RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17060
(234 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 97.1 bits (241), Expect = 7e-24
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449
Query: 65 VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQ--------- 115
+LD+ I + L+S + + + +VS K G+T
Sbjct: 450 LLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVS------KDRSIGDTCFRLKHYAGD 503
Query: 116 -WSPVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
V +KN D + G+++ +++SS V+ L
Sbjct: 504 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGL 538
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 88.2 bits (218), Expect = 1e-20
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485
Query: 65 VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKP-TGRGETQWS------ 117
+L+++ + + N + + F KP G+ E +S
Sbjct: 486 ILEEECMFPKATDTSFKNKLYDEHLGKSNN--------FQKPKPAKGKAEAHFSLVHYAG 537
Query: 118 ----PVAEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVAVFRWAIVRAFFRGLFAF 173
++ EKN D + ++G+ + SS+ + L + + +F
Sbjct: 538 TVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGSSF 597
Query: 174 QEAGRRYRE 182
Q +RE
Sbjct: 598 QTVSALFRE 606
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 86.3 bits (213), Expect = 4e-20
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 61
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 398 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 457
Query: 62 LLCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTG------RGETQ 115
+L +LD++ + + + + + + T G+
Sbjct: 458 VLALLDEECWFPKATDTSFVEK-----LIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVT 512
Query: 116 WSPVAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
++ + KN+D + + +L SS FV +L
Sbjct: 513 YN-ASAWLTKNMDPLNDNVTSLLNQSSDKFVADL 545
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 85.2 bits (210), Expect = 1e-19
Identities = 52/154 (33%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445
Query: 65 VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMRE 124
+LD++ K+ + + + I + E
Sbjct: 446 LLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKV-EYQCEGFLE 504
Query: 125 KNLDLMRGEIVGVLKNSS-MAFVRELVGADPVAV 157
KN D + E + VLK+S + EL + A+
Sbjct: 505 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAI 538
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 82.8 bits (204), Expect = 6e-19
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483
Query: 65 VLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGR------GETQWSP 118
+L+++ + + + + P G +S
Sbjct: 484 ILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYS- 542
Query: 119 VAEMREKNLDLMRGEIVGVLKNSSMAFVREL 149
+ EKN D + +V +L S V EL
Sbjct: 543 ITGWLEKNKDPINENVVALLGASKEPLVAEL 573
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 80.9 bits (199), Expect = 3e-18
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 5 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 62
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478
Query: 63 LCVLDDQAKIRRKFVGAILNSRTIRCVCSWSRGNPMVSCVFWMIKPTGRGETQ---WSPV 119
L +LD+Q+ A N+ + +S+ N + G +
Sbjct: 479 LALLDEQSVFPN----ATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEI 534
Query: 120 AEMREKNLDLMRGEIVGVLKNSSMAFVRELVGADPVA 156
+ EKN D ++ ++ K+SS V +L +A
Sbjct: 535 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA 571
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 26.2 bits (57), Expect = 2.8
Identities = 10/100 (10%), Positives = 23/100 (23%), Gaps = 14/100 (14%)
Query: 26 FQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIRRKFVGAILNSRT 85
+ Y + GI H +D +I + + N R
Sbjct: 65 VPNLLDLYQQCGIITHHHPIADGGTPDI-------------ASCCEIMEELTTCLKNYRK 111
Query: 86 IRCVCSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREK 125
G + ++ + + +R+
Sbjct: 112 TLIHSYGGLGRSCLVAACLLLY-LSDTISPEQAIDSLRDL 150
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 93
Score = 25.1 bits (55), Expect = 3.6
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 159 RW------AIVRAFFRGLFAFQEAGRRY 180
RW A+VR GL EA + Y
Sbjct: 33 RWVASRKIAVVRGVIYGLITLAEAKQTY 60
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 25.6 bits (56), Expect = 7.0
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 26/116 (22%)
Query: 90 CSWSRGNPMVSCVFWMIKPTGRGETQWSPVAEMREKNLDLMRGEIVGVLKNSS---MAFV 146
C S + +FWM+ G W K+L + G V SS M ++
Sbjct: 574 CDISAWDAFYLAMFWMLNTIGWVTFYWH------WKHLGVWEG-NVAQFNESSTYLMGWL 626
Query: 147 RELV--------------GADPVAVFRWAIVRAFF--RGLFAFQEAGRRYREEKGE 186
R+ + G + ++V+ W + F F + R Y +E E
Sbjct: 627 RDYLWLNSSQLINGYNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIE 682
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.2 bits (55), Expect = 8.7
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 10 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 48
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 24.8 bits (54), Expect = 8.8
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 171 FAFQEAGRRYREEKGEQNREATSVAEWLSHE 201
F R +R+ + E R + AE + H
Sbjct: 20 FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHG 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.427
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,730
Number of extensions: 41841
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 14
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)