Query psy1706
Match_columns 540
No_of_seqs 184 out of 1700
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3660|consensus 100.0 1.1E-93 2.3E-98 784.3 31.2 433 15-540 29-468 (629)
2 KOG3659|consensus 100.0 9.8E-91 2.1E-95 733.9 28.2 423 20-540 78-510 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 6.4E-87 1.4E-91 732.8 18.9 427 20-540 1-431 (523)
4 COG0733 Na+-dependent transpor 100.0 1.1E-71 2.4E-76 580.1 31.3 373 19-539 4-384 (439)
5 KOG3659|consensus 99.4 3.6E-13 7.9E-18 144.6 11.6 162 207-380 253-443 (629)
6 COG0733 Na+-dependent transpor 99.4 8.3E-13 1.8E-17 139.2 8.2 124 279-409 209-355 (439)
7 KOG3660|consensus 99.2 1.3E-10 2.9E-15 129.1 13.4 218 206-446 214-471 (629)
8 PF00209 SNF: Sodium:neurotran 98.9 2.2E-10 4.8E-15 126.7 1.8 136 282-429 248-414 (523)
9 PF01235 Na_Ala_symp: Sodium:a 92.8 6.9 0.00015 42.3 17.8 61 27-89 25-86 (416)
10 PF05525 Branch_AA_trans: Bran 87.4 14 0.0003 40.2 14.4 56 450-508 271-326 (427)
11 PRK15433 branched-chain amino 85.4 21 0.00046 38.9 14.6 64 441-508 266-329 (439)
12 PF03222 Trp_Tyr_perm: Tryptop 84.4 51 0.0011 35.4 17.0 117 360-487 188-307 (394)
13 PRK11375 allantoin permease; P 83.7 76 0.0017 35.1 22.0 53 452-506 307-360 (484)
14 TIGR00814 stp serine transport 79.4 95 0.0021 33.4 22.6 49 27-81 9-63 (397)
15 PRK15132 tyrosine transporter 75.7 99 0.0022 33.4 15.6 25 463-487 280-304 (403)
16 TIGR00837 araaP aromatic amino 74.0 1E+02 0.0022 32.5 15.2 26 462-487 276-301 (381)
17 PF02028 BCCT: BCCT family tra 73.6 33 0.00073 37.9 11.6 128 401-537 340-471 (485)
18 PF03845 Spore_permease: Spore 69.7 1.4E+02 0.003 30.7 23.0 84 39-129 19-104 (320)
19 PRK10249 phenylalanine transpo 68.7 1.8E+02 0.0039 31.6 25.6 74 4-82 5-79 (458)
20 COG1953 FUI1 Cytosine/uracil/t 68.5 1E+02 0.0022 34.1 13.6 28 210-237 169-196 (497)
21 TIGR00835 agcS amino acid carr 67.9 1.9E+02 0.0041 31.5 23.5 55 27-83 53-107 (425)
22 COG1292 BetT Choline-glycine b 66.6 1.8E+02 0.0038 32.6 15.0 138 368-521 326-470 (537)
23 PRK03356 L-carnitine/gamma-but 64.8 2.4E+02 0.0051 31.5 17.2 127 403-536 354-486 (504)
24 TIGR00930 2a30 K-Cl cotranspor 62.6 3.5E+02 0.0076 32.8 27.4 32 22-53 80-111 (953)
25 PRK15049 L-asparagine permease 61.6 2.6E+02 0.0056 30.9 23.9 61 27-89 36-97 (499)
26 TIGR00796 livcs branched-chain 58.5 2.6E+02 0.0056 29.9 18.5 56 451-509 266-321 (378)
27 TIGR00912 2A0309 spore germina 57.3 2.4E+02 0.0053 29.2 24.0 35 27-62 9-43 (359)
28 COG1114 BrnQ Branched-chain am 56.6 2.7E+02 0.0058 30.3 13.8 62 30-94 14-77 (431)
29 COG0531 PotE Amino acid transp 56.4 2.8E+02 0.006 29.6 26.2 68 19-89 13-81 (466)
30 PRK09928 choline transport pro 56.0 3.7E+02 0.008 31.2 15.7 74 401-477 357-434 (679)
31 PRK10483 tryptophan permease; 52.1 1.4E+02 0.003 32.4 11.1 45 443-487 271-315 (414)
32 TIGR00911 2A0308 L-type amino 49.8 3.9E+02 0.0084 29.3 28.4 61 27-89 50-113 (501)
33 PRK09664 tryptophan permease T 48.5 2.2E+02 0.0048 30.9 12.0 119 357-487 195-316 (415)
34 COG3949 Uncharacterized membra 44.8 4E+02 0.0087 28.1 16.0 47 346-394 170-216 (349)
35 TIGR00842 bcct choline/carniti 41.9 5.1E+02 0.011 28.5 18.3 43 438-480 342-384 (453)
36 PRK09950 putative transporter; 41.5 3.6E+02 0.0077 30.2 12.5 75 403-480 351-430 (506)
37 COG0814 SdaC Amino acid permea 36.3 5.8E+02 0.013 27.5 21.9 56 26-86 14-69 (415)
38 PF13520 AA_permease_2: Amino 36.3 5.4E+02 0.012 27.2 24.6 58 27-89 7-67 (426)
39 PRK10580 proY putative proline 26.9 8.2E+02 0.018 26.3 25.0 62 26-89 16-78 (457)
40 COG1457 CodB Purine-cytosine p 23.9 9.9E+02 0.021 26.2 26.7 76 11-87 10-85 (442)
41 PRK13629 threonine/serine tran 22.4 1.1E+03 0.023 26.0 22.4 54 23-82 17-75 (443)
No 1
>KOG3660|consensus
Probab=100.00 E-value=1.1e-93 Score=784.30 Aligned_cols=433 Identities=55% Similarity=1.032 Sum_probs=404.3
Q ss_pred cccccccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-e
Q psy1706 15 ILNLELNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-K 90 (540)
Q Consensus 15 ~~~~~r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~ 90 (540)
+-+++|++|++ ++++|+|.+||+||+|||||+|+|||||||+|||+++++++|+|+++||+++||++++|++.+| |
T Consensus 29 ~~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrr 108 (629)
T KOG3660|consen 29 DAEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRR 108 (629)
T ss_pred ccccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHH
Confidence 33458999999 6899999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred ecccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccchh
Q psy1706 91 IAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMY 170 (540)
Q Consensus 91 ~~p~~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
++|++||+|+++++++..+++||++++||+++|+++||++++||++|+|+||+++|.+..++..|++.....
T Consensus 109 i~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~-------- 180 (629)
T KOG3660|consen 109 ICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLS-------- 180 (629)
T ss_pred hChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCcccccccccccccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999998876665554332210
Q ss_pred hhccccCccccccCCcHHHHHHHhhhhccCC--CCCCchhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHH
Q psy1706 171 CYINQKNVSTRVLTDPVKEFWERRVLQITDG--INNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFL 248 (540)
Q Consensus 171 c~~~~~~~~~~~~~~~~~~f~~~~vl~~s~~--~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~ 248 (540)
+..+..++..+++.+.+...++. +++.|.++|++++|+.++|++++++++||+|++||++|+++++|+++
T Consensus 181 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyvi 252 (629)
T KOG3660|consen 181 --------NALNFNSPVAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVI 252 (629)
T ss_pred --------chhhhccchhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHH
Confidence 11134567789999988888764 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHHHH
Q psy1706 249 LIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALL 328 (540)
Q Consensus 249 l~~l~i~~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~~~ 328 (540)
++++.+|++|||||.+|++++++|
T Consensus 253 L~iLliRgvTL~Ga~~Gi~~~l~~-------------------------------------------------------- 276 (629)
T KOG3660|consen 253 LIVLLIRGVTLPGAGDGINFYLTP-------------------------------------------------------- 276 (629)
T ss_pred HHHHHHHHccCCCHHHHHHHHHhh--------------------------------------------------------
Confidence 999999999999999999998754
Q ss_pred HhhcCCCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHH
Q psy1706 329 IRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408 (540)
Q Consensus 329 ~~~~~l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~g 408 (540)
||+++.++++|.||+.|+||+++++.|.+++++||+|.++|+.||+.+++..|+..|+++|
T Consensus 277 -------------------~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g 337 (629)
T KOG3660|consen 277 -------------------DWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAG 337 (629)
T ss_pred -------------------hhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHH
Confidence 4677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCC-CcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 409 FVIFSVIGFMAHEQRR-PVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 409 l~ifs~lg~~~~~~g~-~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
+++||++||++++.|. +.++++++|++++|++|||++++||.+.+|+.|||.|++++|++|+++.+|++++++.|+||
T Consensus 338 ~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp- 416 (629)
T KOG3660|consen 338 FAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFP- 416 (629)
T ss_pred HHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-
Confidence 9999999999999999 88889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706 488 LLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540 (540)
Q Consensus 488 ~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~e 540 (540)
.+|.+|+..+..+|++++++|+++++++|.|+++++|+|+++ +.+++++++|
T Consensus 417 ~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~-~~~~~~~~~e 468 (629)
T KOG3660|consen 417 RLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAAS-WSLLFIAIFE 468 (629)
T ss_pred cccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhch-HHHHHHHHHH
Confidence 677888899999999999999999999999999999999997 9999999877
No 2
>KOG3659|consensus
Probab=100.00 E-value=9.8e-91 Score=733.88 Aligned_cols=423 Identities=51% Similarity=1.015 Sum_probs=389.6
Q ss_pred ccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-eecccc
Q psy1706 20 LNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAPIF 95 (540)
Q Consensus 20 r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~~~p~~ 95 (540)
|+.|++ +++|++|+||++||+|||||+|++||||+|++||++++++.|+||++||+++||+.|+|++++| |++|++
T Consensus 78 R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l 157 (629)
T KOG3659|consen 78 RPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPAL 157 (629)
T ss_pred CCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHh
Confidence 889999 6899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccchhhhccc
Q psy1706 96 KGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQ 175 (540)
Q Consensus 96 ~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 175 (540)
||+|++++++++++..||+++++|+++|+++||++++||++|+|+||+++|.+.+..+.| +.+|
T Consensus 158 ~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~------------~~~~---- 221 (629)
T KOG3659|consen 158 KGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNC------------DEEC---- 221 (629)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccC------------chhh----
Confidence 999999999999999999999999999999999999999999999999999886432111 2222
Q ss_pred cCccccccCCcHHHHHHHhhhhccCC--CCCCchhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHHHHHHH
Q psy1706 176 KNVSTRVLTDPVKEFWERRVLQITDG--INNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALL 253 (540)
Q Consensus 176 ~~~~~~~~~~~~~~f~~~~vl~~s~~--~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~l~~l~ 253 (540)
...+|++|||++.+++++++ ++|.|+++|.+.+|++++|+++++.++||+|.+||++|+++++|++++.++.
T Consensus 222 ------ek~s~a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~ill 295 (629)
T KOG3659|consen 222 ------EKTSPAQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILL 295 (629)
T ss_pred ------hccchhHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHH
Confidence 45678999999999999876 9999999999999999999999999999999999999999999987666444
Q ss_pred HHHccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHHHHHhhcC
Q psy1706 254 IRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGIT 333 (540)
Q Consensus 254 i~~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 333 (540)
+|+++
T Consensus 296 irgl~--------------------------------------------------------------------------- 300 (629)
T KOG3659|consen 296 VRGLT--------------------------------------------------------------------------- 300 (629)
T ss_pred Hhccc---------------------------------------------------------------------------
Confidence 55554
Q ss_pred CCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHHHHH
Q psy1706 334 LPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFS 413 (540)
Q Consensus 334 l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ifs 413 (540)
+||+..|+.+++.||++++.++.+|++|++|+||++++|.|.+.+++||+++++|++||++++.++|++.++++|+.+|+
T Consensus 301 l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFs 380 (629)
T KOG3659|consen 301 LPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFS 380 (629)
T ss_pred ccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556677788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh---cCCCccc-ccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccccc
Q psy1706 414 VIGFMAHE---QRRPVEE-VATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLL 489 (540)
Q Consensus 414 ~lg~~~~~---~g~~~~~-~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~ 489 (540)
++||+++. ...+.++ ....||+++|++|||++++||.+.+|+++||+||..+|++|+++.+|.+++.+.|+++..+
T Consensus 381 vLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~e~iit~l~d~~~~~l 460 (629)
T KOG3659|consen 381 VLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFYLSL 460 (629)
T ss_pred HHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhHHHHhccccchhhhHh
Confidence 99999987 5566555 5678999999999999999999999999999999999999999999999999999998788
Q ss_pred ccchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706 490 RRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540 (540)
Q Consensus 490 ~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~e 540 (540)
|++|+..+..+|+..+++|+++++.+|.|+++++|+|..+ +.+++++++|
T Consensus 461 ~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~-~~vl~~Vlie 510 (629)
T KOG3659|consen 461 RKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAG-LLVLFVVLIE 510 (629)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhh-hHHHHHHHHH
Confidence 8999999999999999999999999999999999999995 9999999987
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=6.4e-87 Score=732.80 Aligned_cols=427 Identities=47% Similarity=0.958 Sum_probs=321.3
Q ss_pred ccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-eecccc
Q psy1706 20 LNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAPIF 95 (540)
Q Consensus 20 r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~~~p~~ 95 (540)
|++|++ ++++++|+|||+||+|||||+|++||||+|++||+++++++|+|++++|+++||++|+|++++| |++|++
T Consensus 1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999 6899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccchhhhccc
Q psy1706 96 KGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQ 175 (540)
Q Consensus 96 ~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 175 (540)
||+|+++++.++++++||+++++|+++|+++|+++++||++|+|+||+++|.+.+++++|.. .++
T Consensus 81 ~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~-----------~~~---- 145 (523)
T PF00209_consen 81 KGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSN-----------SSS---- 145 (523)
T ss_dssp HTHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------ccc----
Confidence 99999999999999999999999999999999999999999999999999988655433210 000
Q ss_pred cCccccccCCcHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHHHHHHHHH
Q psy1706 176 KNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIR 255 (540)
Q Consensus 176 ~~~~~~~~~~~~~~f~~~~vl~~s~~~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~l~~l~i~ 255 (540)
.+.+ +.+++.+|||++++++.++++++.|+++|++++++.++|+++++++.||+|+.||+++.+.++|+++++++++|
T Consensus 146 ~~~~--~~~~~~~~ff~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir 223 (523)
T PF00209_consen 146 YNFT--QRISPAEEFFYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIR 223 (523)
T ss_dssp -------------------------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred cccc--cccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEE
Confidence 0111 45678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHHHHHhhcCCC
Q psy1706 256 GITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLP 335 (540)
Q Consensus 256 ~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l~ 335 (540)
++|+||+.+|++++++
T Consensus 224 ~ltl~ga~~Gl~~~~~---------------------------------------------------------------- 239 (523)
T PF00209_consen 224 SLTLPGASEGLKFLFT---------------------------------------------------------------- 239 (523)
T ss_dssp HHT-EEHHHHHHHHHS----------------------------------------------------------------
T ss_pred EEcCCCCCCceEEEec----------------------------------------------------------------
Confidence 9999999999998774
Q ss_pred CccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy1706 336 GAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVI 415 (540)
Q Consensus 336 gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ifs~l 415 (540)
|||+++.++++|.+|++|+||++++|.|.+++++||+++++|..||+..++..|+++++++|+.+|+++
T Consensus 240 -----------pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~ 308 (523)
T PF00209_consen 240 -----------PDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVL 308 (523)
T ss_dssp -----------B-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHH
T ss_pred -----------CCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHH
Confidence 456777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccccccchhh
Q psy1706 416 GFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKEL 495 (540)
Q Consensus 416 g~~~~~~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~~~~r~~ 495 (540)
||++++.+.+++++.++|+++.|+++|+++++||.+++|+++||++++++|++|+++++|++++.++|++++. |++|++
T Consensus 309 g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~-~~~r~~ 387 (523)
T PF00209_consen 309 GFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPIS-RKKRKK 387 (523)
T ss_dssp HHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-----HHHH
T ss_pred hhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccc-hhhccc
Confidence 9999998888888888999999999999999999999999999999999999999999999999999999843 347778
Q ss_pred hHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706 496 FVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540 (540)
Q Consensus 496 ~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~e 540 (540)
++..+|++++++|+++++++|.|++|++|+++++ +.+++++++|
T Consensus 388 ~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~-~~l~~~~l~e 431 (523)
T PF00209_consen 388 VTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGS-ISLLIIALLE 431 (523)
T ss_dssp HHHHHHHHHHHHHHHHHBT---THHHHHHHHTTT-HHHHHHHHHH
T ss_pred eeHHHhhhHeEeccccccccHHHhcchHhhcchh-HHHHHHHHHH
Confidence 8889999999999999999999999999999996 9999888775
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=1.1e-71 Score=580.08 Aligned_cols=373 Identities=31% Similarity=0.594 Sum_probs=333.3
Q ss_pred cccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-eec--
Q psy1706 19 ELNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA-- 92 (540)
Q Consensus 19 ~r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~~~-- 92 (540)
+||+|+| +++|++|+||||||+|||||+++|||||||++||+++++++|+|++++|+++||++|+++++++ |+.
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~ 83 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK 83 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence 8999999 5899999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccchhhh
Q psy1706 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCY 172 (540)
Q Consensus 93 p~~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~ 172 (540)
|.|+++||..++.++.+++||+++.+|.+.|++.|+++.+| .+ .
T Consensus 84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~------~----------------------------- 127 (439)
T COG0733 84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DT------G----------------------------- 127 (439)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC------h-----------------------------
Confidence 78999999999999999999999999999999999998865 10 0
Q ss_pred ccccCccccccCCcHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHH--HHH
Q psy1706 173 INQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYF--LLI 250 (540)
Q Consensus 173 ~~~~~~~~~~~~~~~~~f~~~~vl~~s~~~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~--~l~ 250 (540)
+...++|.+. .+ +........++.+++++.++.+++.|||||.+|++ +|.+ +++
T Consensus 128 ------------~~~~~~f~~~----~~---~~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kim-----MP~Lfvl~i 183 (439)
T COG0733 128 ------------EQFAQLFGQT----IS---NPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIM-----MPLLFVLFI 183 (439)
T ss_pred ------------hHHHHHHHHH----hc---CchHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH-----HHHHHHHHH
Confidence 0012333332 22 13344555567799999999999999999999984 7765 455
Q ss_pred HHHHHHccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHHHHHh
Q psy1706 251 ALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIR 330 (540)
Q Consensus 251 ~l~i~~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~~~~~ 330 (540)
++++|++|||||.||++++++
T Consensus 184 ~Lvi~~~tLpGA~~G~~f~l~----------------------------------------------------------- 204 (439)
T COG0733 184 ILVIRAVTLPGAMEGLKFLFK----------------------------------------------------------- 204 (439)
T ss_pred HHHHHHHcCccHHHHHHHHhc-----------------------------------------------------------
Confidence 788999999999999998874
Q ss_pred hcCCCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHH
Q psy1706 331 GITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFV 410 (540)
Q Consensus 331 ~~~l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ 410 (540)
|||+++.++++|.+|+||+||++++|.|.+.+|+||.++++|+.+++..++..|+.+++++|+.
T Consensus 205 ----------------PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 205 ----------------PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred ----------------CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4566666799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccccc
Q psy1706 411 IFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLR 490 (540)
Q Consensus 411 ifs~lg~~~~~~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~~ 490 (540)
+|+.++.+..+ +++||+++|+++|+++.|||.|++++++||+++.+||+||+++++|+++..++|+++
T Consensus 269 Ifpa~f~~g~~--------~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~---- 336 (439)
T COG0733 269 IFPALFSFGAD--------ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFG---- 336 (439)
T ss_pred HHHHHHHhccC--------CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 99999865433 468999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhc
Q psy1706 491 RRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFF 539 (540)
Q Consensus 491 ~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~ 539 (540)
.+|++++..++.+.+++|+|+.+..|++++|.+|+.+++ +.+.+.++.
T Consensus 337 ~~R~~a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~-~l~plgaL~ 384 (439)
T COG0733 337 ISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSN-ILMPLGALL 384 (439)
T ss_pred cchHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHH-HHHHHHHHH
Confidence 899999999999999999999999999999999999996 877776654
No 5
>KOG3659|consensus
Probab=99.45 E-value=3.6e-13 Score=144.62 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHHHH-HHHHHHccccChhhHHHHhhhhccCCCCCcc-hhh
Q psy1706 207 GVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLI-ALLIRGITLPGAIDGIKRRVLQITDGINNLG-GVR 284 (540)
Q Consensus 207 ~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~l~-~l~i~~ltl~ga~~G~~~~~~p~~~d~~~l~-~~~ 284 (540)
.+..+++++|+++.+..++|...-=|-..-.+....+++.+.++ -+..++ +.+|+.+++.| |++|+. +.+
T Consensus 253 ~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~g-----a~~g~~y~~~~---~~~kl~~~~v 324 (629)
T KOG3659|consen 253 TLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPG-----AKNGIQYYLTP---DIEKLKEPSV 324 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccc-----cccchhheecc---cHHHHhhHHH
Confidence 45556666666666666666543323222222222222222222 234444 24789999865 999998 789
Q ss_pred HHHHHHHH-HHHHHHHHHhh-------------cCcccchhhHHHHhhHHHHHHHHHHHhhcCC------------CCcc
Q psy1706 285 WELAATLL-LVWVICYFCIW-------------KGVKWTGKVVYFTALFPYFLLIALLIRGITL------------PGAI 338 (540)
Q Consensus 285 w~~A~gq~-fslsi~~g~i~-------------~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l------------~gag 338 (540)
|++|.+|+ ||+.+|+|.+. ||+..+..++..++++.++.++.++..-.++ -.+|
T Consensus 325 W~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~g 404 (629)
T KOG3659|consen 325 WIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAG 404 (629)
T ss_pred HHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcC
Confidence 99999999 99999999975 9999999999999999999998665433222 1368
Q ss_pred ccceeEeecC-CCCCCcchHHHHHHHHHHHHHHhHHHHHHhhh
Q psy1706 339 DGIKYYIIPN-FSKLGESEVWIDAVTQIFFSYGLGLGTLVALG 380 (540)
Q Consensus 339 ~gL~f~~~P~-f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~ 380 (540)
||+.|+..|+ .++|+.+..| +.+||.|.+..|.-++++
T Consensus 405 p~lafivy~Eait~~~~s~fW----s~iFFlmL~~lgl~s~~g 443 (629)
T KOG3659|consen 405 PGLAFIVYPEAITNMPYSSFW----SVIFFLMLLTLGLDSMFG 443 (629)
T ss_pred CceEEEehhhHHhcCCchHHH----HHHHHHHHHHHhhHhhhh
Confidence 9999999999 9999999999 899999888777555544
No 6
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.37 E-value=8.3e-13 Score=139.16 Aligned_cols=124 Identities=11% Similarity=0.106 Sum_probs=99.9
Q ss_pred Ccc-hhhHHHHHHHH-HHHHHHHHHhh-------------cCcccchhhHHHHhhHHHHHHHHH-HHhhcCCCCccccce
Q psy1706 279 NLG-GVRWELAATLL-LVWVICYFCIW-------------KGVKWTGKVVYFTALFPYFLLIAL-LIRGITLPGAIDGIK 342 (540)
Q Consensus 279 ~l~-~~~w~~A~gq~-fslsi~~g~i~-------------~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~l~gag~gL~ 342 (540)
+++ +++|++|+||+ ||+|+|+|+|. ++...++..|+..+++++++++.. ...+.+ +++||||.
T Consensus 209 ~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~ 287 (439)
T COG0733 209 KLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLV 287 (439)
T ss_pred HcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeee
Confidence 455 79999999999 99999999985 667788889999999999999954 456666 88999999
Q ss_pred eEeecC-CCCCCcchHHHHHHHHHHHHHHhHHH------HHHhhhccccccCccccchhhHHHHHHHHHHHHHH
Q psy1706 343 YYIIPN-FSKLGESEVWIDAVTQIFFSYGLGLG------TLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGF 409 (540)
Q Consensus 343 f~~~P~-f~~l~~~~vw~~A~~~~fF~l~~g~G------~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl 409 (540)
|+.+|+ |++||.++++ +.+||.+...+| .++...++..++.+.+|+++.+.. ....++.|+
T Consensus 288 Fi~LP~if~~mp~G~~~----~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~~~R~~a~~~~--~~~~fl~gi 355 (439)
T COG0733 288 FIVLPAVFNQMPLGTLF----GILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKATWLI--GILIFLLGI 355 (439)
T ss_pred hhHHHHHHHhCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHH--HHHHHHHhH
Confidence 999999 9999999999 888887555444 445555788889999998877665 334444443
No 7
>KOG3660|consensus
Probab=99.19 E-value=1.3e-10 Score=129.05 Aligned_cols=218 Identities=16% Similarity=0.129 Sum_probs=147.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHHHHHHHHHHccc-cChhhH----HHHhhhhccCCCCCc
Q psy1706 206 GGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITL-PGAIDG----IKRRVLQITDGINNL 280 (540)
Q Consensus 206 g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~l~~l~i~~ltl-~ga~~G----~~~~~~p~~~d~~~l 280 (540)
-++...+.++|+++++++++++.+.=|-+=..+.+. .+..+++++..+.---- .|-..- .+.+ +
T Consensus 214 w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fP-yviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL----------~ 282 (629)
T KOG3660|consen 214 WPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFP-YVILIVLLIRGVTLPGAGDGINFYLTPDWTKL----------L 282 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhH-HHHHHHHHHHHccCCCHHHHHHHHHhhhhHhh----------c
Confidence 378899999999999999999866555444444444 44444444332221111 111111 2222 2
Q ss_pred chhhHHHHHHHH-HHHHHHHHHhh-------------cCcccchhhHHHHhhHHHHHHHHHH-----Hhhc-C---CCCc
Q psy1706 281 GGVRWELAATLL-LVWVICYFCIW-------------KGVKWTGKVVYFTALFPYFLLIALL-----IRGI-T---LPGA 337 (540)
Q Consensus 281 ~~~~w~~A~gq~-fslsi~~g~i~-------------~~~~~~~~~~~~~~~l~~~~i~~~~-----~~~~-~---l~ga 337 (540)
.+++|.+|..|+ ||+|+|+|.++ ||+.++...|+.++++.+++++..+ .++. . +..+
T Consensus 283 ~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~ 362 (629)
T KOG3660|consen 283 DPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKS 362 (629)
T ss_pred ChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCC
Confidence 379999999999 99999999975 9999999999999999998887443 2444 2 2357
Q ss_pred cccceeEeecC-CCCCCcchHHHHHHHHHHHHHHhHHHH------HHhhhccccccCc--cccchhhHHHHHHHHHHHHH
Q psy1706 338 IDGIKYYIIPN-FSKLGESEVWIDAVTQIFFSYGLGLGT------LVALGSYNKFNNN--VYKDAMLVCAINSSTSMFAG 408 (540)
Q Consensus 338 g~gL~f~~~P~-f~~l~~~~vw~~A~~~~fF~l~~g~G~------~~~~~Sy~~~~~~--~~r~a~~~~~~~~~~s~l~g 408 (540)
|+|+.|+.+|+ .++||.+.+| +.+||.|.+..|. .+++.+-..|+.+ +.|+. .+++..|++.++.|
T Consensus 363 g~~LaFi~YP~a~~~~p~~plW----s~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~-~~vl~vcv~~fllG 437 (629)
T KOG3660|consen 363 GPGLAFIAYPEALAQMPLSPLW----SGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRNRRW-IVVLFVCVVGFLLG 437 (629)
T ss_pred CCchhhhhhHHHHHhCcccHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccccch-hhhHHHHHHHHHcc
Confidence 89999999999 9999999999 8999998777763 2222222222222 23333 33334488888888
Q ss_pred HHHHHHHHHhhhhcCCCcccccc---cCccchhhhHHHHhc
Q psy1706 409 FVIFSVIGFMAHEQRRPVEEVAT---SGPGLAFLAYPSAVL 446 (540)
Q Consensus 409 l~ifs~lg~~~~~~g~~~~~~~~---~g~~l~Fv~~p~~~~ 446 (540)
++ +.++.|+++.++.| .+..+.+++..|.+.
T Consensus 438 l~-------~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~ 471 (629)
T KOG3660|consen 438 LP-------LVTEGGIYWFQLFDYYAASWSLLFIAIFECFA 471 (629)
T ss_pred hh-------eecCcchhHHHHHHHHhchHHHHHHHHHHHHH
Confidence 76 78899998765444 235666777666654
No 8
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=98.94 E-value=2.2e-10 Score=126.66 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=91.8
Q ss_pred hhhHHHHHHHH-HHHHHHHHHhh-------------cCcccchhhHHHHhhHHHHHHHHHHHh-----hc---CCCCccc
Q psy1706 282 GVRWELAATLL-LVWVICYFCIW-------------KGVKWTGKVVYFTALFPYFLLIALLIR-----GI---TLPGAID 339 (540)
Q Consensus 282 ~~~w~~A~gq~-fslsi~~g~i~-------------~~~~~~~~~~~~~~~l~~~~i~~~~~~-----~~---~l~gag~ 339 (540)
+++|.+|++|+ ||+++|.|++. ||+..++..|..++++++++++.++.. +. .++++|+
T Consensus 248 ~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~ 327 (523)
T PF00209_consen 248 PKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGP 327 (523)
T ss_dssp HHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CH
T ss_pred HHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCC
Confidence 68999999999 99999999985 788889999999999999888755422 11 2356789
Q ss_pred cceeEeecC-CCCCCcchHHHHHHHHHHHHHHhHHHH------HHhhhccccccCcc--ccchhhHHHHHHHHHHHHHHH
Q psy1706 340 GIKYYIIPN-FSKLGESEVWIDAVTQIFFSYGLGLGT------LVALGSYNKFNNNV--YKDAMLVCAINSSTSMFAGFV 410 (540)
Q Consensus 340 gL~f~~~P~-f~~l~~~~vw~~A~~~~fF~l~~g~G~------~~~~~Sy~~~~~~~--~r~a~~~~~~~~~~s~l~gl~ 410 (540)
|+.|+.+|+ +++||.+++| +.+||.+....|. +++..+...|+.+. .+++..+ ...++..++.+++
T Consensus 328 ~L~Fi~~P~~~~~~p~~~~~----~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~~r~~~~-~~v~~~~~l~gl~ 402 (523)
T PF00209_consen 328 GLAFIVLPEAFSQMPGGRFW----AILFFLMLFLAGLTSQISMLEVIVSALMDEFPISRKKRKKVT-LIVCLVGFLLGLP 402 (523)
T ss_dssp HHHHTHHHHHHTTSTTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----HHHHHH-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCCcCh----HHHHHHHHHHHHhhhcCCceeceeEeeeecCccchhhcccee-HHHhhhHeEeccc
Confidence 999999999 9999999999 8888887655553 33444544444443 2222222 2235566665554
Q ss_pred HHHHHHHhhhhcCCCcccc
Q psy1706 411 IFSVIGFMAHEQRRPVEEV 429 (540)
Q Consensus 411 ifs~lg~~~~~~g~~~~~~ 429 (540)
.+++.|.+..+.
T Consensus 403 -------~~t~~G~~~~~~ 414 (523)
T PF00209_consen 403 -------FCTQGGIYIFDL 414 (523)
T ss_dssp -------HHBT---THHHH
T ss_pred -------cccccHHHhcch
Confidence 335666665443
No 9
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.85 E-value=6.9 Score=42.32 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=48.0
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cccccc
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSV-GGLGVF 89 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~-g~~~~~ 89 (540)
..++++..||.|||---..=..- ||.=-+-+.-..-++|++.=+.|..+||..|+ +.-+-+
T Consensus 25 ~~~ala~~vG~GNI~GVa~AI~~--GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~ 86 (416)
T PF01235_consen 25 LCTALAGTVGTGNIAGVATAIAI--GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEY 86 (416)
T ss_pred HHHHHHhccCcchHHHHHHHHHh--hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCE
Confidence 69999999999999876654433 35556778888899999999999999998885 333344
No 10
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.37 E-value=14 Score=40.18 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Q psy1706 450 GAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIG 508 (540)
Q Consensus 450 ~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l~g 508 (540)
.|+.-.+++=...+++.+||+++++-..-+.++|.+| |.+.+..+.+.|++.++++
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~---kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP---KISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHHHH
Confidence 4566677788888999999999999999999999887 3455555556666666555
No 11
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.40 E-value=21 Score=38.85 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=44.9
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Q psy1706 441 YPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIG 508 (540)
Q Consensus 441 ~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l~g 508 (540)
.|....+--.|+....++=..++++.++|+++.+-...+.+++.++ .+.+..+.+.|+++++++
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~----isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP----LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHHHHHHH
Confidence 3444444335667777888888899999999988888888777765 566666666666666555
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=84.39 E-value=51 Score=35.36 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccc---ccccCccc
Q psy1706 360 DAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEE---VATSGPGL 436 (540)
Q Consensus 360 ~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ifs~lg~~~~~~g~~~~~---~~~~g~~l 436 (540)
.+.-.++++++ ....+.++..|.+++.+..|++........++.. -+-.++++|- .+.++ ..++|.+.
T Consensus 188 ~~lPv~~~Sf~-f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~y--l~w~~~~lg~------l~~~~~~~~~~~~~~~ 258 (394)
T PF03222_consen 188 PALPVLVFSFG-FHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMY--LLWVFSILGS------LPREQFAEAIAQGGNV 258 (394)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHhc------CCHHHHHHHHhcCCCh
Confidence 56666777653 4456677777777666666666555433222221 1223344442 22221 12222221
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 437 AFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 437 ~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
...-+.+++...++....+.-..-++|-.||-++..-+..+.+.|.++.
T Consensus 259 --~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 259 --SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred --HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122234444334444554445456667788888888888888898864
No 13
>PRK11375 allantoin permease; Provisional
Probab=83.67 E-value=76 Score=35.07 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Q psy1706 452 PIWSCLFFIMLLFLGLDSQF-CTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFL 506 (540)
Q Consensus 452 ~~~~~lfF~~l~~~gl~s~i-~~~E~iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l 506 (540)
+...++..+.++++.+++.. +.+-+.-..+...+|++. +|++.+.+..+++.+
T Consensus 307 ~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i--~~~~~~~i~~iig~~ 360 (484)
T PRK11375 307 LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKL--TYKNGVLIASIISLL 360 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCcc--chhhHHHHHHHHHHH
Confidence 33444455556666777754 566666677777788543 344444444344433
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=79.43 E-value=95 Score=33.39 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=30.5
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHH------HHHHHHHHHhc
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPM------FFMELALGQML 81 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pl------l~lE~~lGq~~ 81 (540)
.+...|.++|.|= .-.|..+.+.| .++ .+.+.+++.|+ +++|..+.+..
T Consensus 9 ~~~l~gt~IGaGi-L~LP~~ag~~G----~i~-~li~~l~~~pl~~~~~~ll~~~~l~~~~ 63 (397)
T TIGR00814 9 MLGLYGTAIGAGV-LFLPIQAGLGG----LWV-LVLMAIIAYPLTYFGHRALARFLLSSKN 63 (397)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhCH----HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5888999999864 56787754444 233 34455566676 34566565544
No 15
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=75.72 E-value=99 Score=33.38 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 463 LFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 463 ~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
+++-.+|-++.-.+..+.+.|.+++
T Consensus 280 ~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 280 DLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466778888888888999998853
No 16
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=74.00 E-value=1e+02 Score=32.47 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=17.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 462 LLFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 462 l~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
-.++-.+|..+..-+..+.+.|.+++
T Consensus 276 ~~~al~tS~~g~~l~~~d~l~~~~~~ 301 (381)
T TIGR00837 276 SNFALASSFLGVTLGLFDYLADLFKF 301 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455577777777777888888764
No 17
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=73.63 E-value=33 Score=37.93 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hcCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHH
Q psy1706 401 SSTSMFAGFVIFSVIGFMAH----EQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEG 476 (540)
Q Consensus 401 ~~~s~l~gl~ifs~lg~~~~----~~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~ 476 (540)
.+.--+.+..-|++.|-.+- ++..+..+..++|+. .+..+.+.++|.+++...++.+.+++.=+||.=+...+
T Consensus 340 ~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~---~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~ 416 (485)
T PF02028_consen 340 LLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPE---AALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYV 416 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HH---HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44555566777777775332 122233332334443 34566689999999999999998888888777776665
Q ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhh
Q psy1706 477 FITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLM 537 (540)
Q Consensus 477 iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~ 537 (540)
+-+.-.++-+ -+++.....-|++...+++.+...+|...++-+--..+ ++..++.
T Consensus 417 la~~s~~~~~----ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~--lP~~~v~ 471 (485)
T PF02028_consen 417 LAMLSSKGDE----EPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGG--LPFSFVM 471 (485)
T ss_dssp HHHHHCTTTS----SS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCCC----CCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHHHHH
Confidence 5554444311 11222223333344444555555688666555544443 5544443
No 18
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=69.69 E-value=1.4e+02 Score=30.68 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=48.7
Q ss_pred cccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccccc-eecccccccchhhHHHHHHHHHHHHHH
Q psy1706 39 NVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLS-VGGLGVF-KIAPIFKGVGYAAAVMSCWMNIYYIVI 116 (540)
Q Consensus 39 niwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~-~g~~~~~-~~~p~~~GiG~~~~~~~~~i~~yY~vi 116 (540)
.+...|....+..|.+. ++ .+.-.+.+++..++-..++++.+ ++..+.. +.. .|.+|. +.++....|+-..
T Consensus 19 ~~l~~p~~l~~~~~d~W-i~-~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~--Gk~lg~---ii~~~~~l~~l~~ 91 (320)
T PF03845_consen 19 GILFLPAILAEQAGDAW-IS-VLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLF--GKWLGK---IINLLYILYFLLI 91 (320)
T ss_pred HHHHHHHHHHHHcCCcH-HH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHh--CcHHHH---HHHHHHHHHHHHH
Confidence 45678888777765554 33 34555667777777777777644 4444433 333 244554 3444556666666
Q ss_pred HHHHHHHHHHhhc
Q psy1706 117 LAWAVFYFFMSLR 129 (540)
Q Consensus 117 ~aw~l~Y~~~s~~ 129 (540)
.+..+..+..-.+
T Consensus 92 ~~~~lr~~~~~i~ 104 (320)
T PF03845_consen 92 SALVLREFSEFIK 104 (320)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=68.70 E-value=1.8e+02 Score=31.62 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCCCCCCCCccccccccc-ccCCchhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1706 4 NKKSPVDTGDQILNLELN-QYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLS 82 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~r~-~~~~~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~ 82 (540)
.++|+-+.+++..+++|+ ..++..+-.+|..+|-|=+.- |....+++|.+-++.|++. |+..+..=.++++.++
T Consensus 5 ~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~-~g~~~~~aGp~~~l~~li~----~~~~~~~~~~~aEl~~ 79 (458)
T PRK10249 5 STVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG-IGPAIQMAGPAVLLGYGVA----GIIAFLIMRQLGEMVV 79 (458)
T ss_pred cccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHH-HHHHHHhcCcHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344444455554444553 123346889999999986665 5556677776655566543 4444444455555544
No 20
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=68.48 E-value=1e+02 Score=34.08 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccceE
Q psy1706 210 WELAATLLLVWVICYFCIWKGVKWTGKV 237 (540)
Q Consensus 210 ~~l~~~~~~~w~~~~~~~~~Gi~~~gkv 237 (540)
-.-++|.++-|.+....+.+|.|+..|.
T Consensus 169 t~~~i~F~ifW~l~~l~~~~g~~~Ir~~ 196 (497)
T COG1953 169 TLELICFFIFWVLQLLVLFKGMESIRKF 196 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3456788999999999999998876554
No 21
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=67.87 E-value=1.9e+02 Score=31.54 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=46.7
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSV 83 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~ 83 (540)
..+.++..||.||+--.|.- .+.|| .=-+-+.-...++|...-+.|..++|..|+
T Consensus 53 ~~~ala~~VG~GnI~Gva~A-i~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 53 LFTSLAARVGIGNIVGVATA-IAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE 107 (425)
T ss_pred HHHHHHHHHhhhHHHHHHHH-HHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 58899999999999999998 55664 444667778888999999999999999884
No 22
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=66.59 E-value=1.8e+02 Score=32.61 Aligned_cols=138 Identities=21% Similarity=0.148 Sum_probs=70.4
Q ss_pred HHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----c-ccccccCccchhhhHH
Q psy1706 368 SYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRP----V-EEVATSGPGLAFLAYP 442 (540)
Q Consensus 368 ~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ifs~lg~~~~~~g~~----~-~~~~~~g~~l~Fv~~p 442 (540)
+-+...|.+.+-.|. .+.-+..++++ .++-.+.+..-|++.|-.+-+.... . ......|+. .++.
T Consensus 326 sWsPfVG~FIARISr-----GRTIREfi~gv--l~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e---~alf 395 (537)
T COG1292 326 SWSPFVGMFIARISR-----GRTIREFIVGV--LLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPE---TALF 395 (537)
T ss_pred HHhHHHHHHHHHHhC-----CccHHHHHHHH--HHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchh---hHHH
Confidence 456677777666543 22223334333 3344444566677766543222111 1 111112222 3456
Q ss_pred HHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhcccccccchhhhHHHHHHHHHHHHhhhhhcCcchHH
Q psy1706 443 SAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMV--DEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIF 520 (540)
Q Consensus 443 ~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~--d~f~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~ 520 (540)
+.++++|.+++.+.++.+.++..-++|+=+-.-++-..-. ++.| .++.++.. +++..++++.+...+|..-+
T Consensus 396 ~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~p----p~~~r~~W--~v~~~~ia~~lL~~ggl~aL 469 (537)
T COG1292 396 QVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDP----PRWVRVFW--GVLIGLIAAVLLLIGGLEAL 469 (537)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCC----hHHHHHHH--HHHHHHHHHHHHHhCCHHHH
Confidence 6789999999999999998888888776553333222211 2223 23333333 33334445555666774333
Q ss_pred H
Q psy1706 521 Q 521 (540)
Q Consensus 521 ~ 521 (540)
+
T Consensus 470 q 470 (537)
T COG1292 470 Q 470 (537)
T ss_pred H
Confidence 3
No 23
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=64.76 E-value=2.4e+02 Score=31.53 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhh---cC-CCcccc-cccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy1706 403 TSMFAGFVIFSVIGFMAHE---QR-RPVEEV-ATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGF 477 (540)
Q Consensus 403 ~s~l~gl~ifs~lg~~~~~---~g-~~~~~~-~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~i 477 (540)
+--+.+..-|++.|-.+-. .| .+..+. .++|. -.+..+.+.++|.+.+.+.++.+++++.=+||+=+..-++
T Consensus 354 ~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~~~~---~~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS~t~vl 430 (504)
T PRK03356 354 GLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGV---ARAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTL 430 (504)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHcCchhHHHHHhccCh---hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444556666666643221 12 222232 22332 3456777899999999999988888877666666544444
Q ss_pred HHHHHHhcccccc-cchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhh
Q psy1706 478 ITAMVDEWPHLLR-RRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFL 536 (540)
Q Consensus 478 v~~l~d~f~~~~~-~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~ 536 (540)
-..-.+.-++... .++.++.+.+. .-.+++.+..-+|..-++-.--..+ ++..++
T Consensus 431 a~~ts~g~~~~~~p~~~~ri~W~v~--ig~ia~~Ll~~GGl~~lQt~sii~a--lPf~~i 486 (504)
T PRK03356 431 AMSTCREVRDGEEPPLLVRIGWSIL--VGIIGIVLLALGGLKPIQTAIIAGG--CPLFFV 486 (504)
T ss_pred HHHHcCCCCCCCCCCcchhhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHH
Confidence 4333322210111 22223333332 2333444445567544444433333 444444
No 24
>TIGR00930 2a30 K-Cl cotransporter.
Probab=62.62 E-value=3.5e+02 Score=32.76 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=26.7
Q ss_pred ccCCchhhhhhhhhccccccccchhhhhccce
Q psy1706 22 QYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGG 53 (540)
Q Consensus 22 ~~~~~~~~~~g~avGlgniwrFP~l~~~~GGg 53 (540)
-|.+-.+-|++.-+|.+=+.|+++++.+-|-+
T Consensus 80 ~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~ 111 (953)
T TIGR00930 80 WVMGVLVPCLLNIWGVILFLRLSWIVGQAGIG 111 (953)
T ss_pred eeEeeeHhhhHhHheeeeeeeHHHHHHhhhHH
Confidence 35555688899999999999999999988844
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=61.64 E-value=2.6e+02 Score=30.91 Aligned_cols=61 Identities=21% Similarity=0.117 Sum_probs=41.6
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccc
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLT-AILAGMPMFFMELALGQMLSVGGLGVF 89 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~-l~~~g~Pll~lE~~lGq~~~~g~~~~~ 89 (540)
.+-.+|.++|-|=+--... ..+++|.+-++.|+++ ++.+.+..-+.|++- ++-+.|..-.|
T Consensus 36 ~~i~~G~~IGsGiF~~~g~-~~~~aGp~~il~~li~~i~~~~v~~slaELas-~~P~aGg~y~y 97 (499)
T PRK15049 36 QMIAIGGAIGTGLFLGAGA-RLQMAGPALALVYLICGLFSFFILRALGELVL-HRPSSGSFVSY 97 (499)
T ss_pred HHHhhhccccchHHHhhHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCHHHH
Confidence 5788899999987766555 4567776667788664 444555666778774 55556666667
No 26
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=58.48 E-value=2.6e+02 Score=29.94 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh
Q psy1706 451 APIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGF 509 (540)
Q Consensus 451 ~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l~gl 509 (540)
|+.-..+.=...+++.++|+++.+-..-+.+.+.++ |.+.+......++.+++++.
T Consensus 266 G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~---k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 266 GSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP---KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHH
Confidence 444455556667778889999988887777777666 25555555556666555543
No 27
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=57.30 E-value=2.4e+02 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=25.3
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHH
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLT 62 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~ 62 (540)
..-.+|..+|-| +.-.|....+.+|-.=-+.+++.
T Consensus 9 ~~l~~~~~iG~g-il~~P~~~~~~a~~~~wi~~ll~ 43 (359)
T TIGR00912 9 IFLISSTMIGSG-LLTLPALVSQSAGQDGWISIILG 43 (359)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHhccCCCeeHHHHHH
Confidence 456677888887 89999998888776555555443
No 28
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=56.65 E-value=2.7e+02 Score=30.27 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=38.9
Q ss_pred hhhhhhccccccccchhhhhccceehhHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccccc-eeccc
Q psy1706 30 KPRLAIGLGNVWRFPYLCYKNGGGAFLVPYL-LTAILAGMPMFFMELALGQMLSVGGLGVF-KIAPI 94 (540)
Q Consensus 30 ~~g~avGlgniwrFP~l~~~~GGgaFlipY~-i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~~~p~ 94 (540)
..+.=.|.||+ -||-...++-|-.+..+.+ +++--+|+|++-. .++...++ |--+.. |+.|.
T Consensus 14 LFalFFGAGNl-IFPP~LG~~aG~~~~~A~lGFllTgVglPlLgi-Ia~a~~g~-~~~~l~~~i~~~ 77 (431)
T COG1114 14 LFALFFGAGNL-IFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGI-IAVALYGG-GVESLATRIGPW 77 (431)
T ss_pred HHHHHhcCCCc-cCChhhhhhcCccHHHHHHHHHHHHhhHHHHHH-HHhhccCC-CHHHHhhhccch
Confidence 34445789998 5888888888777777664 5566688888755 33433333 444444 56553
No 29
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=56.42 E-value=2.8e+02 Score=29.62 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=43.9
Q ss_pred cccccCCchhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccc
Q psy1706 19 ELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMP-MFFMELALGQMLSVGGLGVF 89 (540)
Q Consensus 19 ~r~~~~~~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~P-ll~lE~~lGq~~~~g~~~~~ 89 (540)
+.+.|.......+|.++|.|-+-- |......+ ++..+.+++..++.... +.+.|++- ++.+.|..-.|
T Consensus 13 ~l~~~~~~~~~~~~~~~~~gif~~-~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~GG~y~~ 81 (466)
T COG0531 13 KLGLFDLLTALGVGSMIGSGIFAL-PGSAAGLA-PAAILAWLIAGIIILFLALSYAELSS-AIPSAGGAYAY 81 (466)
T ss_pred CcchHHHHHHHHHHhhHhhhhHhh-hhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeee
Confidence 344566567788888888444433 33333333 33444476666666666 78889988 88888877777
No 30
>PRK09928 choline transport protein BetT; Provisional
Probab=56.00 E-value=3.7e+02 Score=31.17 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----cCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHH
Q psy1706 401 SSTSMFAGFVIFSVIGFMAHE----QRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEG 476 (540)
Q Consensus 401 ~~~s~l~gl~ifs~lg~~~~~----~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~ 476 (540)
.++-.+.++..|++.|-.+-. +..++.+...+++ -.++.+.+.++|.+.+.+.++.+++++.=+||+=+..-+
T Consensus 357 llvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~---~~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~s~V 433 (679)
T PRK09928 357 LIIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHP---ERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALV 433 (679)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcch---hhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 334445556677777753321 1122222222232 346777899999999999888888777766665554433
Q ss_pred H
Q psy1706 477 F 477 (540)
Q Consensus 477 i 477 (540)
+
T Consensus 434 l 434 (679)
T PRK09928 434 L 434 (679)
T ss_pred H
Confidence 3
No 31
>PRK10483 tryptophan permease; Provisional
Probab=52.13 E-value=1.4e+02 Score=32.45 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=26.9
Q ss_pred HHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 443 SAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 443 ~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
+.+++...+...+.+.=..-+++-.+|-++.-.+..+.+.|.++.
T Consensus 271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~ 315 (414)
T PRK10483 271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF 315 (414)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334443333333333333344566778888888888999998863
No 32
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=49.80 E-value=3.9e+02 Score=29.34 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=35.4
Q ss_pred hhhhhhhhhccccccccchhhhhcccee--hhHHHHHHHH-HHHHHHHHHHHHHHHhcCCCccccc
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGA--FLVPYLLTAI-LAGMPMFFMELALGQMLSVGGLGVF 89 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGga--FlipY~i~l~-~~g~Pll~lE~~lGq~~~~g~~~~~ 89 (540)
+...+|..+|.| +...|....+++|.+ .++.|+++.+ .+..=+.+.|++- ++-+.|..-.|
T Consensus 50 ~~l~vg~iiGsG-if~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas-~~P~sGG~y~~ 113 (501)
T TIGR00911 50 VGIIVGTIIGSG-IFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGT-TIPKSGGEYNY 113 (501)
T ss_pred hHhheeceEEee-EeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCchhhh
Confidence 455556677765 777888778887753 4566655432 2333345566554 34455666666
No 33
>PRK09664 tryptophan permease TnaB; Provisional
Probab=48.48 E-value=2.2e+02 Score=30.90 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc---cccC
Q psy1706 357 VWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEV---ATSG 433 (540)
Q Consensus 357 vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~ifs~lg~~~~~~g~~~~~~---~~~g 433 (540)
+| .+.-..+++.+. -+.+.++..|.+++.+..|++.+.... +.++.=+...+ +..+..+.+++ .++|
T Consensus 195 i~-~alPVl~~SFgf-h~iIPsl~~y~~~d~~~~~kaIl~Gs~---IpLviY~~W~~-----~ilG~lp~~~~~~~~~~g 264 (415)
T PRK09664 195 IF-MALPVCLASFGF-HGNIPSLIICYGKRKDKLIKSVVFGSL---LALVIYLFWLY-----CTMGNIPRESFKAIISSG 264 (415)
T ss_pred HH-HHHHHHHHhhhC-CCcchHHHHHhCccHHHHHHHHHHHHH---HHHHHHHHHHH-----HHhcCCCHHHHHHHHHcC
Confidence 44 456666666533 456777777866555555665544432 22221111111 11122333322 1222
Q ss_pred ccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706 434 PGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPH 487 (540)
Q Consensus 434 ~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~ 487 (540)
..+.=+ .-+..++ ..++....+.=+--+++-.+|-++.-.+..+.+.|.++.
T Consensus 265 ~nv~~l-~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~ 316 (415)
T PRK09664 265 GNVDSL-VKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI 316 (415)
T ss_pred CCchHH-HHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 221110 1111222 223333333223334466778888888889999998863
No 34
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=44.76 E-value=4e+02 Score=28.11 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=28.1
Q ss_pred ecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchh
Q psy1706 346 IPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAM 394 (540)
Q Consensus 346 ~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~ 394 (540)
.+++.+ .++-+.+|.+..-+-++.+.+.+.++++..+.+++..+.+.
T Consensus 170 ~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l 216 (349)
T COG3949 170 QIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGL 216 (349)
T ss_pred hhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhh
Confidence 444555 34444556665555677888889888865555544444433
No 35
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=41.88 E-value=5.1e+02 Score=28.50 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=31.9
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy1706 438 FLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITA 480 (540)
Q Consensus 438 Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~ 480 (540)
-.+..+.+.++|.+.+.+.++.+.+++.=.||+=+..-++-..
T Consensus 342 ~~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS~s~vla~~ 384 (453)
T TIGR00842 342 ARALFGLLQALPLGTITSALALIVIIIFFITSADSGALVLANT 384 (453)
T ss_pred hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3467788999999999999998888777776666655444433
No 36
>PRK09950 putative transporter; Provisional
Probab=41.49 E-value=3.6e+02 Score=30.16 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhhh---cC-CCccccc-ccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy1706 403 TSMFAGFVIFSVIGFMAHE---QR-RPVEEVA-TSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGF 477 (540)
Q Consensus 403 ~s~l~gl~ifs~lg~~~~~---~g-~~~~~~~-~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~i 477 (540)
.-.+.+...|++.|-.+-. .| .+..+.. ++|. -.+..+.+.++|.+.+.+.++.+.+++.=.||+=+..-++
T Consensus 351 ~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~~~---~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~s~vl 427 (506)
T PRK09950 351 GSSVGCWFFFGVLESYAIHQFINGVINVPQILNTLGG---ETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMDAVAYTM 427 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHccCc---chHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344455666666643221 22 2232322 3343 3456777999999999999999888877777666655444
Q ss_pred HHH
Q psy1706 478 ITA 480 (540)
Q Consensus 478 v~~ 480 (540)
-..
T Consensus 428 a~~ 430 (506)
T PRK09950 428 AAT 430 (506)
T ss_pred HHH
Confidence 433
No 37
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=36.34 E-value=5.8e+02 Score=27.52 Aligned_cols=56 Identities=27% Similarity=0.172 Sum_probs=35.4
Q ss_pred chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy1706 26 TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGL 86 (540)
Q Consensus 26 ~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~ 86 (540)
-++..+|.++|.| +...|+-....| +.|=++++++.+.=..+-...+=|..++.+.
T Consensus 14 ~vl~l~gT~IGAG-vL~lP~a~~~~G----~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~ 69 (415)
T COG0814 14 GVLILAGTAIGAG-VLFLPVAFGGGG----FWPGLLLLIIAWPLTYLSLLLLLEALLSSPN 69 (415)
T ss_pred HHHHHHccccccc-hhhhhHHhcCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3799999999997 678999865443 3444445555555555555555555444443
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=36.30 E-value=5.4e+02 Score=27.16 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=36.0
Q ss_pred hhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHH--HHHHHHHHHHHHH-hcCCCccccc
Q psy1706 27 SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILA--GMPMFFMELALGQ-MLSVGGLGVF 89 (540)
Q Consensus 27 ~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~--g~Pll~lE~~lGq-~~~~g~~~~~ 89 (540)
+...+|..+|.|.+.- | ...++|..-.+.+++..++. ..=+.+.|+ ++ +.+.|..-.|
T Consensus 7 ~~l~~~~~~g~gi~~~-~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el--~~~~p~~GG~y~~ 67 (426)
T PF13520_consen 7 IALVIGSIIGSGIFFS-P--AAASAGPSAILAWIIAALLFFLPIALSYAEL--SSAYPSAGGIYVW 67 (426)
T ss_dssp HHHHHHCHHTTTTTTH-H--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHH--HTTTTSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHH-H--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCCcCeeeeh
Confidence 4556777788777553 3 45556666666666554544 344555677 44 6677777778
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=26.87 E-value=8.2e+02 Score=26.35 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=41.8
Q ss_pred chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccc
Q psy1706 26 TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAIL-AGMPMFFMELALGQMLSVGGLGVF 89 (540)
Q Consensus 26 ~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~-~g~Pll~lE~~lGq~~~~g~~~~~ 89 (540)
.+.-.+|..+|-|=+ --|....+.+|..-++.|++..++ +.+.+.+.|++- ++-+.|..-.|
T Consensus 16 ~~~i~vg~~IG~Gif-~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s-~~P~~Gg~y~y 78 (457)
T PRK10580 16 IRFMALGSAIGTGLF-YGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSV-HNPAASSFSRY 78 (457)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCHHHH
Confidence 357888999998855 445566667766557888776555 667777788765 45555655555
No 40
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=23.86 E-value=9.9e+02 Score=26.23 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=38.7
Q ss_pred CCcccccccccccCCchhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy1706 11 TGDQILNLELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLG 87 (540)
Q Consensus 11 ~~~~~~~~~r~~~~~~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~ 87 (540)
..|.++|.||+.|.+...--.|.+.++..+|--=.+..--+=...++.=++--++-++++.+ .-.+|+.++....-
T Consensus 10 ~~~~vp~~~r~~~~~~~~vWfga~~~ias~~~G~ll~~~L~~~~si~aillG~llG~i~~A~-~s~~Ga~~Glpqmi 85 (442)
T COG1457 10 SIEPVPEESRKGWLNLFLVWFGANFTIASMVTGGLLVPGLSFGQSLLAILLGNLLGGIFMAY-FSYQGARTGLPQMI 85 (442)
T ss_pred CCCCCChhhhhcchhHHHHHHHhHhHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH-HHHhccccCCChhe
Confidence 46778888899998754444555555555554322211111113344444444444444433 34566666554443
No 41
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=22.38 E-value=1.1e+03 Score=26.02 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=34.0
Q ss_pred cCCc----hhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHH-HHHHHhcC
Q psy1706 23 YGGT----SPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFME-LALGQMLS 82 (540)
Q Consensus 23 ~~~~----~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE-~~lGq~~~ 82 (540)
|++. .++..|-|||-| +.-.|-.....| +...+.+.+++-|+++.- ..+=++..
T Consensus 17 w~~~d~~W~l~l~GTAIGAG-mLfLPI~~g~~G-----f~p~lillll~~p~m~~s~l~L~e~~L 75 (443)
T PRK13629 17 WRKSDTTWTLGLFGTAIGAG-VLFFPIRAGFGG-----LIPILLMLVLAYPIAFYCHRALARLCL 75 (443)
T ss_pred CccccchHHHHHHHHHHhHH-HHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7663 599999999987 456788777555 333444555555555443 55555433
Done!