RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1706
(540 letters)
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 480 bits (1239), Expect = e-165
Identities = 181/276 (65%), Positives = 223/276 (80%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+RRVL I+DGI ++G +RWELA LLL W+ICYFCIWKGVK TGKVVYFTA FPY +LI
Sbjct: 161 ERRVLGISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLII 220
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LLIRG+TLPGA DGI +Y+ P+ +KL + +VWIDA TQIFFSYG+GLG+L ALGSYNKFN
Sbjct: 221 LLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFN 280
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN YKD++++C +NS TS FAGF IFS++GFMA EQ P+ EVA SGPGLAF+AYP AV
Sbjct: 281 NNCYKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVS 340
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
LP +W+ LFFIMLL LGLDSQF VEGF+TA+VD +P++LR R+E+FV +VC+V
Sbjct: 341 LLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVC 400
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
FLIG + +GG+Y+FQ+FD YA SG LL+L FFE
Sbjct: 401 FLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFE 436
Score = 359 bits (924), Expect = e-118
Identities = 139/234 (59%), Positives = 170/234 (72%), Gaps = 15/234 (6%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAP 93
AIGLGNVWRFPYLCYKNGGGAFL+PY + +L G+P+FF+E+ALGQ S GG+ +KI P
Sbjct: 18 AIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLEVALGQYTSQGGITAWKICP 77
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+FKG+GYA+AV+ W+NIYYIVILAWA+FY F S +++PW C+N+WNT+ CV Y
Sbjct: 78 LFKGIGYASAVIVFWLNIYYIVILAWALFYLFNSFTSELPWTTCDNWWNTECCVETYSNN 137
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
L + + T PV+EFWERRVL I+DGI ++G +RWELA
Sbjct: 138 NLSNLTKNCSNNTN---------------STSPVEEFWERRVLGISDGIEDIGSIRWELA 182
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LLL W+ICYFCIWKGVK TGKVVYFTA FPY +LI LLIRG+TLPGA DGI
Sbjct: 183 LCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLIILLIRGVTLPGASDGIY 236
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 407 bits (1048), Expect = e-137
Identities = 174/273 (63%), Positives = 221/273 (80%), Gaps = 1/273 (0%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R+VL+++DGI +LGG+RW L LL+ WV+ YFCIWKGVK +GKVVYFTA FPY +L+ L
Sbjct: 143 RKVLKLSDGIEDLGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVL 202
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
L+RG+TLPGA DGI +Y+ P++SKL + +VWIDA TQIFFS G+G G L+A SYNKF+N
Sbjct: 203 LVRGVTLPGAADGIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHN 262
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQ 447
N Y+DA++V INS+TS AGFVIFSV+GFMA EQ P+ EVA SGPGLAF+AYP AV
Sbjct: 263 NCYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPEAVTM 322
Query: 448 LPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLI 507
LP +P WS LFF+ML+ LGLDSQF VEG ITA+VDE+P LLR+R+ELF L+VCV+SFLI
Sbjct: 323 LPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRRELFTLIVCVISFLI 382
Query: 508 GFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
G + + +GG+Y+F +FD YA + F LLF++FFE
Sbjct: 383 GLILVTEGGIYVFTLFDYYA-ASFGLLFVVFFE 414
Score = 293 bits (753), Expect = 2e-93
Identities = 127/235 (54%), Positives = 161/235 (68%), Gaps = 36/235 (15%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+GLGNVWRFPYLCYKNGGGAFL+PYL+ I AG+P+FF+ELALGQ G +GV+ KI
Sbjct: 18 AVGLGNVWRFPYLCYKNGGGAFLIPYLIFLITAGIPLFFLELALGQYTREGAIGVWRKIC 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P+FKG+GYA+ V+ ++ IYY VI+AWA++Y F S T++PW +CNN WNT C
Sbjct: 78 PLFKGIGYASMVIVFYIGIYYNVIIAWALYYLFSSFTTELPWASCNNSWNTPRCEK---- 133
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
T PV+EFWER+VL+++DGI +LGG+RW L
Sbjct: 134 -------------------------------TSPVEEFWERKVLKLSDGIEDLGGLRWPL 162
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LL+ WV+ YFCIWKGVK +GKVVYFTA FPY +L+ LL+RG+TLPGA DGI
Sbjct: 163 TLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLLVRGVTLPGAADGID 217
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 401 bits (1032), Expect = e-134
Identities = 184/274 (67%), Positives = 228/274 (83%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+R + Q+TDG+ G +RW LA TL + WV+ YFCIWKGV WTGKVVYF+A +PY +L
Sbjct: 193 ERNMHQMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFI 252
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
L RG+TLPGA +GI +YI PNFSKL +SEVW+DA TQIFFSYGLGLG+L+ALGSYN F+
Sbjct: 253 LFFRGVTLPGAKEGILFYITPNFSKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNPFH 312
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NNVY+D+++VC INS TSMFAGFVIFS++GFMAH +RP+ +VA SGPGLAFLAYP AV
Sbjct: 313 NNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVT 372
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFL 506
QLP +P+W+ LFF MLL LG+DSQFCTVEGFITA+VDE+P LLR R+E+F+ VVC+VS+L
Sbjct: 373 QLPISPLWAVLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNRREIFIAVVCIVSYL 432
Query: 507 IGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
IG I QGG+Y+F++FD Y+ SG SLLFL+FFE
Sbjct: 433 IGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFE 466
Score = 279 bits (715), Expect = 9e-87
Identities = 128/233 (54%), Positives = 161/233 (69%), Gaps = 25/233 (10%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAP 93
AIGLGNVWRFPYLC KNGGGAFL+PY LT I AG+P+F +E +LGQ S+GGLGV+K+AP
Sbjct: 60 AIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAP 119
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+FKGVG AAAV+S W+NIYYIVI+AWA++Y + S T +PW++C+N WNT C + Y
Sbjct: 120 MFKGVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWKSCDNPWNTDRCFSNYSM- 178
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
+T +T V EFWER + Q+TDG+ G +RW LA
Sbjct: 179 ------------------------ANTTNMTSAVVEFWERNMHQMTDGLEKPGQIRWPLA 214
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
TL + WV+ YFCIWKGV WTGKVVYF+A +PY +L L RG+TLPGA +GI
Sbjct: 215 ITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRGVTLPGAKEGI 267
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 365 bits (940), Expect = e-122
Identities = 147/258 (56%), Positives = 186/258 (72%), Gaps = 2/258 (0%)
Query: 283 VRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 342
+ WELA LLL W++ Y CI+KGVK +GKVVYFTA FPY +L LLIRG+TLPGA DGI
Sbjct: 113 INWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGIL 172
Query: 343 YYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSS 402
Y++ P++SKL + +VW A TQIFFS +G G L+ SYNKF+NN+Y+DA++V +N+
Sbjct: 173 YFLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSILNTL 232
Query: 403 TSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIML 462
TS+ AGFVIFSV+GF+AHE PV +V GPGLAF+ YP A+ ++P +WS LFF ML
Sbjct: 233 TSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSVLFFFML 292
Query: 463 LFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQI 522
LGLDSQF VE +TA+VDE+P LR+RK L L VCVV FL+G + QGG+YI +
Sbjct: 293 FLLGLDSQFAIVETIVTAIVDEFP-KLRKRKWLVTLGVCVVGFLLGLPYVTQGGIYILDL 351
Query: 523 FDSYAVSGFSLLFLMFFE 540
D YA FSLL L FE
Sbjct: 352 LDYYAA-TFSLLVLALFE 368
Score = 144 bits (367), Expect = 3e-38
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KI 91
A+GLGNVWRFPYL Y+NGGGAFL+PYL+ +L G+P+FF+ELALGQ S G +G F +I
Sbjct: 16 YAVGLGNVWRFPYLAYENGGGAFLIPYLIMLLLVGIPLFFLELALGQYTSRGPVGAFWRI 75
Query: 92 APIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMS 127
P+FKGVGYA V+S + IYY VI+AW ++Y F S
Sbjct: 76 CPLFKGVGYAQVVISFLVAIYYNVIIAWTLYYLFAS 111
Score = 101 bits (255), Expect = 3e-23
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 208 VRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
+ WELA LLL W++ Y CI+KGVK +GKVVYFTA FPY +L LLIRG+TLPGA DGI
Sbjct: 113 INWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGIL 172
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 367 bits (944), Expect = e-121
Identities = 169/276 (61%), Positives = 217/276 (78%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+RRVL+I+DGI ++G +RWELA LLL WVICYFCIWKGVK TGKVVYFTA FPY +L+
Sbjct: 157 ERRVLRISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVV 216
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LLIRG+TLPGA GI++Y+ P+ S+L + +VW+DA TQIFFSY + LG L ALGSYNK+N
Sbjct: 217 LLIRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKYN 276
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN Y+D + +C +NS TS AGF IFS++GFMA+EQ P+ EVA SGPGLAF+AYP AV
Sbjct: 277 NNCYRDCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVS 336
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
+P +P+W+C FFIM++ LGLDSQF VE +TAMVD +P + R+ R+EL +L V +VS
Sbjct: 337 MMPFSPLWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNRRELLILFVSIVS 396
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
FL+G + + +GGMY+FQ+FD YA SG LLF+ FE
Sbjct: 397 FLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFE 432
Score = 274 bits (703), Expect = 1e-85
Identities = 132/234 (56%), Positives = 164/234 (70%), Gaps = 21/234 (8%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAP 93
IGLGNVWRFPYLCYKNGGGAF +PYL+ G+P+FF+E ALGQ S GG+ + KI P
Sbjct: 19 IGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTCWRKICP 78
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+F+G+GYA+ V+ +N YYI++LAWA+FY F S ++PW +CN+ WNT+NCV +R
Sbjct: 79 LFEGIGYASQVIVALLNFYYIIVLAWALFYLFNSFTWELPWSSCNHTWNTENCVEFQKRN 138
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
NV+ T PV EFWERRVL+I+DGI ++G +RWELA
Sbjct: 139 Y--------------------SVNVTLENATSPVIEFWERRVLRISDGIEHIGSLRWELA 178
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LLL WVICYFCIWKGVK TGKVVYFTA FPY +L+ LLIRG+TLPGA GI+
Sbjct: 179 LCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGASLGIQ 232
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 365 bits (938), Expect = e-120
Identities = 149/275 (54%), Positives = 203/275 (73%), Gaps = 3/275 (1%)
Query: 268 RRVLQI--TDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLI 325
R+VL++ ++GI++LGG +W+LA L V++I YF +WKGVK +GKVV+ TA PY +L
Sbjct: 159 RKVLELQKSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLS 218
Query: 326 ALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKF 385
LLIRG+TLPGA DGIKYY+ PN+SKL + +VWIDA TQIFFS G G G L+AL SYNKF
Sbjct: 219 ILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKF 278
Query: 386 NNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAV 445
+NN Y+DA++ +IN TS F+GFVIFSV+G+MAH+Q +E VAT GPGL F+ YP A+
Sbjct: 279 HNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFIVYPEAI 338
Query: 446 LQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSF 505
LPG+ W+ +FF+ML+ LGLDS F +E IT + DE+P +L +R+ELFVL V ++ F
Sbjct: 339 ATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKRRELFVLGVVIICF 398
Query: 506 LIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
L+ + GG+Y+ + D YA G S+LF++F E
Sbjct: 399 LLALPTVTYGGIYVVTLLDRYAA-GTSILFVVFLE 432
Score = 276 bits (707), Expect = 4e-86
Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 22/237 (9%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+ LGNVWRFPY+CYKNGGGAFL+PYLL I G+P+F+MELALGQ G + V+ KI
Sbjct: 18 AVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELALGQYHRSGCITVWRKIC 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
PIFKGVGYA +++ ++ YY I+AWA++Y F S +++PW +CNN WNT NC + R
Sbjct: 78 PIFKGVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNR 137
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQI--TDGINNLGGVRW 210
N T TL+S P +EF+ER+VL++ ++GI++LGG +W
Sbjct: 138 NNSSSSNGTWTLHS-------------------PAEEFFERKVLELQKSEGIDDLGGPKW 178
Query: 211 ELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
+LA L V++I YF +WKGVK +GKVV+ TA PY +L LLIRG+TLPGA DGIK
Sbjct: 179 QLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLSILLIRGLTLPGASDGIK 235
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 354 bits (910), Expect = e-116
Identities = 161/276 (58%), Positives = 212/276 (76%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+R VL ++ GI ++G ++W+LA LLLVWVIC+FCIWKGVK TGKVVYFTA FP+ +LI
Sbjct: 160 ERNVLSLSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLIV 219
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LLIRG+TLPGA +GIK+Y+ P+ ++LG+ +VWIDA TQIFFSY + LG + +LGSYNK+
Sbjct: 220 LLIRGVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYK 279
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
N Y+D ML+ +NS TS +GF IFSV+GFMA EQ + +VA SGPGLAF+AYP AV
Sbjct: 280 YNCYRDCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVT 339
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
+P W+ LFFIMLL LGLDSQF VEG IT++VD +P LR+ R+E+F+ +VC +S
Sbjct: 340 MMPLPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCFIS 399
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+L+G + +GGMY+FQ+FD YA SG LL++ FFE
Sbjct: 400 YLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFE 435
Score = 275 bits (704), Expect = 1e-85
Identities = 130/234 (55%), Positives = 166/234 (70%), Gaps = 18/234 (7%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAP 93
+GLGNVWRFPYLCYKNGGGAFL+PY + G+P+FF+E+ALGQ S GG+ + K+ P
Sbjct: 19 VGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVALGQYTSEGGITCWEKLCP 78
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
IF G+GYA+ V+ +NIYYIVILAW ++Y F S ++++PW +CN WNT NCV R
Sbjct: 79 IFTGIGYASIVIVSLLNIYYIVILAWGLYYLFQSFQSELPWAHCNQSWNTPNCVEDTLRK 138
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
+K ++ IN N T PV EFWER VL ++ GI ++G ++W+LA
Sbjct: 139 ------------NKTLWASINATN-----FTSPVTEFWERNVLSLSSGIEHVGTIKWDLA 181
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LLLVWVIC+FCIWKGVK TGKVVYFTA FP+ +LI LLIRG+TLPGA +GIK
Sbjct: 182 LCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLIVLLIRGVTLPGAAEGIK 235
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 351 bits (903), Expect = e-114
Identities = 161/276 (58%), Positives = 210/276 (76%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+ +VL+++ G+ G + WE+ LL WVI YFC+WKGVK TGK+VYFTALFPY +LI
Sbjct: 172 ENKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYVVLIV 231
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LL+ G+TLPGA+DGI YY+ P++SKLGE++VWIDA TQIFFSY +GLG L ALGSYN+F+
Sbjct: 232 LLVHGVTLPGALDGIIYYLKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSYNRFH 291
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN Y+DA ++ INS TS FAGFV+FSV+GFMA EQ + +VA SGPGLAF+AYP AV
Sbjct: 292 NNCYRDAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVT 351
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWP--HLLRRRKELFVLVVCVVS 504
+P AP+W+ LFF MLL LGLDSQF VEGFIT ++D +P + R R+E+ + C++
Sbjct: 352 LMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLRREITAALCCLLC 411
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
FLI + QGGMY+FQ+FD Y+ SG +LL+ F+E
Sbjct: 412 FLIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWE 447
Score = 269 bits (688), Expect = 8e-83
Identities = 116/234 (49%), Positives = 155/234 (66%), Gaps = 4/234 (1%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA 92
A+GLGNVWRFPYLCYKNGGG FL+PYLL + G+P+FF+E+ALGQ + GG+ + IA
Sbjct: 17 FAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIALGQFMKQGGINAWNIA 76
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P+FKG+GYA+ V+ + N YYI+IL W ++Y S +PW C + WNT+NC +
Sbjct: 77 PLFKGLGYASMVIVFFCNTYYIMILVWGLYYLVHSFTNTLPWATCGHPWNTENCTEIFRH 136
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
C N + + ++N PV EFWE +VL+++ G+ G + WE+
Sbjct: 137 E--DCANGSLANSWSQT--FLNLSCDELANKRSPVIEFWENKVLRLSGGLEEPGALNWEM 192
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
LL WVI YFC+WKGVK TGK+VYFTALFPY +LI LL+ G+TLPGA+DGI
Sbjct: 193 ILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYVVLIVLLVHGVTLPGALDGI 246
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 347 bits (891), Expect = e-113
Identities = 165/276 (59%), Positives = 214/276 (77%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
++RVL +TDGI+ LG VRWELA LLL W+ICYFCIWKGVK TGKVVYFTA FPY +L+
Sbjct: 159 EKRVLGLTDGIHKLGTVRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVI 218
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LL+RG+TLPGA +GI +Y+ P+ S+L + +VW+DA TQI FSY + G L ALGSYNK+
Sbjct: 219 LLVRGVTLPGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKYT 278
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN Y+D +++C +NS+TS AGF IFSV+GFMA EQ P+ EVA SGPGLAF+AYP+AV
Sbjct: 279 NNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAFIAYPTAVT 338
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
+P + +WSCLFF+ML+FLGLDSQF VE +TA +D +P + R+ R+EL +L + V+
Sbjct: 339 MMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGRRELLILAIAVIC 398
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+L+G + + +GGMYIFQ+FD YA SG LLFL FE
Sbjct: 399 YLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFE 434
Score = 271 bits (694), Expect = 2e-84
Identities = 131/233 (56%), Positives = 161/233 (69%), Gaps = 20/233 (8%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAP 93
IGLGNVWRFPYLCYKNGGGAFL+PYL+ G+P+FF+E ALGQ S GG+ + KI P
Sbjct: 20 IGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLETALGQYTSQGGVTAWRKICP 79
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
IF+G+GYA+ V+ ++N+YYI+IL+WA+FY F S + +PW CNN WN+ CV+
Sbjct: 80 IFEGIGYASQVIESYLNVYYIIILSWALFYLFSSFTSVLPWATCNNPWNSDLCVDFLNHS 139
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
G T T PV EFWE+RVL +TDGI+ LG VRWELA
Sbjct: 140 GA----DNRTPPEN---------------ATSPVMEFWEKRVLGLTDGIHKLGTVRWELA 180
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
LLL W+ICYFCIWKGVK TGKVVYFTA FPY +L+ LL+RG+TLPGA +GI
Sbjct: 181 LCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVILLVRGVTLPGAAEGI 233
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 341 bits (876), Expect = e-111
Identities = 167/276 (60%), Positives = 214/276 (77%), Gaps = 2/276 (0%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+RRVL I+DGI ++G +RWELA LL W ICYFCIWKG K TGKVVY TA FPY +L+
Sbjct: 160 ERRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLI 219
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
LLIRG+TLPGA +GIK+Y+ P+ S+L + +VW+DA TQIFFSY + LG L ALGSYN +N
Sbjct: 220 LLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYN 279
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN Y+D +++C +NS TS AGF IFSV+GFMA+EQ P+ EVA SGPGLAF+AYP AV
Sbjct: 280 NNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPKAVT 339
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
+P +P+W+ LFF+ML+FLGLDSQF VE +TA+VD +P + RR R+EL +L + +VS
Sbjct: 340 MMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYRRELLILALSIVS 399
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+ +G V + +GGMYIFQ+FDSYA SG LLF+ FE
Sbjct: 400 YFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFE 435
Score = 255 bits (653), Expect = 2e-78
Identities = 130/234 (55%), Positives = 164/234 (70%), Gaps = 19/234 (8%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIAP 93
IGLGNVWRFPYLCYKNGGGAFL+PY++ I G+P+FF+E ALGQ S GG+ + K+ P
Sbjct: 20 IGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRKVCP 79
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+F+G+GYA V+ +N+YYI+ILAWA+FY F T++PW C + WNT+NCV
Sbjct: 80 LFEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTTELPWATCGHEWNTENCVE----- 134
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
+ N++ N +VS + T PV EFWERRVL I+DGI ++G +RWELA
Sbjct: 135 -FQKLNSS------------NCSHVSLQNATSPVMEFWERRVLAISDGIEHIGNLRWELA 181
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LL W ICYFCIWKG K TGKVVY TA FPY +L+ LLIRG+TLPGA +GIK
Sbjct: 182 LCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPGASEGIK 235
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 334 bits (859), Expect = e-109
Identities = 149/275 (54%), Positives = 200/275 (72%), Gaps = 3/275 (1%)
Query: 267 KRRVLQI--TDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLL 324
RRVL I + GI + G VRWELA LLL WVI +FC++KGVK +GKVVYFTA FPY +L
Sbjct: 158 NRRVLGIQGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIIL 217
Query: 325 IALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNK 384
I LL+RG+TL GA+ GI++Y+ P+F +L S+VW DA +QIF+S G+G G L+ + SYNK
Sbjct: 218 IVLLVRGVTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNK 277
Query: 385 FNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSA 444
FNNN+Y+D +++ N TS+FAGF IFSV+G MAHE PV++VA +GPGLAF+AYP A
Sbjct: 278 FNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAFVAYPEA 337
Query: 445 VLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVS 504
+ LP +P WS LFF MLL LGLDSQF +E +TA+ DE+P+LLR+ K F+ ++CV
Sbjct: 338 LTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKYKTWFLGLICVGM 397
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFF 539
+L+G + + GGMY + D Y+ + F L+ L F
Sbjct: 398 YLLGLLLVTDGGMYWLTLMDWYS-ASFGLMVLALF 431
Score = 253 bits (648), Expect = 2e-77
Identities = 118/234 (50%), Positives = 156/234 (66%), Gaps = 20/234 (8%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPI 94
+GLGNVWRFPYLCY+NGGGAFL+PY + G+P+FFMEL+LGQ S+G L V+K PI
Sbjct: 19 VGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELSLGQYGSLGPLTVWKCCPI 78
Query: 95 FKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVG 154
FKG+GY ++S + IYY VI+AW +FY F S + +PW +C N+WNT++C+ +
Sbjct: 79 FKGIGYGMLLVSGLVCIYYNVIIAWTLFYLFASFTSVLPWEHCGNWWNTESCLEHRVKDN 138
Query: 155 LKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQI--TDGINNLGGVRWEL 212
+ N++ V P +E+W RRVL I + GI + G VRWEL
Sbjct: 139 MGA----------------LPVNLTRTV--SPSEEYWNRRVLGIQGSSGIGDPGEVRWEL 180
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
A LLL WVI +FC++KGVK +GKVVYFTA FPY +LI LL+RG+TL GA+ GI
Sbjct: 181 ALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIILIVLLVRGVTLEGALKGI 234
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 314 bits (806), Expect = e-100
Identities = 142/275 (51%), Positives = 195/275 (70%), Gaps = 4/275 (1%)
Query: 268 RRVLQIT--DGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLI 325
R VL++ G+ +LG +RW++ L V++ICYF +WKG+ +GKVV+FTALFPY +L
Sbjct: 173 RGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTALFPYVVLF 232
Query: 326 ALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKF 385
LLIRG+TLPG+ +GI+YY+ PNF L +EVW+DA TQ+FFS G G G L+A SYNKF
Sbjct: 233 ILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPGFGVLLAYASYNKF 292
Query: 386 NNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAV 445
+NNVY+DA++ +IN TS +GFVIFSV+G+MA +P+E+VAT GPGL F+ YP A+
Sbjct: 293 HNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFVVYPEAL 352
Query: 446 LQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSF 505
+PG+ WS LFF+ML+ LGLDS F E ITA+ DE+P +++R +ELFV + F
Sbjct: 353 STMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFP-IIKRHRELFVGCLFAFYF 411
Query: 506 LIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+IG QGG+Y F + D YA G+S+L + FE
Sbjct: 412 VIGLAMCTQGGIYFFHLLDRYAA-GYSILIAVLFE 445
Score = 235 bits (600), Expect = 2e-70
Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 12/238 (5%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+ L NVWRFPYLCYKNGGGAFL+PY + ++ G+P+F+MELALGQ G + + +I
Sbjct: 18 AVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELALGQYYRKGAITSWGRIC 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P+FKG+GYA +++ +++ +Y VI+AW+++YFF S ++PW +CNN WNT NC P+
Sbjct: 78 PLFKGIGYAVVLIAFYVDFFYNVIIAWSLYYFFASFTFNLPWTSCNNSWNTPNCYEPH-- 135
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRV--LTDPVKEFWERRVLQIT--DGINNLGGV 208
W+ T+ + + N+S T E++ER VL++ G+ +LG +
Sbjct: 136 -----WSEDGTVPCRSANQSFSATNISAAEENFTSAALEYFERGVLELHVSRGVTDLGNI 190
Query: 209 RWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
RW++ L V++ICYF +WKG+ +GKVV+FTALFPY +L LLIRG+TLPG+ +GI
Sbjct: 191 RWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTALFPYVVLFILLIRGVTLPGSQNGI 248
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 299 bits (766), Expect = 3e-94
Identities = 137/273 (50%), Positives = 186/273 (68%), Gaps = 3/273 (1%)
Query: 270 VLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLI 329
LQ + G++ G + W LA LLL W+I ++KG+K +GKVVYFTALFPY +L+ LL+
Sbjct: 182 ALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGKVVYFTALFPYVVLLILLV 241
Query: 330 RGITLPGAIDGIKYYI--IPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
RG TL GA DGI+YYI N +KL E+EVW DA TQIF+S + G LVAL SYNKF+N
Sbjct: 242 RGATLEGAKDGIEYYIGSQSNLTKLMEAEVWKDAATQIFYSLSVAWGGLVALSSYNKFHN 301
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQ 447
N + DA++VC N TS+FAGF IFSV+G MAH ++PV EV SG LAF+AYP A+ +
Sbjct: 302 NCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAFIAYPEALAK 361
Query: 448 LPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLI 507
LP +P+WS LFF MLL LGLDSQF +E T + D +P ++++++ L VC++ FL+
Sbjct: 362 LPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMKKKRIPITLGVCIILFLL 421
Query: 508 GFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
G C+ Q G+Y + D + +G+ +LF E
Sbjct: 422 GLPCVTQAGIYWVNLIDHF-CAGWGILFAAVLE 453
Score = 226 bits (578), Expect = 1e-66
Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAP 93
A+GLGNVWRFPYL YKNGGGAFL+PY + LAG+P+FF+E +LGQ S+G + V++ P
Sbjct: 18 AVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFLECSLGQFASLGPISVWRAVP 77
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+ +GVG ++S +++IYY VI+A++++Y F S ++ +PW +C++ W +NC
Sbjct: 78 LLQGVGITMVLVSTFVSIYYNVIIAYSLYYMFASFQSPLPWSDCSS-WADENCSTSPIT- 135
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVS-------TRVLTDPVKEFWERRVLQITDGINNLG 206
C + + E +++ N++ + P +++W++ LQ + G++ G
Sbjct: 136 --HCNVSLANNGIHENKSWVDSNNLTCINISIIYQPGQLPSEQYWDKVALQRSSGMDETG 193
Query: 207 GVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
+ W LA LLL W+I ++KG+K +GKVVYFTALFPY +L+ LL+RG TL GA DGI
Sbjct: 194 PIVWYLALCLLLAWIIVGAALFKGIKSSGKVVYFTALFPYVVLLILLVRGATLEGAKDGI 253
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 299 bits (766), Expect = 3e-94
Identities = 150/280 (53%), Positives = 197/280 (70%), Gaps = 1/280 (0%)
Query: 261 GAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFP 320
G+ + K VL+I+ GI G +RW LA L L WVI Y + KG+K +GKVVYFTA FP
Sbjct: 180 GSEEYFKYNVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKSSGKVVYFTATFP 239
Query: 321 YFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALG 380
Y +L+ LLIRG+TLPGA GI Y+I P + KL ++ VW DA TQIFFS G L+ L
Sbjct: 240 YVVLVILLIRGVTLPGAGAGIWYFITPKWEKLNDATVWKDAATQIFFSLSAAWGGLITLS 299
Query: 381 SYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLA 440
SYNKF+NN Y+D ++V NS+TS+FAGFVIFSVIGFMAHE + +E VA GPG+AF+
Sbjct: 300 SYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAFVV 359
Query: 441 YPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVV 500
YP A+ +LP +P W+ +FF+MLL LGLD+ F T+E +T++ DE+P LR K LF LV
Sbjct: 360 YPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKYLRTHKPLFTLVC 419
Query: 501 CVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
C+ F++GF I QGGMY+ Q+ D+YA S +SL+ + FE
Sbjct: 420 CISFFIMGFPMITQGGMYMLQLVDTYAAS-YSLVIIAIFE 458
Score = 210 bits (537), Expect = 7e-61
Identities = 107/243 (44%), Positives = 152/243 (62%), Gaps = 10/243 (4%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAP 93
A+GLGNVWRFPYL ++NGGGAFL+PYL+ LAG+P+FF+E++LGQ S G + V+K P
Sbjct: 18 AVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGIPIFFLEVSLGQFASQGPVSVWKAIP 77
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNP---- 149
+G G A ++S + IYY +I+ + +FY F SL +PW +CNN WNT C +
Sbjct: 78 ALQGCGIAMLIISVLIAIYYNIIMCYTLFYLFASLVEVLPWASCNNPWNTPECKDKDKLL 137
Query: 150 ------YERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGIN 203
+ ++ N+T + + +N +V + +E+++ VL+I+ GI
Sbjct: 138 LDSCIISDHPKIQIKNSTFCMTAYPNLTMVNFTSVGNKTFVSGSEEYFKYNVLKISAGIE 197
Query: 204 NLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAI 263
G +RW LA L L WVI Y + KG+K +GKVVYFTA FPY +L+ LLIRG+TLPGA
Sbjct: 198 YPGEIRWPLALCLFLAWVIVYASLAKGIKSSGKVVYFTATFPYVVLVILLIRGVTLPGAG 257
Query: 264 DGI 266
GI
Sbjct: 258 AGI 260
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 295 bits (756), Expect = 2e-93
Identities = 132/276 (47%), Positives = 189/276 (68%), Gaps = 4/276 (1%)
Query: 268 RRVLQI--TDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLI 325
R VLQ+ + G+ +LGG+ W+LA L L++ I YF IWKGVK +GKVV+ TA FPY +L
Sbjct: 156 RHVLQVHRSTGLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLF 215
Query: 326 ALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKF 385
LLIRG TLPGA G+ YY+ P + KL E+ VW+DA QIFFS G G G L+A SYNKF
Sbjct: 216 ILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKF 275
Query: 386 NNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATS-GPGLAFLAYPSA 444
+NN Y+DA++ +N TS +GFVIF+V+G+MA + V EVAT GP L F+ Y A
Sbjct: 276 HNNCYQDALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEA 335
Query: 445 VLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVS 504
+ +PG+ ++ +FF+M++ LGLDS F +EG ITA++DE+PH++ +R+E+FVL + +V
Sbjct: 336 IANMPGSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKRREIFVLGLVIVC 395
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
FL + GG Y+ ++ + YA G ++L ++ E
Sbjct: 396 FLGSLATLTFGGAYVVKLLEEYAT-GPAVLTVVLLE 430
Score = 241 bits (617), Expect = 5e-73
Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 27/237 (11%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+ LGNVWRFPY+CY+NGGGAFL+PY L AI G+P+F+MELALGQ G + ++ KI
Sbjct: 18 AVDLGNVWRFPYICYQNGGGAFLIPYTLMAIFGGIPLFYMELALGQYHRTGCISIWRKIC 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
PIFKG+GYA +++ ++ YY I+AWA++Y S T +PW +C+N WNT NC N
Sbjct: 78 PIFKGIGYAICIIALYVASYYNTIIAWALYYLISSFATTLPWTSCDNSWNTGNCTN---- 133
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVS-TRVLTDPVKEFWERRVLQI--TDGINNLGGVR 209
Y + N++ T T P +EF+ R VLQ+ + G+ +LGG+
Sbjct: 134 -------------------YFAKDNITWTLHSTSPAEEFYTRHVLQVHRSTGLGDLGGIS 174
Query: 210 WELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
W+LA L L++ I YF IWKGVK +GKVV+ TA FPY +L LLIRG TLPGA G+
Sbjct: 175 WQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLFILLIRGATLPGAWRGV 231
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 279 bits (715), Expect = 3e-87
Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
Query: 262 AIDGIKRRVLQITD--GINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALF 319
A + +R VL + + GI++LG RW+L + L++V V+ YF +WKGVK +GKVV+ TA
Sbjct: 154 AAEYFERGVLHLHESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGVKTSGKVVWITATM 213
Query: 320 PYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVAL 379
PY +L ALL+RG+TLPGAIDGIK Y+ +F +L E+ VWIDA TQI FS G+G G L+A
Sbjct: 214 PYVVLTALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAF 273
Query: 380 GSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFL 439
SYNKF NN Y+DA++ +INS TS F+GFV+FS +G+MA + P+ +VA GPGL F+
Sbjct: 274 SSYNKFTNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFI 333
Query: 440 AYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLV 499
YP A+ LP + +W+ +FFIMLL LG+DS +E IT ++DE+ L R +ELF L
Sbjct: 334 IYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEF-KFLHRHRELFTLF 392
Query: 500 VCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+ + +FLI C+ GG+Y+F + D +A +G S+LF + E
Sbjct: 393 IVLSTFLISLFCVTNGGIYVFTLLDHFA-AGTSILFGVLIE 432
Score = 239 bits (610), Expect = 7e-72
Identities = 117/237 (49%), Positives = 156/237 (65%), Gaps = 19/237 (8%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA 92
A+ L NVWRFPYLCYKNGGGAFLVPYL ++AGMP+F+MELALGQ G GV+KI
Sbjct: 17 FAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELALGQFNREGAAGVWKIC 76
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
PIFKGVG+ ++S ++ +Y VI+AWA+FY F S ++PW +CNN WN+ NC + +
Sbjct: 77 PIFKGVGFTVILISLYVGFFYNVIIAWALFYLFSSFTGELPWIHCNNSWNSPNCSDAHPG 136
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITD--GINNLGGVRW 210
+ + Y T P E++ER VL + + GI++LG RW
Sbjct: 137 DSSGDSSGLNDTYK-----------------TTPAAEYFERGVLHLHESHGIHDLGPPRW 179
Query: 211 ELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
+L + L++V V+ YF +WKGVK +GKVV+ TA PY +L ALL+RG+TLPGAIDGIK
Sbjct: 180 QLTSCLVVVIVLLYFSLWKGVKTSGKVVWITATMPYVVLTALLLRGVTLPGAIDGIK 236
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 275 bits (705), Expect = 1e-85
Identities = 132/321 (41%), Positives = 172/321 (53%), Gaps = 50/321 (15%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L I+ I+ GG+ W + LLL W+I Y C+ KG+K +GKVVYFTA FPY +LI
Sbjct: 147 RTTLDISPSIDESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIF 206
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIRG+TL GA DG+K+ P F KL + +VW+DA TQIFFS GLG G+L+A SYN N
Sbjct: 207 LIRGLTLKGAGDGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKN 266
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAH--------------------------- 420
N ++DA+LV IN TS+FA V+FSV+GF A
Sbjct: 267 NCHRDAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYV 326
Query: 421 ---EQRRPVEEVATSGPG------------------LAFLAYPSAVLQLPGAPIWSCLFF 459
V G LAF+ + A+++ PGAP WS LFF
Sbjct: 327 DNYTAINNVTLTENQTLGLTNCSLEDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFF 386
Query: 460 IMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYI 519
+MLL LGL S F T+EG +T + D L + KE +VC+V FLIG + + G Y
Sbjct: 387 LMLLTLGLGSMFGTLEGVLTPLFDS-KILPKVPKEYLTGLVCLVCFLIGLIFTQRSGNYW 445
Query: 520 FQIFDSYAVSGFSLLFLMFFE 540
Q+FDSY+ LL + FE
Sbjct: 446 VQMFDSYS-GTLPLLIIALFE 465
Score = 220 bits (564), Expect = 4e-65
Identities = 105/235 (44%), Positives = 140/235 (59%), Gaps = 32/235 (13%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-IA 92
A+GLGNVWRFPYLC KNGGGAFL+PY++ +L G+P+FF+ELA+GQ L G +GV+ I+
Sbjct: 18 AVGLGNVWRFPYLCQKNGGGAFLIPYVIMLVLEGIPLFFLELAIGQRLRKGSIGVWNTIS 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P G+G A+ V+S + +YY VI+AW FY F S + +PW +C N V
Sbjct: 78 PYLGGIGIASCVVSFLVALYYNVIIAWCFFYLFNSFQYPLPWSSCPTNGNGTGYVE---- 133
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
+C ++ T Y FW R L I+ I+ GG+ W +
Sbjct: 134 ---ECAKSSPTQY------------------------FWYRTTLDISPSIDESGGLNWWM 166
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LLL W+I Y C+ KG+K +GKVVYFTA FPY +LI LIRG+TL GA DG+K
Sbjct: 167 TLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFLIRGLTLKGAGDGLK 221
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 259 bits (664), Expect = 1e-79
Identities = 128/276 (46%), Positives = 186/276 (67%), Gaps = 4/276 (1%)
Query: 267 KRRVLQI--TDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLL 324
+R VL + + GI++LG RW+L L +V ++ +F +WKGVK +GKVV+ TA PY +L
Sbjct: 160 ERGVLHLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVL 219
Query: 325 IALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNK 384
LLI G+TLPGA +GI Y+ +F +L E+ VWIDA TQIF+S G G G L+A SYNK
Sbjct: 220 FVLLIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNK 279
Query: 385 FNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSA 444
F+NN Y+DA+L IN TS +GF IFS++G+MAHE + +E+VAT G GL F+ YP A
Sbjct: 280 FDNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEA 339
Query: 445 VLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVS 504
+ L G+ W+ +FFIMLL LG+DS +E IT + D++ +L++ ++LF V ++
Sbjct: 340 ISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDF-SILKKHRKLFTFGVAFIT 398
Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
FL+ CI GG+Y+ + D++A +G S+LF + E
Sbjct: 399 FLLALFCITNGGIYVLTLLDTFA-AGTSILFAVLME 433
Score = 222 bits (568), Expect = 1e-65
Identities = 115/240 (47%), Positives = 152/240 (63%), Gaps = 26/240 (10%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA 92
A+ L NVWRFPYLCYKNGGGAFL+PY L I+AGMP+F+MELALGQ G V+KI
Sbjct: 17 FAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQYNREGAATVWKIC 76
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P FKGVGYA +++ ++ YY VI+AW+++Y F S +++PW C N WN+ NC +P
Sbjct: 77 PCFKGVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTSELPWTTCGNVWNSPNCTDP--- 133
Query: 153 VGLKCWNAT----STLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQI--TDGINNLG 206
K NA+ T YSK P EF+ER VL + + GI++LG
Sbjct: 134 ---KLLNASVLGNGTKYSKYKLT--------------PAAEFYERGVLHLHESAGIHDLG 176
Query: 207 GVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
RW+L L +V ++ +F +WKGVK +GKVV+ TA PY +L LLI G+TLPGA +GI
Sbjct: 177 LPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVLFVLLIHGVTLPGAFNGI 236
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 258 bits (661), Expect = 5e-79
Identities = 133/274 (48%), Positives = 183/274 (66%), Gaps = 8/274 (2%)
Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
+R VL I+D I N G VR L L + W++ + C+ +GVK +GKVVYFTA FPY +L
Sbjct: 188 RRYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTATFPYVVLTI 247
Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
L IRGITL GAI GI YY+ P + K+ +++VW DA +QIF+S G G L+ + SYNKF+
Sbjct: 248 LFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGCAWGGLITMASYNKFH 307
Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
NN Y+D++++ N +TS++AGFVIFS++GFMA+ V EVA GPGLAF+AYP A+
Sbjct: 308 NNCYRDSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAFVAYPEALT 367
Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDE----WPHLLRRRKELFVLVVCV 502
LP +P+WS LFF ML+ LGL +QFC +E +TA+VDE W + R K L V +
Sbjct: 368 LLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDEIGNDW---IIRNKTYVTLGVAI 424
Query: 503 VSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFL 536
+ FL+G Q G+Y + D+YA S FSL+ +
Sbjct: 425 IGFLLGIPLTTQAGIYWLLLMDNYAAS-FSLVII 457
Score = 235 bits (601), Expect = 3e-70
Identities = 112/234 (47%), Positives = 149/234 (63%), Gaps = 4/234 (1%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAP 93
A+GLGNVWRFPYLCY+NGGGAF+ PY + + G+P+FFMEL+ GQ S G LGV++++P
Sbjct: 34 AVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWRVSP 93
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
+FKGVGY V+S ++ IYY V++ A +YFFMS+ +PW CNN WNT +C
Sbjct: 94 MFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTN 153
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
A + + +N+ T T P +E+W R VL I+D I N G VR L
Sbjct: 154 RSNATFANMSAVVSNLTELLNR----TLKRTSPSEEYWRRYVLNISDDIGNFGEVRLPLL 209
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
L + W++ + C+ +GVK +GKVVYFTA FPY +L L IRGITL GAI GI
Sbjct: 210 GCLGVSWLVVFLCLIRGVKSSGKVVYFTATFPYVVLTILFIRGITLEGAISGIM 263
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 222 bits (569), Expect = 1e-66
Identities = 101/273 (36%), Positives = 160/273 (58%), Gaps = 7/273 (2%)
Query: 270 VLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGV-KWTGKVVYFTALFPYFLLIALL 328
LQ++DG +LGG W + L+LVW+I +F +++GV K K + L + L+
Sbjct: 129 FLQLSDGPFDLGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLILV 188
Query: 329 IRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNN 388
IR +TLPGA DG+ P++S L + +VWI A QIFFS +G G ++ SY ++
Sbjct: 189 IRALTLPGAADGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMITYASYLPKKSD 248
Query: 389 VYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQL 448
+ +A++V NSS + AG +FS++GFMA Q PV EV +SG GLAF+A+P A+ +
Sbjct: 249 LTNNALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLM 308
Query: 449 -PGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLI 507
PG ++ LFF+ L+F GL S VE I+A+ D++ L R+K V +VC+V FL+
Sbjct: 309 PPGGALFGVLFFLSLVFAGLTSLISLVEVVISALQDKFG--LSRKK--AVTIVCLVGFLV 364
Query: 508 GFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+ G+Y+ I D + ++ + ++ + E
Sbjct: 365 SLLFATGAGLYLLDIVDHF-INNYGIVLVGLVE 396
Score = 122 bits (310), Expect = 4e-30
Identities = 70/236 (29%), Positives = 109/236 (46%), Gaps = 53/236 (22%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+GLGN+WRFPY+ Y+NGGGAFL+PYL+ + AG+P+ +E LG F +I
Sbjct: 18 AVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGIPLLILEYGLGHKFRGSAPLAFRRIN 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
F+ +G+ +++ + YY VI+A
Sbjct: 78 KKFEWIGWWQVLVAFVIATYYAVIIA---------------------------------- 103
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
W + +S + DP + F+ LQ++DG +LGG W +
Sbjct: 104 -----WALSYLFFS-----------FTLAWGDDP-EAFFFGDFLQLSDGPFDLGGFVWPI 146
Query: 213 AATLLLVWVICYFCIWKGV-KWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
L+LVW+I +F +++GV K K + L + L+IR +TLPGA DG+
Sbjct: 147 LIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLILVIRALTLPGAADGLN 202
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 216 bits (553), Expect = 4e-65
Identities = 90/252 (35%), Positives = 139/252 (55%), Gaps = 7/252 (2%)
Query: 291 LLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNF- 349
L W + + C+++GV TG+VVY T P L+I LL RG +LP A DGI+ Y
Sbjct: 117 LAFTWFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFATWRG 176
Query: 350 SKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGF 409
KL E+W A Q+FFS G+G G + A SYN +N +DA+++ NS + AGF
Sbjct: 177 DKLASGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSLFEIIAGF 236
Query: 410 VIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDS 469
+F ++G++ VE A G L F+ YP A+ Q+PG+ ++ LFF+ L LG+ S
Sbjct: 237 AVFGIVGYLGM--TPGVEGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGISS 294
Query: 470 QFCTVEGFITAMVDEWPHLLRRRKELFV-LVVCVVSFLIGFVCIFQGGMYIFQIFDSYAV 528
F +E +T + D R+ K ++ VVC VSFL+ + G Y+ D++ +
Sbjct: 295 AFALLEAVVTLICDS--GWGRKVKRWWIATVVCFVSFLLSLPYCTRFGYYLLDAVDAW-I 351
Query: 529 SGFSLLFLMFFE 540
S +L+F+++ E
Sbjct: 352 SNVALVFVVWAE 363
Score = 92.4 bits (230), Expect = 4e-20
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-KIA 92
A+GLGN+ RFP + Y NGG F +PYLL +L +P+ +ELALGQ G + F I
Sbjct: 17 AVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQAYRGGCVKAFNLIN 76
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYF 124
KGVG A + YY+ ILAW + YF
Sbjct: 77 RRAKGVGAAVVFGGFVVCTYYVPILAWIMVYF 108
Score = 72.0 bits (177), Expect = 2e-13
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 216 LLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
L W + + C+++GV TG+VVY T P L+I LL RG +LP A DGI+
Sbjct: 117 LAFTWFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIR 168
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 204 bits (521), Expect = 3e-59
Identities = 109/287 (37%), Positives = 171/287 (59%), Gaps = 19/287 (6%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L I+ I+ GG+ W++ LL WV+ + KG++ +GK++YF++LFPY +L
Sbjct: 149 REALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACF 208
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
L+RG+ L G++DGI++ P + E +VW +A TQ+FF+ GLG G ++A SYNK +N
Sbjct: 209 LVRGLLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDN 268
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGF---MAHEQRRPV---------EEV--ATSG 433
N + DA+LV IN TS+ A V+F+V+GF E+ +E+ A G
Sbjct: 269 NCHFDAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAVQG 328
Query: 434 PGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRK 493
GLAF+A+ A+ P +P WS +FF+ML+ LGL S F T+EG T +VD + + RK
Sbjct: 329 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTF----KVRK 384
Query: 494 ELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
E+ ++ C+ +FLIG + + + G Y +FD Y+ + LL ++ E
Sbjct: 385 EILTVICCLFAFLIGLIFVQRSGNYFVTMFDDYSAT-LPLLIVVILE 430
Score = 179 bits (456), Expect = 6e-50
Identities = 88/236 (37%), Positives = 141/236 (59%), Gaps = 30/236 (12%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-I 91
++GLGNVWRFPYLC KNGGGA+LVPYL+ I+ G+P+FF+EL++GQ + G +GV+ I
Sbjct: 17 FSVGLGNVWRFPYLCQKNGGGAYLVPYLILLIVIGIPLFFLELSVGQRIRRGSIGVWNYI 76
Query: 92 APIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYE 151
+P G+G+A+ ++ ++ +YY VI+ W++FYF S + +PW C N +
Sbjct: 77 SPKLGGIGFASCIVCLFVALYYNVIIGWSLFYFSQSFQYPLPWDQCPLVKNASHTF---- 132
Query: 152 RVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWE 211
V +C +++T Y +W R L I+ I+ GG+ W+
Sbjct: 133 -VEPECEKSSATTY------------------------YWYREALNISSSISESGGLNWK 167
Query: 212 LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
+ LL WV+ + KG++ +GK++YF++LFPY +L L+RG+ L G++DGI+
Sbjct: 168 MTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFLVRGLLLNGSVDGIR 223
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 205 bits (523), Expect = 5e-59
Identities = 113/327 (34%), Positives = 157/327 (48%), Gaps = 55/327 (16%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L I+ I GG++WE A L+L W++ Y CI +G + TGKVVY TA PY +LI
Sbjct: 150 RETLNISPSIEESGGIQWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIY 209
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIRG+TL GA +G+KY P +L + WI+A TQIFFS GLG G+L+A SYN+ +N
Sbjct: 210 LIRGLTLHGAANGLKYMFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSN 269
Query: 388 NVYKDAMLVCAINSSTSMFA-----------------------------------GFVIF 412
N + A++V INS TS+FA G +
Sbjct: 270 NCERHAIIVSLINSGTSIFASIVTFSIYGFKATFNYENCLKKVILLLTNTFDLEEGSITM 329
Query: 413 SVIGFMAH----------EQRRPVE---------EVATSGPGLAFLAYPSAVLQLPGAPI 453
S + M Q P + A G GLAF+ Y A+ + + +
Sbjct: 330 SNLEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQGTGLAFIVYSEAIKNMEVSQL 389
Query: 454 WSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIF 513
WS L+F MLL LG+ S +T + D KE +VC ++ +IG V
Sbjct: 390 WSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCFINCIIGLVFTM 449
Query: 514 QGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+ G Y F IF+ YA + SLL ++ E
Sbjct: 450 EAGNYWFDIFNDYAAT-LSLLLIVLVE 475
Score = 200 bits (509), Expect = 4e-57
Identities = 101/235 (42%), Positives = 135/235 (57%), Gaps = 32/235 (13%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-IA 92
A+GLGNVWRFPYLC GGG FL+PYL+ IL GMP+ ++ELA+GQ + G +G +K I+
Sbjct: 21 AVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLELAVGQRMRQGSIGAWKSIS 80
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P GVG A+ V+S ++++YY VI AWA +Y F S + +PW C N E
Sbjct: 81 PYLGGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVCPL---NSNRTGYTE- 136
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
+C A+ T Y FW R L I+ I GG++WE
Sbjct: 137 ---ECEKASPTQY------------------------FWYRETLNISPSIEESGGIQWEQ 169
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
A L+L W++ Y CI +G + TGKVVY TA PY +LI LIRG+TL GA +G+K
Sbjct: 170 ALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYLIRGLTLHGAANGLK 224
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 186 bits (473), Expect = 7e-52
Identities = 95/234 (40%), Positives = 142/234 (60%), Gaps = 30/234 (12%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-IA 92
++GLGNVWRFPYLC KNGGGA+LVPYL+ I+ G+P+FF+ELA+GQ + G +GV+ I
Sbjct: 18 SVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWNYIC 77
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P G+GYA+ ++ ++ +YY VI+ W++FYFF S + +PW C N V
Sbjct: 78 PRLGGIGYASCLVCFFVGLYYNVIIGWSIFYFFKSFQYPLPWSECPIVRNGSVAV----- 132
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
V +C +++T Y FW R L I++ I+ GG+ W++
Sbjct: 133 VEAECEKSSATTY------------------------FWYREALDISNSISESGGLNWKM 168
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
LL+ W I + KG++ +GKV+YF++LFPY +L+ L+RG+ L GA+DGI
Sbjct: 169 TLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFLVRGLLLRGAVDGI 222
Score = 140 bits (355), Expect = 8e-36
Identities = 67/153 (43%), Positives = 102/153 (66%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L I++ I+ GG+ W++ LL+ W I + KG++ +GKV+YF++LFPY +L+
Sbjct: 149 REALDISNSISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCF 208
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
L+RG+ L GA+DGI + P K+ + +VW +A TQ+FF+ GLG G ++A SYNK +N
Sbjct: 209 LVRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDN 268
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAH 420
N + DA LV IN TS+ A V+F+V+GF A+
Sbjct: 269 NCHFDAALVSFINFFTSVLATLVVFAVLGFKAN 301
Score = 76.9 bits (189), Expect = 9e-15
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 430 ATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLL 489
+ G GLAF+A+ A+ P +P WS +FF+ML+ LGL S T+ G T ++D +
Sbjct: 375 SVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTF---- 430
Query: 490 RRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVS 529
+ RKE+F + C+ +FL+G + + + G Y +FD Y+ +
Sbjct: 431 KVRKEVFTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSAT 470
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 181 bits (462), Expect = 2e-50
Identities = 93/234 (39%), Positives = 131/234 (55%), Gaps = 32/234 (13%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-IA 92
A+GLGN+WRFPYLC GGGAFL+PY + + G+P+F +ELA+GQ L G +GV+ I+
Sbjct: 19 AVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLELAIGQRLRKGSIGVWTTIS 78
Query: 93 PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYER 152
P GVG +S +++YY ILAW ++YF S + +PW +C
Sbjct: 79 PYLGGVGLGCVTVSFLVSLYYNTILAWVLWYFLNSFQHPLPWSSCP-------------- 124
Query: 153 VGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWEL 212
+ T + +E + V FW R+ L IT IN+ G ++W L
Sbjct: 125 -----LDLNRTGFVEECQG------------STAVSYFWYRQTLNITPDINDSGSIQWWL 167
Query: 213 AATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGI 266
L W I Y C+ +G++ TGKV+YFTALFPY +L LIRG+TLPGA +G+
Sbjct: 168 LLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATEGL 221
Score = 154 bits (390), Expect = 1e-40
Identities = 73/152 (48%), Positives = 96/152 (63%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R+ L IT IN+ G ++W L L W I Y C+ +G++ TGKV+YFTALFPY +L
Sbjct: 148 RQTLNITPDINDSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIF 207
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIRG+TLPGA +G+ Y PN L VW+DA TQIFFS L G +A SYN N
Sbjct: 208 LIRGLTLPGATEGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRN 267
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMA 419
+ KDA+ + +NS TS++A +FSV+GF A
Sbjct: 268 DCEKDAVTIALVNSMTSLYASIPVFSVLGFKA 299
Score = 96.0 bits (239), Expect = 6e-21
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 430 ATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLL 489
+ SGPGLAF+ + AVL +PGA +W+ LFF ML LGL S F VEG IT ++D +L
Sbjct: 362 SASGPGLAFIVFTEAVLHMPGAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDV--GVL 419
Query: 490 RRR--KELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
R KE +VC+V FL Q G Y +IFDS+A S +LL + FFE
Sbjct: 420 PRWVPKEALTGLVCLVCFLSALCFTLQSGNYWLEIFDSFAAS-LNLLVIAFFE 471
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 178 bits (452), Expect = 5e-49
Identities = 89/236 (37%), Positives = 143/236 (60%), Gaps = 30/236 (12%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-I 91
++GLGNVWRFPYLC KNGGGA+LVPYL+ ++ G+P+FF+EL++GQ + G +GV+ I
Sbjct: 17 FSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYI 76
Query: 92 APIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYE 151
+P G+G+A+ ++ ++ +YY VI+ W++FYF S + +PW C KN + +
Sbjct: 77 SPKLGGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWDQCP---LVKNASHTF- 132
Query: 152 RVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWE 211
V +C +++T Y +W R L I+ I+ GG+ W+
Sbjct: 133 -VEPECEKSSATTY------------------------YWYREALNISSSISESGGLNWK 167
Query: 212 LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
+ LL WV+ + KG++ +GK++YF++LFPY +LI LIR + L G++DGI+
Sbjct: 168 MTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIRALLLNGSVDGIR 223
Score = 138 bits (348), Expect = 6e-35
Identities = 66/153 (43%), Positives = 101/153 (66%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L I+ I+ GG+ W++ LL WV+ + KG++ +GK++YF++LFPY +LI
Sbjct: 149 REALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICF 208
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIR + L G++DGI++ P + E +VW +A TQ+FF+ GLG G ++A SYNK +N
Sbjct: 209 LIRALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDN 268
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAH 420
N + DA+LV IN TS+ A V+F+V+GF A+
Sbjct: 269 NCHFDAVLVSFINFFTSVLATLVVFAVLGFKAN 301
Score = 84.2 bits (208), Expect = 4e-17
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 430 ATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLL 489
A G GLAF+A+ A+ P +P WS +FF+ML+ LGL S F T+EG IT +VD +
Sbjct: 375 AVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTF---- 430
Query: 490 RRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
+ RKE+ ++ C+++F IG + + + G Y +FD Y+ + LL ++ E
Sbjct: 431 KVRKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSAT-LPLLIVVILE 480
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 172 bits (439), Expect = 2e-47
Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 34/239 (14%)
Query: 33 LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-I 91
++GLGN+WRFPYLC +NGGG+FL+ Y + L G+P+ F+E+A+GQ L G + V+K I
Sbjct: 17 FSLGLGNLWRFPYLCLRNGGGSFLIAYFVMLFLVGIPLLFLEMAVGQRLQQGSIRVWKAI 76
Query: 92 APIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYE 151
+P F GVGY++ + + +YY V+ +WA+FY S + +PW C
Sbjct: 77 SPWFGGVGYSSVLACFLVALYYNVVNSWALFYLGHSFQFPLPWEQCPL------------ 124
Query: 152 RVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWE 211
+ + T P FW ++ L+ +D I + G +
Sbjct: 125 ---------------------VKNSSDPECARTTPSGYFWYQKTLKASDRIEDGGSLVGH 163
Query: 212 LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRV 270
LA +L + W + Y + +G+K TGK + F L PY +L+ LLIR + L GA G+ +
Sbjct: 164 LALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCLLIRSLFLEGAFFGLLWLL 222
Score = 171 bits (434), Expect = 1e-46
Identities = 97/309 (31%), Positives = 143/309 (46%), Gaps = 38/309 (12%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
++ L+ +D I + G + LA +L + W + Y + +G+K TGK + F L PY +L+ L
Sbjct: 145 QKTLKASDRIEDGGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCL 204
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIR + L GA G+ + ++ S L +W A Q+ FS GLG GTL+ SY N
Sbjct: 205 LIRSLFLEGAFFGLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKN 264
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATS--------------- 432
N DA +V +N TS+ A + F+V+GF A E
Sbjct: 265 NCLTDAFVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPP 324
Query: 433 ---------------------GPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQF 471
GPG AFLA+ A+ PG+ W+ +FF+ LL GL + F
Sbjct: 325 ADLSLDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMF 384
Query: 472 CTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGF 531
++G T + D + + K L VLV CV FL G V G Y + D Y V
Sbjct: 385 GIMQGIYTPLQDTFSFFRKHPKLLTVLV-CVGLFLGGLVFTQPSGSYFRSLLDDYLV-PL 442
Query: 532 SLLFLMFFE 540
++F++ FE
Sbjct: 443 PIIFIVVFE 451
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 166 bits (422), Expect = 6e-45
Identities = 87/234 (37%), Positives = 127/234 (54%), Gaps = 32/234 (13%)
Query: 35 IGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-IAP 93
+GLGNVWRFPYLC +GGGAF++P+L+ + G+P+ +E A+GQ L G +GV+ I P
Sbjct: 19 VGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHP 78
Query: 94 IFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERV 153
KGVG A+ +S +++YY I+AW ++YFF S + +PW C
Sbjct: 79 TLKGVGIASMCVSFLVSLYYNTIIAWVMWYFFNSFQEPLPWSQCP--------------- 123
Query: 154 GLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELA 213
N T Y E + PV FW R L + I++ GG++W +
Sbjct: 124 ----LNENRTGYIPEC------------AKSSPVDYFWYRETLNTSTSIDDSGGIQWWMV 167
Query: 214 ATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
L W + Y C +G++ TGK VY T+ PY +L LIRG+TL G+++GIK
Sbjct: 168 LCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFLIRGLTLKGSVNGIK 221
Score = 136 bits (345), Expect = 2e-34
Identities = 62/155 (40%), Positives = 97/155 (62%)
Query: 268 RRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIAL 327
R L + I++ GG++W + L W + Y C +G++ TGK VY T+ PY +L
Sbjct: 147 RETLNTSTSIDDSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIF 206
Query: 328 LIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNN 387
LIRG+TL G+++GIK+ P+ ++L W+DA Q+F+S+ L G L++ SYN +N
Sbjct: 207 LIRGLTLKGSVNGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHN 266
Query: 388 NVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQ 422
N KDA+++ IN TS++A VI+S+IGF A E+
Sbjct: 267 NCEKDAVIISVINGFTSIYAATVIYSIIGFRATER 301
Score = 82.6 bits (204), Expect = 1e-16
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 430 ATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVD------ 483
G GLAF+ + A+ ++P +P+WS LFFIML LGL S F +EG + + D
Sbjct: 361 GVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPK 420
Query: 484 EWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
WP KE+ ++C+VSFLIG + + G Y +FDS+A S LL + F E
Sbjct: 421 SWP------KEIITGLICLVSFLIGLIFVLGSGNYWLALFDSFAGS-IPLLIIAFCE 470
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 146 bits (370), Expect = 2e-38
Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 22/261 (8%)
Query: 285 WELAATLLLVWVICYFCIWKGV-----KWTGKVVYFTALFPYFLLIALLIRGITLPGAID 339
LL V+ + +GV K + LF L I L+IR +TLPGA++
Sbjct: 142 GLAVIFHLLFLVLTALIVSRGVKKGIEKAN--KIMMPLLF--VLFIILVIRAVTLPGAME 197
Query: 340 GIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAI 399
G+K+ P+FSKL + +VW+ A+ Q FFS LG G ++ SY +++ A+ + +
Sbjct: 198 GLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLL 257
Query: 400 NSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFF 459
N+ S+ AG VIF + + A+ GPGL F+ P+ Q+P ++ LFF
Sbjct: 258 NTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLPAVFNQMPLGTLFGILFF 309
Query: 460 IMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYI 519
++LLF L S +E + A++D++ + R+K ++ ++ FL+G I G+ I
Sbjct: 310 LLLLFAALTSAISMLEVLVAALIDKFG--ISRKK--ATWLIGILIFLLGIPSILSFGLSI 365
Query: 520 FQIFDSYAVSGFSLLFLMFFE 540
F + D + VS +
Sbjct: 366 FDLVD-FVVSNILMPLGALLI 385
Score = 96.1 bits (240), Expect = 3e-21
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK--- 90
A+GLGN+WRFPY+ +NGGGAFL+PYL+ +L G+P+ E A+G+ +G F+
Sbjct: 22 AVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLA 81
Query: 91 IAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSL 128
++ +G+ + + +Y VI W + Y SL
Sbjct: 82 PKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSL 119
Score = 35.3 bits (82), Expect = 0.071
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 210 WELAATLLLVWVICYFCIWKGV-----KWTGKVVYFTALFPYFLLIALLIRGITLPGAID 264
LL V+ + +GV K + LF L I L+IR +TLPGA++
Sbjct: 142 GLAVIFHLLFLVLTALIVSRGVKKGIEKAN--KIMMPLLF--VLFIILVIRAVTLPGAME 197
Query: 265 GIK 267
G+K
Sbjct: 198 GLK 200
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 127 bits (322), Expect = 6e-32
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 26/256 (10%)
Query: 287 LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYII 346
LLL +I + KG++ K++ LF LLI L IR +TLPGA +G+K+
Sbjct: 145 HLLFLLLTALIVARGVKKGIERASKILMP-LLF--VLLIILAIRSLTLPGAGEGLKFLFK 201
Query: 347 PNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMF 406
P+FSKL EV + A+ Q FFS LG+G ++ GSY + N+ K A++V +++ ++
Sbjct: 202 PDFSKLT-PEVVLAALGQAFFSLSLGMGVMITYGSYLPKDENLPKSALIVAILDTLVALL 260
Query: 407 AGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLG 466
AG VIF + F + +GPGL F+ P+ Q+PG ++ LFF++LLF
Sbjct: 261 AGLVIFPAV-FAFGLE-------PAAGPGLLFITLPAVFAQMPGGRLFGILFFLLLLFAA 312
Query: 467 LDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIF---------QGGM 517
L S +E + ++DE+ R++ L+V ++ FL+G G
Sbjct: 313 LTSAISLLEVPVAYLIDEF-GWSRKKA---TLIVGIIIFLLGIPSALSFGVLSDPTIFGK 368
Query: 518 YIFQIFDSYAVSGFSL 533
IF + D + VS L
Sbjct: 369 TIFDLLD-FLVSNILL 383
Score = 91.0 bits (227), Expect = 1e-19
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF---- 89
A+GLGN+WRFPYL +NGGGAFL+ YLL +L G+P+ E A+G+ +G F
Sbjct: 17 AVGLGNIWRFPYLAGENGGGAFLLVYLLFVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLA 76
Query: 90 KIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSL 128
K +K VG+ + + + +Y V+ W + Y F SL
Sbjct: 77 KGGKKWKLVGWLGVLGAFLILSFYSVVGGWVLAYLFKSL 115
Score = 32.0 bits (74), Expect = 0.78
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 212 LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIK 267
LLL +I + KG++ K++ LF LLI L IR +TLPGA +G+K
Sbjct: 145 HLLFLLLTALIVARGVKKGIERASKILMP-LLF--VLLIILAIRSLTLPGAGEGLK 197
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 73.1 bits (180), Expect = 1e-13
Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 29/264 (10%)
Query: 290 TLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLP-------GAIDGIK 342
TL L + I Y + KG++ K+ Y I L IR +TL A+ G+
Sbjct: 154 TLALNFFILYRGVSKGIEAFAKIAMPLL---YVFAIILAIRVLTLGTPVNPDWTALKGLN 210
Query: 343 YYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSS 402
+ P+FSKL + +VW+ A QIFF+ LG+G ++ SY + ++++ ++ ++N
Sbjct: 211 FLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASYLRKDDDIVLSSLTAASLNE- 269
Query: 403 TSMFAGFVIFSVI------GFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSC 456
FA ++ I F+ V GL F+A P+ Q+PG +
Sbjct: 270 ---FAEVILGGSIVIPAAFAFLG-----AVAVAKAGTFGLGFIALPNVFSQMPGGQFFGF 321
Query: 457 LFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGG 516
L+F +L F G+ S + + A ++E R+ L++ +V + V
Sbjct: 322 LWFFLLFFAGITSSI-AMLQPLIAFLEEELKWSRKHAALWIFA--LVIIVGLPVAFEFID 378
Query: 517 MYIFQIFDSYAVSGFSLLFLMFFE 540
+ D + + L+ L E
Sbjct: 379 LKALDELDFWVGT-ILLVVLGLIE 401
Score = 71.5 bits (176), Expect = 3e-13
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGG-------- 85
A+GLGN RFP +NGGGAF++PY + +L G+P+ ++E A+G+ GG
Sbjct: 18 AVGLGNFLRFPVQAAQNGGGAFMIPYFIAFLLVGIPLMWVEWAMGRY---GGKHGHGTTP 74
Query: 86 --LGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSL 128
+ K K +G + +N YY+ I +W + Y F SL
Sbjct: 75 MIFLLAKRNIFAKILGAIGFAIPLLVNSYYVYIESWTLGYAFKSL 119
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 44.9 bits (106), Expect = 7e-05
Identities = 33/257 (12%), Positives = 76/257 (29%), Gaps = 12/257 (4%)
Query: 290 TLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAI-DGIKYYIIPN 348
L+ V + + WT + + + + + + I + +
Sbjct: 121 LALIAVVYSIYGGLSAIVWTDVIAVPFLVLGGVMTVYMAVSFIGGFAGVSKMVDAAPGHF 180
Query: 349 FSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG 408
L + + + G + + + +V + + ++ M
Sbjct: 181 EMILNLPGIAVAIGGLWVANL-YYWGFIQYIIQRTLADKSVSEAQK--GIVFAAFLMLIA 237
Query: 409 FVIFSVIGFMAH----EQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLF 464
++ +IG A+ + + A AYP LPG+ L F L
Sbjct: 238 PILVGLIGIAAYVITSDPQLMASLGNLPSAANADKAYPWLTQFLPGSVGVKGLVFAALAA 297
Query: 465 LGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFD 524
+ S + T + + + + V+V VV LI + + +
Sbjct: 298 AIVSSLAAMLNSTATILTMDIYKVFTFKTG--VIVTAVVVLLIAALQFAGVKGLLNTFLN 355
Query: 525 SYA--VSGFSLLFLMFF 539
V +L+ L+ +
Sbjct: 356 LLTSAVGPLALIMLLDY 372
>gnl|CDD|220974 pfam11085, YqhR, Conserved membrane protein YqhR. This family is
conserved in the Bacillaceae family of the Firmicutes.
The function is not known.
Length = 174
Score = 30.4 bits (69), Expect = 1.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 77 LGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVP 133
LG ++S+ +G+ I F V S W I Y + L VF+ + DV
Sbjct: 69 LGNVISIVLIGLISIGAAFLYYALLKKVKSMWPGILYGLALWLLVFFVLNPIFPDVK 125
>gnl|CDD|217911 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 30.7 bits (70), Expect = 2.0
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 434 PGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGF-ITAMVDEWPHLLRR- 491
PGL L Y L A ++LL LGL + GF + + E +R
Sbjct: 166 PGLLLLIYGLLALANLPAYALG----VILLILGL---YLLYRGFGLDDFLRELLKRVRES 218
Query: 492 -RKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFF 539
+ + VVS ++ + I G + + ++ + G + FL
Sbjct: 219 LYEGRITFITYVVSIILILIGIIYGYLSLEKLSA-ISAGGVAATFLNGA 266
>gnl|CDD|131314 TIGR02261, benz_CoA_red_D, benzoyl-CoA reductase, bcr type, subunit
D. This model describes the D subunit of benzoyl-CoA
reductase, a 4-subunit enzyme. Many aromatic compounds
are metabolized by way of benzoyl-CoA. This family shows
sequence similarity to the A subunit (TIGR02259) and to
the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Length = 262
Score = 30.0 bits (67), Expect = 2.6
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 324 LIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYN 383
+I ++ RGI+ P + GI + +KL +S +D L G L AL
Sbjct: 176 VINMVSRGISAPNILKGIHESMADRLAKLLKSLGALDGTVLCTGGLALDAGLLEAL---- 231
Query: 384 KFNNNVYKDAMLVCAINSSTSMFAGFV 410
+ + + M V A N +++AG +
Sbjct: 232 --KDAIQEAKMAVAAENHPDAIYAGAI 256
>gnl|CDD|213565 TIGR00842, bcct, choline/carnitine/betaine transport. The
Betaine/Carnitine/Choline Transporter (BCCT) Family (TC
2.A.15) Proteins of the BCCT family share the common
functional feature of transporting molecules with a
quaternary ammonium group [R-N+(CH3)3]. The BCCT family
includes transporters for carnitine, choline and glycine
betaine. BCCT transporters have 12 putative TMS, and are
energized by pmf-driven proton symport. Some of these
permeases exhibit osmosensory and osmoregulatory
properties inherent to their polypeptide chains
[Transport and binding proteins, Other].
Length = 452
Score = 30.4 bits (69), Expect = 2.8
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 195 VLQITDGINNLGGVR---WELAATLLLVWVICYFCIW----KGVKWTGKV-VYFTALFPY 246
QI G++ L G+ W A +L V + + KG+K + + L
Sbjct: 161 APQINAGLSALFGIPDSFWLQALIILCVTALACISVASGVGKGIKILSNINMALAFLLLL 220
Query: 247 FLLIA 251
F+LI
Sbjct: 221 FVLIV 225
Score = 30.4 bits (69), Expect = 2.8
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 270 VLQITDGINNLGGVR---WELAATLLLVWVICYFCIW----KGVKWTGKV-VYFTALFPY 321
QI G++ L G+ W A +L V + + KG+K + + L
Sbjct: 161 APQINAGLSALFGIPDSFWLQALIILCVTALACISVASGVGKGIKILSNINMALAFLLLL 220
Query: 322 FLLIA 326
F+LI
Sbjct: 221 FVLIV 225
>gnl|CDD|180724 PRK06842, PRK06842, fumarate hydratase; Provisional.
Length = 185
Score = 29.4 bits (66), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 3 ENKKSPVDTGDQILNLELNQYGGTSPTKPRLAIG 36
+ ++ P+D DQI+ Y G SP KP IG
Sbjct: 46 KGEELPIDIKDQII-----YYVGPSPAKPGKVIG 74
>gnl|CDD|183009 PRK11169, PRK11169, leucine-responsive transcriptional regulator;
Provisional.
Length = 164
Score = 28.6 bits (64), Expect = 4.9
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 23/91 (25%)
Query: 1 MVENKKSPVDTGDQI--------------LNLELNQYGGTSPTKPRLAIGLGNVWRFPYL 46
MV++KK P D+I N+EL++ G SPT L V R
Sbjct: 1 MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP-----CLERVRRLERQ 55
Query: 47 CYKNGGGAFLVPYLLTAILAGMPMFFMELAL 77
+ G A L P+ L A L + F+E+ L
Sbjct: 56 GFIQGYTALLNPHYLDASL----LVFVEITL 82
>gnl|CDD|129873 TIGR00791, gntP, gluconate transporter. This family includes known
gluconate transporters of E. coli and Bacillus species
as well as an idonate transporter from E. coli
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 440
Score = 28.9 bits (65), Expect = 7.3
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 54 AFLVPYLLTAILAGMPMFFM----ELALGQ----MLSVGGLGVFKIAPIFKGVGYAAAVM 105
A LV I GMPM + A+G +L +GG G FK I GVG A +
Sbjct: 270 ALLVAIYTLGIRRGMPMDQVMDSCGSAIGSIAMILLIIGGGGAFKQVLIDSGVGDYIAEL 329
Query: 106 SCWMNIYYIVILAWAV 121
MNI +++AW +
Sbjct: 330 MSGMNI-SPILMAWLI 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.145 0.479
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,713,721
Number of extensions: 2941792
Number of successful extensions: 4600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4424
Number of HSP's successfully gapped: 256
Length of query: 540
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 438
Effective length of database: 6,413,494
Effective search space: 2809110372
Effective search space used: 2809110372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.2 bits)