + V G +T G + P V W K + ++L+ + RA
Sbjct: 8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 330 Y------TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
I + + G Y+C + + V
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 47.7 bits (113), Expect = 4e-07
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 19/88 (21%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSA---TIKWSKDNQEQLPP---------------NMIA 138
P+ G +T + + +KW K L + +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 139 GETLIINGITKADEGVYICSIQNAQGNV 166
L I A G Y C +
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFD 98
Score = 46.5 bits (110), Expect = 8e-07
Identities = 13/94 (13%), Positives = 18/94 (19%), Gaps = 13/94 (13%)
Query: 190 SQTFIVGDRADIQCVLEAGEPS--PTQTWIR------PDNDG-----KFGPDVEVYQELG 236
VG + P W + G D L
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L + G Y C + N + V
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 52.8 bits (127), Expect = 5e-09
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLPPN---MIAGE-- 140
S + + EG + EC S W+ + + + +
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKT-VGSSSRFQATRQGR 63
Query: 141 --TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
L++ +D G + S++ AS+ V +R P
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTSK-----ASLIVRERSGP 101
Score = 48.9 bits (117), Expect = 1e-07
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 6/88 (6%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--LRFNNIATGD 247
+ + G+ +CVL S W + ++ L A D
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSD 76
Query: 248 EGKYTCIAENSAGKEVMNAYIHVLTLPA 275
G+ K A + V
Sbjct: 77 AGEVVFSVRGLTSK----ASLIVRERSG 100
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 284 VSVRPGEPLTLECEAT-GRPMPTVSWVKY---IAPFDR-NLERDELTSRAVYTIASVRES 338
+ V GE + EC + W + R R + S
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI--LVVREAAPS 75
Query: 339 DAGQYKCIGKNSAGT 353
DAG+ +
Sbjct: 76 DAGEVVFSVRGLTSK 90
Score = 26.6 bits (59), Expect = 7.8
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCS-AIGATPISIRW 446
S S IT R V G+ + C + + W
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMW 43
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 54.8 bits (132), Expect = 5e-09
Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 22/175 (12%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRF 240
P ++ P S + ++C P + K YQ+ VL
Sbjct: 9 PSLQALP--SSLVPLEKPVTLRCQG----PPGVDLYR----LEKLSSSR--YQDQAVLFI 56
Query: 241 NNIATGDEGKYTCIAENSAGKEVM--NAYIHVLTL---PAVTITPSEYVSVRPGEPLTLE 295
+ G+Y C +N + + + + P+++ P +V G +TL+
Sbjct: 57 PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGP--AVSSGGDVTLQ 114
Query: 296 CEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNS 350
C+ T + K P + E RA + I +V + +G Y+C +S
Sbjct: 115 CQ-TRYGFDQFALYKEGDP--APYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166
Score = 49.4 bits (118), Expect = 3e-07
Identities = 29/194 (14%), Positives = 50/194 (25%), Gaps = 33/194 (17%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQ 163
P VT+ C+ + K + + L I + ++ G Y CS QN
Sbjct: 20 PLEKPVTLRCQGPPGVDLYRLEKLS-SSRYQDQ---AVLFIPAMKRSLAGRYRCSYQNGS 75
Query: 164 GNVFQ-DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDN 221
D + P + P G +QC + + +
Sbjct: 76 LWSLPSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQC--QTRYGFDQFALYKEGD 131
Query: 222 DGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
+ Y+ + G Y C + +S
Sbjct: 132 PAPYKNPERWYR--ASFPIITVTAAHSGTYRCYSFSSR---------------------D 168
Query: 282 EYVSVRPGEPLTLE 295
Y+ P +PL L
Sbjct: 169 PYLWSAPSDPLELV 182
Score = 46.3 bits (110), Expect = 3e-06
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 32/145 (22%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
P++ PS V +P+TL C+ + K L +AV I
Sbjct: 9 PSLQALPSSLVP--LEKPVTLRCQGP-PGVDLYRLEK--------LSSSRYQDQAVLFIP 57
Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGP--ISPRPGADILPDGDEYYRPEP 391
+++ S AG+Y+C +N + + + + +S +PG +
Sbjct: 58 AMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS---------- 107
Query: 392 EEGEYVYAVGSNASISCSVEPPRIT 416
G + ++ C
Sbjct: 108 ---------GGDVTLQCQTRYGFDQ 123
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 52.8 bits (127), Expect = 7e-09
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 270 VLTLPAVTITPSE--YVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDE 323
+ + + PS YV+ E + L CE RP V W K + L++++
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 324 LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
R V + +V+ D+G+Y C E TV V P
Sbjct: 66 TVRRLV--LPAVQLEDSGEYLC----EIDDESASFTVTVTEPP 102
Score = 52.5 bits (126), Expect = 7e-09
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
+A +V + C+ P A ++W+KD +E + + ++ E L++ +
Sbjct: 20 KVYVAAVRLERVVLTCELCRPWAEVRWTKDGEE-VVESPALLLQKEDTVRRLVLPAVQLE 78
Query: 151 DEGVYICSIQNAQ 163
D G Y+C I +
Sbjct: 79 DSGEYLCEIDDES 91
Score = 46.7 bits (111), Expect = 9e-07
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 179 EMPRIRIHPNASQ--TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELG 236
++ ++P+ + +R + C E P W + + P + + +E
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTC--ELCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 237 V--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
V L + D G+Y C E + + V P I
Sbjct: 67 VRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVRIIYSGP 110
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 55.4 bits (133), Expect = 7e-09
Identities = 34/233 (14%), Positives = 57/233 (24%), Gaps = 42/233 (18%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGITKADEGVYI 156
V ++C S+ ++ + + ++ I + + G Y
Sbjct: 19 KSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78
Query: 157 CSIQNAQGNVFQ----DYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---- 207
C D I + E P + P T + G+ + C +
Sbjct: 79 CYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP--GPTVLAGESVTLSCSSRSSYDM 136
Query: 208 ------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGK 261
GE + P +G F F G Y C
Sbjct: 137 YHLSREGEAHERRFSAGPKVNGTF-----------QADFPLGPATHGGTYRCFGSFRDSP 185
Query: 262 EVMNAYIHVLTLPAVTITPSEYV------SVRPGEPLTLECEATGRPMPTVSW 308
+ L + VT PS S G P L A + +
Sbjct: 186 YEWSNSSDPLLVS-VTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDL 237
Score = 46.1 bits (109), Expect = 9e-06
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAVY 330
P++ P V E + L+C + + + E + S+A +
Sbjct: 8 PSLLAHPGPLVK--SEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANF 64
Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-----KVITVAVEHRPEYGPISPRPGADILP 381
+I + + AG Y+C G + + + + + E +S +PG +L
Sbjct: 65 SIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLA 120
Score = 43.0 bits (101), Expect = 1e-04
Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 29/187 (15%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----- 235
P + HP + +QC +GKF + + E
Sbjct: 8 PSLLAHP--GPLVKSEETVILQC-----WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVS 60
Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSV 286
+ G Y C + ++A L + P+++ P +V
Sbjct: 61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP--TV 118
Query: 287 RPGEPLTLECEATGRPMPTVSWVKY---IAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
GE +TL C + + + T +A + + + G Y
Sbjct: 119 LAGESVTLSCS-SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTY 175
Query: 344 KCIGKNS 350
+C G
Sbjct: 176 RCFGSFR 182
Score = 28.8 bits (64), Expect = 3.7
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVY 155
+ G VT+ C S S++ + P + G Y
Sbjct: 116 PTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTY 175
Query: 156 ICS 158
C
Sbjct: 176 RCF 178
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 54.5 bits (131), Expect = 8e-09
Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 21/182 (11%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGP----DVEVYQELG 236
+ P G+ I+C + + R +G P + +
Sbjct: 6 ATLWAEP--GSVISRGNSVTIRC-----QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKA 58
Query: 237 VLRFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEP 291
++ G+Y C + AG + P ++ PS V+ GE
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVT--SGEN 116
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR---AVYTIASVRESDAGQYKCIGK 348
+TL+C + R + + L+ S A++ + V S +C G
Sbjct: 117 VTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGS 176
Query: 349 NS 350
Sbjct: 177 RR 178
Score = 51.0 bits (122), Expect = 1e-07
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSRAVYT 331
+ P +S G +T+ C+ T VK P+D E ++A ++
Sbjct: 6 ATLWAEPGSVIS--RGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQ-NPLEPKNKARFS 61
Query: 332 IASVRESDAGQYKCIGKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDG 383
I S+ E AG+Y+C + AG E + + V +S P +
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGE 115
Score = 45.6 bits (108), Expect = 8e-06
Identities = 27/202 (13%), Positives = 45/202 (22%), Gaps = 36/202 (17%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
G+ VTI C+ + + K+ Q P I +T+ G Y C
Sbjct: 17 SRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCY 76
Query: 159 IQNAQGNVFQ-DYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW 216
+ G D + V P + P S G+ +QC +
Sbjct: 77 YYSPAGWSEPSDPLELVVTGFYNKPTLSALP--SPVVTSGENVTLQC--GSRLRFDRFIL 132
Query: 217 IRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLT 272
+ G + + C
Sbjct: 133 TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH------------- 179
Query: 273 LPAVTITPSEYVSVRPGEPLTL 294
V P + L +
Sbjct: 180 --------ILQVWSEPSDLLEI 193
Score = 32.5 bits (74), Expect = 0.16
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 101 QSAPEGSQVTIECKSNDPSATIKWSKDNQE--------QLPPNMIAGETLIINGITKADE 152
G VT++C S +++ QL P+ + +T +
Sbjct: 109 PVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHR 168
Query: 153 GVYICS 158
+ C
Sbjct: 169 WMLRCY 174
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.0 bits (125), Expect = 1e-08
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGE--TLIINGITKA 150
+ + A EG+ T++C+ + A ++W K + L G L I+ ++ A
Sbjct: 15 LKTKEASEGATATLQCELS-KVAPVEWKKGPET-LRDGGRYSLKQDGTRCELQIHDLSVA 72
Query: 151 DEGVYICSIQNAQG 164
D G Y C +
Sbjct: 73 DAGEYSCMCGQERT 86
Score = 47.8 bits (114), Expect = 3e-07
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDR-NLERDELTSRAV 329
PA + G TL+CE + + V W K + R +L++D
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE-- 63
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
I + +DAG+Y C+ G E T+ V P
Sbjct: 64 LQIHDLSVADAGEYSCM----CGQERTSATLTVRALP 96
Score = 46.6 bits (111), Expect = 7e-07
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
R ++ G A +QC L W + + G + Q+ L
Sbjct: 9 ARF-TQDLKTKEASEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSE 282
+ ++++ D G+Y+C+ G+E +A + V LPA S
Sbjct: 65 QIHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEGSG 104
Score = 28.5 bits (64), Expect = 1.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S S P R T + G A ++C P + W
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCELSKVAP--VEW 40
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 55.7 bits (134), Expect = 1e-08
Identities = 39/259 (15%), Positives = 69/259 (26%), Gaps = 44/259 (16%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQEQLP----------PNMIA 138
E+QV + S G + C S P I+W + P +
Sbjct: 3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTT 62
Query: 139 GE----------TLIINGITKADEGVYICSIQNAQGNVFQDY--ASIQVDKREMPRIRIH 186
++ I+ IT AD G Y C + A ++ R P +
Sbjct: 63 VSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVV 122
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDN---DGKFGPDVEV----YQELGVL 238
+ C P T W + N D + D Y
Sbjct: 123 SGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTA 182
Query: 239 RFNNIATGDEGKYTCIAENSAG-----KEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLT 293
+ + C + + N + P + +T VR +
Sbjct: 183 KVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQVN 239
Query: 294 LECEATG-RPMP-TVSWVK 310
+ C+ P ++W++
Sbjct: 240 VTCQVRKFYPQRLQLTWLE 258
Score = 38.8 bits (90), Expect = 0.002
Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 60/190 (31%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATG-RPMPTVSWVK------------YIAPFDRNLERD 322
I P + VSV GE L C T P+ + W + F R
Sbjct: 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
Query: 323 ELTSR----AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGAD 378
E T R +I+++ +DAG Y C +
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYC---------------VKFRKGSPD--------- 100
Query: 379 ILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIG 438
+ G+ +S +P + P + C + G
Sbjct: 101 -----------------TEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHG 143
Query: 439 ATP--ISIRW 446
+P I+++W
Sbjct: 144 FSPRDITLKW 153
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 53.3 bits (128), Expect = 2e-08
Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 26/185 (14%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDV----EVYQELG 236
P + P G ++C TQ R + K P + + + G
Sbjct: 6 PTLWAEP--GSVITQGSPVTLRCQG----GQETQ-EYRLYREKKTAPWITRIPQELVKKG 58
Query: 237 VLRFNNIATGDEGKYTCIAENSAG------KEVMNAYIHVLTLPAVTITPSEYVSVRPGE 290
+I G+Y C + + P ++ PS V G
Sbjct: 59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP--VVNSGG 116
Query: 291 PLTLECEATGRPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
+TL+C+ + K + + +SRA++++ V S Y+C
Sbjct: 117 NVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARG-SSRAIFSVGPVSPSRRWWYRC 174
Query: 346 IGKNS 350
+S
Sbjct: 175 YAYDS 179
Score = 44.8 bits (106), Expect = 2e-05
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN-----QEQLPPNMIAGETLIINGITKADEGVYICS 158
+GS VT+ C+ + + ++ ++P ++ I IT G Y C
Sbjct: 17 TQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY 76
Query: 159 IQNAQGNVFQ--DYASIQVDKREM-PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT 215
+ + D + V + P + P S G +QC ++
Sbjct: 77 YGSDTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQC--DSQVAFDGFI 132
Query: 216 WIRPDNDGKFGPDVEVYQELG----VLRFNNIATGDEGKYTC 253
+ D G + ++ Y C
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
Score = 42.9 bits (101), Expect = 6e-05
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 30/149 (20%)
Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
LP T+ P ++ G P+TL C+ + + AP+ EL +
Sbjct: 2 HLPKPTLWAEPGSVIT--QGSPVTLRCQGG-QETQEYRLYREKKTAPWITR-IPQELVKK 57
Query: 328 AVYTIASVRESDAGQYKCI-GKNSAGTEEK--VITVAVEHRPEYGPISPRPGADILPDGD 384
+ I S+ G+Y+C G ++AG E + + V +S +P +
Sbjct: 58 GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS--- 114
Query: 385 EYYRPEPEEGEYVYAVGSNASISCSVEPP 413
G N ++ C +
Sbjct: 115 ----------------GGNVTLQCDSQVA 127
Score = 34.8 bits (80), Expect = 0.034
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLP--------PNMIAGETLIINGITKADEGVY 155
G VT++C S K+ +++ P + + ++ + Y
Sbjct: 113 NSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWY 172
Query: 156 ICS 158
C
Sbjct: 173 RCY 175
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 50.4 bits (121), Expect = 3e-08
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSRAV 329
+TP +V G+ + L+CE + W K + DR + + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHK-- 62
Query: 330 YTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYG 369
IA+ D G Y A V V P G
Sbjct: 63 LVIANALTEDEGDYVFA--PDAYNVTLPAKVHVISGPSSG 100
Score = 47.7 bits (114), Expect = 3e-07
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 98 PRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITK 149
Q+ G ++ ++C+ S + KW+K+ + + + + L+I
Sbjct: 14 LTDQTVNLGKEICLKCEISENI--PGKWTKNGLP-VQESDRLKVVQKGRIHKLVIANALT 70
Query: 150 ADEGVYICSIQNAQGN 165
DEG Y+ +
Sbjct: 71 EDEGDYVFAPDAYNVT 86
Score = 44.6 bits (106), Expect = 3e-06
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 190 SQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGK---FGPDVEVYQELGV--LRFNNIA 244
QT +G ++C + + W + +G ++V Q+ + L N
Sbjct: 16 DQTVNLGKEICLKCEI-SENIPGK--WTK---NGLPVQESDRLKVVQKGRIHKLVIANAL 69
Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
T DEG Y + + A +HV++ P+
Sbjct: 70 TEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 26.5 bits (59), Expect = 6.3
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S +I QTV G ++C P +W
Sbjct: 2 SSGSSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKW 39
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.4 bits (121), Expect = 4e-08
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN---MIAGE----TLIINGITKA 150
+ EG T+ C + +A +KW N L P + E L++ +
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV-LRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 151 DEGVYICSIQNAQ 163
D G Y CS +
Sbjct: 74 DSGRYSCSFGDQT 86
Score = 47.3 bits (113), Expect = 4e-07
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 284 VSVRPGEPLTLECEATGRPMPTVSWVKY---IAPFDR-NLERDELTSRAVYTIASVRESD 339
+ V G TL C + P V W + P D+ +L ++ V + ++R D
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV--VRNLRPQD 74
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPE 367
+G+Y C S G + T+ V P
Sbjct: 75 SGRYSC----SFGDQTTSATLTVTALPS 98
Score = 46.9 bits (112), Expect = 5e-07
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV--L 238
R + + G A ++CVL + +P W +N + G + QE + L
Sbjct: 9 VRFQEAL-KDLEVLEGGAATLRCVL-SSVAAPV-KWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 239 RFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
N+ D G+Y+C S G + +A + V LP+
Sbjct: 66 VVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98
Score = 30.0 bits (68), Expect = 0.44
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 407 SCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRW 446
S S P R V G A +RC ++W
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSS-VAAPVKW 41
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 51.3 bits (122), Expect = 1e-07
Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 17/171 (9%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNN 242
+ + P ++ C P + + + + ++ +
Sbjct: 5 VHVRP-KKLAVEPKGSLEVNCS--TTCNQPEVGGLETSLNK-----ILLDEQAQWKHYLV 56
Query: 243 IATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATG-- 300
+ C S +E MN+ + V P I + V G+ T+EC
Sbjct: 57 SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116
Query: 301 -RPMPTVSWVK-----YIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC 345
T+ + + F + + + A + + RE + C
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEAT-ATFNSTADREDGHRNFSC 166
Score = 45.9 bits (108), Expect = 7e-06
Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 12/180 (6%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
+ EV V P++ + + + C + + + +
Sbjct: 1 KVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL-ETSLNKILLDEQAQWKHYLVSNI 59
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRIHPNASQTFIVGDRADIQCVLEAG 208
+ + V C G +++ V + + + P VG I+C +
Sbjct: 60 SHDTVLQCHF-TCSGKQESMNSNVSVYQPPRQVILTLQP---TLVAVGKSFTIECRVPTV 115
Query: 209 EPSP--TQTWIRPD---NDGKFGPDVEVYQELGVLRFNNIATGDEGK-YTCIAENSAGKE 262
EP T R + + FG QE + D + ++C+A
Sbjct: 116 EPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR 175
Score = 31.3 bits (70), Expect = 0.43
Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 36/127 (28%)
Query: 40 VSAENHEVTVYEGGDAELKCNTYYAPGRWMWL-------------NFYSFLSLII----- 81
V ++ V G E+ C+T L + +L I
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTV 64
Query: 82 -ICLAYLSPQANE-------------VQVTPRQQSAPEGSQVTIECKSND----PSATIK 123
C S + V +T + G TIEC+ S T+
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 124 WSKDNQE 130
+ N+
Sbjct: 125 LFRGNET 131
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 52.9 bits (127), Expect = 1e-07
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPN--MIAGE----T 141
V P EG C+ + W KD++E M
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539
Query: 142 LIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L IN + D+G Y +N+ G ++ + V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTK-EEIVFLNV 572
Score = 49.8 bits (119), Expect = 1e-06
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-- 315
+ +A+ I V G+ C P V+W K
Sbjct: 466 PQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ 525
Query: 316 DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
+ + TI V+ D G+Y KNS GT+E+++ + V
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 46.8 bits (111), Expect = 1e-05
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Query: 169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPD 228
D+ E I G A+ C + P TW + D + K
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVK 528
Query: 229 VEVYQELGV--LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L N + D+G+YT A+NS G + +++V
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 49.1 bits (117), Expect = 1e-07
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 15/107 (14%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMP--TVSWVK---YIAPFDRNL---------E 320
TI + +S G + L+C + V+W + +A + +L +
Sbjct: 4 TGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKD 63
Query: 321 RDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRP 366
R T+ S+ +D G+Y C GT I + V
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 46.1 bits (109), Expect = 1e-06
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMIAGE------- 140
++ T SA +G + ++C + + W + +Q N G
Sbjct: 4 TGTIETTG-NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFK 62
Query: 141 ---------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L + +T D G Y C + ++V
Sbjct: 63 DRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 39.1 bits (91), Expect = 4e-04
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDN-------------DGKFGPDV 229
I + + G +QC L + TQ W + D F V
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 230 EVYQELGVLRFNNIATGDEGKYTC-IAENSAGKEVMNAYIHVLTLPAVTITP 280
LG L ++ D G+Y C G ++ VL
Sbjct: 66 APGPGLG-LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.2 bits (124), Expect = 1e-07
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEA-TGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
++ PG+ +TL C TV WV + R R + +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL-LL 64
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
SV+ D+G Y C AG + + V+ PE
Sbjct: 65 RSVQLHDSGNYSC---YRAGRPAGTVHLLVDVPPE 96
Score = 51.4 bits (122), Expect = 2e-07
Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 34/231 (14%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN--DPSATIKWSKDNQ---EQLPPNMIAGETLIINGI 147
+V ++ G VT+ C + +AT+ W G L++ +
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSV 67
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEA 207
D G Y C + ++ + P F +++ C
Sbjct: 68 QLHDSGNYSCYRAG------RPAGTVHLLVDVPP----EEPQLSCFRKSPLSNVVCEWGP 117
Query: 208 GEP--SPTQTWI-----RPDNDGKFGPDVEVYQELGVLR-FNNIATGDEGKYT--CIAEN 257
T+ + + F + QE + GD Y +
Sbjct: 118 RSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVAS 177
Query: 258 SAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
S G + T + P +T+ A +V+W
Sbjct: 178 SVGSK---------FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTW 219
Score = 27.5 bits (60), Expect = 9.4
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 412 PPRITLRPVRQTVKPGDIANIRCSAIGATP-ISIRW 446
P + T PGD + C + ++ W
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHW 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 91/607 (14%), Positives = 177/607 (29%), Gaps = 247/607 (40%)
Query: 6 SAGIKPTSSNQGNALTTT---PSRQETNAFAGEV--TQFVSAENHEVTVYEGGD-----A 55
+ +P + + G+ L P+ F QF + D A
Sbjct: 3 AYSTRPLTLSHGS-LEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 56 ELKCNTYYAPGRWMWLNFYSFLS-------------LIIICL-----AYLSPQANEV--- 94
EL F ++S ++ +CL YL + N++
Sbjct: 59 EL------------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDIHAL 104
Query: 95 --QVTPRQQSAPEGSQVTIEC------------KSNDPSATIKWSKDNQEQLPPNMIAGE 140
++ + ++ I+ SA + + QL
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-------- 156
Query: 141 TLIINGITKADEGVYICSIQNAQGN----------VFQDYASI------QVDKREMPRIR 184
I G QGN ++Q Y + + IR
Sbjct: 157 VAIFGG----------------QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 185 IHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKF-------GPDVEVYQ---- 233
+A + F G +I LE PS T PD D + P + V Q
Sbjct: 201 TTLDAEKVFTQG--LNILEWLE--NPSNT-----PDKD--YLLSIPISCPLIGVIQLAHY 249
Query: 234 -----ELGVLRFNNIATGDEGKYTC---------IAENSAGKEVMNAYIHVLTL------ 273
LG + + +G IAE + + + +T+
Sbjct: 250 VVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 274 ------PAVTITPS---EYVSVRPGEPLTLECEATGRPMPTVSWV------KYIAPFDRN 318
P ++ PS + + G P PM ++S + Y+ + +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVP---------SPMLSISNLTQEQVQDYVNKTNSH 359
Query: 319 LERDE--------------LTS--RAVYTIA-SVRESDAGQYKCIGKNSA---GTEEKVI 358
L + ++ +++Y + ++R++ A G + + +E K+
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS----GLDQSRIPFSERKL- 414
Query: 359 TVAVEHRPEYGPIS-P------RPGADI----LPDGDEYYRPE----PEEGEYVYAV--G 401
+R + P++ P P +D+ L + + + P VY G
Sbjct: 415 --KFSNR--FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFDG 465
Query: 402 SNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYN 461
S+ LR + G I+ I P+ +W+ + +H++++
Sbjct: 466 SD-------------LRVLS-----GSISERIVDCIIRLPV--KWETTTQFKATHILDF- 504
Query: 462 GELRLGP 468
GP
Sbjct: 505 -----GP 506
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 49.3 bits (117), Expect = 4e-07
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 26/135 (19%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASV 335
+++PS+ V + G + + C + + P + +R VY +++V
Sbjct: 2 TSVSPSK-VILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKELLLPGNNRKVYELSNV 57
Query: 336 RESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGE 395
+E Q C G + V PE ++P P
Sbjct: 58 QED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSW------------------ 97
Query: 396 YVYAVGSNASISCSV 410
VG ++ C V
Sbjct: 98 --QPVGKQLTLRCQV 110
Score = 41.6 bits (97), Expect = 1e-04
Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 16/177 (9%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSN---DPSATIKWSKDNQEQLPPNMIAGETLIINGITK 149
+ V+P + P G V + C ++ I+ +E L P + N
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSN---V 57
Query: 150 ADEGVYICSIQNAQGNVFQDYASIQVDKREMP-RIRIHPNASQTFIVGDRADIQCVLEAG 208
++ +C G Q A + P R+ + P VG + ++C +E G
Sbjct: 58 QEDSQPMCYSNCPDG---QSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGG 113
Query: 209 EPSP--TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGK-YTCIAENSAGKE 262
P T +R + + + V + V + G ++C E +
Sbjct: 114 APRAQLTVVLLR--GEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 168
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 46.4 bits (110), Expect = 8e-07
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNL----ERDELTS 326
++ V+V G L C ++ W FD R EL
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65
Query: 327 RAVYT----IASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
+ + ++ V SD GQY C + + + V P
Sbjct: 66 ASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 41.4 bits (97), Expect = 6e-05
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 192 TFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV-----------LRF 240
T + G A + C ++ + + W P + D + ++ + +
Sbjct: 17 TVVEGGTAILTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75
Query: 241 NNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLP 274
++++ DEG+YTC + + AY+ VL +P
Sbjct: 76 SDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 40.2 bits (94), Expect = 1e-04
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 95 QVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQE---------------QLPPNMIA 138
+ + EG + C+ + + +++WS Q+ +L
Sbjct: 10 FPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH 69
Query: 139 GETLIINGITKADEGVYICSIQ 160
++ ++ ++ +DEG Y CS+
Sbjct: 70 ELSISVSDVSLSDEGQYTCSLF 91
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 48.5 bits (115), Expect = 1e-06
Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 51/213 (23%)
Query: 93 EVQVT-PRQQSAPEGSQVTIECKSND------PSATIKWSKDNQEQLPPNMI-------- 137
+V++ Q P VTI C S I W + +
Sbjct: 4 KVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQ 63
Query: 138 ---------------AGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMP 181
+G+ +L + GI + G Y C + + ++Q++ P
Sbjct: 64 EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTP---LKAQGTVQLEVVASP 120
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEV--------- 231
R+ Q + + C P TW + ++
Sbjct: 121 ASRLLL--DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIK 178
Query: 232 -----YQELGVLRFNNIATGDEGKYTCIAENSA 259
+ L+ N+ Y C+ +++
Sbjct: 179 NMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHAS 211
Score = 41.2 bits (96), Expect = 4e-04
Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 25/116 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRP-----MPTVSWVKYIAPFDRNL----------- 319
V + + +T+ C ++W FD+ +
Sbjct: 5 VEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQE 64
Query: 320 ---ERDELTSR------AVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRP 366
++ A + ++ +AG+Y+C + + + + V P
Sbjct: 65 AFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP 120
Score = 40.0 bits (93), Expect = 8e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
LR I + G+Y C + K + V+ PA + + CE
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ--VGMKENEDKYMCE 141
Query: 298 ATG-RPMP-TVSWVK 310
++G P ++W K
Sbjct: 142 SSGFYPEAINITWEK 156
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 47.1 bits (112), Expect = 5e-06
Identities = 18/159 (11%), Positives = 39/159 (24%), Gaps = 25/159 (15%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
+ V + G + C+ + W Y + ++ +
Sbjct: 5 LEGRTKS-VIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESG 63
Query: 325 TSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
S Y + ++ E+D+G Y C +K+ S
Sbjct: 64 ISPGKYDTYGSTRKNLRMILRNLIENDSGVYYC-ATWDQNYYKKLFGSGTSLVVTDKQGS 122
Query: 373 PRPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVE 411
D + + V +++C E
Sbjct: 123 ADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161
Score = 37.1 bits (86), Expect = 0.008
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 24/116 (20%)
Query: 279 TPSEYVSVRPGEPLTLECEATGR-PMPTVSWVK-----------YIAPFDRNLERDELT- 325
VS+ + +TL C + W K ++N + +
Sbjct: 141 QAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSV 200
Query: 326 ------SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI-----TVAVEHRPEYGP 370
TI++++ D+ +Y C S +K+I V VE R ++
Sbjct: 201 NFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQHHH 256
Score = 32.1 bits (73), Expect = 0.31
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 24/120 (20%)
Query: 62 YYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK--SNDPS 119
+ G + + + A A +V S P VT+ C ++ S
Sbjct: 107 LFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWS 166
Query: 120 ATIKWSKDNQEQLPPNMIAGET----------------------LIINGITKADEGVYIC 157
I W K + +I + L I+ + D Y C
Sbjct: 167 YYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC 226
Score = 31.3 bits (71), Expect = 0.61
Identities = 21/172 (12%), Positives = 45/172 (26%), Gaps = 44/172 (25%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW----------------SKDNQEQLP 133
++ ++ + GS I C + + I W S + L
Sbjct: 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLE 61
Query: 134 PNMIAGET-----------LIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPR 182
+ G+ +I+ + + D GVY C+ + + + +
Sbjct: 62 SGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQG 121
Query: 183 IRIH----------------PNASQTFIVGDRADIQCVLEAGEPSPTQTWIR 218
+S + V + C+ E S W +
Sbjct: 122 SADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYK 173
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 45.7 bits (108), Expect = 8e-06
Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 29/187 (15%)
Query: 181 PRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL----- 235
P + HP + +QC +G F + + E
Sbjct: 9 PSLLAHP--GPLVKSEETVILQC-----WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVS 61
Query: 236 -GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTL--------PAVTITPSEYVSV 286
+ + G Y C + ++A L + P+++ P +V
Sbjct: 62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP--TV 119
Query: 287 RPGEPLTLECEATGRPMPTVSWVKYIAPFDRNL---ERDELTSRAVYTIASVRESDAGQY 343
GE +TL C + + +R L + T +A + + + G Y
Sbjct: 120 LAGENVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTY 176
Query: 344 KCIGKNS 350
+C G
Sbjct: 177 RCFGSFH 183
Score = 45.3 bits (107), Expect = 1e-05
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 30/148 (20%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDR---NLERDELTSRAVY 330
P++ P V E + L+C + + D E + S+A +
Sbjct: 9 PSLLAHPGPLVK--SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANF 65
Query: 331 TIASVRESDAGQYKCIGKNSAGTEE-----KVITVAVEHRPEYGPISPRPGADILPDGDE 385
+I+ + + AG Y+C G + + + + + E +S +PG +L
Sbjct: 66 SISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLA---- 121
Query: 386 YYRPEPEEGEYVYAVGSNASISCSVEPP 413
G N ++SCS
Sbjct: 122 ---------------GENVTLSCSSRSS 134
Score = 43.4 bits (102), Expect = 5e-05
Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 35/172 (20%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQ-------EQLPPNMIAGETLIINGITKADEGVYI 156
V ++C S+ ++ + ++ I+ +T+ G Y
Sbjct: 20 KSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 157 CSIQNAQGNVFQ----DYASIQV-DKREMPRIRIHPNASQTFIVGDRADIQCVLEA---- 207
C D I + E P + P T + G+ + C +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP--GPTVLAGENVTLSCSSRSSYDM 137
Query: 208 ------GEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTC 253
GE + P +G F F G Y C
Sbjct: 138 YHLSREGEAHERRLPAGPKVNGTF-----------QADFPLGPATHGGTYRC 178
Score = 29.9 bits (67), Expect = 1.1
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 15/81 (18%)
Query: 93 EVQVTPR----------QQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMI----A 138
++ + + G VT+ C S S++ +
Sbjct: 99 DIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVN 158
Query: 139 GETLIINGITKA-DEGVYICS 158
G + A G Y C
Sbjct: 159 GTFQADFPLGPATHGGTYRCF 179
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 46.9 bits (111), Expect = 1e-05
Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 20/131 (15%)
Query: 184 RIHPNASQTFIVGDRADIQCVLEA------GEPSPTQTWIRPDNDGKFGPDVEVYQELGV 237
I P S + CVL+ + W + +
Sbjct: 7 YISP-ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS 65
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECE 297
+ F +I + TC E I ++ + P +P L C
Sbjct: 66 VTFTDI-ASLNIQLTCNILTFGQLEQNVYGITII------------SGLPPEKPKNLSCI 112
Query: 298 ATGRPMPTVSW 308
W
Sbjct: 113 VNEGKKMRCEW 123
Score = 40.4 bits (94), Expect = 0.001
Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 40/242 (16%)
Query: 96 VTPRQQSAPEGSQVTIECKSN--------DPSATIKWSKDNQEQLPPNMIA-----GETL 142
++P S T C + I W N +P ++
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTIPKEQYTIINRTASSV 66
Query: 143 IINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQ--TFIVGDRAD 200
I C+I G + Q+ I + + P + + IV +
Sbjct: 67 TFTDIAS-LNIQLTCNILT-FGQLEQNVYGITI------ISGLPPEKPKNLSCIVNEGKK 118
Query: 201 IQCVLEAGEP--SPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT--GDEGKYTCIAE 256
++C + G T ++ + D + ++ + +T + AE
Sbjct: 119 MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 178
Query: 257 NSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFD 316
N+ G +T + P V P L++ + ++W P
Sbjct: 179 NALG---------KVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN---PSI 226
Query: 317 RN 318
++
Sbjct: 227 KS 228
Score = 38.1 bits (88), Expect = 0.007
Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 8/103 (7%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLEC-------EATGRPMPTVSWVKYIAPFDRNLERDELT 325
L E V+ T C + + W +
Sbjct: 2 LDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINR 61
Query: 326 SRAVYTIASVRESDAGQY-KCIGKNSAGTEEKVITVAVEHRPE 367
+ + T + + + IT+ PE
Sbjct: 62 TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPE 104
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 42.8 bits (101), Expect = 1e-05
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIA 333
P++++ PS+ VS G+ +TL C R V + E+D+ A ++ A
Sbjct: 6 PSLSLHPSQGVS--LGDTVTLRCHLP-RMAAWVQLWLN-GTLRFDKEKDKEQDAAEFSFA 61
Query: 334 SVRESDAGQYKCIGKNSAGTE 354
DAG Y+C + S
Sbjct: 62 VTNLEDAGTYQCRYQVSEPLW 82
Score = 35.1 bits (81), Expect = 0.007
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE---TLIINGITKADEGVYICSIQ 160
G VT+ C +A ++ + + + D G Y C Q
Sbjct: 17 SLGDTVTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQ 76
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 46.1 bits (108), Expect = 2e-05
Identities = 35/263 (13%), Positives = 73/263 (27%), Gaps = 40/263 (15%)
Query: 21 TTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLI 80
P ++ V V V G DA L + Y P +
Sbjct: 142 QPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASS------- 194
Query: 81 IICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPS------ATIKWSKDNQEQLPP 134
L+P + R+Q +G + + + ++ + ++
Sbjct: 195 ------LAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWG 248
Query: 135 NMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFI 194
T + + EG Y+ +I ++++ + P++ + P
Sbjct: 249 PWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG---QVTLELAVYKPPKVSLMPATLARAA 305
Query: 195 VGD-RADIQCVLEAGEPSP--TQTWIRPDNDGKFGPDVEV--------------YQELGV 237
G+ ++ C++ PS W G E G
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365
Query: 238 LRFNNIATGDEG-KYTCIAENSA 259
L+ + T G +Y C + +
Sbjct: 366 LQPPPVTTEQHGARYACRIHHPS 388
Score = 40.4 bits (93), Expect = 9e-04
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGE-PLTLEC 296
+ EG Y + + + V P V++ P+ PGE P L C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 297 EATG---RPMPTVSWVK 310
+ V W
Sbjct: 316 LVSHFYPSGGLEVEWEL 332
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 42.8 bits (101), Expect = 2e-05
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 21/94 (22%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEAT-----------GRPMPTVSWVKYIAPFDRNLERD 322
P+++ P + G +T C R + +
Sbjct: 10 PSISAEPGTVIP--LGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDV--------SQAS 59
Query: 323 ELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEK 356
S A + I SV E +AG Y+CI E+
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQ 93
Score = 28.5 bits (64), Expect = 1.8
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDN----------QEQLPPNMIAGETLIINGITKADEG 153
P GS VT C+ T + +++ + P A I+ +++ + G
Sbjct: 21 PLGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDVSQASPSESEA--RFRIDSVSEGNAG 78
Query: 154 VYICSIQNAQG 164
Y C
Sbjct: 79 PYRCIYYKPPK 89
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 45.0 bits (106), Expect = 3e-05
Identities = 34/278 (12%), Positives = 63/278 (22%), Gaps = 45/278 (16%)
Query: 98 PRQQSAPEGSQVTIECKSND---PSATIKWSKDNQEQL-----PPNMIAGET------LI 143
+ + C + + I W +D Q GE L
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT 75
Query: 144 INGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
++ + Y C + + + + I C
Sbjct: 76 LSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135
Query: 204 VLEAGEPSP---TQTWIRPDNDGKFGPDVEVYQELGVLRFNNIAT--------GDEGKYT 252
++ PS TW R + ++ +T + Y
Sbjct: 136 LVVDLAPSKGTVQLTWSR-ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQ 194
Query: 253 CIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL-----TLECEATG-RPMP-T 305
C + + + P P Y P P TL C P +
Sbjct: 195 CRVTHPHLPRALMRSTTKTSGP--RAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDIS 252
Query: 306 VSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQY 343
V W L + A ++ R++ +
Sbjct: 253 VQW----------LHNEVQLPDARHSTTQPRKTKGSGF 280
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 44.6 bits (105), Expect = 3e-05
Identities = 21/189 (11%), Positives = 45/189 (23%), Gaps = 37/189 (19%)
Query: 75 SFLSLIIICL--AYLSPQANEVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW------ 124
++ + S ++V PR +G + + C + W
Sbjct: 7 DLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKN 66
Query: 125 ------------SKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNAQGN 165
Q + + E +L I D +Y+C+
Sbjct: 67 NEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQ 126
Query: 166 VFQD-------YASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWI 217
Q + P + + + +A + C+ P +W
Sbjct: 127 DTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 186
Query: 218 RPDNDGKFG 226
+ G
Sbjct: 187 VNGKEVHSG 195
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 41.8 bits (98), Expect = 5e-05
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 30/115 (26%)
Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVKYIAPFDRNLE------------- 320
TP E + GE L C + + W+ A + +
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 321 -------RDELTSRAVY------TIASVRESDAGQYKCIGKNSAGTEEKVITVAV 362
R TS + + +++ SD G Y+C K + G K I + V
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 36.4 bits (84), Expect = 0.004
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 38/118 (32%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK-----SNDPSATIKWSK---------------DNQEQL 132
+ +G + CK + I+W +
Sbjct: 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66
Query: 133 PPNM--------------IAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+G+ ++ + + +D G Y C ++ A G I +
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG---VANKKIHL 121
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 41.7 bits (98), Expect = 6e-05
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 30/127 (23%)
Query: 271 LTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTV--SWVK------------------ 310
+ L A T E ++ G+ L ++C+ T + +W
Sbjct: 1 MELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 60
Query: 311 --YIAPFDRNLERDELTSRAVY-TIASVRESDAGQYKCIGKNSAGTEEKVI------TVA 361
+ R + D + + +++ D+G Y+C E ++ V
Sbjct: 61 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC-VIYQPPKEPHMLFDRIRLVVT 119
Query: 362 VEHRPEY 368
+EH +
Sbjct: 120 LEHHHHH 126
Score = 29.0 bits (65), Expect = 1.3
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+ + + D G+Y C I + I++
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 116
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 41.7 bits (98), Expect = 6e-05
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 31/114 (27%)
Query: 93 EVQV-TPRQQSAPEGSQVTIECKSNDPSAT------IKWSKDNQEQ-------------- 131
+V V P Q G VT+ C P+ + W++ +
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 132 ----------LPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+ +L + G+ DEG Y C ++V
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 38.3 bits (89), Expect = 8e-04
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 26/113 (23%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-----VSWVK----------------YIAP 314
V + V G+ +TL C M ++W + +
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 315 FDRNLERDELTSRAVY----TIASVRESDAGQYKC-IGKNSAGTEEKVITVAV 362
R + + +R D G Y C G+ I + V
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 31.0 bits (70), Expect = 0.27
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 24/95 (25%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQ----TWIRPDNDG-------KFGPDVEV 231
+ + +GD + C L+ T TW R G GP
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 232 YQELGV-------------LRFNNIATGDEGKYTC 253
+ L LR + DEG YTC
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 41.8 bits (98), Expect = 6e-05
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 32/111 (28%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW-------------------SKDN 128
PQA E+++ P++ A G +V + C+ S W S N
Sbjct: 2 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 61
Query: 129 QEQLPPNMIAGE------------TLIINGITKADEGVYICSIQNAQGNVF 167
+ + + + L +N +K +EG Y CS+ + F
Sbjct: 62 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 112
Score = 36.0 bits (83), Expect = 0.006
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 28/104 (26%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--------------YIAPFDRNL 319
P + I P + G+ + L CE G SW+ Y+A +
Sbjct: 5 PELRIFPK-KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKI 63
Query: 320 ERDE-LTSRAVY------------TIASVRESDAGQYKCIGKNS 350
DE L S ++ T+ + + G Y C ++
Sbjct: 64 TWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 43.0 bits (101), Expect = 6e-05
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 29/189 (15%)
Query: 94 VQVT--PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE----------- 140
QV P S EG+ + C +++W + N ++
Sbjct: 2 DQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 141 ----------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNA- 189
TL I D G Y C+ + + + ++ + ++ + P +
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ 121
Query: 190 ----SQTFIVGDRADIQCVLEAGEPSPTQ-TWIRPDNDGKFGPDVEVYQELGVLRFNNIA 244
FI+ + ++ C+++ P + +F P + +
Sbjct: 122 PPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQ 181
Query: 245 TGDEGKYTC 253
GD TC
Sbjct: 182 YGDSNSVTC 190
Score = 34.9 bits (80), Expect = 0.028
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 19/87 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +PS +S+ G L C T M +V W + Y+A + R +
Sbjct: 4 VEQSPSA-LSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 325 T------SRAVYTIASVRESDAGQYKC 345
+ I + D+G Y C
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFC 88
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 41.0 bits (95), Expect = 9e-05
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKY-----IAPFDR--NLERDELTSR 327
+ I S+ G+P LEC P V+W K + DR + + ++ S
Sbjct: 13 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 72
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGT-EEKVITVAV 362
+ V +D G Y+C + E T+ V
Sbjct: 73 FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
Score = 39.8 bits (92), Expect = 3e-04
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 172 SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW--IRPDNDGKFGPDV 229
+I + ++ I + + + GD +++C ++ P TW + K
Sbjct: 2 NIHGKESCDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ 61
Query: 230 EVYQE-----LGVLRFNNIATGDEGKYTCIAENSAG 260
++E +L F + D G Y C A +
Sbjct: 62 TSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN 97
Score = 27.1 bits (59), Expect = 5.5
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 93 EVQVTPRQQS---APEGSQVTIEC--KSNDPSATIKWSKDNQEQ---LPPNMIAGE---- 140
+VQ+ ++QS G +EC K + W K N L + +
Sbjct: 10 DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 69
Query: 141 ----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L + D G Y CS + ++ V
Sbjct: 70 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPM---PTVSW---------VKYIAPFDRNLE 320
V + + VSV G+ + + G+ + PT+ W K A F
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 321 RDELTSRAVY--TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
+ ++ I V D G Y+ K + + VE
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 36.3 bits (83), Expect = 0.004
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 13/94 (13%)
Query: 190 SQTFIVGDRADIQCVLEAGE--PSPTQTWIR---PDNDGKFGP--------DVEVYQELG 236
S + G A + + E PT W + + K G +
Sbjct: 21 SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTV 80
Query: 237 VLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHV 270
L + GD G Y + + I V
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 35.2 bits (80), Expect = 0.009
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 19/87 (21%)
Query: 97 TPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPN---------------MI 137
P S G + K TIKW K +L +
Sbjct: 18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNV 77
Query: 138 AGETLIINGITKADEGVYICSIQNAQG 164
L I + D G Y ++
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEVKAKDT 104
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEV-----YQELGV---- 237
+ +T + G ++C ++ + W P + + Q +
Sbjct: 44 WTSDETVVAGGTVVLKCQVK-DHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHE 102
Query: 238 --LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
+ +N+A DEG+YTC + + + VL +P
Sbjct: 103 LSISISNVALADEGEYTCSIFTMPVRTAK-SLVTVLGIPQ 141
Score = 37.5 bits (86), Expect = 0.002
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 285 SVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNL----ERDELTSRAVYT----IA 333
+V G + L+C+ ++ W F R +L + + I+
Sbjct: 49 TVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISIS 108
Query: 334 SVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPE 367
+V +D G+Y C + V V P+
Sbjct: 109 NVALADEGEYTCS-IFTMPVRTAKSLVTVLGIPQ 141
Score = 35.2 bits (80), Expect = 0.016
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMI------ 137
A ++ ++ Q ++ G V ++C+ + ++++WS Q+ L
Sbjct: 32 ADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91
Query: 138 --------AGE-TLIINGITKADEGVYICSIQN 161
E ++ I+ + ADEG Y CSI
Sbjct: 92 RIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 40.3 bits (94), Expect = 2e-04
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 27/102 (26%)
Query: 93 EVQVT-PRQQSAPEGSQVTIEC-----KSNDPSATIKWSKDNQEQLPPNMIAGE------ 140
+ V+ P + EGS + C + ++ W +D
Sbjct: 8 ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRL 67
Query: 141 --------------TLIINGITKADEGVYICSIQ-NAQGNVF 167
L I + D +Y+C ++ G
Sbjct: 68 APLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGT 109
Score = 30.7 bits (69), Expect = 0.37
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 20/91 (21%)
Query: 275 AVTITPSEYVSVRPGEPLTLECE----ATGRPMPTVSWVKYIAP---------------F 315
A+ ++ + G L C + +V+W +
Sbjct: 8 ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRL 67
Query: 316 DRNLERDELTSRAVY-TIASVRESDAGQYKC 345
L I VR DA Y C
Sbjct: 68 APLASSRFLHDHQAELHIRDVRGHDASIYVC 98
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
+ V G V + C + I W+ D ++ + G+TL I D
Sbjct: 7 DVYVVELDWYPDAPGEMVVLTCDTP-EEDGITWTLDQSSEVLGS---GKTLTIQVKEFGD 62
Query: 152 EGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
G Y C + S+ + ++ I ++ ++C +
Sbjct: 63 AGQYTCHKGGEVLS-----HSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGR 117
Query: 212 PTQTWIRPDN 221
T W+ +
Sbjct: 118 FTCWWLTTIS 127
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 20/144 (13%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTI 332
V + ++ PGE + L C+ ++W + + L S TI
Sbjct: 5 KKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTL-------DQSSEVLGSGKTLTI 55
Query: 333 ASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPE 392
DAGQY C + ++ + H+ E G S D P+ +
Sbjct: 56 QVKEFGDAGQYTCHKGGEVLSH----SLLLLHKKEDGIWSTDILKDQKE-------PKNK 104
Query: 393 EGEYVYAVGSNASISCSVEPPRIT 416
A + +C T
Sbjct: 105 TFLRCEAKNYSGRFTCWWLTTIST 128
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 40.4 bits (94), Expect = 3e-04
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 32/111 (28%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW-------------------SKDN 128
PQA E+++ P++ A G +V + C+ S W S N
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHN 66
Query: 129 QEQLPPNMIAGE------------TLIINGITKADEGVYICSIQNAQGNVF 167
+ + + + L +N +K +EG Y CS+ + F
Sbjct: 67 KITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 117
Score = 36.5 bits (84), Expect = 0.006
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 34/149 (22%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK--------------YIAPFDRNL 319
P + I P + + G+ + L CE G SW+ Y+A +
Sbjct: 10 PELRIFPKK-MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKI 68
Query: 320 ERDE-LTSRAVY------------TIASVRESDAGQYKCIGKNSA----GTEEKVITVAV 362
DE L S ++ T+ + + G Y C +++ + V+
Sbjct: 69 TWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVN 128
Query: 363 EHRPEYGPISPRPGADILPDGDEYYRPEP 391
+ P+ P + RPE
Sbjct: 129 STTTK--PVLRTPSPVHPTGTSQPQRPED 155
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 39.3 bits (92), Expect = 3e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
+LP +TI S +S G +T+ C + + V+ + +
Sbjct: 6 SLPDITIFPNSSLMIS--QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTE 62
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK 356
+ I V E+ G Y CI E+
Sbjct: 63 DEFEIGPVNETITGHYSCIYSKGITWSER 91
Score = 28.5 bits (64), Expect = 1.8
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQE--------QLPPNMIAGETLIINGITKADEGVY 155
+G+ VT+ C +D + ++ P I + + G Y
Sbjct: 21 SQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTED--EFEIGPVNETITGHY 78
Query: 156 ICSIQNAQG 164
C
Sbjct: 79 SCIYSKGIT 87
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.1 bits (97), Expect = 3e-04
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 98 PRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPN----MIAGETLIINGITKADEG 153
RQ G ++C A + W N + ++ + L+I +++ D G
Sbjct: 540 YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599
Query: 154 VYIC--SIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS 211
VY C + VFQ A ++ + +P+ + P S G R + ++ + +
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHH 659
Query: 212 PTQ 214
Sbjct: 660 HHH 662
Score = 39.7 bits (91), Expect = 0.002
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 210 PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKE-----VM 264
W + K L N++ GD G Y C++E + V
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 619
Query: 265 NAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEAT 299
+ V +P + P+ V G + +
Sbjct: 620 KHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVA 654
Score = 38.6 bits (88), Expect = 0.004
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 292 LTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
L+C + V W + L R I ++ E D+G Y+C+ +
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 352 GTE-------EKVITVAVEHRPEYGPISP---RPGADILPD 382
+ + V+ V V +P P G+ I
Sbjct: 610 KNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATK 650
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.9 bits (93), Expect = 3e-04
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 27/112 (24%)
Query: 278 ITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVK---------YIAPFDRNLERD-E 323
I P + G+ L C M V W + Y D++ E+ E
Sbjct: 10 IGPGHPIRALVGDEAELPCRISPGKNATGM-EVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 324 LTSRAVY------------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
R I +VR SD G Y C ++ + EE + + VE
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 37.6 bits (87), Expect = 0.002
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 36/132 (27%)
Query: 93 EVQVTPRQQS--APEGSQVTIECK-SNDPSAT---IKWSK-----------DNQEQ---- 131
+ +V A G + + C+ S +AT + W + + ++Q
Sbjct: 6 QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQ 65
Query: 132 ----------LPPNMIAGE-TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREM 180
L ++ G+ L I + +DEG Y C ++ +Q+ A++++ +
Sbjct: 66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHS---YQEEAAVELKVED- 121
Query: 181 PRIRIHPNASQT 192
P I+P S++
Sbjct: 122 PFYWINPGRSRS 133
Score = 27.6 bits (61), Expect = 5.7
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVL-TLPAVTITPSE 282
LR N+ DEG YTC + + +E A + + P I P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQE--EAAVELKVEDPFYWINPGR 130
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 39.2 bits (91), Expect = 4e-04
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 30/117 (25%)
Query: 93 EVQVTPRQQSAPEGSQVTIEC----KSNDPSATIKWSKDNQEQLPPNMIAGE-------- 140
TP + V I+C +KW + +
Sbjct: 3 PTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQA 62
Query: 141 ----------------TLIINGITKADEGVYICSI--QNAQGNVFQDYASIQVDKRE 179
+L IN + D Y C + Q GN I++ R+
Sbjct: 63 KYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
Score = 33.8 bits (77), Expect = 0.031
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 28/115 (24%)
Query: 277 TITPSEYVSVRPGEPLTLEC---EATGRPMPTVSWVK---------YIAPFDRNLE---- 320
T+ E V+ + ++C G V W+ ++ +
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 321 -------RDELTSRAVYTIASVRESDAGQYKC-----IGKNSAGTEEKVITVAVE 363
++ I +++ D Y C + +K+I + V
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 40.3 bits (94), Expect = 5e-04
Identities = 32/217 (14%), Positives = 61/217 (28%), Gaps = 36/217 (16%)
Query: 94 VQVT-PRQQSAPEGSQVTIECKSNDPSAT-----------------IKWSKDNQEQLPPN 135
++ T P + E V + C + S T I N +
Sbjct: 1 MKTTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMAS 60
Query: 136 MIAGE-----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNAS 190
+ E TLI++ T D VY C + A G + Q + +P+ +
Sbjct: 61 LAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPA 120
Query: 191 --QTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
Q C+ + + + + V + + + +A ++
Sbjct: 121 VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNK 180
Query: 249 GKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS 285
+ C + +P T PS S
Sbjct: 181 SDFACANAFNNS-----------IIPEDTFFPSPESS 206
Score = 31.9 bits (72), Expect = 0.30
Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 28/125 (22%)
Query: 284 VSVRPGEPLTLECEA-TGRPMPTVSWVK-----------YIAPFDRNLERDELT-----S 326
+ EP+ L C T + W + + + N L
Sbjct: 9 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRK 68
Query: 327 RAVYTIASVRESDAGQYKCIGKNS-----------AGTEEKVITVAVEHRPEYGPISPRP 375
+ + DA Y CI + GT V P +
Sbjct: 69 SSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDSK 128
Query: 376 GADIL 380
+D
Sbjct: 129 SSDKS 133
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 38.9 bits (91), Expect = 5e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 272 TLPAVTIT--PSEYVSVRPGEPLTLECEATGRPMPTVSWVKY--IAPFDRNLERDELTSR 327
+LP +TI S +S G +T+ C + + V+ + +
Sbjct: 6 SLPDITIFPNSSLMIS--QGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTE 62
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEK 356
+ I V E+ G Y CI E+
Sbjct: 63 DEFEIGPVNETITGHYSCIYSKGITWSER 91
Score = 28.9 bits (65), Expect = 1.2
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 104 PEGSQVTIECKSNDPSATIKWSKDNQE--------QLPPNMIAGETLIINGITKADEGVY 155
+G+ VT+ C +D + ++ P I + + G Y
Sbjct: 21 SQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTED--EFEIGPVNETITGHY 78
Query: 156 ICSIQNAQG 164
C
Sbjct: 79 SCIYSKGIT 87
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 40.3 bits (94), Expect = 5e-04
Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 30/186 (16%)
Query: 94 VQVT--PRQQSAPEGSQVTIECK-SNDPSATIKW---------------SKDNQEQLPPN 135
+ V P+ EG C + + W + + E+
Sbjct: 1 LNVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGR 60
Query: 136 MIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH-P 187
+ A L I G D Y+C+ F S+ V +P I+ P
Sbjct: 61 ISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTV----IPNIQNPDP 116
Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247
Q C+ + + + + V + + + +A +
Sbjct: 117 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSN 176
Query: 248 EGKYTC 253
+ + C
Sbjct: 177 KSDFAC 182
Score = 30.7 bits (69), Expect = 0.71
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 19/88 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +P + V+ G+ C + W + + ++ +
Sbjct: 3 VEQSPQ-SLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRI 61
Query: 325 T-------SRAVYTIASVRESDAGQYKC 345
+ + I + D+ Y C
Sbjct: 62 SATLNTKEGYSYLYIKGSQPEDSATYLC 89
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 39.1 bits (90), Expect = 6e-04
Identities = 19/129 (14%), Positives = 34/129 (26%), Gaps = 29/129 (22%)
Query: 40 VSAENHEVTVYEGGDAELKCNTYYAPG------RWMWLNFYSFLSLIIICLA-YLSPQAN 92
V + EV V+ GG EL C+ A W+ + + +
Sbjct: 7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 66
Query: 93 EVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADE 152
V+ ++S + P+ L + + D
Sbjct: 67 FVESDSYKESFGDFLGRASVANLAAPT----------------------LRLTHVHPQDG 104
Query: 153 GVYICSIQN 161
G Y C +
Sbjct: 105 GRYWCQVAQ 113
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 40.1 bits (94), Expect = 7e-04
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 19/89 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRN------ 318
P V+V G L L C+ + P + W D
Sbjct: 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNG 64
Query: 319 --LERDELTSRAVYTIASVRESDAGQYKC 345
E + S ASV SD+ Y C
Sbjct: 65 FEAEFSKSDSSFHLRKASVHRSDSAVYFC 93
Score = 34.3 bits (79), Expect = 0.060
Identities = 18/91 (19%), Positives = 23/91 (25%), Gaps = 22/91 (24%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAP--------- 314
AVT +P GE +TL C T + W + Y
Sbjct: 139 AVTQSPRN-KVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDV 196
Query: 315 FDRNLERDELTSRAVYTIASVRESDAGQYKC 345
D T+ S S Y C
Sbjct: 197 PDGYKATRTTQEDFFLTLESASPSQTSLYFC 227
Score = 33.5 bits (77), Expect = 0.10
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 26/91 (28%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQLP 133
E VT PR + G VT+ C+ + + W + + Q
Sbjct: 137 EAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQIGDV 196
Query: 134 PNMIAGE-------TLIINGITKADEGVYIC 157
P+ L + + + +Y C
Sbjct: 197 PDGYKATRTTQEDFFLTLESASPSQTSLYFC 227
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 38.5 bits (90), Expect = 0.001
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE------------TLII 144
PR + S V C +N A W + Q P +++ E TL I
Sbjct: 23 HPRFAAKKRSSMVKFHCYTNHSGALT-WFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTI 81
Query: 145 NGITKADEGVYIC 157
I D G+Y C
Sbjct: 82 QNIQYEDNGIYFC 94
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 38.0 bits (88), Expect = 0.001
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 38/128 (29%)
Query: 273 LPAVTITPSEYVSVRPGEPLTLEC----EATGRPMPTVSWVKYIAP-------------- 314
+ V + V + G + L C G + V+W + AP
Sbjct: 1 MQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMG 60
Query: 315 --------------FDRNLERDELTSRAVYTIAS-----VRESDAGQYKC-IGKNSAGTE 354
F + + A A+ + D G Y C G+
Sbjct: 61 PSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSV 120
Query: 355 EKVITVAV 362
+ + V
Sbjct: 121 RGMTWLRV 128
Score = 36.9 bits (85), Expect = 0.003
Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 43/128 (33%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIEC-----KSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
Q VQV + G V + C + + W + + N+ A
Sbjct: 2 QDVRVQV-LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMG 60
Query: 141 ---------------------------------TLIINGITKADEGVYICSIQNAQGNVF 167
TL ++G+T DEG Y C
Sbjct: 61 PSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSV 120
Query: 168 QDYASIQV 175
+ ++V
Sbjct: 121 RGMTWLRV 128
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 37.9 bits (88), Expect = 0.001
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 31/113 (27%)
Query: 93 EVQVTPRQQSAPEGSQVTIEC-------KSNDPSATIKWSKDNQEQLPPNMIAGE----- 140
V P+ GS + I C T W D + + +G+
Sbjct: 3 GVSS-PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVD 61
Query: 141 ------------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
L++ + D G Y + + N + D V
Sbjct: 62 KRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTV 114
Score = 27.5 bits (61), Expect = 4.0
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITP 280
L ++ D G Y E S + T+ T+T
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSN--RWLDVKGTTV---TVTT 118
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGET---LII 144
P + ++ S S+ + C AT W + L I
Sbjct: 497 CPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCILFI 556
Query: 145 NGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+T G Y C Q G+ F++ Q+
Sbjct: 557 ENLTAQQYGHYFCEAQE--GSYFREAQHWQL 585
Score = 36.1 bits (82), Expect = 0.027
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAG 341
+ VS+ P L C T SW +++ E + + I ++ G
Sbjct: 508 QKVSLAPNSRYYLSCPMES-RHATYSWRHKENV-EQSCEPGHQSPNCILFIENLTAQQYG 565
Query: 342 QYKCI 346
Y C
Sbjct: 566 HYFCE 570
Score = 34.6 bits (78), Expect = 0.068
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 210 PSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIA-ENSAGKEV 263
T +W +N + +L N+ G Y C A E S +E
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPN-CILFIENLTAQQYGHYFCEAQEGSYFREA 580
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 39.6 bits (92), Expect = 0.001
Identities = 23/181 (12%), Positives = 42/181 (23%), Gaps = 35/181 (19%)
Query: 70 WLNFYSFLSLIIICLAYLSPQANEVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW--- 124
F I+ V+ P + +G V + C + W
Sbjct: 3 ENPVVHFFKNIVTPRGGSGGGGGGAGVSQTPSNKVTEKGKYVELRCDPISGHTALYWYRQ 62
Query: 125 ---------------SKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICSIQNA 162
+ LP + TL I + D VY+C+
Sbjct: 63 SLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSAL 122
Query: 163 QGNVFQDYASIQVDKREMPRIRIHPNA------SQTFIVGDRADIQCVLEAGEPSP-TQT 215
+ ++ E + P +A + C+ P +
Sbjct: 123 GDTQYFG-PGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 181
Query: 216 W 216
W
Sbjct: 182 W 182
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 37.9 bits (88), Expect = 0.001
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 23/92 (25%)
Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTV--SWVK--------------------YIAP 314
T E ++ G+ L ++C+ T + +W +
Sbjct: 2 TKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQ 61
Query: 315 FDRNLERDELTSRAVY-TIASVRESDAGQYKC 345
R + D + + +++ D+G Y+C
Sbjct: 62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 93
Score = 27.5 bits (61), Expect = 4.3
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+ + + D G+Y C I + I++
Sbjct: 77 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 45/329 (13%), Positives = 96/329 (29%), Gaps = 92/329 (27%)
Query: 20 LTTTPSRQETNAFAGEVTQFVSAENHEVTVYEGGDAEL--KC-NTYYA------------ 64
L TT +Q T+ + T +S ++H +T+ L K +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 65 ------------PGRW-MW--LNFYSFLSLIIICLAYLSPQANEVQVTPRQQSA-PEGSQ 108
W W +N ++I L L P E + + S P +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAH 386
Query: 109 VTIECKSNDPSATIK--WSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNV 166
+ P+ + W D + ++ L + + SI ++
Sbjct: 387 I--------PTILLSLIWF-DVIKSDVMVVV--NKLHKYSLVEKQPKESTISIP----SI 431
Query: 167 FQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQT---W------- 216
+ + ++ + H ++ + D +I ++ + P +
Sbjct: 432 YLELKVKLENEYAL-----H----RSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 217 -IRPDNDGKFGPDVEVYQELGVL----RFNNIATGDEG-------------KYTCIAENS 258
++ + V+ + L R ++ A G Y I +N
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDND 538
Query: 259 AGKEVM-NAYIHVLTLPAVTITPSEYVSV 286
E + NA + L + S+Y +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDL 567
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 39.8 bits (93), Expect = 0.002
Identities = 68/369 (18%), Positives = 113/369 (30%), Gaps = 75/369 (20%)
Query: 93 EVQVTPRQQSAPE----GSQVTIECKSNDPSA-TIKWSKDNQEQLPPNMIAGET------ 141
E +T Q G +VTI C + T+ W + P +I +
Sbjct: 1 ESVLT---QPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGV 57
Query: 142 --------------LIINGITKADEGVYICSIQNAQGNVFQDYASIQV----DKREMPRI 183
L I+G+ DE Y C+ N+ N + +V + P +
Sbjct: 58 PTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTV 117
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTW-----IRPDNDGKFGPDVE---VYQE 234
+ P +S+ + ++A + C++ P T W P + Y
Sbjct: 118 TLFPPSSEE-LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAA 176
Query: 235 LGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPL-- 292
L Y+C + + A T PS + +
Sbjct: 177 SSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT--VAPTECSASTKGPSVFPLAPSSKSTSG 234
Query: 293 ---TLECEATG-RPMP-TVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKC-- 345
L C P P TVSW LTS V+T +V +S G Y
Sbjct: 235 GTAALGCLVKDYFPQPVTVSW-----------NSGALTS-GVHTFPAVLQSS-GLYSLSS 281
Query: 346 ---IGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEGEYVYAVGS 402
+ +S GT + V H+P + R LP + P+ + + +
Sbjct: 282 VVTVPSSSLGT--QTYICNVNHKPSNTKVDKRVEPLSLPSVFLF---PPKPKDTLM-ISR 335
Query: 403 NASISCSVE 411
++C V
Sbjct: 336 TPEVTCVVV 344
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 84 LAYLSPQANEVQV---TPRQQSAPEGSQVTIECKSNDPSATIKW-SKDNQEQLPPNMIAG 139
Y +P+ + +PR + G V + C N S + W K ++ P +
Sbjct: 8 DRYRNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLE 67
Query: 140 E------------TLIINGITKADEGVYICS 158
+ TL I GI D G+Y C
Sbjct: 68 KGRMEESQNESLATLTIQGIRFEDNGIYFCQ 98
Score = 27.0 bits (60), Expect = 8.5
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYI---APFDRNLERDELT-----S 326
+ +P +++ + G + + C K P LE+ + S
Sbjct: 20 RIWQSPR-FIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNES 78
Query: 327 RAVYTIASVRESDAGQYKCIGKNS--------AGTE 354
A TI +R D G Y C K + GTE
Sbjct: 79 LATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTE 114
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 276 VTITPSEYVSVRPGEPLTLECEAT-GRPMPTVSWVKY-----IAPFDR-----NLERDEL 324
+ I + S GE +EC P V+W K+ + + E +
Sbjct: 16 LNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS 75
Query: 325 TSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKVITVAV 362
V + SD G Y C ++ +T+ V
Sbjct: 76 VPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 35.6 bits (81), Expect = 0.007
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR-------PDNDG-KFGPDVEVYQ 233
++ I N+ + G+ I+C ++ P TW + P G + E +
Sbjct: 15 QLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENR 74
Query: 234 ELGV--LRFNNIATGDEGKYTCIAENSAG 260
+ V L F I D G Y+C ++
Sbjct: 75 SVPVFVLHFKPIHLSDNGSYSCSTNFNSQ 103
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKA-DEGVYICSI 159
G+ V + C P + I W +++ + L + ++ G Y+C
Sbjct: 21 GTTVILTCPQ-YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79
Query: 160 QNAQGNVFQDY 170
+ ++ Y
Sbjct: 80 RGSKPEDANFY 90
Score = 32.1 bits (72), Expect = 0.11
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 7/89 (7%)
Query: 176 DKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQEL 235
EM I P + I G + C P W D + D +
Sbjct: 3 GNEEMGGITQTPY--KVSISGTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSD 57
Query: 236 G--VLRFNNIATGDEGKYTCIAENSAGKE 262
+ G Y C S ++
Sbjct: 58 EDHLSLKEFSELEQSGYYVCYPRGSKPED 86
Score = 29.0 bits (64), Expect = 1.0
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 278 ITPSEY-VSVRPGEPLTLECEATGRPMPTVSWVKYIAPF-DRNLERDELTSRAVYTIASV 335
IT + Y VS+ G + L C P + W +++ + ++
Sbjct: 10 ITQTPYKVSIS-GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 66
Query: 336 RE-SDAGQYKCIGKNSAGTEEK 356
E +G Y C + S +
Sbjct: 67 SELEQSGYYVCYPRGSKPEDAN 88
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 38.5 bits (89), Expect = 0.003
Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 35/169 (20%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW------------------SKDNQEQL 132
+V P Q G VT+ C W + +L
Sbjct: 2 GPKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKL 61
Query: 133 PPNMIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYA-------SIQVDKR 178
+ + E TL I D VY C+ Q + +
Sbjct: 62 FKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNV 121
Query: 179 EMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTWIRPDNDGKFG 226
P + + + +A + C+ P +W + G
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 170
Score = 28.8 bits (64), Expect = 3.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
P V PS + + G+ +TL C+ W K
Sbjct: 3 PKVLQIPS-HQIIDMGQMVTLNCDPVSN-HLYFYWYK 37
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.003
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 89 PQANEVQVTPRQQSAPEGSQVTIECKSNDPS--ATIKWSKDNQEQL------PPNMIAGE 140
+ Q + GS VT+ + P + W +++ +
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK 61
Query: 141 ------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKR-EMPRIRI 185
L I+ + K D YI + GN + +QV P I+I
Sbjct: 62 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKI 119
Score = 34.1 bits (78), Expect = 0.022
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 16/99 (16%)
Query: 280 PSEYVSVRPGEPLTLECEAT-GRPMPTVSWVK----YIAPFDRNL---------ERDEL- 324
+++V G +TL + ++W I +D R L
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 325 TSRAVYTIASVRESDAGQYKCIGKNSAG-TEEKVITVAV 362
I+ V++ D Y G +E I + V
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 31.4 bits (71), Expect = 0.19
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 18/103 (17%)
Query: 194 IVGDRADIQCVLEAGEPSPTQTWIRPDN--------------DGKFGPDVEVYQELGVLR 239
+ G + E TW + + KF V + + G L
Sbjct: 17 VSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALY 76
Query: 240 FNNIATGDEGKYTCIAENSAGKEVMNAY-IHV---LTLPAVTI 278
+ + D Y G E + V + P + I
Sbjct: 77 ISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKI 119
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 38.1 bits (88), Expect = 0.004
Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 33/157 (21%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQLP 133
+ +T P+ EG VT+ C+ N + W D Q+
Sbjct: 3 DGGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDI 62
Query: 134 PNMIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH 186
+ L + K Y+C+ + ++ E +
Sbjct: 63 AEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFP 122
Query: 187 PNA------SQTFIVGDRADIQCVLEAGEPSP-TQTW 216
P +A + C+ P +W
Sbjct: 123 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 159
Score = 27.7 bits (61), Expect = 8.1
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEAT 299
+T +P Y+ + G+ +TL CE
Sbjct: 5 GITQSPK-YLFRKEGQNVTLSCEQN 28
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 37.3 bits (86), Expect = 0.006
Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 33/157 (21%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQLP 133
+ V PR +G + + C + + W + +
Sbjct: 2 DSGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFL 61
Query: 134 PNMIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH 186
P+ + + + ++ + D +Y C+ G+ ++ E R
Sbjct: 62 PSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTP 121
Query: 187 PNA------SQTFIVGDRADIQCVLEAGEPSP-TQTW 216
P +A + C+ P +W
Sbjct: 122 PKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSW 158
Score = 31.9 bits (72), Expect = 0.33
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 22/126 (17%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--------KYIAPFDRNLERDE---- 323
V +P ++ G L C V W K++ +ERD+
Sbjct: 5 VVQSPR-HIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLP 62
Query: 324 --------LTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
+ ++++ D+ Y C G E+ E P
Sbjct: 63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPP 122
Query: 376 GADILP 381
+
Sbjct: 123 KVSLFE 128
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 37.1 bits (86), Expect = 0.006
Identities = 14/120 (11%), Positives = 26/120 (21%), Gaps = 23/120 (19%)
Query: 61 TYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPS 119
+ S L + + +V+ +P+ + EG + C N
Sbjct: 97 QTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF 156
Query: 120 ATIKW--------------SKDNQEQLPPNMIAGE--------TLIINGITKADEGVYIC 157
W ++ +L I D Y C
Sbjct: 157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
Score = 33.6 bits (77), Expect = 0.10
Identities = 26/193 (13%), Positives = 43/193 (22%), Gaps = 54/193 (27%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDE 323
AVT +P G +TL C T + W + Y + E+ +
Sbjct: 2 AVTQSPR-NKVAVTGGKVTLSCNQTN-NHNNMYWYRQDTGHGLRLIHYSYG-AGSTEKGD 58
Query: 324 LTSRAVY----------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISP 373
+ + S Y C A +
Sbjct: 59 IPDGYKASRPSQENFSLILELATPSQTSVYFC---------------ASGDLGQTN---- 99
Query: 374 RPGADILPDGDEYYRPEPEEGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIR 433
G + + A + + P TV G+ A +
Sbjct: 100 --ERLFFGHGTKLSVLGSADDAKKDAAKKDGQ---------VRQSPQSLTVWEGETAILN 148
Query: 434 CSAIGATPISIRW 446
CS + W
Sbjct: 149 CSYENSAFDYFPW 161
Score = 33.2 bits (76), Expect = 0.12
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 39/149 (26%)
Query: 94 VQVT--PRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQLPP 134
+ VT PR + A G +VT+ C + + W + ++ P
Sbjct: 1 MAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIP 60
Query: 135 NMIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHP 187
+ +LI+ T + VY C+ + + + +
Sbjct: 61 DGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK 120
Query: 188 N-------------ASQTFIVGDRADIQC 203
S T G+ A + C
Sbjct: 121 KDAAKKDGQVRQSPQSLTVWEGETAILNC 149
Score = 32.8 bits (75), Expect = 0.15
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 19/88 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +P ++V GE L C W + I E
Sbjct: 130 VRQSPQ-SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRF 188
Query: 325 TSRAVY-------TIASVRESDAGQYKC 345
T IA + D+ Y C
Sbjct: 189 TIFFNKREKKLSLHIADSQPGDSATYFC 216
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 36.9 bits (85), Expect = 0.007
Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 24/187 (12%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW---------------SKDNQEQLPP 134
N+V+ +P+ EG T++C + P + ++W + +
Sbjct: 3 KNQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNG 62
Query: 135 NMIAG-------ETLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH- 186
A +L I +D YIC + + + + Y P I+
Sbjct: 63 RYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPD 122
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
P Q C+ + + + + V + + + +A
Sbjct: 123 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWS 182
Query: 247 DEGKYTC 253
++ + C
Sbjct: 183 NKSDFAC 189
Score = 30.0 bits (67), Expect = 1.2
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +P + + G+ TL+C T P + W K + +
Sbjct: 6 VEQSPQ-SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY 64
Query: 325 TSR-------AVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358
T+ + I + + SD+ Y C+ + T ++
Sbjct: 65 TATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLY 105
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 35.7 bits (82), Expect = 0.007
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 34/105 (32%)
Query: 93 EVQVTPRQQSAPEGSQVTIEC--KSNDPSA---TIKWSKDNQEQLPPNM----------- 136
V T R+ GSQVT+ C S++ + + W +
Sbjct: 2 VVY-TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 137 -----------IAGE------TLIINGITKADEGVYICSIQNAQG 164
G+ +++I+ + +D G + C ++N
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPD 105
Score = 35.7 bits (82), Expect = 0.007
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 30/121 (24%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMP----TVSWVK-------------------YI 312
+ + V G +TL C + +W YI
Sbjct: 1 IVVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 313 APFDRNLERDELTSRAVY-----TIASVRESDAGQYKCIGKNSAGTE--EKVITVAVEHR 365
ER + + I ++ SD G + C KN +T+ V +
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Query: 366 P 366
Sbjct: 121 V 121
Score = 32.6 bits (74), Expect = 0.082
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 27/121 (22%)
Query: 183 IRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIR----------------PDNDGKFG 226
I ++ + VG + + C + E +
Sbjct: 1 IVVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 227 PDVEVYQEL-----------GVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPA 275
+V ++E G + +N+ D G +TC +N + + +
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Query: 276 V 276
V
Sbjct: 121 V 121
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 35.3 bits (81), Expect = 0.008
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 31/139 (22%)
Query: 46 EVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPE 105
V G L C Y + V +
Sbjct: 6 AVQGLAGHPVTLPCI-------------------------YSTHLGGIVPMCWGLGECRH 40
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQNAQG 164
+ +N T+ ++++ QL N+ G +L I D G Y C ++
Sbjct: 41 SYCIRSLIWTN--GYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEI--P 96
Query: 165 NVFQD-YASIQVDKREMPR 182
F ++V +PR
Sbjct: 97 GAFHFVDYMLEVKPELVPR 115
Score = 30.3 bits (68), Expect = 0.44
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 23/109 (21%)
Query: 278 ITPSEYVSVRPGEPLTLEC--EATGRPMPTVSWVKYIAPFDR------------------ 317
+ V G P+TL C + + W
Sbjct: 1 MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN 60
Query: 318 ---NLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVE 363
L+ + TI + D G Y C+ + + V+
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 37.1 bits (86), Expect = 0.008
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 22/93 (23%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPF-------- 315
AV +V + G + +EC + T+ W +
Sbjct: 2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG 61
Query: 316 ---DRNLERDELTSRAVYTIASVRESDAGQYKC 345
D+ L + + T+ S D+ Y C
Sbjct: 62 VEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
Score = 29.0 bits (65), Expect = 3.2
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 37/156 (23%)
Query: 97 TPRQQSAPEGSQVTIECKSND------------PSATIKW--------SKDNQEQLPPNM 136
P + G+ V IEC+S D P ++ ++ + +
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDK 66
Query: 137 IAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDY--------ASIQVDKREMP 181
TL + D YICS G+ + + + P
Sbjct: 67 FLINHASLTLSTLTVTSAHPEDSSFYICS-ARTSGDFGEQFFGPGTRLTVLEDLKNVFPP 125
Query: 182 RIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTW 216
+ + + +A + C+ P +W
Sbjct: 126 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 36.8 bits (85), Expect = 0.010
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 22/93 (23%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDE 323
AV +V + G + +EC + T+ W + +
Sbjct: 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG 84
Query: 324 LTSRA----------VY-TIASVRESDAGQYKC 345
+ T+ S D+ Y C
Sbjct: 85 VEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 117
Score = 36.0 bits (83), Expect = 0.016
Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 43/188 (22%)
Query: 68 WMWLNFYSFLSLIIICLAYLSPQANEVQVT--PRQQSAPEGSQVTIECKSND-------- 117
+ + + S V+ P + G+ V IEC+S D
Sbjct: 3 FARV----HFISALHGSGGGSGGGGGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFW 58
Query: 118 ----PSATIKW--------SKDNQEQLPPNMIAGE-------TLIINGITKADEGVYICS 158
P ++ ++ + + TL + D YICS
Sbjct: 59 YRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICS 118
Query: 159 IQNAQGNVFQDYA---------SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGE 209
++ + + + P + + + +A + C+
Sbjct: 119 ARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY 178
Query: 210 PSP-TQTW 216
P +W
Sbjct: 179 PDHVELSW 186
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 34.2 bits (79), Expect = 0.022
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 21/95 (22%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECKSNDPSATIKW----------------SKDNQEQLPPN 135
++V+ +P S EG+ + C +++W S + +
Sbjct: 2 DQVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKS 61
Query: 136 MIAGE-----TLIINGITKADEGVYICSIQNAQGN 165
E TL I D G Y C+ + + G+
Sbjct: 62 AFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 33.7 bits (77), Expect = 0.025
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 27/117 (23%)
Query: 47 VTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEG 106
V G +A L C+ Y+ V + + P
Sbjct: 4 YKVEVGKNAYLPCS-------------YTL-----------PTSGTLVPMCWGKGFCPWS 39
Query: 107 SQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQNA 162
++++ + T + K ++ QL ++ G+ +LII +T D G Y C IQ
Sbjct: 40 QCTNELLRTDERNVT--YQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFP 94
Score = 29.9 bits (67), Expect = 0.56
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 24/88 (27%)
Query: 282 EYVSVRPGEPLTLECEATGRPMPT---VSWVKYIAPFDR--------------------- 317
+ V G+ L C T T + W K P+ +
Sbjct: 2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 318 NLERDELTSRAVYTIASVRESDAGQYKC 345
L+ D I +V D G Y C
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCC 89
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.0 bits (80), Expect = 0.026
Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 26/185 (14%)
Query: 95 QVT--PRQQSAPEGSQVTIECK-SNDPSATIKW---------------SKDNQEQLPPNM 136
+VT P S PEG + + C ++ ++W +EQ +
Sbjct: 2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRL 61
Query: 137 IAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH-PN 188
A TL I D Y+C+++ G + P I+ P
Sbjct: 62 NASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPA 121
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
Q C+ + + + + V + + + +A ++
Sbjct: 122 VYQLRRSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNK 181
Query: 249 GKYTC 253
+ C
Sbjct: 182 SDFAC 186
Score = 29.6 bits (66), Expect = 1.9
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
VT P+ +SV GE L L C T + + W + I R L
Sbjct: 3 VTQIPAA-LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRL 61
Query: 325 TSRAVY-------TIASVRESDAGQYKCIGKNSAG 352
+ IA+ + D+ Y C + ++G
Sbjct: 62 NASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSG 96
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 33.8 bits (78), Expect = 0.029
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVKYIAPFDRNLERDELTSRAVYT-- 331
V TP ++ GE LT+ C W + P RN E R V T
Sbjct: 3 VDQTPQR-ITKETGESLTINCVVRDSRCVLSTGYWYR-KPPGSRNEESISDGGRYVETVN 60
Query: 332 ---------IASVRESDAGQYKC 345
I + D+G Y+C
Sbjct: 61 RGSKSFSLRINDLTVKDSGTYRC 83
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 35.0 bits (80), Expect = 0.032
Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 37/231 (16%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW----------------SKDNQEQL 132
+A V + + EG+ + + CK S + + W S D Q
Sbjct: 8 EAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQG 67
Query: 133 PPNMIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRI 185
A L + +D VY C +A+G + P I+
Sbjct: 68 VNGFEAEFSKSDSSFHLRKASVHWSDSAVYFC-AVSAKGTGSKLSFGKGAKLTVSPNIQN 126
Query: 186 H-PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA 244
P Q C+ + + + + V + + + +A
Sbjct: 127 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVA 186
Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLE 295
++ + C N+ ++ P T PS S R G + +
Sbjct: 187 WSNKSDFAC--ANAFNNSII---------PEDTFFPSPESSSRGGLEVLFQ 226
Score = 31.9 bits (72), Expect = 0.36
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 20/90 (22%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLER--- 321
VT + V+V G L L C+ + P + W D ++
Sbjct: 12 VTQPDAR-VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNG 70
Query: 322 -----DELTSRAVYTIASVRESDAGQYKCI 346
+ S ASV SD+ Y C
Sbjct: 71 FEAEFSKSDSSFHLRKASVHWSDSAVYFCA 100
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 35.2 bits (80), Expect = 0.033
Identities = 13/102 (12%), Positives = 24/102 (23%), Gaps = 9/102 (8%)
Query: 274 PAVTITPSEYVSVRPGEPLTLEC-------EATGRPMPTVSWVKYIAPFDRNLERDELTS 326
P I+P V V+ T C + + W + +
Sbjct: 5 PCGYISPESPV-VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRT 63
Query: 327 RAVYTIASVRESDAGQY-KCIGKNSAGTEEKVITVAVEHRPE 367
+ T + + + IT+ PE
Sbjct: 64 ASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPE 105
Score = 31.3 bits (70), Expect = 0.53
Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 31/229 (13%)
Query: 96 VTPRQQSAPEGSQVTIECKSN--------DPSATIKWSKDNQEQLPPNMIAGETLIINGI 147
++P S T C + I W ++ +P + +
Sbjct: 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNH-FTIPKEQYTIINRTASSV 67
Query: 148 T----KADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQC 203
T + C+I G + Q+ I + P + + IV + ++C
Sbjct: 68 TFTDIASLNIQLTCNI-LTFGQLEQNVYGITIISGLPP----EKPKNLSCIVNEGKKMRC 122
Query: 204 VLEAGEPSPTQTW--IRPDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYT--CIAENSA 259
+ G + +T ++ + D + ++ + +T AEN+
Sbjct: 123 EWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 182
Query: 260 GKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
GK +T + P V P L++ + ++W
Sbjct: 183 GK---------VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTW 222
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 34.7 bits (79), Expect = 0.034
Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 27/187 (14%)
Query: 90 QANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQL 132
+ ++V+ +P S EG+ + C ++W +L
Sbjct: 2 RGDQVEQSPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRL 61
Query: 133 PPNMIAGE---TLIINGITKADEGVYICSIQNAQGN--VFQDYASIQVDKREMPRIRIH- 186
+ E TL I D G Y C+ + + N VF +QV P I+
Sbjct: 62 KSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVL----PNIQNPD 117
Query: 187 PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATG 246
P Q C+ + + + + V + + + +A
Sbjct: 118 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWS 177
Query: 247 DEGKYTC 253
++ + C
Sbjct: 178 NKSDFAC 184
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.3 bits (76), Expect = 0.036
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 280 PSEYVSVRPGEPLTLECEATG------------RPMPTVSWVKYI--------APFDRNL 319
P E V+ G +++ C R + I R
Sbjct: 7 PEE-VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRAN 65
Query: 320 ERDELTSRAVY-TIASVRESDAGQYKC-IGKNSAGTEEKV 357
+ + IA + + D+G+YKC +G NS G V
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV 105
Score = 29.1 bits (65), Expect = 1.2
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 98 PRQQSAPEGSQVTIEC----KSNDPSATIKWSKDNQEQLPPNMIAGE------------- 140
P + ++ EG+ V+I C S + W + +I+ E
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 141 ---------TLIINGITKADEGVYICSIQNAQGNVFQD 169
+ I +++ D G Y C + + D
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD 104
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 33.2 bits (76), Expect = 0.047
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 17/82 (20%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
V TPR + G +TI C ++ W + I+
Sbjct: 2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK 61
Query: 141 -----TLIINGITKADEGVYIC 157
+L I+ + D G Y C
Sbjct: 62 GSKSFSLRISDLRVEDSGTYKC 83
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 34.2 bits (78), Expect = 0.048
Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 23/186 (12%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW--------------SKDNQEQLPPN 135
+VQ +P S PEG ++ C S+ W + ++
Sbjct: 2 QQKVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGR 61
Query: 136 MIAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPN 188
A +L I +D +Y C+ + P I+
Sbjct: 62 FTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDP 121
Query: 189 ASQTFIVGDRADIQ-CVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247
A +D C+ + + + + V + + + +A +
Sbjct: 122 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN 181
Query: 248 EGKYTC 253
+ + C
Sbjct: 182 KSDFAC 187
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 34.4 bits (79), Expect = 0.050
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 20/89 (22%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV--------KYIAPFDRNLERDE---- 323
+ P+ + G PL+LEC G P + W + + +
Sbjct: 4 IHQWPA-TLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQ 62
Query: 324 ------LTSRAVY-TIASVRESDAGQYKC 345
R + + SD+G Y C
Sbjct: 63 NLSASRPQDRQFILSSKKLLLSDSGFYLC 91
Score = 29.8 bits (67), Expect = 1.7
Identities = 21/168 (12%), Positives = 43/168 (25%), Gaps = 50/168 (29%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW------------------------- 124
+ + P P GS +++EC + + W
Sbjct: 1 SQTIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEV 60
Query: 125 ------SKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQDYA------- 171
S+ Q L + +D G Y+C+ + G
Sbjct: 61 PQNLSASRPQDRQF--------ILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWL 112
Query: 172 --SIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP-TQTW 216
++K P + + + +A + C+ P +W
Sbjct: 113 TVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSW 160
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.052
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 25/107 (23%)
Query: 94 VQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMIAGE---------- 140
Q + + G +T+ C+ + W K+ + ++
Sbjct: 13 AQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSR 72
Query: 141 ------------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
T+ + + + D G Y C I N +
Sbjct: 73 FTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 119
Score = 33.0 bits (75), Expect = 0.066
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 21/110 (19%)
Query: 275 AVTITPSEYVSVRPGEPLTLEC--EATGRPMPTVSWVKYIAPF----------------- 315
+ + ++ + G+ LT+ C TG W K +
Sbjct: 11 SQAQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWT 70
Query: 316 DRNLERDELTSRAVY-TIASVRESDAGQYKC-IGKNSAGTEEKVITVAVE 363
R D+ + T+ +RE D+G Y C I + S + K + +
Sbjct: 71 SRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.7 bits (75), Expect = 0.054
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 94 VQVTPRQQSAPEGSQVTIEC---KSNDPSATIKWSKDNQEQLPPNMIAGE---------- 140
V TPR + G +TI C ++ + W + + I+
Sbjct: 3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSG 62
Query: 141 ----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVD 176
+L IN +T D G Y C + A G S +
Sbjct: 63 SKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYA 102
Score = 30.8 bits (70), Expect = 0.28
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 27/89 (30%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK----------------YIAPFDR 317
V TP V+ GE LT+ C W + Y+ +
Sbjct: 3 VDQTPRS-VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS 61
Query: 318 NLERDELTSRAVY-TIASVRESDAGQYKC 345
S++ I + D G Y+C
Sbjct: 62 G-------SKSFSLRINDLTVEDGGTYRC 83
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 32.7 bits (75), Expect = 0.054
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 17/83 (20%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLPPNMIAGE--------- 140
V TPR + G +TI C + + W + I+
Sbjct: 2 RVDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDE 61
Query: 141 -----TLIINGITKADEGVYICS 158
+L I + D G Y C
Sbjct: 62 GSNSASLTIRDLRVEDSGTYKCK 84
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 34.2 bits (78), Expect = 0.072
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 33/153 (21%)
Query: 97 TPRQQSAPEGSQVTIECKSNDPSATIKW-----------------SKDNQEQLPPNMIAG 139
+PR + A G +VT+ C+ + + W + ++ P+
Sbjct: 5 SPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA 64
Query: 140 E-------TLIINGITKADEGVYICSIQNAQGNVFQDY--ASIQVDKREMPRIRIHPNA- 189
+LI+ T + VY C+ +G+ + + ++ E R P
Sbjct: 65 SRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS 124
Query: 190 -----SQTFIVGDRADIQCVLEAGEPSP-TQTW 216
+A + C+ P +W
Sbjct: 125 LFEPSKAEIANKQKATLVCLARGFFPDHVELSW 157
Score = 32.6 bits (74), Expect = 0.21
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
AVT +P G +TL C+ T + W +
Sbjct: 1 AVTQSPR-NKVAVTGGKVTLSCQQTNN-HNNMYWYR 34
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.5 bits (74), Expect = 0.073
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 282 EYVSVRPGEPLTLECEAT-GRPMPTVSWVK----YIAPFDRNLERDELTSR--------- 327
++ G +TL+ P ++W+ I ++ N + S
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE 70
Query: 328 --AVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAV 362
I++VR+ D G Y + E IT+ V
Sbjct: 71 NNGALHISNVRKEDKGTYYMRV--LRETENELKITLEV 106
Score = 31.7 bits (72), Expect = 0.14
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 21/88 (23%)
Query: 102 SAPEGSQVTIECKSNDPSA--TIKWSKDNQEQL-------PPNMIAGE------------ 140
+A GS VT++ + I W +++ + E
Sbjct: 14 NAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNG 73
Query: 141 TLIINGITKADEGVYICSIQNAQGNVFQ 168
L I+ + K D+G Y + N +
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELK 101
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 33.8 bits (77), Expect = 0.074
Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 40/190 (21%)
Query: 95 QVT--PRQQSAPEGSQVTIECKSNDPSATIKW---------------SKDNQEQLPPNMI 137
+ P+ S EG +T+ C S+ ++++W + + +
Sbjct: 3 LLEQSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLT 62
Query: 138 AGE-------TLIINGITKADEGVYICSIQNA-------QGNVFQDYASIQVDKREMPRI 183
+L I D G+Y+C+ + +G +IQ
Sbjct: 63 FQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPD------ 116
Query: 184 RIHPNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNI 243
P Q C+ + + + + V + + + +
Sbjct: 117 ---PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAV 173
Query: 244 ATGDEGKYTC 253
A ++ + C
Sbjct: 174 AWSNKSDFAC 183
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 32.6 bits (74), Expect = 0.080
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 27/93 (29%)
Query: 97 TPRQQSAPEGSQVTIECK--SNDPSATIKWSKD------------------------NQE 130
+ + G VT+ C + T W + ++
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 131 QLPPNMIAGE-TLIINGITKADEGVYICSIQNA 162
L ++ G+ +L I ++D G+Y C ++
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIP 95
Score = 32.2 bits (73), Expect = 0.11
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 284 VSVRPGEPLTLECEATG-RPMPTVSWVKYIAPFDR---------------------NLER 321
V G P+TL C + R + T W + P NL+
Sbjct: 7 VKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG 66
Query: 322 DELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPR 374
TI + ESD+G Y C + ++ +T +++ +P + PR
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP---ELVPR 116
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 33.4 bits (76), Expect = 0.084
Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 30/185 (16%)
Query: 95 QVT--PRQQSAPEGSQVTIECK-SNDPSATIKW---------------SKDNQEQLPPNM 136
VT Q + E + I C S T+ W + N +
Sbjct: 2 SVTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGF 61
Query: 137 IAGE-------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIH-PN 188
A L + + D VY C+ + F +QV +P I+ P
Sbjct: 62 EATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQV----VPNIQNPDPA 117
Query: 189 ASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGDE 248
Q C+ + + + + V + + + +A ++
Sbjct: 118 VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNK 177
Query: 249 GKYTC 253
+ C
Sbjct: 178 SDFAC 182
Score = 29.6 bits (66), Expect = 1.7
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 25/129 (19%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
VT + V++ + L + C + PT+ W + +
Sbjct: 3 VTQMQGQ-VTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGF 61
Query: 325 TSRAVY-------TIASVRESDAGQYKCIGKNS------AGTEEKVITVAVEHRPEYGPI 371
+ SV+E D+ Y C + GT+ +V+ P +
Sbjct: 62 EATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQL 121
Query: 372 SPRPGADIL 380
+D
Sbjct: 122 RDSKSSDKS 130
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 33.1 bits (75), Expect = 0.12
Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 41/221 (18%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKW---------------SKDNQEQLPPN 135
+ + + P+ S EG T+ C ++W + +E+
Sbjct: 1 SQQGEEDPQALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGR 60
Query: 136 MIAGE-------TLIINGITKADEGVYIC---SIQNAQGNVFQDYASIQVDKREMPRIRI 185
+ +L+I AD Y C + +F ++V + I+
Sbjct: 61 LRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKV----LANIQN 116
Query: 186 H-PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIA 244
P Q C+ + + + + V + + + +A
Sbjct: 117 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVA 176
Query: 245 TGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS 285
++ + C N+ +P T PS S
Sbjct: 177 WSNKSDFAC--ANAFNNS---------IIPEDTFFPSPESS 206
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 31.8 bits (72), Expect = 0.12
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 28/118 (23%)
Query: 46 EVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPE 105
+ + G L C+ YLS + + + S P
Sbjct: 5 TIIGFLGQPVTLPCH-------------------------YLSWSQSRNSMCWGKGSCPN 39
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQNA 162
+++ K + L + GE +L I+ + D GVY C I+
Sbjct: 40 SKCNAELLRTDGTRII--SRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVP 95
Score = 30.7 bits (69), Expect = 0.31
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 23/89 (25%)
Query: 280 PSEYVSVRPGEPLTLEC--EATGRPMPTVSWVKYIAPFDR-------------------- 317
+ + G+P+TL C + + ++ W K P +
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 318 -NLERDELTSRAVYTIASVRESDAGQYKC 345
L TI++ D+G Y C
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 33.7 bits (76), Expect = 0.13
Identities = 27/216 (12%), Positives = 51/216 (23%), Gaps = 39/216 (18%)
Query: 268 IHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVKYIAPFDRNLERDELTSR 327
I + + P + V + G +T C + + + + + E +
Sbjct: 193 ISWIPDSQTKVFPQDKV-ILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIK-- 249
Query: 328 AVYTIASVRESDAGQYKCIGKNSAGTEEKVITV--------AVEHRPEYGPISPRPGADI 379
+ I+ S N GT H + S PG
Sbjct: 250 -IRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVT 308
Query: 380 LPDGDE------YYRPEPEEGEYVYAV-GSNASISCSVEPP------RITLR-------- 418
G + A +N S + TL
Sbjct: 309 ALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS 368
Query: 419 ------PVRQTVKPGDIANIRCSAIGATPISIRWQP 448
+ + V P + + I +T + + W
Sbjct: 369 QSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHL 404
Score = 33.7 bits (76), Expect = 0.14
Identities = 35/270 (12%), Positives = 66/270 (24%), Gaps = 39/270 (14%)
Query: 54 DAELKCNTYYAPGRWMWLNF----YSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQV 109
D L+C ++ R N S ++ +V P+ + GS +
Sbjct: 157 DMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDI 216
Query: 110 TIECKSN-DPSATIKWSKDNQE-QLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVF 167
T C S + + + L + + I I+ +
Sbjct: 217 TFCCVSQEKVLSALIGHTNCPLIHLDGENV---AIKIRNISVSASSGTNVVFTTEDN--- 270
Query: 168 QDYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSP---------TQTWIR 218
+ P D +I C G + T
Sbjct: 271 --IFGTVIFAGYPP----DTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESF 324
Query: 219 PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTI 278
+ E L F + + +T A N G+ + +
Sbjct: 325 SGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST----------ILV 374
Query: 279 TPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
+E V P P + + + +SW
Sbjct: 375 NITEK--VYPHTPTSFKVKDINSTAVKLSW 402
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 33.3 bits (76), Expect = 0.13
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK 310
+ P + V G+ + L C P +SW +
Sbjct: 4 LEQNPR-WRLVPRGQAVNLRCILKNSQYPWMSWYQ 37
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 33.8 bits (77), Expect = 0.14
Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 20/188 (10%)
Query: 159 IQNAQGNVFQDYASI-QVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPSPTQTW- 216
++ A N ++ + T +G+ ++C +P W
Sbjct: 343 VRTAVINAASGRQTVDAALAAAQTNAAAASAQNITARIGEPLVLKCKGAPKKPPQRLEWK 402
Query: 217 --------IRPDNDGKFGPDVEVYQEL--GVLRFNNIATGDEGKYTCIAENSAGKEVMNA 266
+ + GP V + L G L + DEG + C A N GKE +
Sbjct: 403 LNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSN 462
Query: 267 YI----HVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPTVSWV---KYIAPFDRNL 319
Y + P + + SE + P + T E P T+SW K + P ++ +
Sbjct: 463 YRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEG-SYPAGTLSWHLDGKPLVPNEKGV 521
Query: 320 ERDELTSR 327
E T R
Sbjct: 522 SVKEQTRR 529
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 33.4 bits (76), Expect = 0.14
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 20/138 (14%)
Query: 96 VTPRQQSAPEGSQVTIECK----SNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKAD 151
P + GS+ + C + T W+ + + + G
Sbjct: 252 HRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDL---CGCYSVS 308
Query: 152 EGVYICSIQNAQGNVF------------QDYASIQVDKREMPRIRIHPNASQTFIVGDRA 199
+ C+ G F + P + + P S+ + +
Sbjct: 309 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELV 368
Query: 200 DIQCVLEAGEPSPTQ-TW 216
+ C+ P W
Sbjct: 369 TLTCLARGFSPKDVLVRW 386
Score = 33.0 bits (75), Expect = 0.22
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 19/142 (13%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATG---RPMPTVSWVKYIAPFDRNLERDELTSRAVY 330
P +++ + G L C TG T +W + Y
Sbjct: 247 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLC-GCY 305
Query: 331 TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYY--R 388
+++SV A + K T + P++ E +
Sbjct: 306 SVSSVLPGCAEPWN---------HGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLP 356
Query: 389 PEPEEGEYVYAVGSNASISCSV 410
P EE A+ +++C
Sbjct: 357 PPSEE----LALNELVTLTCLA 374
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.0 bits (70), Expect = 0.21
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 26/86 (30%)
Query: 102 SAPEGSQVTIECKSNDPSA------TIKWSKDNQEQLPPNMIAGE--------------- 140
A + C+ + + W L + E
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 141 -----TLIINGITKADEGVYICSIQN 161
TL ++ + D+G+Y C I +
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHH 90
Score = 28.3 bits (63), Expect = 1.8
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 299 TGRPMPTVSWVKYIAPFDR-NLERDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEK 356
G+ KY R + + D T R + +++ D G Y+C I +
Sbjct: 46 LGKEKFDSVHSKY---MGRTSFDSDSWTLR----LHNLQIKDKGLYQCIIHHKKPTGMIR 98
Query: 357 VITVAVE 363
+ + E
Sbjct: 99 IHQMNSE 105
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 33.0 bits (75), Expect = 0.23
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 31/132 (23%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN---- 318
V + S RPG + + C+A+G RP + W+ YI P
Sbjct: 1 VKLQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYN 60
Query: 319 --------LERDELTSRAVYTIASVRESDAGQYKCIGKNS-----AGTEEKVITVAVEHR 365
L RD ++ A ++S+ D+ Y C+ + GT V + A
Sbjct: 61 QRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTV-SSAKTTP 119
Query: 366 PEYGPISPRPGA 377
P P++P A
Sbjct: 120 PSVYPLAPGSAA 131
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.1 bits (70), Expect = 0.24
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 20/90 (22%)
Query: 85 AYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE---- 140
+ S A + +G + W + +E L N G+
Sbjct: 3 SGSSGTA-RLVAGLEDVQVYDGEDAVFSLDLSTI-IQGTWFLNGEE-LKSNEPEGQVEPG 59
Query: 141 -------------TLIINGITKADEGVYIC 157
LI++ + D G +
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVG 89
Score = 30.7 bits (69), Expect = 0.27
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 20/112 (17%)
Query: 274 PAVTIT-PSEYVSVRPGEPLTLECEATGRPMPTVSWVK---YIAPFDRNLERDELTSRAV 329
+ E V V GE + + +W + + + + R
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRYR 64
Query: 330 Y---------TIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPIS 372
+ +V+ D+G S + + ++ GP S
Sbjct: 65 IEQKGLQHRLILHAVKHQDSGALVGF---SCPGVQDSAALTIQESS--GPSS 111
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 32.3 bits (74), Expect = 0.24
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK 310
+ + V V G P TL C G + ++W +
Sbjct: 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYR 39
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.8 bits (70), Expect = 0.25
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 25/103 (24%)
Query: 94 VQVTPRQQSAPEGSQVTIECK---SNDPSATIKWSKDNQEQLP---PNMIAGE------- 140
V TPR + G +TI+C + ++ W +
Sbjct: 3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYR----TQLGSTNEKTISIGGRYDET 58
Query: 141 --------TLIINGITKADEGVYICSIQNAQGNVFQDYASIQV 175
+L I+ + D G Y C + V
Sbjct: 59 VDKGSKSFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAV 101
Score = 29.2 bits (66), Expect = 1.1
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK---------YIAPFDRNLERDEL 324
V TP ++ GE LT++C +W + I+ R E +
Sbjct: 3 VDQTPRT-ITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDK 61
Query: 325 TSRAVY-TIASVRESDAGQYKC 345
S++ I+ +R D+G YKC
Sbjct: 62 GSKSFSLRISDLRVEDSGTYKC 83
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 32.6 bits (73), Expect = 0.30
Identities = 38/269 (14%), Positives = 74/269 (27%), Gaps = 35/269 (13%)
Query: 53 GDAELKCNTYYAPGRWMW----LNFYSFLSLIIICLAYLSPQANEVQVTPRQQSAPEGSQ 108
D L+C T+ RW + Y S + E V P+ + GS
Sbjct: 161 SDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSN 220
Query: 109 VTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGVYICSIQNAQGNVFQ 168
+TI C S + + + + G+T+ I+ + +I +
Sbjct: 221 MTICCMSPTKVLSGQIGNTLRPLIHLY---GQTVAIHILNIPVSENSGTNIIFITDDDVY 277
Query: 169 DYASIQVDKREMPRIRIHPNASQTFIVGDRADIQCVLEAGEPS------PTQTWIRPDND 222
++P+ + D +I C G + T+ +
Sbjct: 278 GTVVFAGYPPDVPQK-------LSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESIS 330
Query: 223 GKFGPDVEVYQELGVLRFNNIATGDEGKYTCI---AENSAGKEVMNAYIHVLTLPAVTIT 279
GK + + + N G+ +
Sbjct: 331 GKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQ------------AQSAVV 378
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPTVSW 308
+ V P +P +L+ + + T SW
Sbjct: 379 INVTERVAPHDPTSLKVKDINSTVVTFSW 407
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.31
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 25/145 (17%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVKYIAPFDRNLERDEL-----T 325
P +++ + G L C TG T +W + +
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS 63
Query: 326 SRAVYTIASVRESDAGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDE 385
+V + + + C T++ RP +LP
Sbjct: 64 VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNT------FRPEVHLLP---- 113
Query: 386 YYRPEPEEGEYVYAVGSNASISCSV 410
P EE A+ +++C
Sbjct: 114 ---PPSEE----LALNELVTLTCLA 131
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.0 bits (67), Expect = 0.33
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 106 GSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKA-DEGVYICSIQNAQG 164
G+ V + C D +KW K+ QE + L++ ++ D G Y+C +
Sbjct: 14 GTSVELTC-PLDSDENLKWEKNGQEL---PQKHDKHLVLQDFSEVEDSGYYVCYTPASNK 69
Query: 165 NVF 167
N +
Sbjct: 70 NTY 72
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 30.7 bits (70), Expect = 0.35
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 280 PSEYVSVRPGEPLTLECEATGR-PMPTVSWVK 310
S +V G + L C P + W +
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYR 37
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold,
structural genomics, protein structure initiative, PSI;
NMR {Escherichia coli} SCOP: d.58.54.1
Length = 109
Score = 30.5 bits (69), Expect = 0.39
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 343 YKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
YK +G+ ++V+ V H P + +P
Sbjct: 39 YKVMGQALPELVDQVVEVVQRHAPGDYTPTVKP 71
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.1 bits (68), Expect = 0.46
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEAT------------GRPMPTVSWVKYIAPFDRN--- 318
VT P E VS + LT++C T G P + + ++
Sbjct: 3 DPVT-GPEE-VSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKK 60
Query: 319 ----LERDELTSRAVYTIASVRESDAGQYKC-IGKNSAGTEEKVITVAV 362
+ ++ T+ +R SDAG Y C I K KV TV +
Sbjct: 61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKV-TVNI 108
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 0.59
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 36/118 (30%)
Query: 93 EVQVTPRQQSAPEGSQVTIECK--------------------------------SNDPSA 120
+ + + EG V + C +N+P+
Sbjct: 9 SLTM-QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAW 67
Query: 121 TIKWSKDNQEQLPPNMIAGE-TLIINGITKADEGVYICSIQ--NAQGNVFQDYASIQV 175
++ ++ L + TL I +D G Y ++ N + N D S+ V
Sbjct: 68 AVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.7 bits (69), Expect = 0.64
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 19/87 (21%)
Query: 277 TITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDELT 325
I ++ G + + C + W + Y D E+ +
Sbjct: 2 NIDQPTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVL-DGLEEKGRFS 60
Query: 326 SR-------AVYTIASVRESDAGQYKC 345
S + + ++ D+ Y C
Sbjct: 61 SFLSRSKGYSYLLLKELQMKDSASYLC 87
Score = 29.5 bits (66), Expect = 2.0
Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 31/186 (16%)
Query: 95 QVT-PRQQSAPEGSQVTIECK-SNDPSATIKW-------------SKDNQEQLPPNMIAG 139
+ P + +A EG+ V I C + W +
Sbjct: 2 NIDQPTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSS 61
Query: 140 E--------TLIINGITKADEGVYICSIQNAQGN---VFQDYASIQVDKREMPRIRIH-P 187
L++ + D Y+C++Q + G+ F S+ V P I+ P
Sbjct: 62 FLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIV----HPYIQNPDP 117
Query: 188 NASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFNNIATGD 247
Q C+ + + + + V + + + +A +
Sbjct: 118 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN 177
Query: 248 EGKYTC 253
+ + C
Sbjct: 178 KSDFAC 183
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 31.1 bits (71), Expect = 0.68
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 25/91 (27%)
Query: 280 PSEYVSVRPGEPLTLECEATGRPMPT--VSWVK-----------YIAPFDRNLE------ 320
P + + LEC +G + V W + I+ +
Sbjct: 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPS 66
Query: 321 ------RDELTSRAVYTIASVRESDAGQYKC 345
R TS + TI +V + D Y C
Sbjct: 67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYC 97
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 29.3 bits (65), Expect = 0.81
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 105 EGSQVTIECKSNDPSATIKWSKDNQEQLPPN-----MIAGETLIINGITKADEGVYICSI 159
EG ++ I C+ P+ T+ K + L P+ + + II+ T + G+ C
Sbjct: 19 EGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEA 78
Query: 160 QNAQGNVFQDY 170
G++++
Sbjct: 79 T-VNGHLYKTN 88
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 29.6 bits (67), Expect = 0.85
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 24/89 (26%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK--SNDPSATIKWSKDNQE-----------QLPPNMI 137
E+QV + S G T+ C S P I W + P
Sbjct: 3 ELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTT 62
Query: 138 AGE---------TLIINGITKADEGVYIC 157
E ++ I+ IT AD G Y C
Sbjct: 63 VSELTKRNNLDFSISISNITPADAGTYYC 91
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.5 bits (66), Expect = 0.93
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 21/105 (20%)
Query: 279 TPSEYVSVRPGEPLTLECEAT-GRPMPTVSW-----------------VKYIAPFDRNLE 320
+ V+ GE +T R + ++W E
Sbjct: 4 SEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYE 63
Query: 321 RDELTSR-AVYTIASVRESDAGQYKC--IGKNSAGTEEKVITVAV 362
R I+ +R DAG YK + T K + +
Sbjct: 64 RIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 28.7 bits (64), Expect = 1.6
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 141 TLIINGITKADEGVYICSI--QNAQGNVFQDYASIQVDKR 178
L+I+ + D G Y I Q + Y ++Q+ +R
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRY-NLQIYRR 111
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 30.2 bits (68), Expect = 0.96
Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 19/96 (19%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +P ++V GE L C W I P E
Sbjct: 3 VRQSPQS-LTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRF 61
Query: 325 TSRAVY-------TIASVRESDAGQYKCIGKNSAGT 353
T IA + D+ Y C ++
Sbjct: 62 TIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF 97
Score = 27.9 bits (62), Expect = 5.7
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 95 QVT--PRQQSAPEGSQVTIECK-SNDPSATIKW 124
QV P+ + EG + C + W
Sbjct: 2 QVRQSPQSLTVWEGETAILNCSYEDSTFDYFPW 34
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 30.4 bits (69), Expect = 0.98
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 88 SPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE------- 140
N + +P SA G +VTI C ++ + + W + P I
Sbjct: 159 GGSENVLTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTSNLASGV 218
Query: 141 -------------TLIINGITKADEGVYICSIQNAQGNVF 167
+L I+ + D Y C +++ F
Sbjct: 219 PARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTF 258
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 30.4 bits (69), Expect = 1.3
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEPEEG 394
G C GK A K I V + R + + I D P+ +
Sbjct: 432 FGPRGCAGKYIAMVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDLSLHPDETKN 486
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 30.2 bits (68), Expect = 1.3
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 419 PVRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGE 463
+ + ++ +A T IS+ W G + + +
Sbjct: 190 TMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPS 234
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 1.4
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECE-ATGRPMPTVSWVKYIAPF----------------- 315
P +T P+ V+ LT++C +G W +
Sbjct: 4 PQIT-GPTT-VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKR 61
Query: 316 DRNLERDELTSRAVY-TIASVRESDAGQYKC-IGKNSAGTEEKVITVAVEHRP 366
DR +D +R T+ + ++DA Y C I K V V ++ P
Sbjct: 62 DRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTV-QVTIDPAP 113
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 29.6 bits (66), Expect = 1.7
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 22/94 (23%)
Query: 94 VQVT--PRQQSAPEGSQVTIECKSNDPSATIKW---------------SKDNQEQ--LPP 134
+ V P S EG+ + C + +++W ++ +E L
Sbjct: 2 MPVEQNPPALSLYEGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKS 61
Query: 135 NMIAGE---TLIINGITKADEGVYICSIQNAQGN 165
+ E TL I D G Y C+ ++
Sbjct: 62 TFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSG 95
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.3 bits (65), Expect = 2.1
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 25/129 (19%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSWVK-----------YIAPFDRNLERDEL 324
V +P + VR GE L+C + P + W K +
Sbjct: 4 VEQSPQ-SLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRY 62
Query: 325 TS-------RAVYTIASVRESDAGQYKCIGKNS------AGTEEKVITVAVEHRPEYGPI 371
++ + I + D Y C+ + +GT+ VI P +
Sbjct: 63 SATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQL 122
Query: 372 SPRPGADIL 380
D
Sbjct: 123 KDPRSQDST 131
Score = 28.5 bits (63), Expect = 3.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECK-SNDPSATIKW 124
+ QV P+ +G ++C S P ++W
Sbjct: 1 KTQVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRW 35
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.3 bits (63), Expect = 2.1
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 23/95 (24%)
Query: 98 PRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGE--------------- 140
R + P G ++++C + + W + Q L ++ +
Sbjct: 3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDS 62
Query: 141 ------TLIINGITKADEGVYICSIQNAQGNVFQD 169
T+ + +T+ D G Y C + F D
Sbjct: 63 PANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHD 97
Score = 27.5 bits (61), Expect = 3.4
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 19/84 (22%)
Query: 280 PSEYVSVRPGEPLTLECE-ATGRPMPTVSWVK----------------YIAPFDRNLERD 322
V+ G L+++C W + R RD
Sbjct: 3 ART-VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD 61
Query: 323 ELTSRAVY-TIASVRESDAGQYKC 345
+ + T+ ++ E DAG Y C
Sbjct: 62 SPANLSFTVTLENLTEEDAGTYWC 85
Score = 26.7 bits (59), Expect = 6.6
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 21/104 (20%)
Query: 195 VGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGV----------------- 237
VG +QC E + + W RP VE G
Sbjct: 10 VGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFT 69
Query: 238 LRFNNIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPS 281
+ N+ D G Y C + ++ + + V V++ P+
Sbjct: 70 VTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV----EVSVFPA 109
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 28.8 bits (65), Expect = 2.2
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-VSWV 309
I + V+ + CE T + W+
Sbjct: 3 ALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWL 37
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 28.4 bits (63), Expect = 2.3
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 32/127 (25%)
Query: 35 EVTQFVSAENHEVTVYEGGDAELKCNTYYAPGRWMWLNFYSFLSLIIICLAYLSPQANEV 94
+VTQ V G A C S +EV
Sbjct: 2 QVTQ-----PSVVLASSHGVASFPCEYSP------------------------SHNTDEV 32
Query: 95 QVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGETLIINGITKADEGV 154
+VT +Q+ + ++V + + + + L I G+ D G+
Sbjct: 33 RVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRV---NLTIQGLRAVDTGL 89
Query: 155 YICSIQN 161
Y+C ++
Sbjct: 90 YLCKVEL 96
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 29.2 bits (66), Expect = 2.3
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + L C A+G RP + W+ I P + + +
Sbjct: 13 VKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATIT 72
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D ++ A ++S+ D Y C
Sbjct: 73 ADTSSNTAYLHLSSLTSGDTAVYYC 97
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 29.5 bits (67), Expect = 2.3
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 26/120 (21%)
Query: 251 YTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVSVRPGEPLTLECEATGRPMPT--VSW 308
YTC A + + + + + S V+PG L L C A+G +SW
Sbjct: 196 YTCEATHKTSTSPIVKSFNRNECEVM-LVESGGGLVKPGGSLKLSCTASGFIFNRCAMSW 254
Query: 309 VK-----------YIAPFDRN------------LERDELTSRAVYTIASVRESDAGQYKC 345
V+ I+ + RD + ++S+R +D Y C
Sbjct: 255 VRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYC 314
Score = 28.3 bits (64), Expect = 5.8
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 284 VSVRPGEPLTLECEATG----RPMPTVSWVK 310
++V G+ T+ C A+ + W +
Sbjct: 11 LAVSLGQRATISCRASESVDSSGHSFMHWYQ 41
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.4 bits (66), Expect = 2.4
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 25/95 (26%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK-----------YIAPFDRN---- 318
V + S V+PG + + C+A+G + WVK Y +P + +
Sbjct: 2 VQLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYN 61
Query: 319 --------LERDELTSRAVYTIASVRESDAGQYKC 345
L D S A ++S+R D Y C
Sbjct: 62 ERFKGKATLTADTSASTAYVELSSLRSEDTAVYFC 96
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 29.3 bits (66), Expect = 2.4
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT-----VSWV 309
+T TP + V G+ ++ C ++ + + + W
Sbjct: 18 MTQTPLS-LPVSLGDQASISCRSSQSLVHSNGNTYLRWY 55
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 29.6 bits (67), Expect = 2.4
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRPGADILPDGDEYYRPEP 391
AG+ KC + + + +IT A+ + G++ RP
Sbjct: 405 AGKRKCPSDHFSMAQLTLITAALATKYR---FEQVAGSNDAVRVGITLRPHD 453
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.9 bits (62), Expect = 2.5
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 22/102 (21%)
Query: 98 PRQQSAPEGSQVTIEC--KSNDPSATIKWSKDNQEQLPPNMIAGE--------------- 140
P AP GS + ++C + D A W + E P + +
Sbjct: 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 141 -----TLIINGITKADEGVYICSIQNAQGNVFQDYASIQVDK 177
+ + + + D G Y C + A+G S+ +
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILP 105
Score = 26.4 bits (58), Expect = 8.8
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 281 SEYVSVRPGEPLTLECE-ATGRPMPTVSWVKYI---------------APFDRNLERDEL 324
E + G + ++C W +++ AP R +L
Sbjct: 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 325 TSRAVY-TIASVRESDAGQYKC-IGKNSAGTEEKVITVAV 362
+ + +++E DAG+Y C + +++ +
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 29.2 bits (65), Expect = 2.6
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 274 PAVTITPSEYVSVRPGEPLTLECEATGRPMP---TVSWVK 310
+ P + L C P +V+W +
Sbjct: 13 IQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTR 52
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 29.4 bits (66), Expect = 2.6
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 420 VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEYNGELRLGPHKH 471
RQ I S I A ++ W + + + ++ E G +
Sbjct: 180 GRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPRE 231
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 28.3 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSN 116
E VT PR + A G +VT+ CK
Sbjct: 5 EAAVTQSPRNKVAVTGEKVTLSCKQT 30
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 28.9 bits (64), Expect = 2.9
Identities = 36/224 (16%), Positives = 66/224 (29%), Gaps = 44/224 (19%)
Query: 91 ANEVQVTPRQQSAPEGSQVTIECK--SNDPSATIKW----------------SKDNQEQL 132
A +V + S E VT++C + D + + W S D Q ++
Sbjct: 3 AQKVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEI 62
Query: 133 PP----NMIAGETLIINGITKA---DEGVYICSIQNAQGN---VFQDYASIQVDKREMPR 182
N + IT + D VY C++ +F +QV P
Sbjct: 63 SGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVF----PN 118
Query: 183 IRIH-PNASQTFIVGDRADIQCVLEAGEPSPTQTWIRPDNDGKFGPDVEVYQELGVLRFN 241
I+ P Q C+ + + + + V + + +
Sbjct: 119 IQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNS 178
Query: 242 NIATGDEGKYTCIAENSAGKEVMNAYIHVLTLPAVTITPSEYVS 285
+A ++ + C N+ +P T PS S
Sbjct: 179 AVAWSNKSDFAC--ANAFNNS---------IIPEDTFFPSPESS 211
Score = 28.5 bits (63), Expect = 4.0
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 21/99 (21%)
Query: 276 VTITPSEYVSVRPGEPLTLECE-ATGRPMPTVSWVK-----------YIAPFDRNLER-- 321
VT +E +SV E +TL+C T + W K FD E
Sbjct: 6 VTQAQTE-ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISG 64
Query: 322 ------DELTSRAVYTIASVRESDAGQYKCIGKNSAGTE 354
+ TS +TI + + D+ Y C T+
Sbjct: 65 RYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTD 103
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 29.2 bits (66), Expect = 3.1
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + + C+A+G +P + W+ YI P++ L
Sbjct: 34 VKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLT 93
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 94 SDKSSSTAYMELSSLTSEDSAVYYC 118
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 28.9 bits (64), Expect = 3.1
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 393 EGEYVYAVGSNASISCSVEPPRITLRPVRQTVKPGDIANIRCSAIGATPISIRWQPLQGY 452
E + S S V +T + P + + I A+ + W
Sbjct: 81 HQEVTRFDFTTTSTSTPVTSNTVTGETTPFS--PLVATSESVTEITASSFVVSWVSASDT 138
Query: 453 FPSHVVEY 460
VEY
Sbjct: 139 VSGFRVEY 146
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 29.1 bits (64), Expect = 3.2
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 196 GDRADIQCVLEAGEPSPTQTWIR----PDNDGKFGPDVEVYQELGVLRFNNIATGDEGKY 251
G A QC + + W++ D K + + N D GKY
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 252 TCIAENSAGKEVMN 265
C+ G + N
Sbjct: 239 RCMIRTEGGVGISN 252
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 28.8 bits (65), Expect = 3.3
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMP-TVSWVK-----------YIAPFDRNLERDE 323
+ +T S S G L C + T+ W + + + D
Sbjct: 2 LVLTQSSSASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDG 61
Query: 324 LTSR---------AVYTIASVRESDAGQYKC 345
+ R +I++++ D Y C
Sbjct: 62 IPDRFSGSSSGADRYLSISNIQPEDEAIYIC 92
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 27.6 bits (62), Expect = 3.4
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 426 PGDIANIRCSAIGATPISIRWQP-------LQGYFPSHVVEY 460
PG + N++ + T I I W+P +QGY +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGPVQGY----RLFC 45
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC,
immune system; HET: NAG; 2.40A {Mus musculus} SCOP:
b.1.1.1 PDB: 3b9k_B*
Length = 115
Score = 27.5 bits (62), Expect = 3.5
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 281 SEYVSVRPGEPLTLECEATG 300
+ V+ + CE
Sbjct: 5 PSSLLVQTNHTAKMSCEVKS 24
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 28.8 bits (65), Expect = 3.7
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWV 309
+ +T VS PG+ +T+ C + + + VSW
Sbjct: 4 IVLTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWY 39
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 24/86 (27%)
Query: 284 VSVRPGEPLTLECEATGRPMPT--VSWVK-----------YIAPFDRNLERDELTSRA-- 328
+S E + C+ + + W + Y+ ++ D+ +
Sbjct: 11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEA 70
Query: 329 --------VY-TIASVRESDAGQYKC 345
TI S+ E D Y C
Sbjct: 71 SKNPSASTSILTIYSLEEEDEAIYYC 96
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 28.7 bits (64), Expect = 4.4
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK 310
V + S V+PG L L C +G + WV+
Sbjct: 2 VKLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVR 38
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 27.3 bits (61), Expect = 4.4
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 93 EVQVTPRQQSAPEGSQVTIECKSND 117
++ PR + P G V + C +
Sbjct: 3 LLEQNPRWRLVPRGQAVNLRCILKN 27
Score = 26.9 bits (60), Expect = 5.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 275 AVTITPSEYVSVRPGEPLTLECEATGRPMPTVSW 308
+ P + V G+ + L C P +SW
Sbjct: 3 LLEQNPR-WRLVPRGQAVNLRCILKNSQYPWMSW 35
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 27.8 bits (61), Expect = 4.5
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 81 IICLAYLSPQANEVQVTPRQQSAPEGSQVTIECKSNDPSATIKWSKDNQEQLPPNMIAGE 140
+C +A EV+VT +Q+ + ++V T N +
Sbjct: 21 FVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQV--- 77
Query: 141 TLIINGITKADEGVYICSIQN 161
L I G+ D G+YIC ++
Sbjct: 78 NLTIQGLRAMDTGLYICKVEL 98
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A
{Mus musculus} PDB: 2e7l_C
Length = 121
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 93 EVQVT--PRQQSAPEGSQVTIECKSN 116
E VT PR + A G +VT+ C
Sbjct: 1 EAAVTQSPRNKVAVTGEKVTLSCNQT 26
Score = 26.8 bits (60), Expect = 7.1
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 276 VTITPSEYVSVRPGEPLTLECEAT 299
VT +P GE +TL C T
Sbjct: 4 VTQSPR-NKVAVTGEKVTLSCNQT 26
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 28.6 bits (64), Expect = 4.5
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 420 VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEY 460
+ + +N+R A + + WQP + ++++Y
Sbjct: 196 IDASTAIDAPSNLRFLATTPNSLLVSWQPPRARITGYIIKY 236
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.4 bits (64), Expect = 5.1
Identities = 31/154 (20%), Positives = 47/154 (30%), Gaps = 35/154 (22%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
VRPG + + C+A+G RP + W+ I P + L
Sbjct: 12 VRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKCIGKNSA-----GTEEKVITVAVEHRPEYGPISPRP 375
D+ +S A ++S+ D+ Y C + GT V V G
Sbjct: 72 ADQSSSTAYMQLSSLTSDDSAVYFCARSDYGAYWGQGT-----LVTVSAAGGGGSGGGGS 126
Query: 376 GADILPDGDEYYRPEPEEGEYVYAVGSNASISCS 409
G G G + S+SC
Sbjct: 127 GGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCR 160
Score = 27.7 bits (62), Expect = 6.9
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 28/102 (27%)
Query: 87 LSPQANEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKWSKDNQEQLPPNMIAGE----- 140
L+ + VTP G V++ C+ S S + W + + P +I
Sbjct: 140 LTQSPVTLSVTP-------GDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIF 192
Query: 141 ---------------TLIINGITKADEGVYICSIQNAQGNVF 167
TL IN + D G+Y C N+ + F
Sbjct: 193 GIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNSWPHTF 234
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 28.2 bits (63), Expect = 5.2
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 431 NIRCSAIGATPISIRWQPLQGYFPSHVVEY 460
N A G+ I W P G + V+Y
Sbjct: 11 NPNAKAAGSRKIHFNWLPPSGKPMGYRVKY 40
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 26.8 bits (60), Expect = 5.8
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 95 QVT--PRQQSAPEGSQVTIECK-SNDPSATIKW 124
QV P+ + EG + C N W
Sbjct: 1 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPW 33
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 27.7 bits (61), Expect = 6.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 92 NEVQVTPRQQSAPEGSQVTIECK-SNDPSATIKW 124
+ V T + EG V + C + S + W
Sbjct: 2 DSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35
Score = 27.7 bits (61), Expect = 6.5
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 23/103 (22%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPTVSW--------------------VKYIAPF 315
VT T V++ G P+ L C P + W F
Sbjct: 4 VTQTEGL-VTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGF 62
Query: 316 DRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSAGTEEKVI 358
L + + +S + SD+ Y C ++ + K++
Sbjct: 63 HATLHKSSSSFH--LQKSSAQLSDSALYYCALFLASSSFSKLV 103
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 27.8 bits (62), Expect = 6.5
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 420 VRQTVKPGDIANIRCSAIGATPISIRWQPLQGYFPSHVVEY 460
++ + G I S I ++ W P + S+ V Y
Sbjct: 89 IKGSTVVGSPKGISFSDITENSATVSWTPPRSRVDSYRVSY 129
Score = 27.4 bits (61), Expect = 7.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 431 NIRCSAIGATPISIRWQPLQGYFPSHVVEY 460
++ S T +S+RW+ F + + Y
Sbjct: 12 DLEVSDPTETTLSLRWRRPVAKFDRYRLTY 41
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 28.1 bits (63), Expect = 6.5
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
V+PG + L C+A+G RP + W+ I P L
Sbjct: 12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT 71
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D+ +S A ++S+ D+ Y C
Sbjct: 72 VDKPSSTAYMQLSSLTSEDSAVYYC 96
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 28.3 bits (63), Expect = 7.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 276 VTITPSEYVSVRPGEPLTLECEATGRPMPT--VSWVK 310
V + S +PG + + C+A+G + WV+
Sbjct: 2 VQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVR 38
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 28.2 bits (61), Expect = 7.5
Identities = 33/298 (11%), Positives = 72/298 (24%), Gaps = 44/298 (14%)
Query: 148 TKADEGVYICSIQNAQGNVFQDYASIQVDKREMPRIRIHPNASQTFIVGD-----RADIQ 202
+ G++ + + A +V + +P + FI I+
Sbjct: 192 SNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGYKNFKNFEITIK 251
Query: 203 CVLEAGEP-------------SPTQTWIRP----------DNDGKFGPDVEVYQELGVLR 239
+ + + +G + + L
Sbjct: 252 ARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELS 311
Query: 240 FNNIATGDEGKYTCIA--ENSAGKEVMNA---YIHVLTLPAVTITPSEYVSVRPGEPLTL 294
+ ++ + S G A I + P + + ++PG P +
Sbjct: 312 YYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPI 371
Query: 295 ECEAT---GRPMPTVSWVKYIAPFDRNLERDELTSRAVYTIASVRESDAGQYKCIGKNSA 351
+ + + + V D N E +L T D G + +
Sbjct: 372 KVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTR-----VDDGVASFVLNLPS 426
Query: 352 GTEEKVITVAVEHRPEYGPISPRPGADILP---DGDEYYRPEPEEGEYVYAVGSNASI 406
G V + R G + Y + + VG + +I
Sbjct: 427 GVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGEHLNI 484
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 27.6 bits (62), Expect = 7.9
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 25/85 (29%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRN------------LE 320
+PGE + + C+AT P + +V +I
Sbjct: 139 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFS 198
Query: 321 RDELTSRAVYTIASVRESDAGQYKC 345
D TS A I +++ D Y C
Sbjct: 199 LDTSTSTAFLQINNLKNEDTATYFC 223
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 28.0 bits (63), Expect = 7.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 340 AGQYKCIGKNSAGTEEKVITVAVEHRPEYGPISPRP 375
AG+++C+G A + K I + E+ P
Sbjct: 389 AGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPE 424
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 26.5 bits (59), Expect = 8.7
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 431 NIRCSAIGATPISIRWQP-----LQGY 452
+ + ++ IS+ W+ ++ Y
Sbjct: 24 EVGVKVLSSSEISVHWEHVLEKIVESY 50
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 26.5 bits (59), Expect = 9.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 426 PGDIANIRCSAIGATPISIRWQP 448
P + IR G T +S+ WQ
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQE 33
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 27.5 bits (61), Expect = 9.0
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 24/84 (28%)
Query: 286 VRPGEPLTLECEATG-------------RPMPTVSWVKYIAPFDRNLERDELTSRAV--- 329
V+P + L+L C TG P + ++ Y++ L SR
Sbjct: 134 VKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITR 193
Query: 330 --------YTIASVRESDAGQYKC 345
+ SV D Y C
Sbjct: 194 DTSKNQYYLDLNSVTTEDTATYYC 217
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 27.8 bits (62), Expect = 9.1
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 411 EPPRITLRPVRQTVKPGDIANIRCSAIGATP--ISIRWQ 447
++ R + G + C P I I+
Sbjct: 28 PQIQVY---SRHPPENGKPNILNCYVTQFHPPHIEIQML 63
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 26.5 bits (59), Expect = 9.6
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
Query: 426 PGDIANIRCSAIGATPISIRWQP-------LQGYFPSHVVEY 460
PG N+R A T I++ W+ +Q Y + Y
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNY----KLYY 55
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 26.5 bits (59), Expect = 9.8
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 426 PGDIANIRCSAIGATPISIRWQP-----LQGYFPSHVVEY 460
PG N + T I + W P + Y + Y
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTIANY----ELVY 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.400
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,251,913
Number of extensions: 439089
Number of successful extensions: 3779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 1090
Length of query: 471
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 374
Effective length of database: 3,993,456
Effective search space: 1493552544
Effective search space used: 1493552544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.5 bits)