RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1706
         (540 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  117 bits (295), Expect = 7e-29
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 8/257 (3%)

Query: 285 WELAATLLLVWVICYFCIWKGVKWTGKVVYFTALF-PYFLLIALLIRGITLPGAIDGIKY 343
                T+ +   I    I KG++   K+   T      FL+I + +       A DG+ +
Sbjct: 166 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNF 225

Query: 344 YIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSST 403
              P+F KL +  VWI AV QIFF+  LG G ++   SY + + ++    +    +N   
Sbjct: 226 LWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKA 285

Query: 404 SMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLL 463
            +  G  I              V         L F+  P+   Q  G      L+F +L 
Sbjct: 286 EVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLF 345

Query: 464 FLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIF 523
           F GL S    ++  I  + DE       RK   +    +V F    V      +     +
Sbjct: 346 FAGLTSSIAIMQPMIAFLEDELK---LSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFW 402

Query: 524 DSYAVSGFSLLFLMFFE 540
                    ++F    E
Sbjct: 403 ----AGTIGVVFFGLTE 415



 Score =  114 bits (287), Expect = 7e-28
 Identities = 48/237 (20%), Positives = 80/237 (33%), Gaps = 44/237 (18%)

Query: 34  AIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA- 92
           A+GLGN  RFP    +NGGGAF++PY++  +L G+P+ ++E A+G+     G G      
Sbjct: 18  AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIF 77

Query: 93  ------PIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNC 146
                    K +G     +   + IYY+ I +W + +    L   VP    N        
Sbjct: 78  YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSIL 137

Query: 147 VNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLG 206
               E +                                    +    V +  + I    
Sbjct: 138 RPFKEFL------------------------------------YSYIGVPKGDEPILKPS 161

Query: 207 GVRWE-LAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGA 262
              +     T+ +   I    I KG++   K+   T       L+  +    T  G 
Sbjct: 162 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT 218


>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 135

 Score = 27.2 bits (59), Expect = 2.7
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 6/80 (7%)

Query: 134 WRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWER 193
                   ++    +  +  G        T  ++               +     E    
Sbjct: 61  SSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAV--KVEVTEAEVELG 118

Query: 194 RVLQITDGINNLGGVRWELA 213
              ++TD      GV W  A
Sbjct: 119 FKGKVTD----PFGVTWIFA 134


>d1v0da_ d.4.1.7 (A:) Caspase-activated DNase, CAD (DffB, DFF40)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 245

 Score = 27.1 bits (60), Expect = 5.1
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 9/42 (21%)

Query: 127 SLRTDVPWRNCNNFWNTKNC-----VNPY----ERVGLKCWN 159
            L T   W +C   ++ ++C     +NPY     R+    WN
Sbjct: 135 RLCTPEGWFSCQGPFDLESCLSKHSINPYGNRESRILFSTWN 176


>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
           {Amycolatopsis orientalis [TaxId: 31958]}
          Length = 202

 Score = 26.3 bits (57), Expect = 9.0
 Identities = 6/66 (9%), Positives = 14/66 (21%)

Query: 107 CWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYS 166
                 Y+           + +R   P     +             + +   +A   L  
Sbjct: 68  PPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALED 127

Query: 167 KEMYCY 172
             +  Y
Sbjct: 128 DTVMSY 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.145    0.479 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,146,296
Number of extensions: 104188
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 21
Length of query: 540
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,171,896
Effective search space: 527353200
Effective search space used: 527353200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.2 bits)