RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1706
(540 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 156 bits (396), Expect = 7e-42
Identities = 64/318 (20%), Positives = 109/318 (34%), Gaps = 19/318 (5%)
Query: 233 WTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLL 292
WT + ++ + + G + L
Sbjct: 114 WTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFL 173
Query: 293 LVWVICYFCIWKGV-KWTGKVVYFTALFPYFLLIALLIRGITLP----GAIDGIKYYIIP 347
+ I + +G+ K + + L + L+IR L A DG+ + P
Sbjct: 174 ITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTP 233
Query: 348 NFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFA 407
+F KL + VWI AV QIFF+ LG G ++ SY + + ++ + +N +
Sbjct: 234 DFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVIL 293
Query: 408 GFVI--FSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFL 465
G I + + F + + L F+ P+ Q G L+F +L F
Sbjct: 294 GGSISIPAAVAFFGVANAVAIAK--AGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFA 351
Query: 466 GLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFD- 524
GL S ++ I + DE L R+ VL + F + +F D
Sbjct: 352 GLTSSIAIMQPMIAFLEDELK--LSRKH--AVLWTAAIVFFSAHLVMF--LNKSLDEMDF 405
Query: 525 ---SYAVSGFSLLFLMFF 539
+ V F L L+ F
Sbjct: 406 WAGTIGVVFFGLTELIIF 423
Score = 106 bits (266), Expect = 1e-24
Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 51/246 (20%)
Query: 34 AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA- 92
A+GLGN RFP +NGGGAF++PY++ +L G+P+ ++E A+G+ G G
Sbjct: 22 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIF 81
Query: 93 ------PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNC 146
K +G + + IYY+ I +W + + L VP
Sbjct: 82 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVP------------- 128
Query: 147 VNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLG 206
+ ++ + + G +
Sbjct: 129 -------EPPPNATDPDSILRPFKEFLYS-------------------YIGVPKGDEPIL 162
Query: 207 GVRWELAATLLLVWVICYFCIWKGV-KWTGKVVYFTALFPYFLLIALLIRGITLP----G 261
L+ I + +G+ K + + L + L+IR L
Sbjct: 163 KPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT 222
Query: 262 AIDGIK 267
A DG+
Sbjct: 223 AADGLN 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-06
Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 82/301 (27%)
Query: 243 LFPYFL-LIALLIRGIT-------LPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLV 294
L FL ++ L+ L + + L+ D I+ L AA LL
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHAL-------AAKLLQE 111
Query: 295 WVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGIT-------LPGAIDG-IKYYII 346
+ +K Y TA + R +G + I
Sbjct: 112 NDTTLVKTKELIK-----NYITAR-------IMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 347 PNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMF 406
F G ++ + + + ++ +Y + +G L+ + + L+ + +F
Sbjct: 160 --FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA-ETLSE-------LIRTTLDAEKVF 209
Query: 407 -AGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYP-SAVLQLPGAPIWSCLFFIMLLF 464
G +++ ++ + P ++ S P ++ P V+QL + +
Sbjct: 210 TQG---LNILEWLENPSNTPDKDYLLSIP----ISCPLIGVIQL-------AHYVVTAKL 255
Query: 465 LGLD-----SQFCTV----EGFITA----MVDEWPHLLRR-RKELFVLVVCVVSFLIGFV 510
LG S +G +TA D W RK + VL F IG
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------FFIGVR 309
Query: 511 C 511
C
Sbjct: 310 C 310
Score = 38.5 bits (89), Expect = 0.006
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 33/125 (26%)
Query: 176 KNVSTRVLTD--PVKEFWERRVLQIT-----DGINNLGGVRWELAATLL--LVWVICYFC 226
S + D + + +QI DG + +R L+ ++ +V I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LR-VLSGSISERIVDCIIRLP 487
Query: 227 IWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWE 286
VKW F A + L G PG G+ + DG GVR
Sbjct: 488 ----VKWE-TTTQFKAT--HILDF-----G---PGGASGLGVLTHRNKDGT----GVRVI 528
Query: 287 LAATL 291
+A TL
Sbjct: 529 VAGTL 533
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 14 QILNLE--LNQYGGTSP-TKPRLAI 35
+ L+ L Y + + P LAI
Sbjct: 21 ALKKLQASLKLY---ADDSAPALAI 42
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 28.3 bits (62), Expect = 7.3
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 23/123 (18%)
Query: 437 AFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCT----------VEGFITAMVDEWP 486
+ +L + L G + +E +I M+
Sbjct: 113 GVAYTANLLLSGATT--YKLTPAQWFLREGSMFVALSASVFSLLAIAIERYI-TMLKMKL 169
Query: 487 HLLRRRKELFVLVVCV--VSFLIGFVCIF--------QGGMYIFQIFDSYAVSGFSLLFL 536
H LF+L+ +S ++G + I + ++ + + + +F
Sbjct: 170 HNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFT 229
Query: 537 MFF 539
+
Sbjct: 230 LLL 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.145 0.479
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,666,104
Number of extensions: 538751
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 933
Number of HSP's successfully gapped: 32
Length of query: 540
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 442
Effective length of database: 3,965,535
Effective search space: 1752766470
Effective search space used: 1752766470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.1 bits)