BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1706
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And
Sodium
Length = 508
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 18 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 71
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 304 KGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAV 362
KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI AV
Sbjct: 182 KGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAV 241
Query: 363 TQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 242 GQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 287
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIF + LG G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFATLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine
And Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In
Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG+G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFFTLSLGVGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium
And L- Tryptophan
Length = 519
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG+G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFFTLSLGVGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium
And L- Tryptophan
Length = 519
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 294
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N S+ G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILG 294
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open
Conformation In Complex With Fab
Length = 519
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ S + + ++ + +N + + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASAVRKDQDIVLSGLTAATLNEAAEVILG 294
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 18 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 71
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 183 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 242
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 243 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 290
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
Length = 519
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEAAEVILG 294
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 18 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 71
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 183 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 242
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 243 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 290
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 19 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 72
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTAL-FPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T FL+I + + A DG+ + P+F KL + VWI
Sbjct: 184 ISKGIERFAKIAMPTLFCLAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 243
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 244 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 291
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And
Sodium
Length = 517
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 18 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 71
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 181 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 240
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + G
Sbjct: 241 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 288
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG 75
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 302 IWKGVKWTGKVVYFTA-LFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWID 360
I KG++ K+ T + FL+I + + A DG+ + P+F KL + VWI
Sbjct: 187 ISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246
Query: 361 AVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
AV QIFF+ LG G ++ SY + + ++ + +N + + G
Sbjct: 247 AVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEAAEVILG 294
>pdb|4ATY|A Chain A, Crystal Structure Of A Terephthalate 1,2-Cis-
Dihydrodioldehydrogenase From Burkholderia Xenovorans
Lb400
Length = 349
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 392 DAMLVC-----AINSSTSMFAGFVIFSVIGFMAHEQRRPVEEV 429
DA++ C AIN+S FAG+ GF+AHE P E+V
Sbjct: 133 DAVIACPHSETAINASGVRFAGYP-----GFVAHEMGMPAEDV 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.145 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,197,147
Number of Sequences: 62578
Number of extensions: 659468
Number of successful extensions: 1868
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 91
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)