Query psy1706
Match_columns 540
No_of_seqs 184 out of 1700
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:50:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 1.8E-84 6.1E-89 704.8 26.4 398 17-540 2-419 (519)
2 2a65_A Leutaa, Na(+):neurotran 99.5 6.8E-15 2.3E-19 159.7 4.9 218 207-444 167-420 (519)
3 2jln_A MHP1; hydantoin, transp 62.9 1.6E+02 0.0053 31.1 23.6 51 455-507 298-350 (501)
4 3l1l_A Arginine/agmatine antip 33.9 3.7E+02 0.013 26.8 22.7 35 26-62 15-49 (445)
5 4ain_A Glycine betaine transpo 33.1 3.9E+02 0.013 28.6 12.7 67 402-473 363-432 (539)
6 4djk_A Probable glutamate/gamm 30.3 4.6E+02 0.016 26.8 22.1 58 26-89 18-78 (511)
7 3gia_A Uncharacterized protein 27.6 4.7E+02 0.016 26.1 24.5 37 26-63 13-49 (444)
8 2wsw_A BCCT family betaine/car 22.5 7.1E+02 0.024 26.3 12.3 69 402-473 358-431 (509)
9 3u85_B Histone-lysine N-methyl 13.4 45 0.0015 19.2 0.2 9 40-48 2-10 (21)
10 3dh4_A Sodium/glucose cotransp 8.8 1.5E+03 0.052 23.4 10.7 44 440-485 309-352 (530)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=1.8e-84 Score=704.84 Aligned_cols=398 Identities=24% Similarity=0.407 Sum_probs=363.4
Q ss_pred cccccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHH----hcCCCccccc
Q psy1706 17 NLELNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQ----MLSVGGLGVF 89 (540)
Q Consensus 17 ~~~r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq----~~~~g~~~~~ 89 (540)
+.||++|++ +++||+|+||||||+|||||+|+|||||||++||+++++++|+|++++|+++|| ++|+|++++|
T Consensus 2 ~~~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~ 81 (519)
T 2a65_A 2 EVKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIF 81 (519)
T ss_dssp ---CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHH
T ss_pred CcccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHH
Confidence 457999998 689999999999999999999999999999999999999999999999999999 8888999999
Q ss_pred -eeccc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCccCCCCCCCccCCcccccccccccccccc
Q psy1706 90 -KIAPI--FKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVP--WRNCNNFWNTKNCVNPYERVGLKCWNATSTL 164 (540)
Q Consensus 90 -~~~p~--~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lp--W~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~ 164 (540)
|++|. |||+|+++++.++++++||+++++|+++|+++|+++++| |.+|. +|
T Consensus 82 ~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~------~~------------------ 137 (519)
T 2a65_A 82 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT------DP------------------ 137 (519)
T ss_dssp HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C------CH------------------
T ss_pred HHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC------Cc------------------
Confidence 78876 999999999999999999999999999999999999999 54321 00
Q ss_pred cccchhhhccccCccccccCCcHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHhhhhcccc-cccceEEEecch
Q psy1706 165 YSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGV-KWTGKVVYFTAL 243 (540)
Q Consensus 165 ~~~~~~c~~~~~~~~~~~~~~~~~~f~~~~vl~~s~~~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi-~~~gkv~~~~~~ 243 (540)
+| ..+|.++||++ +++.++++++.|+++|+++++++++|++++.++.||+ |.++|+.+++++
T Consensus 138 -----~~-----------~~~~~~~~f~~-~l~~~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp 200 (519)
T 2a65_A 138 -----DS-----------ILRPFKEFLYS-YIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP 200 (519)
T ss_dssp -----HH-----------HHHHHHHHHHH-HHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred -----cc-----------ccCcHHHHHHH-HHCCCCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 01355677765 6788889999999999999999999999999999999 569999999999
Q ss_pred hHHHHHHHHHHHHccccC----hhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhH
Q psy1706 244 FPYFLLIALLIRGITLPG----AIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALF 319 (540)
Q Consensus 244 ~p~~~l~~l~i~~ltl~g----a~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l 319 (540)
+|+++++++++|++|||| |.||++|+++
T Consensus 201 ~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~------------------------------------------------ 232 (519)
T 2a65_A 201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWT------------------------------------------------ 232 (519)
T ss_dssp HHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc------------------------------------------------
Confidence 999999999999999999 9999998874
Q ss_pred HHHHHHHHHHhhcCCCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHH
Q psy1706 320 PYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAI 399 (540)
Q Consensus 320 ~~~~i~~~~~~~~~l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~ 399 (540)
|||+++.++++|.+|++|+||++++|.|.+++++||+++++|+.||+..++..
T Consensus 233 ---------------------------Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~ 285 (519)
T 2a65_A 233 ---------------------------PDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATL 285 (519)
T ss_dssp ---------------------------CCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHH
T ss_pred ---------------------------CCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHH
Confidence 45677777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCC-cccccccC-ccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy1706 400 NSSTSMFAGFVIFSVIGFMAHEQRRP-VEEVATSG-PGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGF 477 (540)
Q Consensus 400 ~~~~s~l~gl~ifs~lg~~~~~~g~~-~~~~~~~g-~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~i 477 (540)
|+.+++++|+.+|+.+||++ .|.+ +.|++++| ++|+|+++|+++++||++++|+++||++++++|++|+++++|++
T Consensus 286 n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~ 363 (519)
T 2a65_A 286 NEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPM 363 (519)
T ss_dssp HHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 99999999999999999987 4666 66677889 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhcC-cchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706 478 ITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQG-GMYIFQIFDSYAVSGFSLLFLMFFE 540 (540)
Q Consensus 478 v~~l~d~f~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~-G~~~~~~~d~~~~~~~~l~~~~~~e 540 (540)
++.++|+++ ++|++++.++|++++++|+|+++++ | +|++|+++++ +.+++.+++|
T Consensus 364 vt~l~D~~~----~~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~-~~l~~~~l~~ 419 (519)
T 2a65_A 364 IAFLEDELK----LSRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGT-IGVVFFGLTE 419 (519)
T ss_dssp HHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHhhC----CcHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhH-HHHHHHHHHH
Confidence 999999997 7899999999999999999999998 8 9999999985 9999998876
No 2
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.50 E-value=6.8e-15 Score=159.66 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=151.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHHHHHHHH--HHc---cccChhhHHHHhhhhccCCCCCcc
Q psy1706 207 GVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLI--RGI---TLPGAIDGIKRRVLQITDGINNLG 281 (540)
Q Consensus 207 ~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~l~~l~i--~~l---tl~ga~~G~~~~~~p~~~d~~~l~ 281 (540)
++...++++|+++++++++++.||+||..|+..-...+-.+++++..+ -+- ..+|-..-++--+ +++.
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~-------s~L~ 239 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDF-------EKLK 239 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCH-------HHhC
Confidence 456677899999999999999999999999987776666665554322 110 1122222222112 3454
Q ss_pred -hhhHHHHHHHH-HHHHHHHHHhh-------------cCcccchhhHHHHhhHHHHHHHHHH---HhhcC-CC---Ccc-
Q psy1706 282 -GVRWELAATLL-LVWVICYFCIW-------------KGVKWTGKVVYFTALFPYFLLIALL---IRGIT-LP---GAI- 338 (540)
Q Consensus 282 -~~~w~~A~gq~-fslsi~~g~i~-------------~~~~~~~~~~~~~~~l~~~~i~~~~---~~~~~-l~---gag- 338 (540)
+++|.+|++|+ ||+|+|+|++. ||+.+++..|+.++++++++++..+ ..+.. .| ++|
T Consensus 240 ~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~ 319 (519)
T 2a65_A 240 DPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGA 319 (519)
T ss_dssp CHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCC
Confidence 68999999999 99999999985 7889999999999999999988432 23443 23 567
Q ss_pred ccceeEeecC-CCCCCcchHHHHHHHHHHHHHHhHHHH------HHhhhccccccCccccchhhHHHHHHHHHHHHHHHH
Q psy1706 339 DGIKYYIIPN-FSKLGESEVWIDAVTQIFFSYGLGLGT------LVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVI 411 (540)
Q Consensus 339 ~gL~f~~~P~-f~~l~~~~vw~~A~~~~fF~l~~g~G~------~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~gl~i 411 (540)
|||.|+++|+ +++||.+++| +.+||.+.+..|. +++..+...|+.+..|++.+..+ +++.++.|++
T Consensus 320 pgL~Fi~~P~af~~mp~g~~~----~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~~R~~~~~~v--~~~~fllgl~- 392 (519)
T 2a65_A 320 FNLGFITLPAIFSQTAGGTFL----GFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWT--AAIVFFSAHL- 392 (519)
T ss_dssp SHHHHTHHHHHHTTSTTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH--HHHHHHHHHH-
T ss_pred CceeHHHHHHHHHhCCCccch----HHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCCcHHHHHHHH--HHHHHHHHHH-
Confidence 9999999999 9999999999 8899987666664 44455677777777777655443 6666666665
Q ss_pred HHHHHHhhhhc-CCCcccccccCccchhhhHHHH
Q psy1706 412 FSVIGFMAHEQ-RRPVEEVATSGPGLAFLAYPSA 444 (540)
Q Consensus 412 fs~lg~~~~~~-g~~~~~~~~~g~~l~Fv~~p~~ 444 (540)
++++. |.+..|...++..+.++++.|+
T Consensus 393 ------~~~~~~g~~~~D~~~~~~~l~~~~l~~~ 420 (519)
T 2a65_A 393 ------VMFLNKSLDEMDFWAGTIGVVFFGLTEL 420 (519)
T ss_dssp ------HHHBTTHHHHHHHHTTTHHHHHHHHHHH
T ss_pred ------HHcCCCCcchHHHHHhHHHHHHHHHHHH
Confidence 22332 3222233334555555555444
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=62.87 E-value=1.6e+02 Score=31.07 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=30.3
Q ss_pred HHHHH-HHHHHHHhhhhhH-HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Q psy1706 455 SCLFF-IMLLFLGLDSQFC-TVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLI 507 (540)
Q Consensus 455 ~~lfF-~~l~~~gl~s~i~-~~E~iv~~l~d~f~~~~~~~r~~~~~~~~~~~~l~ 507 (540)
..+.. +.+.+..+++.+. .+-.....+...+|+. .+|+..+.+++++..++
T Consensus 298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~--i~~~~~~~i~~vi~~~i 350 (501)
T 2jln_A 298 MAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRV--FTFKTGVIVSAVVGLLM 350 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTT--CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccc--cchhHHHHHHHHHHHHH
Confidence 44444 5566666777774 6777777777777732 25555555544444433
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.90 E-value=3.7e+02 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=22.4
Q ss_pred chhhhhhhhhccccccccchhhhhccceehhHHHHHH
Q psy1706 26 TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLT 62 (540)
Q Consensus 26 ~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~ 62 (540)
.....+|..+|.|.+-. |....+.|. .-++.|++.
T Consensus 15 ~~~l~ig~~iG~Gif~~-~~~~~~~G~-~~~~~~li~ 49 (445)
T 3l1l_A 15 VTLMVSGAIMGSGVFLL-PANLASTGG-IAIYGWLVT 49 (445)
T ss_dssp HHHHHHHHHCSSHHHHH-HHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhHHhhhHHhh-HHHHHHhhh-HHHHHHHHH
Confidence 35668899999988764 766555444 334555543
No 5
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=33.13 E-value=3.9e+02 Score=28.56 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh---cCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHH
Q psy1706 402 STSMFAGFVIFSVIGFMAHE---QRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCT 473 (540)
Q Consensus 402 ~~s~l~gl~ifs~lg~~~~~---~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~ 473 (540)
++-.+.++.-|++.|-.+-+ .|.+. ..+.++ -.++.+.+.++|.+.+.+.++-++++..=+||.=+.
T Consensus 363 ~vPsl~~~~WfsvfGg~ai~~~~~g~~~--~~~~~~---~~alf~~l~~lP~~~i~~~l~iili~~FfvTSaDS~ 432 (539)
T 4ain_A 363 LVPAGVSTVWFSIFGGTAIVFEQNGESI--WGDGAA---EEQLFGLLHALPGGQIMGIIAMILLGTFFITSADSA 432 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CTTSCH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhccch--hhcCCH---hhHHHHHHHHCchHHHHHHHHHHHHHHHHHHccchH
Confidence 34445556667776654321 22221 111222 246778899999999998888777766555554443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=30.33 E-value=4.6e+02 Score=26.77 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=26.9
Q ss_pred chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHH--HHHHHHHH-HHhcCCCccccc
Q psy1706 26 TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMP--MFFMELAL-GQMLSVGGLGVF 89 (540)
Q Consensus 26 ~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~P--ll~lE~~l-Gq~~~~g~~~~~ 89 (540)
.+.-.+|..+|..++.. ..++|-+-++.+++..++..+| +.+.|++- +.+- .|..-.|
T Consensus 18 ~~~l~~~~~ig~~~~~~-----~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 18 FFAITASMVMAVYEYPT-----FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp HHHHTGGGGCCGGGHHH-----HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred HHHHHHHHHHhhchhHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 34556666666544432 3455555555444444444433 34456553 1222 4544455
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=27.58 E-value=4.7e+02 Score=26.06 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=23.6
Q ss_pred chhhhhhhhhccccccccchhhhhccceehhHHHHHHH
Q psy1706 26 TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTA 63 (540)
Q Consensus 26 ~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l 63 (540)
...-.+|..+|.|.+-..+. ..+++|..-.+.|++..
T Consensus 13 ~~~l~~g~~iG~gi~~~~~~-~~~~~G~~~~~~~li~~ 49 (444)
T 3gia_A 13 AVSMAVGVMIGASIFSIFGV-GAKIAGRNLPETFILSG 49 (444)
T ss_dssp HHHHHHHHHHHHHTTTSHHH-HHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhCcHHHHHHHHHH
Confidence 35667788899887665554 45566656566665543
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=22.45 E-value=7.1e+02 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh---cC-CCccccc-ccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHH
Q psy1706 402 STSMFAGFVIFSVIGFMAHE---QR-RPVEEVA-TSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCT 473 (540)
Q Consensus 402 ~~s~l~gl~ifs~lg~~~~~---~g-~~~~~~~-~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~ 473 (540)
++-.+.++.-|++.|-.+-+ .| .++.+.. ++++ -.++.+.+.++|.+.+.+.++-++++..=+||+=+.
T Consensus 358 ~vPs~~~~~WfsvfGg~ai~~~~~g~~~l~~~~~~~~~---~~alf~~l~~lP~~~i~~~l~iil~~~FfvTSaDS~ 431 (509)
T 2wsw_A 358 SGLTAGTWLIWTILGGNTLQLIDQNILNIPQLIDQYGV---PRAIIETWAALPLSTATMWGFFILCFIATVTLINAC 431 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHCH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHhCCccHHHHHhccCh---hhHHHHHHHHCChHHHHHHHHHHHHHHHHHHcccHH
Confidence 34445556667777664421 12 2222211 1222 245677789999999988888777766655555543
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=13.42 E-value=45 Score=19.19 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=6.7
Q ss_pred ccccchhhh
Q psy1706 40 VWRFPYLCY 48 (540)
Q Consensus 40 iwrFP~l~~ 48 (540)
=||||..-.
T Consensus 2 rwrfparpg 10 (21)
T 3u85_B 2 RWRFPARPG 10 (26)
T ss_pred ccccccCCC
Confidence 399997755
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.81 E-value=1.5e+03 Score=23.36 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=32.9
Q ss_pred hHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q psy1706 440 AYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEW 485 (540)
Q Consensus 440 ~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f 485 (540)
++|.....+| .....++...++.+..+|.-+.+...-+.+.+.+
T Consensus 309 ~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Di 352 (530)
T 3dh4_A 309 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDI 352 (530)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 4666665565 6677788888888889999998888887765443
Done!