RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17060
(234 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 130 bits (330), Expect = 5e-35
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 65 VLDDQAK 71
+LD++ +
Sbjct: 524 ILDEENR 530
Score = 32.6 bits (75), Expect = 0.11
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 124 EKNLDLMRGEIVGVLKNSSMAFVREL 149
EKN D + + ++ S F+REL
Sbjct: 591 EKNNDALHMSLESLICESRDKFIREL 616
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 128 bits (325), Expect = 2e-34
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 65 VLDDQ 69
+LD+
Sbjct: 458 LLDEA 462
Score = 32.1 bits (74), Expect = 0.16
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 124 EKNLDLMRGEIVGVLKNSSMAFVREL 149
+KN D + G+++ +++SS V+ L
Sbjct: 521 DKNKDTLFGDLISSMQSSSDPLVQGL 546
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 125 bits (315), Expect = 4e-33
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 65 VLDDQ 69
+LD++
Sbjct: 508 LLDEE 512
Score = 27.8 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 124 EKNLDLMRGEIVGVLKNSS-MAFVREL 149
EKN D + E + VLK+S + EL
Sbjct: 566 EKNKDTVYEEQIKVLKSSKKFKLLPEL 592
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 124 bits (314), Expect = 7e-33
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 62
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 63 LCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGR----------G 112
L +LD+Q+ F A N+ + +S+ N +P G
Sbjct: 526 LALLDEQS----VFPNATDNTLITKLHSHFSKKNAKYE------EPRFSKTEFGVTHYAG 575
Query: 113 ETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
+ + + + EKN D ++ ++ K+SS V +L
Sbjct: 576 QVMYE-IQDWLEKNKDPLQQDLELCFKDSSDNVVTKL 611
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 124 bits (313), Expect = 1e-32
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 65 VLDDQ 69
+LD++
Sbjct: 508 LLDEE 512
Score = 28.0 bits (63), Expect = 3.1
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 124 EKNLDLMRGEIVGVLKNSS-MAFVRELVGADPVAVFRWAIVRAFFRGLFAFQEAGRRYRE 182
EKN D + E + VLK+S + EL + A+ + + L + R
Sbjct: 566 EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARP 625
Query: 183 EKGEQNREAT 192
+ + + T
Sbjct: 626 GQTSKEHKKT 635
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 123 bits (311), Expect = 2e-32
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 62
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 63 LCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGR----------G 112
L +LD+Q+ F A N+ + +S+ N +P G
Sbjct: 526 LALLDEQS----VFPNATDNTLITKLHSHFSKKNAKYE------EPRFSKTEFGVTHYAG 575
Query: 113 ETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
+ + + + EKN D ++ ++ K+SS V +L
Sbjct: 576 QVMYE-IQDWLEKNKDPLQQDLELCFKDSSDNVVTKL 611
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 122 bits (309), Expect = 3e-32
Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 63
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 64 CVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWS------ 117
+L+++ F A S + + N M + +P +G +
Sbjct: 531 SILEEEC----MFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRP-NQGPAHFELHHYAG 585
Query: 118 ----PVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
+ EKN D + +V +L S V EL
Sbjct: 586 NVPYSITGWLEKNKDPINENVVALLGASKEPLVAEL 621
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 118 bits (299), Expect = 7e-31
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 61
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 62 LLCVLDDQ 69
LL +LD++
Sbjct: 505 LLALLDEE 512
Score = 31.9 bits (73), Expect = 0.18
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 124 EKNLDLMRGEIVGVLKNSSMAFVREL 149
KN+D + + +L S+ E+
Sbjct: 567 MKNMDPLNDNVAALLHQSTDRLTAEI 592
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 118 bits (297), Expect = 1e-30
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 63
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 64 CVLDDQ 69
+L+++
Sbjct: 532 SILEEE 537
Score = 31.9 bits (73), Expect = 0.18
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 124 EKNLDLMRGEIVGVLKNSSMAFVREL 149
+KN D + +VG+ + SS+ + L
Sbjct: 595 QKNKDPLNETVVGLYQKSSLKLLSTL 620
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 116 bits (292), Expect = 6e-30
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 61
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 62 LLCVLDDQAK 71
+L +LD++
Sbjct: 536 VLALLDEECW 545
Score = 31.3 bits (71), Expect = 0.33
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 124 EKNLDLMRGEIVGVLKNSSMAFVREL 149
KN+D + + +L SS FV +L
Sbjct: 598 TKNMDPLNDNVTSLLNQSSDKFVADL 623
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 27/95 (28%)
Query: 97 PMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGV-LKNSSMAFVRELVGADPV 155
PM+S TQ + + N L G+ V + L N + V V P
Sbjct: 337 PMLSI---------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---VSGPPQ 384
Query: 156 AVFRWAIVRAFFRGLFAFQEAGRRYREEKG-EQNR 189
+ L+ R+ + G +Q+R
Sbjct: 385 S-------------LYGLNLTLRKAKAPSGLDQSR 406
Score = 29.6 bits (66), Expect = 1.1
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 41/112 (36%)
Query: 110 GRGETQWSPVAEMREKNLDLMR--GEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFF 167
G+G T E+R+ L + +VG L S + EL+ + + F
Sbjct: 162 GQGNTD-DYFEELRD----LYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKV-----FT 210
Query: 168 RGLFAFQEAGRRYREEKGEQNREATSVAEWLSHEACTPE------VPGSIPG 213
+GL ++ EWL + + TP+ +P S P
Sbjct: 211 QGL----------------------NILEWLENPSNTPDKDYLLSIPISCPL 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 33/208 (15%), Positives = 51/208 (24%), Gaps = 71/208 (34%)
Query: 15 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD------ 68
E LQ Q + + I+ R L + N LL VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKA 258
Query: 69 ------QAKI----RRKFVGAILNSRTIRCVC------------------SW-------- 92
KI R K V L++ T + +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 93 ----SRGNPMVSCVFW-MIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSSMAFVR 147
NP + I+ G W K+++ + L + +
Sbjct: 319 PREVLTTNPRRLSIIAESIRD---GLATWDNW-----KHVNCDK------LTTIIESSLN 364
Query: 148 ELVGADPVAVFRWAIVRAFFRGLFAFQE 175
L +P A R F L F
Sbjct: 365 VL---EP------AEYRKMFDRLSVFPP 383
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 27.6 bits (61), Expect = 2.7
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 28 YEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIR 87
Y+ GI F D + V L +LD + +++ + +
Sbjct: 59 YDATLVKSRGIDVHSWPFDDGAPPTRAVLDS---WLKLLDTELARQQEDPSVPPPTIGVH 115
Query: 88 CVCSWSRGNPMVSCVFWMIKPTGRGETQWSP---VAEMREK 125
CV R +V+ +++ S +A +REK
Sbjct: 116 CVAGLGRAPILVAL--ALVEYGN-----VSALDAIALIREK 149
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas
hydrophila}
Length = 61
Score = 25.4 bits (55), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 189 REATSVAEWLSHEACTPEV 207
+EA S+A+WL+ E C E
Sbjct: 23 QEAASIADWLAQEECMAEC 41
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target
RHR5, structural genomics, protein structure initiative;
NMR {Rhodobacter sphaeroides}
Length = 95
Score = 25.9 bits (57), Expect = 5.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 159 RW------AIVRAFFRGLFAFQEAGRRY 180
RW A+V+A GL +EA RY
Sbjct: 32 RWVASRKAAVVKAVIHGLITEREALDRY 59
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
3lw5_B*
Length = 740
Score = 26.7 bits (58), Expect = 7.4
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Query: 90 CSWSRGNPMVSCVFWMIKPTGRGETQWS---------PVAEMREKNLDLMRGEIVGVLKN 140
C S + +FWM+ G W VA+ E + LM + N
Sbjct: 574 CDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLGVWEGNVAQFNESSTYLMGWLRDYLWLN 633
Query: 141 SSMAFVRE-LVGADPVAVFRW-----AIVRAFFRGLFAFQEAGRRYREE 183
SS G + ++V+ W +V A F F + R Y +E
Sbjct: 634 SSQLINGYNPFGTNNLSVWAWMFLFGHLVWATG---FMFLISWRGYWQE 679
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 26.7 bits (59), Expect = 7.6
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 171 FAFQEAGRRYREEKGEQNREATSVAEW-LSHEACTPEVPGSIPGGVEVFSASGVRNALSL 229
+ E R R + A + +W + A EV S+P + + G+R+ L
Sbjct: 225 WIAIEMIRDIRRGNWKAE-SAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLDA 282
Query: 230 VK 231
K
Sbjct: 283 AK 284
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Length = 101
Score = 25.6 bits (56), Expect = 8.0
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 159 RW------AIVRAFFRGLFAFQEAGRRY 180
RW A+VR GL EA + Y
Sbjct: 33 RWVASRKIAVVRGVIYGLITLAEAKQTY 60
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 26.5 bits (58), Expect = 8.2
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 171 FAFQEAGRRYREEKGEQNREATSVAEW-LSHEACTPEVPGSIPGGVEVFSASGVRNALSL 229
+A E R+ E + + + E + EV + + + ++ GV
Sbjct: 219 WARVEEWVRFGEVRHPE------LCEIGIPTARAILEVR-EVLPHLPLVASGGVYTGTDG 271
Query: 230 VKII 233
K +
Sbjct: 272 AKAL 275
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 26.2 bits (57), Expect = 8.9
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 28 YEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRTIR 87
+ Y + GI H +D G P+ + +I + + N R
Sbjct: 91 NLLDLYQQCGIITHHHPIADG--------GTPD-----IASCCEIMEELTTCLKNYRKTL 137
Query: 88 CVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREK 125
G + ++ + + +R+
Sbjct: 138 IHSYGGLGRSCLVAACLLLY-LSDTISPEQAIDSLRDL 174
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding,
protein-DNA complex, isomerase/DNA complex; HET: DNA;
1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Length = 314
Score = 26.2 bits (57), Expect = 9.4
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 157 VFR-WAIVRAFFRGLFAFQEAGRRYREEKGEQNREATSVAEWLSHEACTPEVP 208
R + + F + ++ K AE + H TP +
Sbjct: 221 DLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQTAEVVGH---TPSIS 270
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.427
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,709,251
Number of extensions: 220939
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 37
Length of query: 234
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 143
Effective length of database: 4,160,982
Effective search space: 595020426
Effective search space used: 595020426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)