Query psy17062
Match_columns 520
No_of_seqs 389 out of 3671
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:53:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 4.3E-38 9.4E-43 314.1 20.6 334 138-514 189-571 (802)
2 KOG1514|consensus 100.0 5.7E-34 1.2E-38 290.2 24.9 265 122-387 379-651 (767)
3 PTZ00112 origin recognition co 100.0 1.8E-30 4E-35 271.7 24.8 240 122-362 738-988 (1164)
4 KOG0730|consensus 100.0 4E-30 8.6E-35 261.1 18.2 289 139-515 184-495 (693)
5 COG1474 CDC6 Cdc6-related prot 100.0 1E-28 2.2E-33 246.7 21.9 250 128-387 6-261 (366)
6 KOG2227|consensus 100.0 4.5E-27 9.7E-32 230.1 21.6 235 126-362 137-378 (529)
7 KOG0736|consensus 100.0 8.2E-28 1.8E-32 246.6 16.4 302 141-514 403-731 (953)
8 TIGR02639 ClpA ATP-dependent C 100.0 1.9E-27 4E-32 260.7 18.3 300 139-514 182-510 (731)
9 TIGR02928 orc1/cdc6 family rep 99.9 5.7E-26 1.2E-30 231.6 25.3 252 128-388 4-271 (365)
10 PRK00411 cdc6 cell division co 99.9 2.3E-25 5.1E-30 229.5 24.5 255 125-389 16-280 (394)
11 TIGR01243 CDC48 AAA family ATP 99.9 4.4E-26 9.6E-31 250.7 20.2 191 136-352 175-387 (733)
12 COG1222 RPT1 ATP-dependent 26S 99.9 3.8E-26 8.2E-31 217.0 16.2 219 139-384 151-393 (406)
13 PRK11034 clpA ATP-dependent Cl 99.9 8.3E-26 1.8E-30 244.3 17.3 308 138-513 185-513 (758)
14 CHL00095 clpC Clp protease ATP 99.9 1.1E-25 2.4E-30 249.4 16.8 199 138-361 178-399 (821)
15 TIGR03345 VI_ClpV1 type VI sec 99.9 1.7E-25 3.7E-30 246.5 18.1 198 139-361 187-408 (852)
16 COG0542 clpA ATP-binding subun 99.9 3.7E-26 8E-31 241.4 11.9 342 138-515 169-548 (786)
17 KOG0734|consensus 99.9 6.1E-25 1.3E-29 217.1 13.3 251 139-416 304-574 (752)
18 TIGR03346 chaperone_ClpB ATP-d 99.9 1.9E-23 4.1E-28 232.3 18.6 202 139-361 173-394 (852)
19 KOG0735|consensus 99.9 3.1E-23 6.6E-28 211.3 17.6 280 163-513 430-726 (952)
20 PRK10865 protein disaggregatio 99.9 7.5E-23 1.6E-27 226.4 19.4 199 139-362 178-400 (857)
21 KOG0730|consensus 99.9 1.5E-22 3.2E-27 206.3 15.4 217 139-388 434-671 (693)
22 COG2256 MGS1 ATPase related to 99.9 4.3E-22 9.3E-27 192.5 14.6 182 139-362 24-219 (436)
23 PF05496 RuvB_N: Holliday junc 99.9 1.5E-21 3.3E-26 177.4 14.8 195 130-361 16-227 (233)
24 KOG0733|consensus 99.9 4.2E-21 9.2E-26 193.0 17.3 172 162-360 543-730 (802)
25 COG1223 Predicted ATPase (AAA+ 99.9 4.2E-21 9.2E-26 174.5 14.3 219 135-389 117-353 (368)
26 KOG0741|consensus 99.9 3.8E-21 8.3E-26 190.2 13.7 197 132-352 212-446 (744)
27 PRK03992 proteasome-activating 99.8 3.6E-20 7.9E-25 188.6 15.1 200 135-361 127-350 (389)
28 KOG0989|consensus 99.8 9.8E-20 2.1E-24 170.1 14.5 193 139-361 36-236 (346)
29 KOG0731|consensus 99.8 1.1E-19 2.4E-24 191.0 15.2 251 137-414 309-584 (774)
30 KOG0728|consensus 99.8 2.2E-19 4.8E-24 162.4 14.2 200 135-361 139-366 (404)
31 COG2255 RuvB Holliday junction 99.8 4.8E-19 1E-23 163.8 16.3 214 139-396 26-256 (332)
32 KOG0738|consensus 99.8 2.7E-19 5.8E-24 171.5 14.6 194 139-361 212-430 (491)
33 CHL00176 ftsH cell division pr 99.8 1.7E-19 3.7E-24 192.3 14.0 252 136-415 180-454 (638)
34 KOG0727|consensus 99.8 2.7E-19 5.8E-24 162.1 12.3 214 140-380 156-393 (408)
35 PTZ00454 26S protease regulato 99.8 5E-19 1.1E-23 179.3 15.7 199 136-361 142-364 (398)
36 PTZ00361 26 proteosome regulat 99.8 2.3E-19 4.9E-24 182.8 13.3 213 139-388 183-421 (438)
37 COG0465 HflB ATP-dependent Zn 99.8 1.9E-19 4.1E-24 186.3 12.5 254 136-416 147-423 (596)
38 KOG0652|consensus 99.8 4.6E-19 1E-23 161.3 12.0 195 140-361 172-390 (424)
39 KOG2028|consensus 99.8 4.4E-19 9.5E-24 168.5 11.8 189 140-360 139-341 (554)
40 KOG0729|consensus 99.8 7E-19 1.5E-23 160.6 11.7 223 139-388 177-423 (435)
41 TIGR01241 FtsH_fam ATP-depende 99.8 5.8E-19 1.3E-23 186.1 12.6 195 139-360 55-272 (495)
42 TIGR02881 spore_V_K stage V sp 99.8 1E-17 2.2E-22 162.2 20.1 204 140-361 7-236 (261)
43 CHL00195 ycf46 Ycf46; Provisio 99.8 2.1E-18 4.5E-23 178.5 15.9 196 139-361 228-442 (489)
44 PRK00080 ruvB Holliday junctio 99.8 4.1E-18 8.9E-23 170.6 17.1 188 138-361 24-228 (328)
45 KOG0735|consensus 99.8 4.4E-18 9.6E-23 174.0 17.1 189 140-353 668-877 (952)
46 TIGR00635 ruvB Holliday juncti 99.8 6E-18 1.3E-22 168.2 17.0 187 139-361 4-207 (305)
47 PRK14956 DNA polymerase III su 99.8 9.2E-18 2E-22 170.7 18.5 204 139-361 18-228 (484)
48 TIGR01242 26Sp45 26S proteasom 99.8 2.3E-18 4.9E-23 174.9 14.0 200 135-361 118-341 (364)
49 PRK07003 DNA polymerase III su 99.8 1.3E-17 2.9E-22 175.4 20.0 190 139-361 16-226 (830)
50 KOG0736|consensus 99.8 6E-18 1.3E-22 174.6 16.8 194 139-359 672-891 (953)
51 KOG0739|consensus 99.8 4.5E-18 9.8E-23 157.6 13.7 194 117-349 130-338 (439)
52 PLN00020 ribulose bisphosphate 99.8 9.4E-18 2E-22 162.7 16.5 157 161-345 145-331 (413)
53 KOG0737|consensus 99.8 5.6E-18 1.2E-22 162.6 14.1 171 162-361 125-309 (386)
54 PLN03025 replication factor C 99.8 5.4E-17 1.2E-21 161.8 20.1 196 134-360 5-205 (319)
55 TIGR01243 CDC48 AAA family ATP 99.8 1.4E-17 3.1E-22 183.5 17.2 196 139-361 453-670 (733)
56 PRK12323 DNA polymerase III su 99.7 3.2E-17 7E-22 170.5 17.8 190 139-361 16-231 (700)
57 PRK04195 replication factor C 99.7 5.5E-17 1.2E-21 170.4 19.8 189 140-361 15-208 (482)
58 TIGR02880 cbbX_cfxQ probable R 99.7 1.1E-16 2.4E-21 156.1 18.5 201 140-361 23-251 (284)
59 PRK14960 DNA polymerase III su 99.7 9E-17 1.9E-21 167.7 18.1 190 139-361 15-225 (702)
60 PRK14949 DNA polymerase III su 99.7 1.6E-16 3.5E-21 170.5 20.0 189 139-361 16-226 (944)
61 PRK13342 recombination factor 99.7 1.2E-16 2.7E-21 164.6 18.1 184 139-361 12-202 (413)
62 CHL00181 cbbX CbbX; Provisiona 99.7 2E-16 4.4E-21 154.1 18.6 178 163-361 58-252 (287)
63 PRK13341 recombination factor 99.7 1.5E-16 3.2E-21 171.9 18.6 188 139-361 28-223 (725)
64 PRK14962 DNA polymerase III su 99.7 1.7E-16 3.7E-21 164.2 18.3 189 139-361 14-224 (472)
65 KOG0991|consensus 99.7 5.4E-17 1.2E-21 145.6 12.0 192 139-361 27-220 (333)
66 KOG0726|consensus 99.7 7.9E-18 1.7E-22 155.6 6.5 196 140-362 186-405 (440)
67 PRK07994 DNA polymerase III su 99.7 3.4E-16 7.3E-21 165.8 19.8 190 138-360 15-225 (647)
68 PRK06893 DNA replication initi 99.7 3.9E-16 8.5E-21 147.9 17.1 168 162-360 37-208 (229)
69 COG0464 SpoVK ATPases of the A 99.7 1.9E-16 4.1E-21 167.6 16.5 173 162-361 274-460 (494)
70 PRK14964 DNA polymerase III su 99.7 7E-16 1.5E-20 158.9 20.0 190 139-361 13-223 (491)
71 PRK10733 hflB ATP-dependent me 99.7 5.7E-17 1.2E-21 175.0 12.2 247 141-414 154-423 (644)
72 KOG0732|consensus 99.7 2.3E-16 5E-21 170.5 16.7 201 138-361 264-487 (1080)
73 PRK14958 DNA polymerase III su 99.7 5.4E-16 1.2E-20 162.2 19.0 190 139-361 16-226 (509)
74 TIGR03689 pup_AAA proteasome A 99.7 1.6E-16 3.6E-21 164.1 14.8 168 139-327 182-381 (512)
75 PRK14961 DNA polymerase III su 99.7 1.5E-15 3.3E-20 153.8 21.2 189 139-361 16-226 (363)
76 COG0542 clpA ATP-binding subun 99.7 5.8E-17 1.3E-21 172.0 11.1 248 96-360 454-751 (786)
77 CHL00206 ycf2 Ycf2; Provisiona 99.7 7E-17 1.5E-21 181.7 12.0 239 161-414 1627-1905(2281)
78 PRK06645 DNA polymerase III su 99.7 1.6E-15 3.4E-20 157.6 21.2 190 139-361 21-235 (507)
79 PRK08691 DNA polymerase III su 99.7 4.9E-16 1.1E-20 163.7 17.1 190 139-361 16-226 (709)
80 PRK14957 DNA polymerase III su 99.7 1E-15 2.2E-20 160.0 18.8 188 139-360 16-225 (546)
81 PRK14952 DNA polymerase III su 99.7 1.6E-15 3.4E-20 160.0 20.2 190 139-361 13-225 (584)
82 PRK08727 hypothetical protein; 99.7 1.1E-15 2.3E-20 145.2 17.1 167 162-360 39-209 (233)
83 PRK14951 DNA polymerase III su 99.7 2.3E-15 5.1E-20 159.2 19.7 189 139-360 16-230 (618)
84 PRK07764 DNA polymerase III su 99.7 1.9E-15 4.2E-20 165.2 19.6 190 139-361 15-227 (824)
85 KOG0740|consensus 99.7 6.4E-15 1.4E-19 146.8 21.6 171 162-361 184-369 (428)
86 TIGR00602 rad24 checkpoint pro 99.7 2E-15 4.3E-20 160.0 18.9 218 139-361 84-329 (637)
87 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.5E-15 5.5E-20 142.6 17.6 181 144-361 22-207 (226)
88 PRK14959 DNA polymerase III su 99.7 2.8E-15 6E-20 157.5 18.7 188 139-360 16-225 (624)
89 PRK00440 rfc replication facto 99.7 5.6E-15 1.2E-19 147.9 20.1 195 132-361 7-209 (319)
90 COG0464 SpoVK ATPases of the A 99.7 1.5E-15 3.3E-20 160.7 16.5 164 160-351 14-190 (494)
91 PRK08084 DNA replication initi 99.7 3.7E-15 8.1E-20 141.6 17.3 169 161-360 42-214 (235)
92 PRK12402 replication factor C 99.7 6E-15 1.3E-19 148.8 19.4 204 140-360 16-231 (337)
93 PHA02544 44 clamp loader, smal 99.7 5.8E-15 1.2E-19 147.5 19.1 192 132-360 11-214 (316)
94 PRK05563 DNA polymerase III su 99.6 7.5E-15 1.6E-19 155.7 20.5 191 138-361 15-226 (559)
95 PRK14963 DNA polymerase III su 99.6 8.5E-15 1.9E-19 152.9 20.1 189 139-361 14-223 (504)
96 PRK08451 DNA polymerase III su 99.6 1.1E-14 2.3E-19 151.5 20.6 190 139-361 14-224 (535)
97 PRK05896 DNA polymerase III su 99.6 8.7E-15 1.9E-19 153.0 19.4 189 139-361 16-226 (605)
98 PRK14969 DNA polymerase III su 99.6 6.6E-15 1.4E-19 155.1 18.6 189 139-360 16-225 (527)
99 PRK14965 DNA polymerase III su 99.6 4.5E-15 9.8E-20 158.1 17.5 189 138-360 15-225 (576)
100 KOG0651|consensus 99.6 5E-16 1.1E-20 145.2 8.8 197 138-361 131-351 (388)
101 COG1224 TIP49 DNA helicase TIP 99.6 6.2E-15 1.3E-19 140.4 16.2 235 133-387 33-428 (450)
102 PRK07133 DNA polymerase III su 99.6 9E-15 1.9E-19 155.8 19.1 189 139-361 18-225 (725)
103 PRK09111 DNA polymerase III su 99.6 1.9E-14 4.2E-19 152.6 21.1 202 139-360 24-238 (598)
104 PRK08903 DnaA regulatory inact 99.6 1.3E-14 2.9E-19 137.7 16.8 163 162-360 40-204 (227)
105 TIGR00763 lon ATP-dependent pr 99.6 5.1E-15 1.1E-19 163.7 15.9 201 123-347 309-539 (775)
106 PRK05642 DNA replication initi 99.6 1.8E-14 4E-19 136.7 17.3 165 164-360 45-213 (234)
107 PF00308 Bac_DnaA: Bacterial d 99.6 3.1E-14 6.6E-19 133.6 18.0 205 134-360 3-213 (219)
108 PF00004 AAA: ATPase family as 99.6 2.8E-15 6.1E-20 129.5 10.1 116 167-309 1-131 (132)
109 TIGR02397 dnaX_nterm DNA polym 99.6 4.1E-14 8.9E-19 143.8 19.7 190 139-361 14-224 (355)
110 PRK14088 dnaA chromosomal repl 99.6 5.8E-14 1.3E-18 145.2 20.3 177 164-360 130-310 (440)
111 PRK11034 clpA ATP-dependent Cl 99.6 7.1E-15 1.5E-19 159.7 14.1 229 97-344 422-696 (758)
112 PRK06305 DNA polymerase III su 99.6 5.6E-14 1.2E-18 145.5 20.0 190 138-361 16-228 (451)
113 PRK06647 DNA polymerase III su 99.6 5.4E-14 1.2E-18 148.7 20.1 190 139-361 16-226 (563)
114 PRK14948 DNA polymerase III su 99.6 3.1E-14 6.7E-19 152.1 18.5 200 139-359 16-226 (620)
115 PRK14953 DNA polymerase III su 99.6 6.3E-14 1.4E-18 145.9 20.2 189 139-361 16-226 (486)
116 PF05673 DUF815: Protein of un 99.6 9E-14 1.9E-18 128.6 18.8 195 139-359 27-245 (249)
117 PRK14086 dnaA chromosomal repl 99.6 2.4E-14 5.2E-19 149.7 16.8 174 165-360 315-493 (617)
118 PRK14954 DNA polymerase III su 99.6 7E-14 1.5E-18 148.5 20.4 207 139-360 16-233 (620)
119 PRK00149 dnaA chromosomal repl 99.6 1.9E-14 4.1E-19 150.2 15.6 176 164-361 148-328 (450)
120 PRK14955 DNA polymerase III su 99.6 6.2E-14 1.3E-18 143.7 19.1 208 139-361 16-234 (397)
121 PRK14087 dnaA chromosomal repl 99.6 3.6E-14 7.8E-19 146.8 17.4 178 164-360 141-324 (450)
122 COG0466 Lon ATP-dependent Lon 99.6 4E-14 8.6E-19 146.6 17.0 215 122-361 311-559 (782)
123 TIGR00362 DnaA chromosomal rep 99.6 5.2E-14 1.1E-18 145.2 18.1 176 164-360 136-315 (405)
124 PRK12422 chromosomal replicati 99.6 6.9E-14 1.5E-18 144.2 18.5 173 164-360 141-318 (445)
125 PRK14970 DNA polymerase III su 99.6 7.2E-14 1.6E-18 142.4 18.5 190 139-361 17-215 (367)
126 COG2812 DnaX DNA polymerase II 99.6 8.7E-15 1.9E-19 150.2 11.4 205 139-362 16-227 (515)
127 TIGR02902 spore_lonB ATP-depen 99.6 2.4E-14 5.3E-19 151.3 14.9 205 139-361 65-310 (531)
128 PRK07940 DNA polymerase III su 99.6 9.1E-14 2E-18 140.8 18.4 191 138-357 4-215 (394)
129 PRK09112 DNA polymerase III su 99.6 8.6E-14 1.9E-18 139.1 16.7 201 139-360 23-245 (351)
130 TIGR03345 VI_ClpV1 type VI sec 99.6 2.5E-14 5.4E-19 158.5 13.8 249 95-360 528-827 (852)
131 PRK14971 DNA polymerase III su 99.6 2.1E-13 4.5E-18 145.8 20.3 188 139-359 17-226 (614)
132 KOG1051|consensus 99.6 1.3E-14 2.9E-19 156.2 11.1 200 140-360 187-407 (898)
133 KOG2228|consensus 99.6 3E-13 6.4E-18 128.3 18.8 193 128-325 15-220 (408)
134 PRK10787 DNA-binding ATP-depen 99.6 1.2E-13 2.6E-18 151.4 18.6 201 122-347 310-540 (784)
135 TIGR02974 phageshock_pspF psp 99.5 3.9E-14 8.5E-19 141.0 12.7 208 141-361 1-231 (329)
136 PF06068 TIP49: TIP49 C-termin 99.5 4E-14 8.7E-19 137.4 12.2 110 243-360 278-396 (398)
137 PRK14950 DNA polymerase III su 99.5 3.2E-13 6.9E-18 144.8 20.5 188 139-360 16-226 (585)
138 TIGR02639 ClpA ATP-dependent C 99.5 4.5E-14 9.7E-19 155.5 14.3 207 139-358 454-706 (731)
139 TIGR03346 chaperone_ClpB ATP-d 99.5 1E-13 2.2E-18 154.8 16.4 252 94-361 526-823 (852)
140 PRK05342 clpX ATP-dependent pr 99.5 1.6E-13 3.5E-18 139.6 16.3 182 141-343 73-358 (412)
141 KOG2004|consensus 99.5 1.8E-13 3.8E-18 141.0 16.1 197 123-347 400-630 (906)
142 TIGR00382 clpX endopeptidase C 99.5 1.4E-13 3E-18 139.2 14.6 199 140-359 78-380 (413)
143 TIGR00678 holB DNA polymerase 99.5 3E-13 6.5E-18 124.4 15.6 154 162-352 12-188 (188)
144 PF05621 TniB: Bacterial TniB 99.5 1.4E-13 3E-18 131.4 12.8 225 146-386 44-284 (302)
145 TIGR03015 pepcterm_ATPase puta 99.5 4.9E-13 1.1E-17 130.4 17.2 223 146-387 26-262 (269)
146 KOG0742|consensus 99.5 3.2E-13 7E-18 130.7 14.9 176 145-348 364-579 (630)
147 TIGR02903 spore_lon_C ATP-depe 99.5 9.8E-13 2.1E-17 141.2 19.3 205 138-360 153-399 (615)
148 CHL00095 clpC Clp protease ATP 99.5 3.7E-13 8E-18 149.9 16.4 233 94-342 470-760 (821)
149 PRK04132 replication factor C 99.5 4.9E-13 1.1E-17 145.4 16.6 165 166-361 566-737 (846)
150 KOG1969|consensus 99.5 6.5E-13 1.4E-17 137.3 16.4 173 164-362 326-517 (877)
151 PRK11608 pspF phage shock prot 99.5 2.5E-13 5.4E-18 135.4 13.1 211 138-361 5-238 (326)
152 TIGR02640 gas_vesic_GvpN gas v 99.5 4.5E-13 9.9E-18 129.5 14.3 197 148-362 7-239 (262)
153 PRK06620 hypothetical protein; 99.5 1.1E-12 2.4E-17 122.4 16.4 148 165-360 45-194 (214)
154 PRK07471 DNA polymerase III su 99.5 2.7E-12 5.9E-17 129.0 20.2 197 139-358 19-241 (365)
155 PRK10865 protein disaggregatio 99.5 2.4E-13 5.3E-18 151.1 13.8 250 94-359 529-824 (857)
156 COG2204 AtoC Response regulato 99.5 2.2E-13 4.8E-18 138.0 11.9 212 137-362 139-373 (464)
157 PRK09087 hypothetical protein; 99.5 9.2E-13 2E-17 124.1 14.8 155 163-359 43-199 (226)
158 KOG1942|consensus 99.5 2E-12 4.4E-17 120.1 16.0 134 242-383 295-438 (456)
159 KOG0744|consensus 99.5 6.3E-13 1.4E-17 125.2 12.7 147 165-327 178-343 (423)
160 KOG2035|consensus 99.5 4.1E-12 8.9E-17 117.4 17.3 188 141-361 15-234 (351)
161 COG0593 DnaA ATPase involved i 99.4 4.2E-12 9.1E-17 126.9 18.0 175 163-360 112-291 (408)
162 PRK05201 hslU ATP-dependent pr 99.4 2.3E-12 5E-17 128.5 15.9 118 242-360 248-403 (443)
163 PRK05022 anaerobic nitric oxid 99.4 9E-13 2E-17 139.5 13.9 212 137-361 185-418 (509)
164 TIGR01817 nifA Nif-specific re 99.4 9E-13 2E-17 140.7 14.0 212 137-361 194-426 (534)
165 TIGR00390 hslU ATP-dependent p 99.4 4.3E-12 9.3E-17 126.5 16.2 118 242-360 246-401 (441)
166 COG1221 PspF Transcriptional r 99.4 1.9E-12 4.1E-17 129.0 13.6 210 138-361 77-307 (403)
167 PF03215 Rad17: Rad17 cell cyc 99.4 5.7E-12 1.2E-16 131.6 17.7 209 140-361 20-269 (519)
168 PRK05564 DNA polymerase III su 99.4 1.1E-11 2.5E-16 123.3 19.1 184 139-356 4-191 (313)
169 KOG1970|consensus 99.4 1.4E-11 3.1E-16 123.9 19.3 215 129-360 69-320 (634)
170 PRK07399 DNA polymerase III su 99.4 1.5E-11 3.3E-16 121.3 19.3 201 139-359 4-225 (314)
171 PF01637 Arch_ATPase: Archaeal 99.4 1.5E-12 3.2E-17 123.9 11.7 198 141-352 1-231 (234)
172 COG2607 Predicted ATPase (AAA+ 99.4 2.6E-11 5.6E-16 110.1 18.3 195 140-360 61-278 (287)
173 TIGR01650 PD_CobS cobaltochela 99.4 3.4E-12 7.5E-17 124.3 13.5 179 142-341 48-251 (327)
174 cd00009 AAA The AAA+ (ATPases 99.4 7.3E-12 1.6E-16 109.7 14.4 148 142-310 1-151 (151)
175 COG3829 RocR Transcriptional r 99.4 2.1E-12 4.6E-17 130.7 11.9 214 135-361 241-477 (560)
176 PRK10820 DNA-binding transcrip 99.4 2.6E-12 5.7E-17 136.0 13.3 214 135-361 200-435 (520)
177 COG3604 FhlA Transcriptional r 99.4 1.9E-12 4.2E-17 129.2 11.1 211 138-362 222-455 (550)
178 PRK15429 formate hydrogenlyase 99.4 6.1E-12 1.3E-16 138.2 15.7 211 137-361 374-607 (686)
179 PRK05707 DNA polymerase III su 99.4 2.4E-11 5.1E-16 120.6 17.4 170 161-357 19-205 (328)
180 TIGR02329 propionate_PrpR prop 99.4 1E-11 2.2E-16 130.4 15.5 213 136-361 209-448 (526)
181 COG5271 MDN1 AAA ATPase contai 99.4 3.4E-12 7.4E-17 139.9 11.7 158 164-341 888-1060(4600)
182 COG0470 HolB ATPase involved i 99.4 7.8E-12 1.7E-16 125.4 13.7 181 141-361 3-205 (325)
183 PRK08058 DNA polymerase III su 99.3 2.9E-11 6.3E-16 120.7 16.4 186 139-357 5-206 (329)
184 PRK15424 propionate catabolism 99.3 7.3E-12 1.6E-16 131.3 12.4 215 137-361 217-463 (538)
185 PRK11388 DNA-binding transcrip 99.3 2.2E-11 4.9E-16 132.9 15.8 210 137-361 323-552 (638)
186 KOG0743|consensus 99.3 3.5E-11 7.6E-16 119.4 15.5 165 145-342 211-399 (457)
187 KOG2680|consensus 99.3 4.2E-11 9.2E-16 111.8 14.8 112 242-361 287-407 (454)
188 KOG0990|consensus 99.3 3.2E-12 6.8E-17 120.8 7.0 191 141-361 43-238 (360)
189 COG5271 MDN1 AAA ATPase contai 99.3 3E-11 6.5E-16 132.7 14.4 159 164-341 1543-1717(4600)
190 CHL00195 ycf46 Ycf46; Provisio 99.3 8.6E-11 1.9E-15 122.1 17.2 102 243-353 81-186 (489)
191 KOG2543|consensus 99.3 8.9E-11 1.9E-15 113.6 15.5 211 136-358 3-229 (438)
192 PRK06871 DNA polymerase III su 99.3 3E-10 6.4E-15 111.9 19.5 182 146-358 9-206 (325)
193 COG1219 ClpX ATP-dependent pro 99.3 1.7E-11 3.6E-16 115.6 10.2 159 165-344 98-348 (408)
194 PRK07993 DNA polymerase III su 99.3 1.9E-10 4.1E-15 114.5 18.1 181 147-358 10-207 (334)
195 PF07728 AAA_5: AAA domain (dy 99.3 2E-12 4.3E-17 112.8 3.3 122 166-301 1-139 (139)
196 PRK13531 regulatory ATPase Rav 99.3 3.3E-11 7.2E-16 122.7 12.5 203 137-361 18-262 (498)
197 PF13191 AAA_16: AAA ATPase do 99.3 1.5E-11 3.2E-16 112.7 8.6 128 140-271 1-178 (185)
198 PRK10923 glnG nitrogen regulat 99.3 2.1E-11 4.6E-16 128.6 10.8 209 139-361 138-369 (469)
199 PF13177 DNA_pol3_delta2: DNA 99.2 1.2E-10 2.5E-15 104.1 13.2 142 143-312 1-162 (162)
200 PRK08769 DNA polymerase III su 99.2 4.5E-10 9.8E-15 110.4 18.4 184 145-358 10-211 (319)
201 PF07724 AAA_2: AAA domain (Cd 99.2 2E-11 4.3E-16 109.7 8.0 110 163-287 2-131 (171)
202 PRK11331 5-methylcytosine-spec 99.2 8.2E-11 1.8E-15 118.9 12.1 167 140-319 176-367 (459)
203 KOG0745|consensus 99.2 1.6E-10 3.6E-15 113.1 12.9 175 165-360 227-505 (564)
204 COG0714 MoxR-like ATPases [Gen 99.2 6E-11 1.3E-15 118.9 10.3 162 141-325 26-203 (329)
205 TIGR02915 PEP_resp_reg putativ 99.2 6.9E-11 1.5E-15 123.9 11.1 210 139-361 139-370 (445)
206 CHL00081 chlI Mg-protoporyphyr 99.2 2E-10 4.3E-15 113.9 13.3 232 136-387 14-318 (350)
207 PRK13407 bchI magnesium chelat 99.2 1.5E-10 3.2E-15 114.6 11.7 229 139-387 8-302 (334)
208 PF00931 NB-ARC: NB-ARC domain 99.2 6.1E-10 1.3E-14 109.6 16.0 182 144-342 1-192 (287)
209 COG1222 RPT1 ATP-dependent 26S 99.2 2.3E-11 5E-16 116.8 5.2 34 479-512 176-209 (406)
210 TIGR01818 ntrC nitrogen regula 99.2 2.8E-10 6E-15 120.0 13.8 209 140-361 135-365 (463)
211 TIGR02030 BchI-ChlI magnesium 99.2 1.8E-10 3.8E-15 114.4 11.2 228 140-387 5-305 (337)
212 PHA02244 ATPase-like protein 99.2 7.5E-10 1.6E-14 109.1 15.1 154 138-313 95-263 (383)
213 PRK06090 DNA polymerase III su 99.1 2.5E-09 5.4E-14 105.1 18.5 176 146-357 10-203 (319)
214 PRK15115 response regulator Gl 99.1 1.4E-10 3.1E-15 121.4 10.4 208 140-361 135-365 (444)
215 PRK11361 acetoacetate metaboli 99.1 2.5E-10 5.5E-15 120.1 11.7 209 140-361 144-374 (457)
216 PF13401 AAA_22: AAA domain; P 99.1 5.4E-10 1.2E-14 96.2 11.7 117 164-285 4-125 (131)
217 PF00158 Sigma54_activat: Sigm 99.1 2E-10 4.4E-15 102.9 9.2 151 141-303 1-164 (168)
218 PRK06964 DNA polymerase III su 99.1 1.3E-09 2.7E-14 108.3 15.4 177 160-357 17-227 (342)
219 PF14532 Sigma54_activ_2: Sigm 99.1 9.2E-11 2E-15 102.1 6.0 135 142-311 1-138 (138)
220 COG1220 HslU ATP-dependent pro 99.1 8E-10 1.7E-14 105.2 12.6 118 242-360 249-404 (444)
221 COG3267 ExeA Type II secretory 99.1 6.3E-09 1.4E-13 96.2 17.6 176 165-345 52-238 (269)
222 KOG1051|consensus 99.1 1.2E-09 2.7E-14 118.3 13.2 185 124-326 552-786 (898)
223 TIGR02442 Cob-chelat-sub cobal 99.1 1.4E-09 2.9E-14 117.9 13.4 199 139-359 4-280 (633)
224 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.9E-14 116.7 12.8 182 160-360 12-235 (589)
225 PF07726 AAA_3: ATPase family 99.0 4.4E-10 9.6E-15 93.6 6.7 117 166-301 1-129 (131)
226 COG1239 ChlI Mg-chelatase subu 99.0 5.7E-09 1.2E-13 103.3 13.4 158 160-326 34-234 (423)
227 PRK08116 hypothetical protein; 99.0 4E-09 8.6E-14 102.0 12.0 159 147-324 96-260 (268)
228 KOG0727|consensus 99.0 7.2E-10 1.6E-14 101.3 6.2 33 479-511 180-212 (408)
229 PF05729 NACHT: NACHT domain 99.0 1.3E-08 2.9E-13 91.1 13.9 150 166-326 2-165 (166)
230 PRK10365 transcriptional regul 98.9 2.6E-09 5.7E-14 111.9 9.9 209 140-361 140-370 (441)
231 smart00382 AAA ATPases associa 98.9 5.7E-09 1.2E-13 90.4 10.4 117 164-285 2-125 (148)
232 PRK12377 putative replication 98.9 4.2E-09 9.2E-14 100.1 10.1 144 147-311 86-235 (248)
233 COG3283 TyrR Transcriptional r 98.9 7.7E-09 1.7E-13 99.2 11.3 205 139-361 204-430 (511)
234 TIGR00764 lon_rel lon-related 98.9 2.5E-09 5.4E-14 114.7 8.9 135 242-387 216-387 (608)
235 PF13173 AAA_14: AAA domain 98.9 3.8E-09 8.3E-14 90.6 8.2 125 165-316 3-127 (128)
236 PRK08699 DNA polymerase III su 98.9 2.6E-08 5.6E-13 98.9 15.2 143 161-323 18-184 (325)
237 KOG1968|consensus 98.9 5.1E-09 1.1E-13 114.6 10.4 198 141-360 322-536 (871)
238 KOG0741|consensus 98.9 1.7E-08 3.6E-13 101.5 12.8 169 164-361 538-721 (744)
239 PRK07132 DNA polymerase III su 98.9 1.2E-07 2.6E-12 92.6 17.9 172 151-357 4-186 (299)
240 PRK06835 DNA replication prote 98.9 1E-08 2.2E-13 101.6 10.3 142 151-312 172-318 (329)
241 PRK05917 DNA polymerase III su 98.9 1.2E-07 2.6E-12 91.6 17.1 148 161-349 16-175 (290)
242 PF12775 AAA_7: P-loop contain 98.9 2E-08 4.4E-13 97.2 11.9 161 148-326 19-195 (272)
243 PTZ00112 origin recognition co 98.9 6.6E-09 1.4E-13 111.1 9.1 71 446-516 738-809 (1164)
244 smart00350 MCM minichromosome 98.9 1.4E-08 3E-13 107.5 11.4 168 139-324 203-400 (509)
245 PRK07952 DNA replication prote 98.8 2.2E-08 4.7E-13 95.0 10.6 145 147-311 84-234 (244)
246 PF14516 AAA_35: AAA-like doma 98.8 5E-07 1.1E-11 90.5 20.6 202 141-356 13-243 (331)
247 PF05496 RuvB_N: Holliday junc 98.8 4.8E-09 1E-13 96.1 5.4 55 462-516 23-78 (233)
248 PRK07276 DNA polymerase III su 98.8 2.3E-07 5E-12 89.9 17.2 173 152-357 11-199 (290)
249 TIGR02928 orc1/cdc6 family rep 98.8 1.2E-08 2.5E-13 104.2 7.7 67 451-517 3-69 (365)
250 PRK06921 hypothetical protein; 98.8 5E-08 1.1E-12 94.3 11.5 128 163-311 116-254 (266)
251 PRK05818 DNA polymerase III su 98.8 1.7E-07 3.8E-12 88.4 14.6 162 163-358 6-193 (261)
252 PRK08181 transposase; Validate 98.8 2E-08 4.4E-13 96.6 8.6 102 164-286 106-209 (269)
253 KOG0729|consensus 98.8 7.4E-09 1.6E-13 95.5 5.2 48 464-511 178-234 (435)
254 COG3899 Predicted ATPase [Gene 98.8 2.5E-07 5.4E-12 103.2 18.3 208 141-360 2-265 (849)
255 PRK08939 primosomal protein Dn 98.8 5.3E-08 1.2E-12 95.8 11.5 123 143-285 135-260 (306)
256 KOG0737|consensus 98.8 8E-09 1.7E-13 100.1 5.1 67 440-515 88-154 (386)
257 KOG0652|consensus 98.7 1E-08 2.3E-13 94.2 5.4 49 464-512 172-229 (424)
258 PRK06526 transposase; Provisio 98.7 1.4E-08 3.1E-13 97.2 6.0 102 164-286 98-201 (254)
259 PRK13765 ATP-dependent proteas 98.7 5.1E-08 1.1E-12 104.4 10.8 118 242-361 225-378 (637)
260 COG3284 AcoR Transcriptional a 98.7 3.7E-08 8E-13 102.0 9.4 206 142-362 316-539 (606)
261 COG1474 CDC6 Cdc6-related prot 98.7 2.3E-08 4.9E-13 100.6 7.4 69 450-518 4-72 (366)
262 COG1223 Predicted ATPase (AAA+ 98.7 9.3E-09 2E-13 94.7 4.0 53 461-513 119-176 (368)
263 COG1484 DnaC DNA replication p 98.7 8.7E-08 1.9E-12 91.8 10.3 120 144-286 88-209 (254)
264 KOG0726|consensus 98.7 1.5E-08 3.3E-13 94.6 4.8 31 481-511 212-242 (440)
265 PF01078 Mg_chelatase: Magnesi 98.7 3E-08 6.5E-13 90.3 6.5 135 139-285 3-158 (206)
266 PF10923 DUF2791: P-loop Domai 98.7 3.9E-06 8.5E-11 85.0 22.0 217 141-361 27-399 (416)
267 PTZ00202 tuzin; Provisional 98.6 2.4E-06 5.3E-11 85.6 18.6 167 138-325 261-435 (550)
268 PRK00411 cdc6 cell division co 98.6 5.9E-08 1.3E-12 100.1 7.8 67 449-515 16-82 (394)
269 KOG0738|consensus 98.6 2.1E-08 4.4E-13 97.4 3.9 62 441-513 209-270 (491)
270 PF01695 IstB_IS21: IstB-like 98.6 6.2E-08 1.3E-12 87.8 6.8 102 163-285 46-149 (178)
271 PRK04841 transcriptional regul 98.6 1.5E-06 3.3E-11 99.5 19.8 188 137-346 12-219 (903)
272 TIGR00368 Mg chelatase-related 98.6 2.5E-07 5.4E-12 96.8 11.9 159 140-316 193-396 (499)
273 PF07693 KAP_NTPase: KAP famil 98.6 4.4E-06 9.5E-11 83.8 20.6 180 146-327 3-266 (325)
274 smart00763 AAA_PrkA PrkA AAA d 98.6 8.2E-07 1.8E-11 87.9 14.2 199 140-340 52-347 (361)
275 PRK09183 transposase/IS protei 98.6 1.8E-07 3.9E-12 90.1 8.8 104 163-286 101-206 (259)
276 PRK03992 proteasome-activating 98.6 3.9E-08 8.4E-13 100.6 4.1 53 462-514 130-191 (389)
277 TIGR03689 pup_AAA proteasome A 98.6 6.4E-08 1.4E-12 100.7 5.2 51 465-515 184-243 (512)
278 KOG0728|consensus 98.5 1E-07 2.2E-12 87.3 5.5 33 479-511 172-204 (404)
279 KOG0731|consensus 98.5 5.9E-08 1.3E-12 103.4 4.5 41 472-512 323-368 (774)
280 PLN03210 Resistant to P. syrin 98.5 3.5E-06 7.5E-11 98.3 19.5 169 137-326 182-366 (1153)
281 KOG0734|consensus 98.5 6.6E-08 1.4E-12 97.4 4.3 42 471-512 315-361 (752)
282 PHA00729 NTP-binding motif con 98.5 9.9E-07 2.2E-11 81.8 11.7 114 162-322 15-138 (226)
283 PF12774 AAA_6: Hydrolytic ATP 98.5 4.9E-07 1.1E-11 85.1 9.8 179 149-361 19-225 (231)
284 COG0488 Uup ATPase components 98.5 8.9E-07 1.9E-11 93.0 12.7 33 483-515 343-375 (530)
285 PTZ00111 DNA replication licen 98.5 3.7E-07 8E-12 99.6 8.9 171 139-325 450-658 (915)
286 KOG2170|consensus 98.5 3.8E-06 8.3E-11 79.5 14.4 134 140-285 83-224 (344)
287 PTZ00454 26S protease regulato 98.5 1.8E-07 4E-12 95.3 5.9 50 464-513 146-204 (398)
288 PRK13406 bchD magnesium chelat 98.5 1.1E-06 2.4E-11 93.6 11.5 176 163-359 24-226 (584)
289 COG2255 RuvB Holliday junction 98.5 1.9E-07 4.1E-12 87.5 5.0 55 463-517 26-81 (332)
290 PTZ00361 26 proteosome regulat 98.4 2.3E-07 4.9E-12 95.3 5.9 50 465-514 185-243 (438)
291 TIGR02655 circ_KaiC circadian 98.4 1.3E-06 2.8E-11 92.1 11.4 29 487-515 262-290 (484)
292 KOG0989|consensus 98.4 2.4E-07 5.2E-12 87.7 5.1 48 463-514 36-83 (346)
293 TIGR01242 26Sp45 26S proteasom 98.4 2.3E-07 5E-12 94.4 5.1 52 463-514 122-182 (364)
294 PRK06851 hypothetical protein; 98.4 7.3E-06 1.6E-10 81.9 15.5 40 163-205 29-68 (367)
295 PLN00020 ribulose bisphosphate 98.4 2.5E-07 5.4E-12 90.8 4.9 31 483-513 143-173 (413)
296 PRK09862 putative ATP-dependen 98.4 1.9E-06 4.1E-11 89.9 11.6 140 162-314 208-391 (506)
297 COG4650 RtcR Sigma54-dependent 98.4 1.6E-06 3.4E-11 81.4 9.1 124 140-269 185-308 (531)
298 COG2256 MGS1 ATPase related to 98.3 1.9E-07 4.1E-12 91.7 2.1 50 465-515 26-75 (436)
299 PF03969 AFG1_ATPase: AFG1-lik 98.3 5.1E-07 1.1E-11 90.7 5.1 106 162-286 60-168 (362)
300 PRK09302 circadian clock prote 98.3 4.2E-06 9.1E-11 89.1 12.1 42 162-205 29-70 (509)
301 KOG0651|consensus 98.3 3.3E-07 7.1E-12 86.8 3.2 35 479-513 157-191 (388)
302 KOG0739|consensus 98.3 4.5E-07 9.7E-12 85.3 3.8 62 440-513 129-191 (439)
303 PF10236 DAP3: Mitochondrial r 98.3 9.6E-05 2.1E-09 73.1 20.5 198 150-353 9-307 (309)
304 PRK00080 ruvB Holliday junctio 98.3 8.1E-07 1.8E-11 89.1 5.8 52 463-514 25-77 (328)
305 COG1618 Predicted nucleotide k 98.3 1.7E-05 3.6E-10 68.4 12.6 27 165-191 6-32 (179)
306 TIGR00635 ruvB Holliday juncti 98.3 1.1E-06 2.5E-11 87.2 6.3 53 463-515 4-57 (305)
307 TIGR02881 spore_V_K stage V sp 98.3 1.3E-06 2.7E-11 84.7 6.3 28 487-514 41-68 (261)
308 PRK12723 flagellar biosynthesi 98.3 1.5E-05 3.3E-10 80.7 14.0 148 163-315 173-326 (388)
309 cd01120 RecA-like_NTPases RecA 98.3 9.6E-06 2.1E-10 72.1 11.3 116 167-287 2-138 (165)
310 KOG0744|consensus 98.2 4.5E-07 9.8E-12 86.2 2.2 32 489-520 178-209 (423)
311 TIGR01241 FtsH_fam ATP-depende 98.2 1.7E-06 3.7E-11 91.7 5.7 30 484-513 84-113 (495)
312 PRK00771 signal recognition pa 98.2 8.1E-05 1.8E-09 76.7 17.7 128 126-257 49-189 (437)
313 COG2909 MalT ATP-dependent tra 98.2 4.1E-05 9E-10 82.1 15.7 196 138-351 18-232 (894)
314 PF13604 AAA_30: AAA domain; P 98.2 4.4E-06 9.4E-11 77.2 7.5 104 164-281 18-128 (196)
315 PRK10636 putative ABC transpor 98.2 8.9E-06 1.9E-10 88.9 10.8 30 483-512 333-362 (638)
316 smart00763 AAA_PrkA PrkA AAA d 98.2 3.4E-06 7.4E-11 83.6 6.6 51 464-514 52-104 (361)
317 PRK04195 replication factor C 98.2 2.6E-06 5.6E-11 89.9 6.0 50 464-513 15-64 (482)
318 PRK15064 ABC transporter ATP-b 98.1 1.7E-05 3.6E-10 85.1 12.2 30 483-512 340-369 (530)
319 PF00910 RNA_helicase: RNA hel 98.1 9.5E-06 2.1E-10 67.0 8.0 26 167-192 1-26 (107)
320 CHL00206 ycf2 Ycf2; Provisiona 98.1 1.6E-06 3.4E-11 99.9 4.3 33 481-513 1623-1655(2281)
321 KOG0478|consensus 98.1 3.9E-06 8.5E-11 87.3 6.6 138 165-322 463-624 (804)
322 PRK06581 DNA polymerase III su 98.1 0.00022 4.8E-09 66.3 17.2 158 162-341 13-176 (263)
323 PRK13695 putative NTPase; Prov 98.1 1.5E-05 3.4E-10 72.1 9.6 148 166-324 2-172 (174)
324 PF10443 RNA12: RNA12 protein; 98.1 0.00027 5.8E-09 71.2 18.9 168 144-327 1-232 (431)
325 TIGR00390 hslU ATP-dependent p 98.1 3.6E-06 7.9E-11 84.6 5.7 53 463-515 12-74 (441)
326 TIGR02880 cbbX_cfxQ probable R 98.1 5.2E-06 1.1E-10 81.2 6.6 28 487-514 57-84 (284)
327 PRK04296 thymidine kinase; Pro 98.1 1E-05 2.2E-10 74.4 8.1 109 165-287 3-117 (190)
328 CHL00181 cbbX CbbX; Provisiona 98.1 5.4E-06 1.2E-10 81.1 6.6 28 487-514 58-85 (287)
329 PF03266 NTPase_1: NTPase; In 98.1 2.1E-06 4.6E-11 76.9 3.2 70 242-316 94-163 (168)
330 CHL00176 ftsH cell division pr 98.1 4.3E-06 9.4E-11 90.1 6.1 30 484-513 212-241 (638)
331 COG1241 MCM2 Predicted ATPase 98.1 7.1E-06 1.5E-10 87.6 7.4 156 139-314 286-473 (682)
332 COG1123 ATPase components of v 98.1 1.7E-05 3.6E-10 82.3 9.8 45 242-287 171-216 (539)
333 PRK14962 DNA polymerase III su 98.1 4.1E-06 8.9E-11 87.4 5.3 49 463-514 14-62 (472)
334 KOG1808|consensus 98.1 7.1E-06 1.5E-10 95.2 7.6 147 166-326 442-601 (1856)
335 PLN03025 replication factor C 98.1 4.8E-06 1E-10 83.2 5.5 46 464-513 14-59 (319)
336 KOG0927|consensus 98.1 4.3E-05 9.3E-10 78.0 12.1 45 242-290 238-283 (614)
337 PRK05201 hslU ATP-dependent pr 98.1 4.6E-06 1E-10 83.9 5.3 53 463-515 15-77 (443)
338 PRK11147 ABC transporter ATPas 98.1 3.1E-05 6.8E-10 84.7 12.1 273 162-509 27-366 (635)
339 PHA02774 E1; Provisional 98.0 2E-05 4.4E-10 82.1 9.9 123 151-310 420-554 (613)
340 cd01128 rho_factor Transcripti 98.0 6.1E-06 1.3E-10 78.7 5.5 96 162-258 14-118 (249)
341 PRK13531 regulatory ATPase Rav 98.0 5.3E-06 1.1E-10 85.2 5.2 46 463-514 20-65 (498)
342 KOG2004|consensus 98.0 5.9E-06 1.3E-10 86.5 5.5 66 447-517 400-467 (906)
343 PRK05342 clpX ATP-dependent pr 98.0 4.9E-06 1.1E-10 85.2 4.8 51 464-514 72-134 (412)
344 PRK10536 hypothetical protein; 98.0 3.1E-05 6.8E-10 73.1 9.5 56 140-203 56-111 (262)
345 KOG0742|consensus 98.0 2.7E-06 6E-11 83.3 2.5 27 485-511 381-407 (630)
346 COG1224 TIP49 DNA helicase TIP 98.0 9.2E-06 2E-10 78.6 5.8 55 459-514 35-91 (450)
347 KOG0480|consensus 98.0 2E-05 4.2E-10 81.6 8.5 172 139-325 345-543 (764)
348 COG0466 Lon ATP-dependent Lon 98.0 7.9E-06 1.7E-10 85.9 5.5 66 446-516 311-378 (782)
349 TIGR00763 lon ATP-dependent pr 98.0 8.2E-06 1.8E-10 91.0 6.1 63 448-515 310-374 (775)
350 COG0465 HflB ATP-dependent Zn 98.0 5.8E-06 1.3E-10 86.8 4.5 49 464-512 151-207 (596)
351 PRK14974 cell division protein 98.0 0.00034 7.3E-09 69.6 16.5 89 163-257 139-236 (336)
352 TIGR00382 clpX endopeptidase C 98.0 8.6E-06 1.9E-10 82.9 5.2 51 463-513 77-141 (413)
353 PF06309 Torsin: Torsin; Inte 98.0 0.00011 2.4E-09 61.4 10.8 69 140-208 26-98 (127)
354 COG0606 Predicted ATPase with 98.0 2.1E-06 4.5E-11 86.6 0.7 44 140-189 180-223 (490)
355 cd01124 KaiC KaiC is a circadi 98.0 4.7E-05 1E-09 69.7 9.6 35 167-204 2-36 (187)
356 cd00009 AAA The AAA+ (ATPases 97.9 1.4E-05 3E-10 69.5 5.6 42 468-513 3-44 (151)
357 KOG4658|consensus 97.9 0.00022 4.8E-09 79.9 16.1 203 142-363 161-369 (889)
358 KOG1514|consensus 97.9 1.5E-05 3.2E-10 83.5 6.3 72 447-518 380-452 (767)
359 PRK14722 flhF flagellar biosyn 97.9 5.1E-05 1.1E-09 76.2 9.8 92 163-256 136-228 (374)
360 PRK08939 primosomal protein Dn 97.9 1.7E-05 3.7E-10 78.1 6.3 47 468-514 136-182 (306)
361 TIGR03719 ABC_ABC_ChvD ATP-bin 97.9 8.9E-05 1.9E-09 79.9 12.3 29 162-190 29-57 (552)
362 PRK14700 recombination factor 97.9 4E-05 8.6E-10 73.6 8.4 81 274-361 6-93 (300)
363 PRK12377 putative replication 97.9 2E-05 4.4E-10 75.0 6.4 28 488-515 101-128 (248)
364 PLN03073 ABC transporter F fam 97.9 6.2E-05 1.3E-09 82.9 11.1 30 483-512 530-559 (718)
365 PF12780 AAA_8: P-loop contain 97.9 0.00012 2.7E-09 70.5 11.9 170 141-340 10-226 (268)
366 COG4088 Predicted nucleotide k 97.9 0.00016 3.4E-09 65.0 11.4 101 165-285 2-111 (261)
367 PRK14956 DNA polymerase III su 97.9 1.1E-05 2.5E-10 83.0 5.0 49 463-514 18-66 (484)
368 PRK12402 replication factor C 97.9 1.3E-05 2.9E-10 80.7 5.4 47 464-514 16-62 (337)
369 PRK13342 recombination factor 97.9 6.6E-06 1.4E-10 85.1 3.1 47 464-514 13-62 (413)
370 KOG0732|consensus 97.9 7.4E-06 1.6E-10 90.2 3.5 68 441-518 262-329 (1080)
371 PRK14961 DNA polymerase III su 97.9 1.7E-05 3.6E-10 80.6 5.9 48 463-513 16-63 (363)
372 PF06068 TIP49: TIP49 C-termin 97.9 1.5E-05 3.2E-10 78.4 5.2 52 462-514 23-76 (398)
373 PRK06893 DNA replication initi 97.9 2E-05 4.3E-10 74.7 5.8 26 490-515 41-66 (229)
374 COG1419 FlhF Flagellar GTP-bin 97.9 0.00012 2.5E-09 73.2 11.1 146 163-314 202-351 (407)
375 COG1485 Predicted ATPase [Gene 97.9 1.4E-05 3.1E-10 77.7 4.6 107 161-286 62-171 (367)
376 KOG0743|consensus 97.9 1.2E-05 2.7E-10 80.5 4.2 44 470-513 212-260 (457)
377 PRK14960 DNA polymerase III su 97.9 1.8E-05 4E-10 83.9 5.7 48 463-513 15-62 (702)
378 PF05673 DUF815: Protein of un 97.9 3E-05 6.6E-10 72.4 6.5 52 463-514 27-78 (249)
379 PF06309 Torsin: Torsin; Inte 97.8 3.6E-05 7.8E-10 64.3 6.1 52 464-515 26-80 (127)
380 PF00493 MCM: MCM2/3/5 family 97.8 2.7E-06 5.8E-11 85.1 -0.8 146 165-327 58-224 (331)
381 PRK13341 recombination factor 97.8 1.3E-05 2.8E-10 87.6 4.4 50 464-514 29-78 (725)
382 TIGR03420 DnaA_homol_Hda DnaA 97.8 2.5E-05 5.4E-10 73.9 5.8 30 485-514 35-64 (226)
383 PRK08084 DNA replication initi 97.8 2.7E-05 5.9E-10 74.1 5.9 28 487-514 44-71 (235)
384 COG1484 DnaC DNA replication p 97.8 2.8E-05 6E-10 74.6 5.9 27 487-513 104-130 (254)
385 PRK06645 DNA polymerase III su 97.8 2E-05 4.4E-10 82.6 5.2 49 463-514 21-69 (507)
386 TIGR00767 rho transcription te 97.8 3.7E-05 8E-10 77.2 6.7 98 161-258 165-270 (415)
387 PRK14955 DNA polymerase III su 97.8 2.5E-05 5.3E-10 80.4 5.7 49 463-514 16-64 (397)
388 PRK14963 DNA polymerase III su 97.8 2.1E-05 4.6E-10 82.8 5.2 49 463-514 14-62 (504)
389 KOG0740|consensus 97.8 1.1E-05 2.3E-10 81.4 2.9 30 485-514 183-212 (428)
390 TIGR01618 phage_P_loop phage n 97.8 7.4E-05 1.6E-09 69.6 8.2 24 162-185 10-33 (220)
391 COG3854 SpoIIIAA ncharacterize 97.8 0.00014 3E-09 66.5 9.6 100 165-286 138-253 (308)
392 PRK08181 transposase; Validate 97.8 3.9E-05 8.4E-10 74.0 6.5 29 487-515 105-133 (269)
393 PRK14958 DNA polymerase III su 97.8 2.3E-05 4.9E-10 82.7 5.3 49 463-514 16-64 (509)
394 PRK14964 DNA polymerase III su 97.8 2.4E-05 5.2E-10 81.4 5.4 48 463-513 13-60 (491)
395 COG4619 ABC-type uncharacteriz 97.8 0.00015 3.3E-09 63.0 9.3 29 162-190 27-55 (223)
396 PRK05703 flhF flagellar biosyn 97.8 0.00029 6.3E-09 72.8 13.2 102 164-268 221-326 (424)
397 COG1373 Predicted ATPase (AAA+ 97.8 0.00029 6.3E-09 72.3 13.2 123 166-318 39-161 (398)
398 PRK11331 5-methylcytosine-spec 97.8 3.2E-05 7E-10 78.8 6.0 42 467-514 179-220 (459)
399 PRK07940 DNA polymerase III su 97.8 3E-05 6.5E-10 79.0 5.8 52 463-514 5-62 (394)
400 PRK06835 DNA replication prote 97.8 3.6E-05 7.9E-10 76.5 6.2 28 488-515 183-210 (329)
401 PRK08116 hypothetical protein; 97.8 4E-05 8.6E-10 74.3 6.1 29 487-515 113-141 (268)
402 TIGR03499 FlhF flagellar biosy 97.8 0.00027 5.8E-09 69.1 11.8 41 164-205 194-234 (282)
403 TIGR02688 conserved hypothetic 97.8 0.00014 3.1E-09 73.2 9.9 102 135-268 184-285 (449)
404 PF01695 IstB_IS21: IstB-like 97.8 2.5E-05 5.4E-10 70.8 4.1 29 486-514 45-73 (178)
405 PRK13407 bchI magnesium chelat 97.8 3.3E-05 7.1E-10 76.8 5.3 46 463-512 8-53 (334)
406 PF09848 DUF2075: Uncharacteri 97.8 0.0001 2.2E-09 74.8 8.9 23 166-188 3-25 (352)
407 PRK14949 DNA polymerase III su 97.8 2.5E-05 5.4E-10 85.5 4.7 50 463-515 16-65 (944)
408 PHA02244 ATPase-like protein 97.7 3.2E-05 7E-10 76.7 5.0 29 487-515 118-146 (383)
409 COG1124 DppF ABC-type dipeptid 97.7 0.00012 2.7E-09 67.7 8.4 127 162-289 31-205 (252)
410 PRK12608 transcription termina 97.7 0.00016 3.4E-09 72.2 9.8 96 162-258 131-235 (380)
411 PF05970 PIF1: PIF1-like helic 97.7 7.5E-05 1.6E-09 75.9 7.7 127 151-284 9-149 (364)
412 PRK06526 transposase; Provisio 97.7 2.4E-05 5.2E-10 75.0 3.8 28 487-514 97-124 (254)
413 KOG2028|consensus 97.7 2.2E-05 4.7E-10 76.1 3.3 34 479-512 153-186 (554)
414 PRK07952 DNA replication prote 97.7 6.4E-05 1.4E-09 71.4 6.4 27 489-515 100-126 (244)
415 PRK14957 DNA polymerase III su 97.7 4.2E-05 9.1E-10 80.8 5.5 49 463-514 16-64 (546)
416 PF13207 AAA_17: AAA domain; P 97.7 4.7E-05 1E-09 64.3 4.8 32 166-203 1-32 (121)
417 PRK08533 flagellar accessory p 97.7 0.0004 8.6E-09 65.8 11.6 114 163-285 23-162 (230)
418 PHA02544 44 clamp loader, smal 97.7 4.5E-05 9.7E-10 76.2 5.3 48 463-513 21-68 (316)
419 PRK05896 DNA polymerase III su 97.7 4.7E-05 1E-09 80.7 5.6 48 463-513 16-63 (605)
420 PRK09376 rho transcription ter 97.7 0.00012 2.5E-09 73.3 8.0 96 162-258 167-271 (416)
421 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00017 3.7E-09 79.9 10.2 103 165-281 369-474 (744)
422 PRK00440 rfc replication facto 97.7 5.1E-05 1.1E-09 75.8 5.6 46 464-513 18-63 (319)
423 PRK08691 DNA polymerase III su 97.7 4.1E-05 9E-10 82.0 5.1 49 463-514 16-64 (709)
424 PRK11889 flhF flagellar biosyn 97.7 0.0016 3.5E-08 65.3 15.8 144 164-315 241-391 (436)
425 KOG1942|consensus 97.7 5.9E-05 1.3E-09 71.1 5.3 51 461-513 36-89 (456)
426 KOG0991|consensus 97.7 5.9E-05 1.3E-09 68.9 5.1 47 464-514 28-74 (333)
427 PRK06067 flagellar accessory p 97.7 0.00036 7.8E-09 66.4 10.8 41 162-205 23-63 (234)
428 COG4178 ABC-type uncharacteriz 97.7 0.00011 2.3E-09 77.5 7.6 44 242-288 532-576 (604)
429 TIGR01650 PD_CobS cobaltochela 97.7 6E-05 1.3E-09 74.0 5.4 30 487-516 63-92 (327)
430 PRK10875 recD exonuclease V su 97.7 0.00024 5.1E-09 76.5 10.3 115 165-283 168-301 (615)
431 TIGR02397 dnaX_nterm DNA polym 97.7 6.5E-05 1.4E-09 76.3 5.8 49 463-514 14-62 (355)
432 PF04665 Pox_A32: Poxvirus A32 97.6 0.0014 3E-08 61.8 14.1 145 165-324 14-170 (241)
433 PF07034 ORC3_N: Origin recogn 97.6 0.0024 5.2E-08 63.9 16.8 213 145-361 55-319 (330)
434 PRK15455 PrkA family serine pr 97.6 7.7E-05 1.7E-09 77.8 6.1 52 463-514 76-129 (644)
435 PF03215 Rad17: Rad17 cell cyc 97.6 7.2E-05 1.6E-09 78.8 6.0 47 469-515 25-72 (519)
436 PRK06921 hypothetical protein; 97.6 4.4E-05 9.5E-10 73.8 4.1 29 487-515 116-144 (266)
437 cd01121 Sms Sms (bacterial rad 97.6 0.00025 5.5E-09 71.7 9.7 87 163-257 81-172 (372)
438 PRK13889 conjugal transfer rel 97.6 0.00034 7.3E-09 78.8 11.5 104 165-283 363-470 (988)
439 COG2842 Uncharacterized ATPase 97.6 0.00059 1.3E-08 65.2 11.5 189 151-361 83-277 (297)
440 PRK14952 DNA polymerase III su 97.6 5.3E-05 1.2E-09 80.8 5.0 48 463-513 13-60 (584)
441 PRK12724 flagellar biosynthesi 97.6 0.0037 8.1E-08 63.5 17.8 145 164-314 223-372 (432)
442 KOG0482|consensus 97.6 0.00023 5.1E-09 71.9 9.0 206 140-361 343-616 (721)
443 PRK14969 DNA polymerase III su 97.6 6E-05 1.3E-09 80.0 5.1 49 463-514 16-64 (527)
444 TIGR02237 recomb_radB DNA repa 97.6 0.00027 5.8E-09 66.0 9.0 40 163-205 11-50 (209)
445 PF02562 PhoH: PhoH-like prote 97.6 0.00017 3.8E-09 66.3 7.3 27 165-191 20-46 (205)
446 PRK14970 DNA polymerase III su 97.6 8.1E-05 1.8E-09 76.0 5.7 49 463-514 17-65 (367)
447 PRK07003 DNA polymerase III su 97.6 7.6E-05 1.6E-09 80.3 5.5 49 463-514 16-64 (830)
448 PRK12727 flagellar biosynthesi 97.6 0.0012 2.5E-08 68.9 14.0 93 163-257 349-442 (559)
449 KOG0477|consensus 97.6 9.6E-05 2.1E-09 76.3 6.0 146 140-304 450-626 (854)
450 COG0606 Predicted ATPase with 97.6 4.5E-05 9.7E-10 77.2 3.5 41 464-510 180-220 (490)
451 TIGR00602 rad24 checkpoint pro 97.6 8.9E-05 1.9E-09 79.6 6.0 54 463-516 84-138 (637)
452 PRK14954 DNA polymerase III su 97.6 7.8E-05 1.7E-09 80.1 5.5 49 463-514 16-64 (620)
453 PRK06305 DNA polymerase III su 97.6 8.3E-05 1.8E-09 77.5 5.6 49 463-514 17-65 (451)
454 COG1219 ClpX ATP-dependent pro 97.6 4.2E-05 9.1E-10 73.1 3.0 27 487-513 96-122 (408)
455 PRK08903 DnaA regulatory inact 97.6 0.00012 2.6E-09 69.3 6.3 29 486-514 40-68 (227)
456 PRK05800 cobU adenosylcobinami 97.6 0.00032 6.9E-09 63.0 8.6 112 166-286 3-126 (170)
457 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00046 1E-08 60.8 9.4 115 165-286 3-138 (159)
458 PRK09111 DNA polymerase III su 97.6 8.1E-05 1.7E-09 79.8 5.4 49 463-514 24-72 (598)
459 TIGR02012 tigrfam_recA protein 97.6 0.00059 1.3E-08 67.3 10.9 90 163-257 54-147 (321)
460 PRK07994 DNA polymerase III su 97.6 8.6E-05 1.9E-09 79.8 5.5 50 463-515 16-65 (647)
461 PRK12323 DNA polymerase III su 97.6 8E-05 1.7E-09 79.0 5.1 49 463-514 16-64 (700)
462 PF00448 SRP54: SRP54-type pro 97.6 0.00026 5.6E-09 65.2 7.9 145 164-314 1-153 (196)
463 PRK14951 DNA polymerase III su 97.6 8.3E-05 1.8E-09 79.7 5.3 48 463-513 16-63 (618)
464 COG0714 MoxR-like ATPases [Gen 97.6 7E-05 1.5E-09 75.2 4.5 45 465-515 26-70 (329)
465 PRK09361 radB DNA repair and r 97.6 0.00052 1.1E-08 64.9 10.2 39 163-204 22-60 (225)
466 KOG3347|consensus 97.6 8.4E-05 1.8E-09 63.2 4.1 36 164-207 7-42 (176)
467 COG2884 FtsE Predicted ATPase 97.6 0.00065 1.4E-08 60.5 9.7 44 242-287 154-198 (223)
468 TIGR00362 DnaA chromosomal rep 97.5 0.00017 3.7E-09 74.6 7.2 27 489-515 137-163 (405)
469 KOG0062|consensus 97.5 0.00062 1.3E-08 69.4 10.8 30 484-513 386-415 (582)
470 PRK06620 hypothetical protein; 97.5 5.6E-05 1.2E-09 70.7 3.2 24 489-512 45-68 (214)
471 PRK05563 DNA polymerase III su 97.5 0.0001 2.2E-09 78.9 5.5 49 463-514 16-64 (559)
472 PRK07133 DNA polymerase III su 97.5 0.00012 2.6E-09 79.2 6.0 49 463-514 18-66 (725)
473 COG0541 Ffh Signal recognition 97.5 0.0096 2.1E-07 60.0 18.8 215 126-358 53-338 (451)
474 TIGR01425 SRP54_euk signal rec 97.5 0.0041 8.8E-08 63.8 16.7 148 163-317 99-255 (429)
475 cd03115 SRP The signal recogni 97.5 0.0013 2.9E-08 59.3 12.0 38 166-206 2-39 (173)
476 PRK14088 dnaA chromosomal repl 97.5 0.00016 3.5E-09 75.2 6.7 28 489-516 131-158 (440)
477 KOG3928|consensus 97.5 0.01 2.3E-07 59.0 18.7 49 304-355 404-456 (461)
478 cd00984 DnaB_C DnaB helicase C 97.5 0.0016 3.6E-08 62.2 13.2 52 163-218 12-63 (242)
479 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00058 1.3E-08 61.3 9.3 117 162-287 25-149 (166)
480 cd00046 DEXDc DEAD-like helica 97.5 0.00045 9.7E-09 59.1 8.3 26 166-191 2-27 (144)
481 TIGR01448 recD_rel helicase, p 97.5 0.00039 8.5E-09 76.8 9.7 107 165-284 339-453 (720)
482 PLN02674 adenylate kinase 97.5 0.0014 3.1E-08 62.1 12.1 83 162-254 29-119 (244)
483 PRK11823 DNA repair protein Ra 97.5 0.00045 9.8E-09 71.9 9.5 87 163-257 79-170 (446)
484 COG1116 TauB ABC-type nitrate/ 97.5 0.00052 1.1E-08 64.1 8.8 31 162-192 27-57 (248)
485 PRK06647 DNA polymerase III su 97.5 0.00013 2.9E-09 77.8 5.7 49 463-514 16-64 (563)
486 cd03216 ABC_Carb_Monos_I This 97.5 0.00022 4.8E-09 63.8 6.2 114 162-287 24-143 (163)
487 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.0012 2.7E-08 63.7 11.7 39 163-204 35-73 (259)
488 PRK14950 DNA polymerase III su 97.5 0.00012 2.7E-09 79.0 5.3 48 463-513 16-63 (585)
489 TIGR01447 recD exodeoxyribonuc 97.5 0.00045 9.8E-09 74.2 9.5 27 165-191 161-187 (586)
490 cd00983 recA RecA is a bacter 97.5 0.0011 2.3E-08 65.6 11.4 90 163-257 54-147 (325)
491 PRK05973 replicative DNA helic 97.5 0.0011 2.4E-08 62.6 10.8 40 163-205 63-102 (237)
492 TIGR02858 spore_III_AA stage I 97.5 0.00026 5.7E-09 68.4 6.8 109 164-287 111-230 (270)
493 PRK08727 hypothetical protein; 97.5 0.00018 3.8E-09 68.4 5.6 28 488-515 41-68 (233)
494 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00024 5.3E-09 60.5 5.8 40 472-513 8-47 (133)
495 TIGR02902 spore_lonB ATP-depen 97.5 0.00017 3.6E-09 76.9 5.9 48 464-515 66-113 (531)
496 PRK10787 DNA-binding ATP-depen 97.5 0.00017 3.6E-09 80.0 6.1 66 446-516 310-377 (784)
497 TIGR00764 lon_rel lon-related 97.5 0.00013 2.9E-09 78.6 5.1 47 463-515 18-64 (608)
498 PRK00149 dnaA chromosomal repl 97.4 0.00012 2.5E-09 76.9 4.4 27 489-515 149-175 (450)
499 PRK14953 DNA polymerase III su 97.4 0.00017 3.7E-09 75.7 5.7 48 463-513 16-63 (486)
500 COG1066 Sms Predicted ATP-depe 97.4 0.0012 2.5E-08 65.8 11.0 88 163-259 92-184 (456)
No 1
>KOG0733|consensus
Probab=100.00 E-value=4.3e-38 Score=314.14 Aligned_cols=334 Identities=16% Similarity=0.242 Sum_probs=227.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
...+-|.++.+.+|++.+..... -.++.++|||||||||||.||+++|.++ +++|+.|++.++
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApei--- 259 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEI--- 259 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhh---
Confidence 34688999999999998876321 1467889999999999999999999999 999999999876
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChH-----------HHHHHHHhcCCC---
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQD-----------VIYNILEYLNKP--- 273 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~-----------~L~~ll~~~~~~--- 273 (520)
++.+.|+ .++.++.+|.++ ..|||+||||||.+.+.++. .|+..|+.+...
T Consensus 260 -------vSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 260 -------VSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -------hcccCcc------cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 5677777 789999999998 88999999999999998643 356666665433
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
..+|+|||+||+++.++..|. -..||. ++|.+.-|+..++.+||+..++.+....+-.++.||++++||.|....|
T Consensus 327 g~~VlVIgATnRPDslDpaLR--RaGRFd-rEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~A- 402 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALR--RAGRFD-REICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMA- 402 (802)
T ss_pred CCCeEEEecCCCCcccCHHHh--cccccc-ceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHH-
Confidence 467999999999998887663 347897 4599999999999999999999886666888999999999999987776
Q ss_pred HHHHhhhccCCCC-ceeccc-------ccch--hhhhccc--cccccc-cCCCccc--ccccccccCCc----cccc---
Q psy17062 354 NHYTNEKKSKSKY-WDWVSS-------SSDE--EEKEENH--VIGKLD-TAPVENL--RPRSLKSTKKS----QHAT--- 411 (520)
Q Consensus 354 ~~l~~a~~~~~~~-~~~~a~-------~~~~--~~~~~~~--v~~a~~-~~~~~~~--~~~~~~~~~~~----~~~~--- 411 (520)
+|..|+.-+.++ ...... ..+. ..+.++. +..... ....+.. -...+....++ ....
T Consensus 403 -L~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i 481 (802)
T KOG0733|consen 403 -LCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSI 481 (802)
T ss_pred -HHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhcccee
Confidence 455554321111 000000 0000 0000000 000000 0000000 00000000000 0000
Q ss_pred ---CCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCC
Q psy17062 412 ---PSSHKPNVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTT 488 (520)
Q Consensus 412 ---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 488 (520)
.+...-....|+..++.+..+| ++.|.++++++..|..|.+.++.. +.+ .-+...++...|
T Consensus 482 ~~eDF~~Al~~iQPSakREGF~tVP------dVtW~dIGaL~~vR~eL~~aI~~P--iK~--------pd~~k~lGi~~P 545 (802)
T KOG0733|consen 482 KFEDFEEALSKIQPSAKREGFATVP------DVTWDDIGALEEVRLELNMAILAP--IKR--------PDLFKALGIDAP 545 (802)
T ss_pred cHHHHHHHHHhcCcchhcccceecC------CCChhhcccHHHHHHHHHHHHhhh--ccC--------HHHHHHhCCCCC
Confidence 0000012344556666666666 678899999999999999866522 111 113456788899
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.|||||||||||||+||||||+|-.-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccC
Confidence 99999999999999999999998543
No 2
>KOG1514|consensus
Probab=100.00 E-value=5.7e-34 Score=290.21 Aligned_cols=265 Identities=44% Similarity=0.646 Sum_probs=237.2
Q ss_pred CchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----Ce
Q psy17062 122 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KF 196 (520)
Q Consensus 122 ~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~ 196 (520)
...+..++..++...+|..|+||+.++.+|..++...+.. +.+.++||+|.||||||.+++.+.+.|...... .+
T Consensus 379 ~S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f 458 (767)
T KOG1514|consen 379 ASELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF 458 (767)
T ss_pred hhHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc
Confidence 4788899999999999999999999999999999999887 666799999999999999999999999855422 78
Q ss_pred EEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCC
Q psy17062 197 VYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKP 273 (520)
Q Consensus 197 ~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~ 273 (520)
.+++||++.+..+.++|..|+.++.|+...+....+.|...|... ..++||+|||+|.|....|++||++|+|....
T Consensus 459 ~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 459 DYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLK 538 (767)
T ss_pred cEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCC
Confidence 999999999999999999999999999999999999999999843 78999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
+++++||+++|+++++++.+..++.+|++..+|.|.||+..++.+|+..+|.....|..++++.+|+.++..+||+|+|+
T Consensus 539 ~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRral 618 (767)
T KOG1514|consen 539 NSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRAL 618 (767)
T ss_pred CCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999989999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHhhhccCCCCceecccccchhhhhccccccc
Q psy17062 354 NHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGK 387 (520)
Q Consensus 354 ~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a 387 (520)
++|++|++.+..... .........++..++.+|
T Consensus 619 dic~RA~Eia~~~~~-~~k~~~~q~v~~~~v~~A 651 (767)
T KOG1514|consen 619 DICRRAAEIAEERNV-KGKLAVSQLVGILHVMEA 651 (767)
T ss_pred HHHHHHHHHhhhhcc-cccccccceeehHHHHHH
Confidence 999999985444332 112222334455555555
No 3
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=271.65 Aligned_cols=240 Identities=35% Similarity=0.606 Sum_probs=204.0
Q ss_pred CchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCC-eEEEEcCCCCcHHHHHHHHHHHHHHHhCC----Ce
Q psy17062 122 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTG-CMYISGVPGTGKTATVHAVMRKLKQEIGD----KF 196 (520)
Q Consensus 122 ~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~-~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~ 196 (520)
...+..++..|+.+++|+.|+||++|+++|..+|..++.+..++ +++|+|+||||||++++.++++|...... .+
T Consensus 738 ~~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f 817 (1164)
T PTZ00112 738 TDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSF 817 (1164)
T ss_pred CChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 45667899999999999999999999999999999988765554 46799999999999999999998654311 37
Q ss_pred EEEEEccccCCChHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcC
Q psy17062 197 VYVEMNALSIPEPKRAYSRILELLLNVDAPP-EQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLN 271 (520)
Q Consensus 197 ~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~-~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~ 271 (520)
.+++|||..+.++..+|..|+.++.+..... ....+.+..+|... ....||||||||.|....+++|+.+++|..
T Consensus 818 ~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~ 897 (1164)
T PTZ00112 818 NVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT 897 (1164)
T ss_pred eEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh
Confidence 8899999999999999999999996654221 12334455555432 456799999999999888999999999987
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r 350 (520)
...+.++|||++|..++... +.+++.+||...+|.|+||+.+++.+||+.++... ..++++++++||+.++...||+|
T Consensus 898 ~s~SKLiLIGISNdlDLper-LdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPER-LIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred ccCCeEEEEEecCchhcchh-hhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 66789999999999888774 67899999988789999999999999999999864 57899999999999988999999
Q ss_pred HHHHHHHhhhcc
Q psy17062 351 FCANHYTNEKKS 362 (520)
Q Consensus 351 ~al~~l~~a~~~ 362 (520)
+|+++|+.|++.
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 999999999873
No 4
>KOG0730|consensus
Probab=99.97 E-value=4e-30 Score=261.13 Aligned_cols=289 Identities=18% Similarity=0.254 Sum_probs=207.2
Q ss_pred CCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
..+.|-..++..+...+.-.+ ....+.++|+|||||+|||.++++++++. +..++.+++.++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~pel--- 254 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPEL--- 254 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHH---
Confidence 345566677777666654432 23567889999999999999999999998 889999999875
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CC-ceEEEEcCCccccccC----------hHHHHHHHHhcCCCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HG-PCVLLIDELDYLCNKR----------QDVIYNILEYLNKPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~-~~vLiiDEid~l~~~~----------~~~L~~ll~~~~~~~~~ 276 (520)
+.++.|+ ....++..|..+ .. |.+|||||+|.+.+++ ...|+.+++++. ..++
T Consensus 255 -------i~k~~gE------te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-~~~~ 320 (693)
T KOG0730|consen 255 -------ISKFPGE------TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-PDAK 320 (693)
T ss_pred -------HHhcccc------hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-CcCc
Confidence 5777777 677888888877 44 9999999999999842 124677777665 5689
Q ss_pred EEEEEEEcCCCCchhhhhhhhh-ccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVS-SRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~-sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
+++|+++|+++.++.. ++ .||. +.+.+..|+..++.+|++.+++.+...++..+..+|..++||.|....+ +
T Consensus 321 vivl~atnrp~sld~a----lRRgRfd-~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~--l 393 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPA----LRRGRFD-REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAA--L 393 (693)
T ss_pred EEEEEecCCccccChh----hhcCCCc-ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHH--H
Confidence 9999999999876644 33 5887 4599999999999999999999987778899999999999998876553 6
Q ss_pred HHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCCCC
Q psy17062 356 YTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTPTL 435 (520)
Q Consensus 356 l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 435 (520)
|..|+..+.+. +..++..+... ..|+...+.+.- .
T Consensus 394 ~~ea~~~~~r~-------------~~~~~~~A~~~-----------------------------i~psa~Re~~ve---~ 428 (693)
T KOG0730|consen 394 CREASLQATRR-------------TLEIFQEALMG-----------------------------IRPSALREILVE---M 428 (693)
T ss_pred HHHHHHHHhhh-------------hHHHHHHHHhc-----------------------------CCchhhhheecc---C
Confidence 66665421111 11111111100 011112221111 1
Q ss_pred CCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 436 PKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
| .+.|.++++++..+..|+.+.. +.-.....+..++++|++|||||||||||||++|||||++-+-+
T Consensus 429 p---~v~W~dIGGlE~lK~elq~~V~----------~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 429 P---NVSWDDIGGLEELKRELQQAVE----------WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred C---CCChhhccCHHHHHHHHHHHHh----------hhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 2 3466788888888888775332 12222223456778999999999999999999999999986544
No 5
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=246.66 Aligned_cols=250 Identities=25% Similarity=0.416 Sum_probs=220.3
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
.++.+.++++|+.+++|+.|++++..+|.....+..+.+++|+|+||||||++++.+++++..... +..++|+||....
T Consensus 6 n~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~ 84 (366)
T COG1474 6 NKDVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELR 84 (366)
T ss_pred cccccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCC
Confidence 445678899999999999999999999999999999999999999999999999999999987654 3448999999999
Q ss_pred ChHHHHHHHHHHHhcCC---CChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 208 EPKRAYSRILELLLNVD---APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~---~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
+++.++..|++++...+ .+.....+.+.+.+.......||+|||+|.|....++.|++++.+......++.+|+++|
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n 164 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSN 164 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEec
Confidence 99999999999885333 234566777777777778899999999999999988999999998876678899999999
Q ss_pred CCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 285 TMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 285 ~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.++.+ .+++++.++++...|.|+||+.+|+..||..+.+.. ..+++++++.+|...+...||+|.|+++|+.|++
T Consensus 165 ~~~~~~-~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 165 DDKFLD-YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred cHHHHH-HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 988744 578999999998889999999999999999999864 7889999999999999999999999999999999
Q ss_pred cCCCCceecccccchhhhhccccccc
Q psy17062 362 SKSKYWDWVSSSSDEEEKEENHVIGK 387 (520)
Q Consensus 362 ~~~~~~~~~a~~~~~~~~~~~~v~~a 387 (520)
+|...+...++++++..+
T Consensus 244 --------iAe~~~~~~v~~~~v~~a 261 (366)
T COG1474 244 --------IAEREGSRKVSEDHVREA 261 (366)
T ss_pred --------HHHhhCCCCcCHHHHHHH
Confidence 466677777888877766
No 6
>KOG2227|consensus
Probab=99.95 E-value=4.5e-27 Score=230.10 Aligned_cols=235 Identities=29% Similarity=0.434 Sum_probs=201.5
Q ss_pred HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 126 QLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 126 ~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.+..+.+.....|..++||+.++..+..|+..++....++++|++|.||+|||.+...+...+..... .+..+++||.+
T Consensus 137 ~~~~~~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-~~~~v~inc~s 215 (529)
T KOG2227|consen 137 EQRSESLLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-SPVTVYINCTS 215 (529)
T ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-cceeEEEeecc
Confidence 34455556678899999999999999999999999999999999999999999999999988877654 46779999999
Q ss_pred CCChHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 206 IPEPKRAYSRILELLLNVDAP---PEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~---~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
+..+..+|..|+..+.....+ ..+..+.+...+.....+.||++||+|+|....+.+|+.+|+|......++++||+
T Consensus 216 l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 216 LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeee
Confidence 999999999999888422221 23345566666666677999999999999999999999999999989999999999
Q ss_pred EcCCCCchhhhhhhhhccC--CcceEEeCCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 283 ANTMDLPERTLKGKVSSRM--GLTRLMFKPYDHHQLQEIVQNRLKNN--NCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~--~~~~i~~~~~~~~~~~~Il~~~l~~~--~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
+|..++.+++ .+++..|+ ....++|+||+.+++.+||..++..+ ..+-+.+++.+|+.+.+.+||+|+|+++|++
T Consensus 296 ANslDlTdR~-LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 296 ANSLDLTDRF-LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhHHHHH-hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 9999988875 45677754 44589999999999999999999887 4556789999999999999999999999999
Q ss_pred hhcc
Q psy17062 359 EKKS 362 (520)
Q Consensus 359 a~~~ 362 (520)
|.+.
T Consensus 375 aiEI 378 (529)
T KOG2227|consen 375 AIEI 378 (529)
T ss_pred HHHH
Confidence 8764
No 7
>KOG0736|consensus
Probab=99.95 E-value=8.2e-28 Score=246.60 Aligned_cols=302 Identities=19% Similarity=0.184 Sum_probs=187.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcC-----CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQS-----TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSR 215 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~-----~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~ 215 (520)
.++++..+..+.+++......+ ....+||+|+||||||++++++|+++ +.+++.++|.++.+.
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~------ 470 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAE------ 470 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhc------
Confidence 3566777777777776643332 34579999999999999999999999 999999999887421
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh--------HHHHHHHH--hcCCCCCcEEEEEEE
Q psy17062 216 ILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ--------DVIYNILE--YLNKPKSRLIILCIA 283 (520)
Q Consensus 216 i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~--------~~L~~ll~--~~~~~~~~v~vI~~t 283 (520)
+.......+...|..+ ..|+||||-++|.+..+.. ..+..++. .......++++|+++
T Consensus 471 ----------s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 471 ----------SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred ----------ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 1223455566666666 7899999999999975432 12333333 123356788999999
Q ss_pred cCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCC-CCCHHHHHHHHHhhhcc
Q psy17062 284 NTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPT-SRSEIFCANHYTNEKKS 362 (520)
Q Consensus 284 n~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~-~G~~r~al~~l~~a~~~ 362 (520)
++.+.+. ..+.+-|. ++|.++.++++++.+||++++.....-.+..++.++.++.++ .|++.....-+..++..
T Consensus 541 ~s~~~lp----~~i~~~f~-~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~ 615 (953)
T KOG0736|consen 541 SSIEDLP----ADIQSLFL-HEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKT 615 (953)
T ss_pred cccccCC----HHHHHhhh-hhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHH
Confidence 8877543 34444443 559999999999999999999987666778888999997774 33433322222111110
Q ss_pred CC--CCceeccccc-------chhhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCC
Q psy17062 363 KS--KYWDWVSSSS-------DEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTP 433 (520)
Q Consensus 363 ~~--~~~~~~a~~~-------~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 433 (520)
.. +.+....+.. ....++++++..+..+. .+.... -..+|
T Consensus 616 ~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~---------~~~fs~----------------------aiGAP 664 (953)
T KOG0736|consen 616 RIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL---------QKEFSD----------------------AIGAP 664 (953)
T ss_pred HHHhhcccccchhccccccccccceecHHHHHHHHHHH---------HHhhhh----------------------hcCCC
Confidence 00 0000000000 00112222222221100 000000 12468
Q ss_pred CCCCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 434 TLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++|++.| .+++++++++..+..++- -.+.+. .++ ..+.++++|||||||||||||++|||||+|+.
T Consensus 665 KIPnV~W---dDVGGLeevK~eIldTIq-lPL~hp--------eLf--ssglrkRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 665 KIPNVSW---DDVGGLEEVKTEILDTIQ-LPLKHP--------ELF--SSGLRKRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred CCCccch---hcccCHHHHHHHHHHHhc-CcccCh--------hhh--hccccccceeEEECCCCCchHHHHHHHHhhce
Confidence 8888865 677777777776655331 111111 001 12356789999999999999999999999986
Q ss_pred H
Q psy17062 514 Q 514 (520)
Q Consensus 514 ~ 514 (520)
=
T Consensus 731 L 731 (953)
T KOG0736|consen 731 L 731 (953)
T ss_pred e
Confidence 3
No 8
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.95 E-value=1.9e-27 Score=260.71 Aligned_cols=300 Identities=12% Similarity=0.138 Sum_probs=202.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~~ 214 (520)
+.++||++++.++...|... ..++++|+||||||||++++.+++.+.....+ +..++.+++..+..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~----~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a------ 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR----KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA------ 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh------
Confidence 46899999999988887553 44679999999999999999999998654221 45677777654421
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC---------hHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR---------QDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~---------~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
..++.|+ ..+.+...+..+ ..++||||||+|.+.... ++.|...+. .+.+.+||+|
T Consensus 252 --~~~~~g~------~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-----~g~i~~IgaT 318 (731)
T TIGR02639 252 --GTKYRGD------FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-----SGKLRCIGST 318 (731)
T ss_pred --hccccch------HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-----CCCeEEEEec
Confidence 0122232 566777777654 458999999999997531 334555444 6789999999
Q ss_pred cCCCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHH
Q psy17062 284 NTMDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCAN 354 (520)
Q Consensus 284 n~~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~ 354 (520)
|..+... ...++.+.+||+. |.+++|+.+++.+||+.....+ ..++++++..++....+|-++ +++|++
T Consensus 319 t~~e~~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQK--IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCce--EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 9755432 2247889999964 9999999999999999766542 568999999999999888877 899999
Q ss_pred HHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCCC
Q psy17062 355 HYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTPT 434 (520)
Q Consensus 355 ~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 434 (520)
+++.++...... ........++.+++..... ..+..|
T Consensus 397 lld~a~a~~~~~----~~~~~~~~v~~~~i~~~i~--------------------------------------~~tgiP- 433 (731)
T TIGR02639 397 VIDEAGASFRLR----PKAKKKANVSVKDIENVVA--------------------------------------KMAHIP- 433 (731)
T ss_pred HHHHhhhhhhcC----cccccccccCHHHHHHHHH--------------------------------------HHhCCC-
Confidence 999876521100 0000001111111111100 000011
Q ss_pred CCCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc-----CCCCCcEEEEcCCCCcHHHHHHHHH
Q psy17062 435 LPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISGVPGTGKTATVHAVM 509 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~iLLyGPpGtGKT~lAkalA 509 (520)
... ........+......|. ..+.|++..+..+...+..... .+|.+.+||+||||||||++|++||
T Consensus 434 --~~~-~~~~~~~~l~~l~~~l~-----~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la 505 (731)
T TIGR02639 434 --VKT-VSVDDREKLKNLEKNLK-----AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLA 505 (731)
T ss_pred --hhh-hhhHHHHHHHHHHHHHh-----cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHH
Confidence 000 00011223444444444 4788999999999988776432 3455679999999999999999999
Q ss_pred HHHHH
Q psy17062 510 RKLKQ 514 (520)
Q Consensus 510 ~~l~~ 514 (520)
+.+..
T Consensus 506 ~~l~~ 510 (731)
T TIGR02639 506 EALGV 510 (731)
T ss_pred HHhcC
Confidence 98843
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.95 E-value=5.7e-26 Score=231.65 Aligned_cols=252 Identities=21% Similarity=0.356 Sum_probs=199.1
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---CeEEEEEccc
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD---KFVYVEMNAL 204 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~---~~~~i~v~~~ 204 (520)
.++.|+.+++|+.++||++|+++|..+|.....+..+++++|+||||||||++++.+++.+...... .+.+++++|.
T Consensus 4 ~~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 4 NRDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred ChhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3567899999999999999999999999998777777899999999999999999999988654221 2789999999
Q ss_pred cCCChHHHHHHHHHHHh--cCCC-----ChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhc---CCCC
Q psy17062 205 SIPEPKRAYSRILELLL--NVDA-----PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYL---NKPK 274 (520)
Q Consensus 205 ~~~~~~~~~~~i~~~l~--g~~~-----~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~---~~~~ 274 (520)
...++..++..|+.++. |... +.......+...+.....+.||+|||+|.+....++.|+.++++. ....
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 99999999999999986 3322 223334444444444467889999999999866677889988873 2234
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN---NNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~---~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
.++.+|+++|..+..+ .+.+++.+||....|.|+||+.+++.+|++.+++. ...+++++++.++..+....|++|.
T Consensus 164 ~~v~lI~i~n~~~~~~-~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 164 AKVGVIGISNDLKFRE-NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CeEEEEEEECCcchHh-hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 7899999999987654 35778889997667999999999999999999873 2468899999999887778899999
Q ss_pred HHHHHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 352 CANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 352 al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
++++|+.|+.. +...+...++.+++..+.
T Consensus 243 al~~l~~a~~~--------a~~~~~~~it~~~v~~a~ 271 (365)
T TIGR02928 243 AIDLLRVAGEI--------AEREGAERVTEDHVEKAQ 271 (365)
T ss_pred HHHHHHHHHHH--------HHHcCCCCCCHHHHHHHH
Confidence 99999998763 333333456666665543
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.94 E-value=2.3e-25 Score=229.45 Aligned_cols=255 Identities=21% Similarity=0.330 Sum_probs=204.3
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 125 LQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 125 ~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
+...+..+..+++|+.++||++++++|..+|.....+..+.+++|+|+||+|||++++.+++.+..... ++.+++++|.
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~-~~~~v~in~~ 94 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV-KVVYVYINCQ 94 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEECC
Confidence 444667788899999999999999999999998877777788999999999999999999999876532 5889999999
Q ss_pred cCCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHcCCCCceEEEEcCCcccc-ccChHHHHHHHHhcCC-CCCcE
Q psy17062 205 SIPEPKRAYSRILELLLNVDA-----PPEQAKAMLERHFTRPHGPCVLLIDELDYLC-NKRQDVIYNILEYLNK-PKSRL 277 (520)
Q Consensus 205 ~~~~~~~~~~~i~~~l~g~~~-----~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~-~~~~~~L~~ll~~~~~-~~~~v 277 (520)
...++..++..++.++.+... ........+...+.....+.||+|||+|.+. ...++.|+.++++... ...++
T Consensus 95 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 95 IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 999999999999999976321 2344555555555554678999999999998 4456788888876532 23488
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
.+|+++|..+.... +.+++.+|+....|.|++|+.+++.+|++.+++.. ..+++++++.+++.+.+..|++|.+++
T Consensus 175 ~vI~i~~~~~~~~~-l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 175 GVIGISSDLTFLYI-LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEECCcchhhh-cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 99999998876664 57788888877779999999999999999998643 468999999999998878999999999
Q ss_pred HHHhhhccCCCCceecccccchhhhhccccccccc
Q psy17062 355 HYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLD 389 (520)
Q Consensus 355 ~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~ 389 (520)
+|..|+.. +...+...++.+++..+..
T Consensus 254 ll~~a~~~--------a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 254 LLRRAGLI--------AEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred HHHHHHHH--------HHHcCCCCcCHHHHHHHHH
Confidence 99988763 3333444566666655543
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=4.4e-26 Score=250.75 Aligned_cols=191 Identities=18% Similarity=0.282 Sum_probs=139.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+++++++.+++...+. -..+.++||+||||||||++++++++++ +..++.+++..+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 4445688999999999988764322 1456789999999999999999999998 888999988765
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcCCC
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLNKP 273 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~~~ 273 (520)
. ..+.|. ....+...|..+ ..|+||||||+|.+...+. +.|+.+++... .
T Consensus 249 ~----------~~~~g~------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-~ 311 (733)
T TIGR01243 249 M----------SKYYGE------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-G 311 (733)
T ss_pred h----------cccccH------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-c
Confidence 3 222222 344555566554 5789999999999976532 23555555442 3
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
...++||+++|..+.++..+.. ..||.. .+.|+.|+.+++.+||+.++.......+..++.++..++++.|....+
T Consensus 312 ~~~vivI~atn~~~~ld~al~r--~gRfd~-~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRR--PGRFDR-EIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhC--chhccE-EEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 5678999999988755433211 247764 499999999999999998887765556777899999999988865443
No 12
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-26 Score=216.99 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=179.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
..+-|-++|+++|.+.+.--+. -.+|.++|||||||||||.||+++|++. +..|+.+.++++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSEl--- 221 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSEL--- 221 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHH---
Confidence 3578899999999998765433 2578899999999999999999999998 899999999886
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--CCCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL--NKPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~--~~~~ 274 (520)
+.++.|+ ....++.+|..+ +.|+||||||||.+...+ |..|+++|..+ ....
T Consensus 222 -------VqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 222 -------VQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred -------HHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 7899888 566778888877 899999999999998764 45688888766 2457
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
.++.||++||+.+.++.++.++ .||+ +.|.||.|+.+.+.+||+-+.+.+....+..++.||+.+.+++|...++
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRP--GR~D-RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka-- 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRP--GRFD-RKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA-- 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCC--Cccc-ceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH--
Confidence 8999999999999888776544 6786 3499999999999999999999988888899999999999999988775
Q ss_pred HHHhhhccCCCCceecccccchhhhhcccc
Q psy17062 355 HYTNEKKSKSKYWDWVSSSSDEEEKEENHV 384 (520)
Q Consensus 355 ~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v 384 (520)
+|.+|+..+.+..+......+.....+.++
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 788888755554444444555544444444
No 13
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.93 E-value=8.3e-26 Score=244.25 Aligned_cols=308 Identities=12% Similarity=0.135 Sum_probs=190.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
.+.++||+++++++...|... ...++||+||||||||++|+.+++.+... +.+....++.-+.... .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~----~~~n~LLvGppGvGKT~lae~la~~i~~~---~vP~~l~~~~~~~l~~---~--- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRR----RKNNPLLVGESGVGKTAIAEGLAWRIVQG---DVPEVMADCTIYSLDI---G--- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhcc----CCCCeEEECCCCCCHHHHHHHHHHHHHhc---CCCchhcCCeEEeccH---H---
Confidence 345899999999999988763 44778999999999999999999887543 2333333332211000 0
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----hHHHHHHHHhcCCCCCcEEEEEEEcCCCCch
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----QDVIYNILEYLNKPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~ 290 (520)
..+.|.. ......+.+..++... ..+.||||||+|.+.... +..+.++|.... ..+.+.+|++|+..+...
T Consensus 252 ~llaG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 252 SLLAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred HHhcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-hCCCeEEEecCChHHHHH
Confidence 0111111 0112444455444432 467899999999996532 222333333221 267899999998865432
Q ss_pred -hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCC---CHHHHHHHHHhhhc
Q psy17062 291 -RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSR---SEIFCANHYTNEKK 361 (520)
Q Consensus 291 -~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G---~~r~al~~l~~a~~ 361 (520)
...+++|.+||+. |.+++|+.+++..||+.....+ ..++++++..++....+|-. -+.+|+++|+.|+.
T Consensus 330 ~~~~D~AL~rRFq~--I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 330 IFEKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 1247889999964 9999999999999999876554 67899999998888777544 37899999999875
Q ss_pred cCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCCCCCCccCC
Q psy17062 362 SKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTPTLPKRLTA 441 (520)
Q Consensus 362 ~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 441 (520)
.... .........++...+.. +.......| ....
T Consensus 408 ~~~~----~~~~~~~~~v~~~~i~~--------------------------------------v~~~~tgip---~~~~- 441 (758)
T PRK11034 408 RARL----MPVSKRKKTVNVADIES--------------------------------------VVARIARIP---EKSV- 441 (758)
T ss_pred hhcc----CcccccccccChhhHHH--------------------------------------HHHHHhCCC---hhhh-
Confidence 2110 00000000000000000 000000011 1000
Q ss_pred CCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc-----CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 442 PLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.......+...... +...+.|++..+..+...+..... .+|.+.+||+||||||||.+|+++|..+.
T Consensus 442 ~~~~~~~l~~l~~~-----L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 442 SQSDRDTLKNLGDR-----LKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred hhhHHHHHHHHHHH-----hcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 00001112223333 345789999999999998886543 45567899999999999999999999884
No 14
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.93 E-value=1.1e-25 Score=249.35 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=148.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~ 213 (520)
.+.++||+++++++.+.|... ..++++|+||||||||++|+.+|+.+.....+ +..++.+++..+..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~----~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a----- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR----TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA----- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc----ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-----
Confidence 345899999999999998653 44679999999999999999999998643211 46777777654321
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------hHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------QDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
|... ..+..+.+..++... ..++||||||+|.+.... .+.|...+. .+.+.+|++|
T Consensus 249 --------g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-----rg~l~~IgaT 314 (821)
T CHL00095 249 --------GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-----RGELQCIGAT 314 (821)
T ss_pred --------cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-----CCCcEEEEeC
Confidence 1111 123555666666544 468999999999998642 234444444 6789999999
Q ss_pred cCCCCchh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHH
Q psy17062 284 NTMDLPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCAN 354 (520)
Q Consensus 284 n~~~~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~ 354 (520)
+..+.... ..++.+.+||.. |.++.++.++...|++...... ..++++++..++....+|.++ +++|++
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~--I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQP--VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceE--EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 87654321 236788899965 9999999999999988655432 458999999999999988887 999999
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
+++.++.
T Consensus 393 lld~a~a 399 (821)
T CHL00095 393 LLDEAGS 399 (821)
T ss_pred HHHHHHH
Confidence 9999875
No 15
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=1.7e-25 Score=246.49 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=145.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~~ 214 (520)
+.++||+.+++++...|.+. ..++++|+||||||||++|+.+++.+...... +..++.++...+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~----~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag----- 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR----RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG----- 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC----CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc-----
Confidence 46799999999999888553 44679999999999999999999998643211 345565655443210
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCcccccc-----ChH---HHHHHHHhcCCCCCcEEEEEEE
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNK-----RQD---VIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~-----~~~---~L~~ll~~~~~~~~~v~vI~~t 283 (520)
..+ .....+.+...+... ..++||||||+|.+... .++ +|...+. .+.+.+||+|
T Consensus 258 ---~~~------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-----~G~l~~IgaT 323 (852)
T TIGR03345 258 ---ASV------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-----RGELRTIAAT 323 (852)
T ss_pred ---ccc------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-----CCCeEEEEec
Confidence 011 122445555555543 46899999999999852 233 3555544 7789999999
Q ss_pred cCCCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHH
Q psy17062 284 NTMDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCAN 354 (520)
Q Consensus 284 n~~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~ 354 (520)
+..+... ...+++|.+||+. |.|++|+.+++..||+.....+ ..++++++..++....+|.++ +.+|++
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~--i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAId 401 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQV--VKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVS 401 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeE--EEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHH
Confidence 8765432 2357899999964 9999999999999976555432 568999999999999988776 889999
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
+++.|+.
T Consensus 402 lldea~a 408 (852)
T TIGR03345 402 LLDTACA 408 (852)
T ss_pred HHHHHHH
Confidence 9998864
No 16
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-26 Score=241.38 Aligned_cols=342 Identities=13% Similarity=0.127 Sum_probs=214.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~ 213 (520)
-+-++||++|++++.+.|.+. ..+|.+|.|+||||||+++..+|..+.....+ +..++.++...+..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR----~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA----- 239 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRR----TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA----- 239 (786)
T ss_pred CCCCcChHHHHHHHHHHHhcc----CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-----
Confidence 345799999999999999774 33678899999999999999999998766443 56677777665532
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh---------HHHHHHHHhcCCCCCcEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ---------DVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~---------~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
..++.|+ +++++..++.+. ..+.||||||+|.+..... ++|...|. .+.+-+||+
T Consensus 240 ---GakyRGe------FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-----RGeL~~IGA 305 (786)
T COG0542 240 ---GAKYRGE------FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-----RGELRCIGA 305 (786)
T ss_pred ---cccccCc------HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-----cCCeEEEEe
Confidence 3445555 777777776665 3489999999999987532 23444444 778999999
Q ss_pred EcCCCCchhh-hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHH
Q psy17062 283 ANTMDLPERT-LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCA 353 (520)
Q Consensus 283 tn~~~~~~~~-l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al 353 (520)
|+..+.-.+. -+.+|.+||+. |.+..|+.++...||+..-..+ +.++++++..++.+..+|-.+ +.+|+
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~--V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQK--VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCce--eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 9876654322 36889999976 9999999999999999776654 688999999999998887665 78999
Q ss_pred HHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccc---cccc-c---ccCCcccccCCCCCC--CCCCCCC
Q psy17062 354 NHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLR---PRSL-K---STKKSQHATPSSHKP--NVSTPSS 424 (520)
Q Consensus 354 ~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~~-~---~~~~~~~~~~~~~~~--~~~~~~~ 424 (520)
++++.|+........ .......+..+......+........ .... . ...+ ...+...+. ...+...
T Consensus 384 DLiDeA~a~~~l~~~---~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~ 458 (786)
T COG0542 384 DLLDEAGARVRLEID---KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKE--GRIPELEKELEAEVDEDD 458 (786)
T ss_pred HHHHHHHHHHHhccc---CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh--hhhhhHHHHHhhccCHHH
Confidence 999998853211100 00111111111110000000000000 0000 0 0000 000000000 0000000
Q ss_pred cccccccCCCCCCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc-----CCCCCcEEEEcCCCC
Q psy17062 425 IKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISGVPGT 499 (520)
Q Consensus 425 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~iLLyGPpGt 499 (520)
+... +..-..+|......-+..+-.-....+..++.|++.++..+...+..... .+|.+.+||.||+|+
T Consensus 459 Ia~v------v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGV 532 (786)
T COG0542 459 IAEV------VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGV 532 (786)
T ss_pred HHHH------HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcc
Confidence 0000 00001112221111122222222234456899999999999999988655 678888999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q psy17062 500 GKTATVHAVMRKLKQE 515 (520)
Q Consensus 500 GKT~lAkalA~~l~~~ 515 (520)
|||.|||+||..|...
T Consensus 533 GKTELAkaLA~~Lfg~ 548 (786)
T COG0542 533 GKTELAKALAEALFGD 548 (786)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 9999999999999743
No 17
>KOG0734|consensus
Probab=99.92 E-value=6.1e-25 Score=217.08 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=195.7
Q ss_pred CCCCchH---HHHHHHHHHHHHH-----hhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCRE---AEFQSIHRFLLSK-----ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~---~ei~~l~~~L~~~-----~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
+.+-|.+ .|+++|.++|.+- +.++-|.++||+||||||||.||+++|.+. +++|++..++++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccccchh---
Confidence 3345554 5677777787763 234667899999999999999999999998 9999999998874
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh--------HHHHHHHHhc--CCCCCcEE
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ--------DVIYNILEYL--NKPKSRLI 278 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~--------~~L~~ll~~~--~~~~~~v~ 278 (520)
..++|. ...+++.+|..+ +.||||||||||.+..++. ..|.++|-.+ ...+.+|+
T Consensus 375 -------Em~VGv------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 375 -------EMFVGV------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred -------hhhhcc------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 455565 567788888887 8899999999999988642 3466766544 23466899
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
||++||.++.++..|.++ .||+.+ |.+|.|+..-+.+||+.++.+.....+.++..||+-+.|++|.... +++.+
T Consensus 442 vigATNfpe~LD~AL~RP--GRFD~~-v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa--NlVNq 516 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRP--GRFDRH-VTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA--NLVNQ 516 (752)
T ss_pred EEeccCChhhhhHHhcCC--Ccccee-EecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH--HHHHH
Confidence 999999999888777554 788754 9999999999999999999997777788999999988888886544 45555
Q ss_pred hhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCC
Q psy17062 359 EKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHK 416 (520)
Q Consensus 359 a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (520)
||-.+...........+.+..-+++++++.+......+..+.+.+||+.+|+......
T Consensus 517 AAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yT 574 (752)
T KOG0734|consen 517 AALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYT 574 (752)
T ss_pred HHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeec
Confidence 5543333333334555666677888999988888888888899999999998876654
No 18
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.91 E-value=1.9e-23 Score=232.28 Aligned_cols=202 Identities=14% Similarity=0.102 Sum_probs=146.3
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~~ 214 (520)
+.++||+.+++++...|.+ +..++++|+||||||||++++.+++.+.....+ +.+++.++...+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a------ 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA------ 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh------
Confidence 4589999999999998865 344778999999999999999999988543211 55667766544321
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccC----hHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKR----QDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~----~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
...+.|+ ..+.+...+... ..+.||||||+|.+.... .....++|... ...+.+.+||+|+..+
T Consensus 243 --~~~~~g~------~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~-l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 243 --GAKYRGE------FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA-LARGELHCIGATTLDE 313 (852)
T ss_pred --cchhhhh------HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh-hhcCceEEEEeCcHHH
Confidence 0112222 444555555443 468999999999997521 11122333222 2367899999998765
Q ss_pred Cch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHHHHHh
Q psy17062 288 LPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCANHYTN 358 (520)
Q Consensus 288 ~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~~l~~ 358 (520)
... ...++++.+||+. |.++.|+.+++..||+.....+ ..+.++++..++....+|..+ +.+|+++++.
T Consensus 314 ~r~~~~~d~al~rRf~~--i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~ 391 (852)
T TIGR03346 314 YRKYIEKDAALERRFQP--VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDE 391 (852)
T ss_pred HHHHhhcCHHHHhcCCE--EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHH
Confidence 432 1257889999965 9999999999999999876654 557899999999999998888 9999999999
Q ss_pred hhc
Q psy17062 359 EKK 361 (520)
Q Consensus 359 a~~ 361 (520)
|+.
T Consensus 392 a~a 394 (852)
T TIGR03346 392 AAA 394 (852)
T ss_pred HHH
Confidence 874
No 19
>KOG0735|consensus
Probab=99.90 E-value=3.1e-23 Score=211.30 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=176.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP- 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~- 241 (520)
..+++||+||+|+|||.|++++++++.... ..++.+++|..+.... ...+...+...|..+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~----------------~e~iQk~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSS----------------LEKIQKFLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchh----------------HHHHHHHHHHHHHHHH
Confidence 457899999999999999999999986432 5778889998875321 333566677777777
Q ss_pred -CCceEEEEcCCccccccC-----h---------HHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceE
Q psy17062 242 -HGPCVLLIDELDYLCNKR-----Q---------DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRL 306 (520)
Q Consensus 242 -~~~~vLiiDEid~l~~~~-----~---------~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i 306 (520)
..|+||+||++|.|.... | ..|++++..+...+..+.+|++.+....+...|-.+ .+|+ .++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~--~~Fq-~~~ 568 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSP--LLFQ-IVI 568 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCc--cceE-EEE
Confidence 899999999999998731 1 135566665555567789999888766544333222 1454 459
Q ss_pred EeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCceecccccchhhhhccccc
Q psy17062 307 MFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVI 385 (520)
Q Consensus 307 ~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~ 385 (520)
++++|...+|.+||...+++. .....+.++.++..+.||.. +...-+.++|.-.+. .. ....+...++.+.+.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~--~DL~ifVeRai~~a~--le--ris~~~klltke~f~ 642 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLA--TDLVIFVERAIHEAF--LE--RISNGPKLLTKELFE 642 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccc--hhHHHHHHHHHHHHH--HH--HhccCcccchHHHHH
Confidence 999999999999999999864 33456788889999877643 222223333332100 00 000010112222221
Q ss_pred cccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCChHHHhHhhcCCCCCCCCC
Q psy17062 386 GKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESL 465 (520)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 465 (520)
.+++ ...|...+.. ........-|.++++++.+++.|...+.
T Consensus 643 ksL~-------------------~F~P~aLR~i---------------k~~k~tgi~w~digg~~~~k~~l~~~i~---- 684 (952)
T KOG0735|consen 643 KSLK-------------------DFVPLALRGI---------------KLVKSTGIRWEDIGGLFEAKKVLEEVIE---- 684 (952)
T ss_pred HHHH-------------------hcChHHhhhc---------------cccccCCCCceecccHHHHHHHHHHHHh----
Confidence 1111 0001111110 0111112456778888888887665321
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 466 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+..-+..++.....+.+.|||||||||||||+||-|+|...+
T Consensus 685 ------~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 685 ------WPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred ------ccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC
Confidence 222223455666678899999999999999999999998653
No 20
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.90 E-value=7.5e-23 Score=226.44 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=144.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~~ 214 (520)
+.++||+.+++++...|.+. ..++++|+||||||||++|+.+++.+.....+ +.+++.++...+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~----~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag----- 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG----- 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC----CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc-----
Confidence 45899999999999988663 34679999999999999999999998543211 567777766554211
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccC--------hHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKR--------QDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
.++.|+ ..+.+...|... ..++||||||+|.+.... ++.|...+. .+.+.+||+|
T Consensus 249 ---~~~~g~------~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-----~g~l~~IgaT 314 (857)
T PRK10865 249 ---AKYRGE------FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVGAT 314 (857)
T ss_pred ---cchhhh------hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-----cCCCeEEEcC
Confidence 112222 445555555432 568999999999998642 445555554 7789999999
Q ss_pred cCCCCchh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHH
Q psy17062 284 NTMDLPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCAN 354 (520)
Q Consensus 284 n~~~~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~ 354 (520)
+..+.... ..++++.+||+. |.++.|+.+++..||+.....+ ..++++++..++...++|..+ +..|++
T Consensus 315 t~~e~r~~~~~d~al~rRf~~--i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~ 392 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQK--VFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID 392 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCE--EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHH
Confidence 98765321 257889999964 8999999999999998776543 467888888877777776543 678888
Q ss_pred HHHhhhcc
Q psy17062 355 HYTNEKKS 362 (520)
Q Consensus 355 ~l~~a~~~ 362 (520)
++..++..
T Consensus 393 LiD~aaa~ 400 (857)
T PRK10865 393 LIDEAASS 400 (857)
T ss_pred HHHHHhcc
Confidence 88887653
No 21
>KOG0730|consensus
Probab=99.89 E-value=1.5e-22 Score=206.30 Aligned_cols=217 Identities=16% Similarity=0.240 Sum_probs=168.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
+.+-|.++.-.+|.+.+.-.+. -.++.+||+|||||||||++|+++|.+. +..|+.+.+.++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkgpEL--- 504 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKGPEL--- 504 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccCHHH---
Confidence 3455676666666655444222 2577899999999999999999999999 899999999886
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------hHHHHHHHHhcC--CCCCcE
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------QDVIYNILEYLN--KPKSRL 277 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~--~~~~~v 277 (520)
+++|.|+ .+..++..|..+ ..|+||||||||.+...+ ..+|.++|.++. ....+|
T Consensus 505 -------~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 505 -------FSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred -------HHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 6888888 888999999988 788999999999998875 336777776552 234689
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
.||++||+++.++.++.++ .||+ ..|++++|+.+.+.+||+.++++...-.+..++.||..+.+++|.... .+|+
T Consensus 572 ~ViAATNRpd~ID~ALlRP--GRlD-~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~--~lCq 646 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRP--GRLD-RIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV--AVCQ 646 (693)
T ss_pred EEEeccCChhhcCHHHcCC--cccc-eeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH--HHHH
Confidence 9999999999877655443 4886 459999999999999999999998777777999999999999997665 5899
Q ss_pred hhhccCCCCceecccccchhhhhcccccccc
Q psy17062 358 NEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 358 ~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
+|+..+ +....+...+..+|...+.
T Consensus 647 ~A~~~a------~~e~i~a~~i~~~hf~~al 671 (693)
T KOG0730|consen 647 EAALLA------LRESIEATEITWQHFEEAL 671 (693)
T ss_pred HHHHHH------HHHhcccccccHHHHHHHH
Confidence 888632 2223334445555555443
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.3e-22 Score=192.54 Aligned_cols=182 Identities=17% Similarity=0.269 Sum_probs=145.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..+.. -..|.+.+..+...+++|||||||||||+|+.+++.. +..|..+++....
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~~g----------- 85 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVTSG----------- 85 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccccc-----------
Confidence 446777666544 3455555677778899999999999999999999988 8899999886543
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC------CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP------HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERT 292 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~------~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~ 292 (520)
.+.++.++..+ ++..||||||||.+....|+.|+..++ ++.+++||+|. +.+.+.
T Consensus 86 ------------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE-----~G~iilIGATT--ENPsF~ 146 (436)
T COG2256 86 ------------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE-----NGTIILIGATT--ENPSFE 146 (436)
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc-----CCeEEEEeccC--CCCCee
Confidence 11122222221 568999999999999999999999999 77888998765 455666
Q ss_pred hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 293 LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 293 l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
+.+++.||+.+ +.|.+++.+++..+|.+.+... ..+++++++.++.. +.||.|.+++.++.++..
T Consensus 147 ln~ALlSR~~v--f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~---s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 147 LNPALLSRARV--FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL---SNGDARRALNLLELAALS 219 (436)
T ss_pred ecHHHhhhhhe--eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh---cCchHHHHHHHHHHHHHh
Confidence 89999999976 9999999999999999855433 34789999999998 899999999999998874
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1.5e-21 Score=177.36 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=136.0
Q ss_pred hhccCCCCCCCCCchHHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 130 ESLHLSRVPESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 130 ~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
+.+.+. ..+.++|++..+..+.-++..... +....+++||||||+||||||+.+|+++ +..+..+++..+..
T Consensus 16 ~~lRP~-~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPK-SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-S-SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEECCC--S
T ss_pred HhcCCC-CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEeccchhhhh
Confidence 344443 346799999999998888877643 3456789999999999999999999999 88888888765432
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC---------------C
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK---------------P 273 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~---------------~ 273 (520)
..+ +...+.......||||||||.+....|+.|+..++.... .
T Consensus 89 ~~d----------------------l~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 89 AGD----------------------LAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CHH----------------------HHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred HHH----------------------HHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 221 122233335678999999999999999999999984320 1
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
-.++.+||+|+...+ +..++.+||++. .++..|+.+++.+|++.....+ ..+++++...||+. +.|.+|-|
T Consensus 147 l~~FTligATTr~g~----ls~pLrdRFgi~-~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r---srGtPRiA 218 (233)
T PF05496_consen 147 LPPFTLIGATTRAGL----LSSPLRDRFGIV-LRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARR---SRGTPRIA 218 (233)
T ss_dssp ----EEEEEESSGCC----TSHCCCTTSSEE-EE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC---TTTSHHHH
T ss_pred CCCceEeeeeccccc----cchhHHhhccee-cchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh---cCCChHHH
Confidence 136889999998764 456788999863 5899999999999999877765 67899999999998 99999999
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
.++++++-.
T Consensus 219 nrll~rvrD 227 (233)
T PF05496_consen 219 NRLLRRVRD 227 (233)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998765
No 24
>KOG0733|consensus
Probab=99.87 E-value=4.2e-21 Score=192.98 Aligned_cols=172 Identities=17% Similarity=0.302 Sum_probs=144.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
..+.++||+||||||||.||+++|++. +..|+.|.+.++ +++|+|+ .+..++.+|..+
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL----------lNkYVGE------SErAVR~vFqRA 600 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL----------LNKYVGE------SERAVRQVFQRA 600 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH----------HHHHhhh------HHHHHHHHHHHh
Confidence 457789999999999999999999998 999999999886 7899898 889999999998
Q ss_pred --CCceEEEEcCCccccccCh--------HHHHHHHHhcC--CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeC
Q psy17062 242 --HGPCVLLIDELDYLCNKRQ--------DVIYNILEYLN--KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFK 309 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~--------~~L~~ll~~~~--~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~ 309 (520)
..||||||||+|.|.+.+. .++.++|.++. ....+|.||++||+++..+.++.++ .||+ ..++++
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRP--GRlD-k~LyV~ 677 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRP--GRLD-KLLYVG 677 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCC--CccC-ceeeec
Confidence 8899999999999998642 36777776553 2456899999999999888766544 6886 459999
Q ss_pred CCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHcC--CCCCCHHHHHHHHHhhh
Q psy17062 310 PYDHHQLQEIVQNRLK--NNNCFHPDAVQLVARLEP--PTSRSEIFCANHYTNEK 360 (520)
Q Consensus 310 ~~~~~~~~~Il~~~l~--~~~~~~~~~l~~la~~~~--~~~G~~r~al~~l~~a~ 360 (520)
.|+.+++.+||+...+ +-+..++..++.||+... +|+|....+ ++++|+
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa--LvreAs 730 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA--LVREAS 730 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH--HHHHHH
Confidence 9999999999999998 447778889999999876 899976664 455554
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=4.2e-21 Score=174.49 Aligned_cols=219 Identities=19% Similarity=0.274 Sum_probs=157.7
Q ss_pred CCCCCCCCchHHHHHH---HHHHHHHH--hhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 135 SRVPESLPCREAEFQS---IHRFLLSK--ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~---l~~~L~~~--~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
+...+.++|+++.-.. |.++|.+- .....+.++|+|||||||||++|++++.+. +.+++.+++..+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~l--- 187 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATEL--- 187 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHHH---
Confidence 4556678899866444 45555542 223568899999999999999999999998 899999998664
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC---------hHHHHHHHHhcC--CCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR---------QDVIYNILEYLN--KPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~---------~~~L~~ll~~~~--~~~~~ 276 (520)
+...+|. ....+..++..+ ..|||+||||+|.+.-++ .+++..+|..+. ..+-+
T Consensus 188 -------iGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 188 -------IGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred -------HHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 4555555 566777777777 789999999999987653 223444444332 24568
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++.|++||.+++ |+++++|||. ..|.|.-|+.+++.+|++.+++..+.--+..+++++..+.+.+|....- .++
T Consensus 255 VvtIaaTN~p~~----LD~aiRsRFE-eEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdike-kvl 328 (368)
T COG1223 255 VVTIAATNRPEL----LDPAIRSRFE-EEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE-KVL 328 (368)
T ss_pred eEEEeecCChhh----cCHHHHhhhh-heeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHH-HHH
Confidence 999999999885 5667889997 4599999999999999999999986555666999999999988864322 233
Q ss_pred HhhhccCCCCceecccccchhhhhccccccccc
Q psy17062 357 TNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLD 389 (520)
Q Consensus 357 ~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~ 389 (520)
..|... +...+.+.++..++..+..
T Consensus 329 K~aLh~--------Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 329 KTALHR--------AIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHH--------HHHhchhhhhHHHHHHHHH
Confidence 333221 2224455566666655543
No 26
>KOG0741|consensus
Probab=99.86 E-value=3.8e-21 Score=190.21 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=145.5
Q ss_pred ccCCCCCCC--CCchHHHHHHHHHHHHHHhh----------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 132 LHLSRVPES--LPCREAEFQSIHRFLLSKIS----------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 132 l~~~~~p~~--l~gr~~ei~~l~~~L~~~~~----------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
+++++-.++ +-|-++|+..+.+--..... -..-.++|||||||||||.+||.+.+-|.... ..
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre---PK-- 286 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE---PK-- 286 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC---Cc--
Confidence 334444333 56789999888654332211 12235799999999999999999999986542 22
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC----------CCceEEEEcCCccccccC----------
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP----------HGPCVLLIDELDYLCNKR---------- 259 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~----------~~~~vLiiDEid~l~~~~---------- 259 (520)
.||+.+ |+++++|+ .++.++++|..+ ..-.|||+||||.++..+
T Consensus 287 IVNGPe----------IL~KYVGe------SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh 350 (744)
T KOG0741|consen 287 IVNGPE----------ILNKYVGE------SEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH 350 (744)
T ss_pred ccCcHH----------HHHHhhcc------cHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc
Confidence 357765 48899998 677777777765 567899999999998764
Q ss_pred hHHHHHHHHhcC--CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----CCCCHH
Q psy17062 260 QDVIYNILEYLN--KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----NCFHPD 333 (520)
Q Consensus 260 ~~~L~~ll~~~~--~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----~~~~~~ 333 (520)
..++.++|.-+. ..-.++.|||.||+.++++.+|.++ .||.++ +.+.-|++..+.+|++-+.+++ ..-++.
T Consensus 351 D~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRP--GRlEVq-mEIsLPDE~gRlQIl~IHT~rMre~~~l~~dV 427 (744)
T KOG0741|consen 351 DTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRP--GRLEVQ-MEISLPDEKGRLQILKIHTKRMRENNKLSADV 427 (744)
T ss_pred HHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCC--CceEEE-EEEeCCCccCceEEEEhhhhhhhhcCCCCCCc
Confidence 346777765432 1235899999999999998777655 788766 8889999999999999877765 445677
Q ss_pred HHHHHHHHcCCCCCCHHHH
Q psy17062 334 AVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 334 ~l~~la~~~~~~~G~~r~a 352 (520)
.++.||.++..++|.-...
T Consensus 428 dl~elA~lTKNfSGAEleg 446 (744)
T KOG0741|consen 428 DLKELAALTKNFSGAELEG 446 (744)
T ss_pred CHHHHHHHhcCCchhHHHH
Confidence 8999999999999975543
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.83 E-value=3.6e-20 Score=188.65 Aligned_cols=200 Identities=17% Similarity=0.286 Sum_probs=147.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQ---------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~---------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
++.++.+.|++.+++++.+.+...+.. .++.++||+||||||||++|+++++++ +..++.+++..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~ 200 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 200 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHH
Confidence 445567899999999999987653222 457789999999999999999999998 78899998876
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC-
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN- 271 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~- 271 (520)
+ ...+.|. ....+...|..+ ..|+||||||+|.+...+ +..|.+++..+.
T Consensus 201 l----------~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 201 L----------VQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred H----------hHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 5 2334443 333445555544 578999999999996432 335667765442
Q ss_pred -CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 272 -KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 272 -~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
....++.||++||..+.++..+.++ +||+. .|.|++|+.+++.+|++.++.......+..+..++..+.+++|...
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRp--gRfd~-~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl 341 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRP--GRFDR-IIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADL 341 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCC--ccCce-EEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHH
Confidence 2345899999999987555333211 47864 4999999999999999999987644445678999999999887665
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
.+ +|++|+.
T Consensus 342 ~~--l~~eA~~ 350 (389)
T PRK03992 342 KA--ICTEAGM 350 (389)
T ss_pred HH--HHHHHHH
Confidence 54 5777765
No 28
>KOG0989|consensus
Probab=99.83 E-value=9.8e-20 Score=170.06 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=146.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.+.|++..+..|...+.. +...++|||||||||||++++++++++.........+...++++..
T Consensus 36 de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----------- 100 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----------- 100 (346)
T ss_pred HhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc-----------
Confidence 4578888887777776654 4557899999999999999999999997633224455566665543
Q ss_pred HHhcCCCChHHH--HHHHHHHHcCC-----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchh
Q psy17062 219 LLLNVDAPPEQA--KAMLERHFTRP-----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPER 291 (520)
Q Consensus 219 ~l~g~~~~~~~~--~~~l~~~~~~~-----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~ 291 (520)
|........ +..+....... ....|+||||+|.|..+.|..|...++.. ...+.+|.+||..+
T Consensus 101 ---Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~---s~~trFiLIcnyls---- 170 (346)
T KOG0989|consen 101 ---GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF---SRTTRFILICNYLS---- 170 (346)
T ss_pred ---cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc---ccceEEEEEcCChh----
Confidence 222111111 11222221111 33489999999999999999999999953 34667777888765
Q ss_pred hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 292 TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 292 ~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+.+.|||+. ++|+++..+.+...|+..+... ..+++++++.|+.. ..||+|+|+.+|+.++.
T Consensus 171 rii~pi~SRC~K--frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~---S~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 171 RIIRPLVSRCQK--FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI---SDGDLRRAITTLQSLSL 236 (346)
T ss_pred hCChHHHhhHHH--hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHhhc
Confidence 356789999975 9999999999999999999876 78999999999998 89999999999999876
No 29
>KOG0731|consensus
Probab=99.82 E-value=1.1e-19 Score=191.01 Aligned_cols=251 Identities=17% Similarity=0.240 Sum_probs=186.5
Q ss_pred CCCCCCchHHHHH---HHHHHHHHH-----hhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQ---SIHRFLLSK-----ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~---~l~~~L~~~-----~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
....+.|.++.-+ ++.++|.+- +....|.++||+||||||||.||+++|.+. +++|+.++++++
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEF-- 380 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEF-- 380 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHH--
Confidence 3456778775544 455555442 123678899999999999999999999998 999999999886
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh------------HHHHHHHHhcC--C
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ------------DVIYNILEYLN--K 272 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~------------~~L~~ll~~~~--~ 272 (520)
+..+.|. -..+++.+|..+ ..|+||||||||.+...+. ..|.++|-.+. .
T Consensus 381 --------vE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 381 --------VEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --------HHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 4555554 245667788777 7899999999999877652 35778775442 2
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHcCCCCCCHHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNC-FHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~-~~~~~l~~la~~~~~~~G~~r~ 351 (520)
....++++++||+.+.++..+.+. .||+ +.|++..|+...+.+|++.+++.... .++..+..+|.++++++|+...
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrp--GRfd-r~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRP--GRFD-RQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCC--Cccc-cceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 347799999999999888766443 6886 45999999999999999999998644 4667777799999999988665
Q ss_pred HHHHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCC
Q psy17062 352 CANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSS 414 (520)
Q Consensus 352 al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
++|.+|+-.+.+.........+...+.++++.+................++|+++++..+.
T Consensus 524 --n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~ 584 (774)
T KOG0731|consen 524 --NLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW 584 (774)
T ss_pred --hhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc
Confidence 5777777654444444455556666666666665555555666666778999999987764
No 30
>KOG0728|consensus
Probab=99.82 E-value=2.2e-19 Score=162.40 Aligned_cols=200 Identities=19% Similarity=0.346 Sum_probs=156.2
Q ss_pred CCCCCC----CCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 135 SRVPES----LPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 135 ~~~p~~----l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.-+|++ +-|-++++.++.+.+.--. .-..+.++|||||||+|||.+++++++.- .+.||.+
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firv 212 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRV 212 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEe
Confidence 445554 4567899999888876432 22456789999999999999999999987 8999999
Q ss_pred ccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHH
Q psy17062 202 NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILE 268 (520)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~ 268 (520)
+++++ +.++.|+ .....+.+|..+ +.|+|||+||||.+...+ |..++.+|+
T Consensus 213 sgsel----------vqk~ige------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 213 SGSEL----------VQKYIGE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred chHHH----------HHHHhhh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 99875 6788887 455666677666 789999999999997653 345666665
Q ss_pred hcC--CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCC
Q psy17062 269 YLN--KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTS 346 (520)
Q Consensus 269 ~~~--~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~ 346 (520)
.+. ....++.+|.+||+.+.++..+.++ .|++- .|.||+|+.+.+.+||+-+.+..+......++.||....|.+
T Consensus 277 qldgfeatknikvimatnridild~allrp--gridr-kiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDILDPALLRP--GRIDR-KIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGAS 353 (404)
T ss_pred hccccccccceEEEEeccccccccHhhcCC--Ccccc-cccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCc
Confidence 542 3467899999999999887665433 56653 499999999999999999988877777778999999999999
Q ss_pred CCHHHHHHHHHhhhc
Q psy17062 347 RSEIFCANHYTNEKK 361 (520)
Q Consensus 347 G~~r~al~~l~~a~~ 361 (520)
|.--.+ .|..|+.
T Consensus 354 gaevk~--vcteagm 366 (404)
T KOG0728|consen 354 GAEVKG--VCTEAGM 366 (404)
T ss_pred cchhhh--hhhhhhH
Confidence 876553 6777765
No 31
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.8e-19 Score=163.78 Aligned_cols=214 Identities=17% Similarity=0.241 Sum_probs=164.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
..++|+++..+++.-++..+... ....++||+||||.||||||+.+|+++ +..+-...+..+.-+.+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~leK~gD------ 93 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALEKPGD------ 93 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEecccccccChhh------
Confidence 45899999999999999886544 445799999999999999999999999 76666666655433222
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC---------------CCCCcEEEEEE
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN---------------KPKSRLIILCI 282 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~---------------~~~~~v~vI~~ 282 (520)
+-.++.......||||||||.+.....++||..|+.+. ..-.++.+||+
T Consensus 94 ----------------laaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 94 ----------------LAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred ----------------HHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 23344444688999999999999999999999998532 12347889999
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
|.+..++ ..++..||++. .++..|+.+++.+|+......+ ..+++++...||++ +.|-+|-|..++++.-.
T Consensus 158 TTr~G~l----t~PLrdRFGi~-~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r---SRGTPRIAnRLLrRVRD 229 (332)
T COG2255 158 TTRAGML----TNPLRDRFGII-QRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR---SRGTPRIANRLLRRVRD 229 (332)
T ss_pred ccccccc----cchhHHhcCCe-eeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh---ccCCcHHHHHHHHHHHH
Confidence 9988754 45788999865 8999999999999999888765 67899999999998 88999999999988765
Q ss_pred cCCCCceecccccchhhhhccccccccccCCCccc
Q psy17062 362 SKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENL 396 (520)
Q Consensus 362 ~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~ 396 (520)
.+...+...++......+.....++..
T Consensus 230 --------fa~V~~~~~I~~~ia~~aL~~L~Vd~~ 256 (332)
T COG2255 230 --------FAQVKGDGDIDRDIADKALKMLDVDEL 256 (332)
T ss_pred --------HHHHhcCCcccHHHHHHHHHHhCcccc
Confidence 344444455555555555554444433
No 32
>KOG0738|consensus
Probab=99.81 E-value=2.7e-19 Score=171.51 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=149.4
Q ss_pred CCCCchHHHHHHHHHHHHHH------hhc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSK------ISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~------~~~--~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
+.+.|-.+..+-|.+.+--- +.+ .+=.+||++||||||||.||+++|.++ +..|+-|..+.+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstl---- 281 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTL---- 281 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhh----
Confidence 45677666665555543211 111 233679999999999999999999999 888888888776
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh------------HHHHHHHHhcCCCCCc
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ------------DVIYNILEYLNKPKSR 276 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~------------~~L~~ll~~~~~~~~~ 276 (520)
.+++.|+ .++.++-+|..+ ..|++|||||||.|...+. ..|+..++........
T Consensus 282 ------tSKwRGe------SEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~ 349 (491)
T KOG0738|consen 282 ------TSKWRGE------SEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN 349 (491)
T ss_pred ------hhhhccc------hHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc
Confidence 4778787 677777777766 7899999999999988642 3577777776433333
Q ss_pred ---EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 277 ---LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 277 ---v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
|.|+++||-+..++ .+|++||. .+|.+|-|+.+.+..+|+..+......++..++.|++.+.+|+|+...
T Consensus 350 ~k~VmVLAATN~PWdiD----EAlrRRlE-KRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~-- 422 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDID----EALRRRLE-KRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT-- 422 (491)
T ss_pred ceeEEEEeccCCCcchH----HHHHHHHh-hheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH--
Confidence 67778888877554 46667775 349999999999999999999988888889999999999999998766
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
++|+.|+.
T Consensus 423 nvCreAsm 430 (491)
T KOG0738|consen 423 NVCREASM 430 (491)
T ss_pred HHHHHHHH
Confidence 47777764
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.81 E-value=1.7e-19 Score=192.26 Aligned_cols=252 Identities=17% Similarity=0.269 Sum_probs=164.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
...+.+.|.++..+++.+.+..... ...+.++||+||||||||++|+++|.++ +.++++++|.++.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f~ 253 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEFV 253 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHHH
Confidence 3445688888777666665543211 2346789999999999999999999988 8899999987753
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCcccccc-----------ChHHHHHHHHhcC--C
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNK-----------RQDVIYNILEYLN--K 272 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~-----------~~~~L~~ll~~~~--~ 272 (520)
..+.|. ....++..|..+ ..|+||||||+|.+... .+..|.+++..+. .
T Consensus 254 ----------~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 254 ----------EMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred ----------HHhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 222232 223445555554 67999999999999643 2346777776542 2
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
...+++||++||..+.++..+.++ .||+. .|.|+.|+.+++.+||+.+++......+..+..++..+.|++|. .+
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRp--GRFd~-~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sga--DL 392 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRP--GRFDR-QITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGA--DL 392 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhcc--ccCce-EEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHH--HH
Confidence 356799999999987655433221 47764 59999999999999999999876666778899999997776553 22
Q ss_pred HHHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCC
Q psy17062 353 ANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSH 415 (520)
Q Consensus 353 l~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (520)
.+++..|+..+.+.........+.....++++.+.... .......+...++|+.+|+.....
T Consensus 393 ~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~-~~~~~~~~~~vA~hEaGhA~v~~~ 454 (638)
T CHL00176 393 ANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGT-PLEDSKNKRLIAYHEVGHAIVGTL 454 (638)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccC-ccccHHHHHHHHHHhhhhHHHHhh
Confidence 24555544321111111122223333333333333222 233344466789999998876554
No 34
>KOG0727|consensus
Probab=99.80 E-value=2.7e-19 Score=162.06 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=159.2
Q ss_pred CCCchHHHHHHHHHHHHH---------HhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 140 SLPCREAEFQSIHRFLLS---------KISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~---------~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
.+-|.+-+-+++.+.+.- .+.-.++.++|+|||||||||.|++++|+.- ...||.+.++++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsef---- 225 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEF---- 225 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeeccHHH----
Confidence 455666555555555432 2234678899999999999999999999987 778999999876
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CCCC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KPKS 275 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~~~ 275 (520)
+.++.|+. -..++..|.-+ +.|.||||||+|.+..++ |.+|..+|+.+. ....
T Consensus 226 ------vqkylgeg------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 226 ------VQKYLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred ------HHHHhccC------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 67888873 34455666555 789999999999998764 456888887652 3467
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++.+|.+||+.+.++..+.++ .|+.- .|.||.++..+.+-++.....++...++..++.+..+-...+|....+ +
T Consensus 294 nvkvimatnradtldpallrp--grldr-kiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~a--i 368 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRP--GRLDR-KIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINA--I 368 (408)
T ss_pred ceEEEEecCcccccCHhhcCC--ccccc-cccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHH--H
Confidence 899999999999777655433 56653 399999999999999999999887778888888877766677766554 7
Q ss_pred HHhhhccCCCCceecccccchhhhh
Q psy17062 356 YTNEKKSKSKYWDWVSSSSDEEEKE 380 (520)
Q Consensus 356 l~~a~~~~~~~~~~~a~~~~~~~~~ 380 (520)
|+.|+..+.+..+.+....+.+..-
T Consensus 369 cqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 369 CQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred HHHHhHHHHHhcceeeeHHHHHHHH
Confidence 8888876666555555555554433
No 35
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.80 E-value=5e-19 Score=179.34 Aligned_cols=199 Identities=18% Similarity=0.241 Sum_probs=145.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+.+.++|.+.+...+. -.++.++||+||||||||++++++++++ +..++.+.+..+
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l 215 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEF 215 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 3344688999999999888764322 1367889999999999999999999988 788888876543
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcCC-
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNK- 272 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~- 272 (520)
...+.|. ....+...|..+ ..|+||||||+|.+...+ +..+.+++.++..
T Consensus 216 ----------~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 216 ----------VQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----------HHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 3444444 233455555444 689999999999986432 2356667665531
Q ss_pred -CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 273 -PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 273 -~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
...++.||++||.++.++..+.+ ..||.. .|.|+.|+.+++..|++.++.......+..++.++..+.+++|....
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR--~GRfd~-~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~ 356 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLR--PGRLDR-KIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA 356 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcC--CCcccE-EEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 34578999999998765543321 147874 49999999999999999999876555667889999999988876544
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
.+|..|+.
T Consensus 357 --~l~~eA~~ 364 (398)
T PTZ00454 357 --AICQEAGM 364 (398)
T ss_pred --HHHHHHHH
Confidence 46777765
No 36
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=182.80 Aligned_cols=213 Identities=15% Similarity=0.210 Sum_probs=152.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
..+.|.+.+++++.+++...+. -.++.++||+||||||||++|+++++++ ...++.+.+.++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~-- 254 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELI-- 254 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhh--
Confidence 4578999999999998864322 2466789999999999999999999988 7778888776642
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~~ 274 (520)
..+.|. ....+...|..+ ..|+||||||+|.+...+ +..+.++|..+. ...
T Consensus 255 --------~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 255 --------QKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --------hhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 334343 233345555444 679999999999987542 234566665442 134
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhh--ccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVS--SRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~--sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.++.||++||..+.++. .+. +||.. .|.|++|+.+++.+|++.++.......+..++.++..+.+++|....+
T Consensus 321 ~~V~VI~ATNr~d~LDp----aLlRpGRfd~-~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 321 GDVKVIMATNRIESLDP----ALIRPGRIDR-KIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred CCeEEEEecCChHHhhH----HhccCCeeEE-EEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence 57899999998875543 443 57764 599999999999999999998765555667889999988888876553
Q ss_pred HHHHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 353 ANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 353 l~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
+|..|+.. |...+...++.+++..|.
T Consensus 396 --i~~eA~~~--------Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 396 --ICTEAGLL--------ALRERRMKVTQADFRKAK 421 (438)
T ss_pred --HHHHHHHH--------HHHhcCCccCHHHHHHHH
Confidence 67777763 333444456666665554
No 37
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=186.28 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=199.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
..+....|.++..+++.+.+.-.. ...-+.+++++||||||||.||++++.+. +++++.++++++
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~F- 219 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF- 219 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhh-
Confidence 445667888766666555554432 12567889999999999999999999998 999999999987
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcCC--
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNK-- 272 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~-- 272 (520)
+..++|. -..+.+.+|.++ ..||||||||+|.+...+ ...|.+++-.+..
T Consensus 220 ---------VemfVGv------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 220 ---------VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ---------hhhhcCC------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 5677776 344566777777 569999999999998765 2467777755532
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.+..|++|++||+++.++.++.+. .||+ ++|.++.|+...+.+|++.+++......+..+..+|+.+.++.|....
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRp--gRFD-RqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~- 360 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRP--GRFD-RQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA- 360 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCC--CCcc-eeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh-
Confidence 346899999999999887766544 6776 459999999999999999999887555677788899999998887654
Q ss_pred HHHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCC
Q psy17062 353 ANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHK 416 (520)
Q Consensus 353 l~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (520)
+++.+|+-.+.+...+.....+.++..++++.+..+...+.....+...+||+.+|+.....-
T Consensus 361 -nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l 423 (596)
T COG0465 361 -NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLL 423 (596)
T ss_pred -hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhC
Confidence 566666665555566667788888999999999988888888888999999999887765554
No 38
>KOG0652|consensus
Probab=99.79 E-value=4.6e-19 Score=161.25 Aligned_cols=195 Identities=16% Similarity=0.281 Sum_probs=150.7
Q ss_pred CCCchHHHHHHHHHHHHHH---------hhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 140 SLPCREAEFQSIHRFLLSK---------ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~---------~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
.+-|-+++++++.+.+--. +.-.++.++|+|||||||||.+|++.|.+- +..|+.+.+..+
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT------~aTFLKLAgPQL---- 241 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT------NATFLKLAGPQL---- 241 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc------cchHHHhcchHH----
Confidence 4788999999998875321 123678899999999999999999999876 666666666554
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--CCCCC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL--NKPKS 275 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~--~~~~~ 275 (520)
+..+.|. ..+.++..|.-+ +.|+||||||+|.+..++ |..++.+|+.+ .....
T Consensus 242 ------VQMfIGd------GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 242 ------VQMFIGD------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred ------Hhhhhcc------hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc
Confidence 5666676 455666666666 789999999999998764 34566666654 23567
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
.+.+|++||+.+.++..+.+. .|+.- .|.||-|+.+.+..|++-+.+++..-++.-++.+|+.+..+.|.-.+| .
T Consensus 310 ~vKviAATNRvDiLDPALlRS--GRLDR-KIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKA--V 384 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRS--GRLDR-KIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKA--V 384 (424)
T ss_pred ceEEEeecccccccCHHHhhc--ccccc-cccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhee--e
Confidence 899999999999877665432 56763 499999999999999999999988888889999999999999987665 4
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
|-.|+.
T Consensus 385 cVEAGM 390 (424)
T KOG0652|consen 385 CVEAGM 390 (424)
T ss_pred ehhhhH
Confidence 555544
No 39
>KOG2028|consensus
Probab=99.79 E-value=4.4e-19 Score=168.53 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=143.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
..+|++..+.+ ...|...+.....++++|+||||||||+||+.++...... .+.||++.+..... .-.+.
T Consensus 139 dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt~a~t--~dvR~---- 208 (554)
T KOG2028|consen 139 DYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSATNAKT--NDVRD---- 208 (554)
T ss_pred HhcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEeccccch--HHHHH----
Confidence 35677666665 5566666677788899999999999999999999876443 46688887765432 11111
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhc
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSS 299 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~s 299 (520)
+++.-.+.....++..||||||||.+....|+.|+..++ .+.|++||+|. +.+.+.++.++.+
T Consensus 209 ----------ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE-----~G~I~lIGATT--ENPSFqln~aLlS 271 (554)
T KOG2028|consen 209 ----------IFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE-----NGDITLIGATT--ENPSFQLNAALLS 271 (554)
T ss_pred ----------HHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceec-----cCceEEEeccc--CCCccchhHHHHh
Confidence 222222222222688999999999999999999999988 77899998765 3455668889999
Q ss_pred cCCcceEEeCCCCHHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 300 RMGLTRLMFKPYDHHQLQEIVQNRLKNN--------------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 300 R~~~~~i~~~~~~~~~~~~Il~~~l~~~--------------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
||.+ +.+.+++.+.+..||.+...-+ ..+++..+++++.. +.||.|.|++.|+.++
T Consensus 272 RC~V--fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l---sdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 272 RCRV--FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL---SDGDARAALNALEMSL 341 (554)
T ss_pred ccce--eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh---cCchHHHHHHHHHHHH
Confidence 9966 9999999999999999855521 23778899999998 8999999999998873
No 40
>KOG0729|consensus
Probab=99.79 E-value=7e-19 Score=160.58 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=171.3
Q ss_pred CCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
..+-|..++++.+.+.+.--+. -.++.++|+|||||||||.+|+++|+.- +..||.+-++++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigsel--- 247 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSEL--- 247 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHH---
Confidence 4577889999999998765332 2577889999999999999999999987 888998888765
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--CCCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL--NKPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~--~~~~ 274 (520)
+.+++|+ ....++.+|..+ ++-||||+||||.+...+ |..++.++..+ ....
T Consensus 248 -------vqkyvge------garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr 314 (435)
T KOG0729|consen 248 -------VQKYVGE------GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred -------HHHHhhh------hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC
Confidence 6888887 566777788777 788999999999997653 34566666554 2467
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
+++.++.+||+++.++..+.++ .|+.- .+.|.-|+.+.+..|++-+.+.+..-.+.-++.||+++....|.-.+ .
T Consensus 315 gnikvlmatnrpdtldpallrp--grldr-kvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeir--s 389 (435)
T KOG0729|consen 315 GNIKVLMATNRPDTLDPALLRP--GRLDR-KVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR--S 389 (435)
T ss_pred CCeEEEeecCCCCCcCHhhcCC--ccccc-ceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHH--H
Confidence 8999999999999877665433 56653 39999999999999999888876555677889999999988887555 3
Q ss_pred HHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 355 HYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 355 ~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
.|.+|+..+.+..+.++...+.-.....++.+..
T Consensus 390 vcteagmfairarrk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 390 VCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7888877655555556666666555555555443
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=5.8e-19 Score=186.10 Aligned_cols=195 Identities=18% Similarity=0.310 Sum_probs=135.2
Q ss_pred CCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
+.++|.+....++.+++.... ....+.++||+||||||||+++++++.++ +.+++++++.++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~---- 124 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF---- 124 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHHH----
Confidence 346677766665555444211 13456789999999999999999999988 889999887654
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcC--CCCC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLN--KPKS 275 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~--~~~~ 275 (520)
...+.|. ....+...|..+ ..|+||||||+|.+...++ ..+.+++..+. ....
T Consensus 125 ------~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 125 ------VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred ------HHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 2333343 234455556554 5789999999999875432 34555554432 2345
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
+++||++||.++.++..+.+ ..||+. .|.|+.|+.+++.+|++.++.......+..+..++..+.+++|.... .+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r--~gRfd~-~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~--~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLR--PGRFDR-QVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA--NL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhc--CCcceE-EEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH--HH
Confidence 78999999998865543322 147864 59999999999999999999875444667788999998887764322 34
Q ss_pred HHhhh
Q psy17062 356 YTNEK 360 (520)
Q Consensus 356 l~~a~ 360 (520)
|.+|+
T Consensus 268 ~~eA~ 272 (495)
T TIGR01241 268 LNEAA 272 (495)
T ss_pred HHHHH
Confidence 44443
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=1e-17 Score=162.18 Aligned_cols=204 Identities=15% Similarity=0.176 Sum_probs=138.6
Q ss_pred CCCchHHHHHHHHH---HHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEEccccCC
Q psy17062 140 SLPCREAEFQSIHR---FLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG-DKFVYVEMNALSIP 207 (520)
Q Consensus 140 ~l~gr~~ei~~l~~---~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~-~~~~~i~v~~~~~~ 207 (520)
.++|.+...++|.+ ++..... .+...+++|+||||||||++|+.+++.+..... ....++++++.++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l- 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL- 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh-
Confidence 46787655555544 3322111 123468999999999999999999998864321 1345777777654
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccC-----hHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR-----QDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~-----~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
...+.|+ ....+...|..+ .++||||||+|.|.... .+.+..++..+......+++|++
T Consensus 86 ---------~~~~~g~------~~~~~~~~~~~a-~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 86 ---------VGEYIGH------TAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred ---------hhhhccc------hHHHHHHHHHhc-cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 2344443 233444555544 35799999999987421 23455555554444567777777
Q ss_pred EcCCCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHc-------CCCCCCHHHHH
Q psy17062 283 ANTMDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLE-------PPTSRSEIFCA 353 (520)
Q Consensus 283 tn~~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~-------~~~~G~~r~al 353 (520)
+...++.. ..+.+.+.+||.. .|+|++|+.+++.+|++.++... ..+++++++.|+..+ ....||.|.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~-~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPI-SIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred CCcchhHHHHhcChHHHhccce-EEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence 66544322 2246789999953 49999999999999999999865 568899998886653 34579999999
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
++++.+.+
T Consensus 229 n~~e~a~~ 236 (261)
T TIGR02881 229 NIIEKAIR 236 (261)
T ss_pred HHHHHHHH
Confidence 99998775
No 43
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=2.1e-18 Score=178.46 Aligned_cols=196 Identities=16% Similarity=0.254 Sum_probs=140.0
Q ss_pred CCCCchHHHHHHHHHHHHH----Hh--hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLS----KI--SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~----~~--~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~ 212 (520)
+.+.|.+...+.+...... .. .-..+.++||+||||||||++|++++.++ +.+++.+++..+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l------ 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKL------ 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHh------
Confidence 3466766555444432211 11 11456889999999999999999999998 899999998654
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC---------hHHHHHHHHhcCCCCCcEEEEE
Q psy17062 213 YSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR---------QDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~---------~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
...+.|+ ....++..|..+ ..|+||||||||.++... ..++..++.++.....+++||+
T Consensus 296 ----~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 ----FGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----cccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 2344444 445566666654 689999999999887631 2356667777665677899999
Q ss_pred EEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 282 IANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN--CFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 282 ~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~--~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
+||..+.++..+.+ ..||+ ..|+|+.|+.+++.+|++.++.+.. ...+..++.+++.+.|++|..... ++..|
T Consensus 366 TTN~~~~Ld~allR--~GRFD-~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~--lv~eA 440 (489)
T CHL00195 366 TANNIDLLPLEILR--KGRFD-EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ--SIIEA 440 (489)
T ss_pred ecCChhhCCHHHhC--CCcCC-eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH--HHHHH
Confidence 99998865543321 25887 4599999999999999999998752 235678999999999998865442 44554
Q ss_pred hc
Q psy17062 360 KK 361 (520)
Q Consensus 360 ~~ 361 (520)
+.
T Consensus 441 ~~ 442 (489)
T CHL00195 441 MY 442 (489)
T ss_pred HH
Confidence 43
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=4.1e-18 Score=170.58 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=142.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
...++|+++.+..+..++..... ...+.+++|+||||||||++|+.+++++ +..+..+++.......
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~~~~~~~~~~~~~~------ 91 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM------GVNIRITSGPALEKPG------ 91 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh------CCCeEEEecccccChH------
Confidence 35689999999999999877543 3456789999999999999999999998 6666655554332111
Q ss_pred HHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC---------------CCCcEEEEE
Q psy17062 217 LELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK---------------PKSRLIILC 281 (520)
Q Consensus 217 ~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~---------------~~~~v~vI~ 281 (520)
.+...+.....+.||||||+|.+....++.|+.+++.... .-.++.+|+
T Consensus 92 ----------------~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 92 ----------------DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred ----------------HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 1122222235678999999999988777888888774310 113477888
Q ss_pred EEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 282 IANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 282 ~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+++.... +..++.+||.. .+.|++|+.+++.+||+..+... ..+++++++.|++. +.|++|.+..++..+.
T Consensus 156 at~~~~~----l~~~L~sRf~~-~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~---~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 156 ATTRAGL----LTSPLRDRFGI-VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARR---SRGTPRIANRLLRRVR 227 (328)
T ss_pred ecCCccc----CCHHHHHhcCe-eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH---cCCCchHHHHHHHHHH
Confidence 8887653 45578889864 48999999999999999888765 67899999999998 7788899988888754
Q ss_pred c
Q psy17062 361 K 361 (520)
Q Consensus 361 ~ 361 (520)
.
T Consensus 228 ~ 228 (328)
T PRK00080 228 D 228 (328)
T ss_pred H
Confidence 3
No 45
>KOG0735|consensus
Probab=99.78 E-value=4.4e-18 Score=174.00 Aligned_cols=189 Identities=17% Similarity=0.218 Sum_probs=151.3
Q ss_pred CCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 140 SLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
.+.|..+..+.+.+.+.--.. -+...++|||||||||||.||.+++... ++.+|.+.+.++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl---- 737 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL---- 737 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH----
Confidence 455665555555555443211 1234679999999999999999999988 999999999875
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------hHHHHHHHHhcCC--CCCcEE
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------QDVIYNILEYLNK--PKSRLI 278 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~~--~~~~v~ 278 (520)
++++.|. .++.++.+|..+ .+|||||+||+|.+.+++ ..++.++|..+.. .-.++.
T Consensus 738 ------L~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 738 ------LSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred ------HHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 7888887 788899999988 899999999999999875 3467777765532 235789
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
++++|.++++++.++.++ .|++ +.+..+.|+..++.+|++.........++..++.+|..+++++|...+++
T Consensus 806 i~aaTsRpdliDpALLRp--GRlD-~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~l 877 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRP--GRLD-KLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSL 877 (952)
T ss_pred EEEecCCccccCHhhcCC--Cccc-eeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHH
Confidence 999999999988776544 6776 34999999999999999988887777788999999999999999776653
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=6e-18 Score=168.15 Aligned_cols=187 Identities=18% Similarity=0.254 Sum_probs=138.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
..++|++..++.|..++...... ..+.+++|+||||||||++++++++++ +..+..+++.......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~~~~~~~~~~~~------- 70 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLKITSGPALEKPG------- 70 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeccchhcCch-------
Confidence 35789999999999998765333 345689999999999999999999988 5555555443322111
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC---------------CCCCcEEEEEE
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN---------------KPKSRLIILCI 282 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~---------------~~~~~v~vI~~ 282 (520)
.+...+.....+.+|||||+|.+....++.|+.+++... ....++++|++
T Consensus 71 ---------------~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 71 ---------------DLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred ---------------hHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 111112222467899999999999887888888876332 11234778888
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
++.... +..++.+||.. .+.|.+|+.+++.++++..+... ..+++++++.|++. +.|++|.+..++..+..
T Consensus 136 t~~~~~----l~~~l~sR~~~-~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~---~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 136 TTRAGM----LTSPLRDRFGI-ILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARR---SRGTPRIANRLLRRVRD 207 (305)
T ss_pred cCCccc----cCHHHHhhcce-EEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH---hCCCcchHHHHHHHHHH
Confidence 877643 45578899954 48999999999999999888754 67899999999998 77888998888887643
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=9.2e-18 Score=170.72 Aligned_cols=204 Identities=15% Similarity=0.139 Sum_probs=139.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..+..|..++.. +..+..+||+||+|||||++|+.+++.+...... -...|..+.+...+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~---~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~----~~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS---GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPI----GNEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhcCccccc----CccccCCCcHHHHHHccCCc
Confidence 4589999998888777754 2334568999999999999999999998543110 01112222111111000000
Q ss_pred HHh---c-CCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhh
Q psy17062 219 LLL---N-VDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERT 292 (520)
Q Consensus 219 ~l~---g-~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~ 292 (520)
.+. . .......+.+......... +...|+||||+|.|....++.|+..++. ...++++|++|+... .
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE---Pp~~viFILaTte~~----k 163 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE---PPAHIVFILATTEFH----K 163 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc---CCCceEEEeecCChh----h
Confidence 000 0 0001111222111111111 5678999999999998888888888874 356888888887643 3
Q ss_pred hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 293 LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 293 l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.+.+.|||.. +.|.+++.+++.+.|+..+... ..++++++..|++. ..|++|.|+++++++..
T Consensus 164 I~~TI~SRCq~--~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~---S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 164 IPETILSRCQD--FIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK---GDGSVRDMLSFMEQAIV 228 (484)
T ss_pred ccHHHHhhhhe--eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCChHHHHHHHHHHHHH
Confidence 66789999965 9999999999999999998865 56899999999998 88999999999988754
No 48
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.77 E-value=2.3e-18 Score=174.88 Aligned_cols=200 Identities=17% Similarity=0.276 Sum_probs=141.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQ---------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~---------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.+.++.+.|.+++++++.+++...+.. .++.++||+||||||||++|+++++.+ +..++.+.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~ 191 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 191 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHH
Confidence 445567899999999999988654332 346789999999999999999999988 77777776543
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC-
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN- 271 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~- 271 (520)
+ ...+.|. ....+...|..+ ..|+||||||+|.+...+ +..+.+++..+.
T Consensus 192 l----------~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 192 L----------VRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred H----------HHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 2 2333332 223344444433 578999999999986432 345666665442
Q ss_pred -CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 272 -KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 272 -~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
....++.||++||..+.++..+.+ ..||.. .|.|+.|+.+++.+|++.++.......+..++.+++.+.+++|...
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r--~grfd~-~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl 332 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLR--PGRFDR-IIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADL 332 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcC--cccCce-EEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHH
Confidence 124589999999988755433322 147764 5999999999999999999877544445678999999988887554
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
.+ +|..|+.
T Consensus 333 ~~--l~~~A~~ 341 (364)
T TIGR01242 333 KA--ICTEAGM 341 (364)
T ss_pred HH--HHHHHHH
Confidence 43 5666665
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.3e-17 Score=175.43 Aligned_cols=190 Identities=23% Similarity=0.231 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.|.+++.. +..+..+||+|++|||||++++.+++.+.+.... ...+++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred HHHcCcHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4589999999988888753 2344567999999999999999999998543110 012333
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
++..+.. ..+.+.+.+....... .+..|+||||+|.|....++.|+.+|+.. ..++.
T Consensus 93 IDAas~r------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP---P~~v~ 151 (830)
T PRK07003 93 MDAASNR------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP---PPHVK 151 (830)
T ss_pred ecccccc------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc---CCCeE
Confidence 3332211 1112222222222111 46789999999999988888898888854 45788
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
||++||... .+...+.|||.. |.|.+++.+++.++|+..++.. ..++++++..|++. ..|++|.+++++.
T Consensus 152 FILaTtd~~----KIp~TIrSRCq~--f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~---A~GsmRdALsLLd 222 (830)
T PRK07003 152 FILATTDPQ----KIPVTVLSRCLQ--FNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA---AQGSMRDALSLTD 222 (830)
T ss_pred EEEEECChh----hccchhhhheEE--EecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 888888755 345689999954 9999999999999999998765 56899999999998 8999999999988
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
++..
T Consensus 223 QAia 226 (830)
T PRK07003 223 QAIA 226 (830)
T ss_pred HHHH
Confidence 8664
No 50
>KOG0736|consensus
Probab=99.77 E-value=6e-18 Score=174.60 Aligned_cols=194 Identities=18% Similarity=0.320 Sum_probs=145.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
+.+-|-++.-..|.+-+.--+. -++..++|||||||||||.+|+++|-++ ...|+.|.+.++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPEL---- 741 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPEL---- 741 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHH----
Confidence 3455656555555555443111 1234579999999999999999999999 899999999886
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh----------HHHHHHH---HhcCC-CC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ----------DVIYNIL---EYLNK-PK 274 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~----------~~L~~ll---~~~~~-~~ 274 (520)
+++++|+ .++.++++|..+ ..||||||||+|.+.+.+. .++-++| |.+.. ..
T Consensus 742 ------LNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 742 ------LNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred ------HHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 7899998 899999999998 8899999999999999752 2444444 44443 55
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCC-CCCCHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYD-HHQLQEIVQNRLKNNNCFHPDAVQLVARLEPP-TSRSEIFC 352 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~-~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~-~~G~~r~a 352 (520)
..+.|||+||++++++..+.++ .||+ +.+++.+.. .+....||+...++...-.+..+..||+.++. ++|....+
T Consensus 810 ~~VFViGATNRPDLLDpALLRP--GRFD-KLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYs 886 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRP--GRFD-KLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYS 886 (953)
T ss_pred CceEEEecCCCccccChhhcCC--Cccc-eeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHH
Confidence 6899999999999988777655 7887 446777664 45666788877777666667789999999876 67766554
Q ss_pred HHHHHhh
Q psy17062 353 ANHYTNE 359 (520)
Q Consensus 353 l~~l~~a 359 (520)
+|..|
T Consensus 887 --LCSdA 891 (953)
T KOG0736|consen 887 --LCSDA 891 (953)
T ss_pred --HHHHH
Confidence 44444
No 51
>KOG0739|consensus
Probab=99.77 E-value=4.5e-18 Score=157.65 Aligned_cols=194 Identities=18% Similarity=0.322 Sum_probs=146.3
Q ss_pred CCCCCCchHHHHHhhccCCCC-CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCC
Q psy17062 117 APLTPSTPLQLARESLHLSRV-PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDK 195 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~l~~~~~-p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~ 195 (520)
..++....+..+++.|.+..+ |-.|+ .++.. ...+-.++||||||||||+.||+++|.+. +
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFP----------qlFtG--kR~PwrgiLLyGPPGTGKSYLAKAVATEA------n 191 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFP----------QLFTG--KRKPWRGILLYGPPGTGKSYLAKAVATEA------N 191 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccch----------hhhcC--CCCcceeEEEeCCCCCcHHHHHHHHHhhc------C
Confidence 444555566666666665443 22222 11111 22344689999999999999999999998 7
Q ss_pred eEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChH-----------H
Q psy17062 196 FVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQD-----------V 262 (520)
Q Consensus 196 ~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~-----------~ 262 (520)
..|+.|+.+++ ++++.|+ .+..+.++|..+ ..|+||||||||.++..+.+ .
T Consensus 192 STFFSvSSSDL----------vSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTE 255 (439)
T KOG0739|consen 192 STFFSVSSSDL----------VSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTE 255 (439)
T ss_pred CceEEeehHHH----------HHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHH
Confidence 78888888776 6888888 777888888877 89999999999999876421 2
Q ss_pred HHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q psy17062 263 IYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARL 341 (520)
Q Consensus 263 L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~ 341 (520)
|+--|.........+.|+++||.+.. |+.++++||. .+|++|-|....+..+++.++... ..+++..+..|++.
T Consensus 256 fLVQMqGVG~d~~gvLVLgATNiPw~----LDsAIRRRFe-kRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 256 FLVQMQGVGNDNDGVLVLGATNIPWV----LDSAIRRRFE-KRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARK 330 (439)
T ss_pred HHHhhhccccCCCceEEEecCCCchh----HHHHHHHHhh-cceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhh
Confidence 33334444456778999999998874 4556777776 459999999999999999999876 67889999999999
Q ss_pred cCCCCCCH
Q psy17062 342 EPPTSRSE 349 (520)
Q Consensus 342 ~~~~~G~~ 349 (520)
+.||+|..
T Consensus 331 TeGySGsD 338 (439)
T KOG0739|consen 331 TEGYSGSD 338 (439)
T ss_pred cCCCCcCc
Confidence 99999963
No 52
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.77 E-value=9.4e-18 Score=162.73 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=119.6
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR 240 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~ 240 (520)
-+.+..++||||||||||.+|+++|+++ +..++.+++.++ .+++.|+ .++.++..|..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL----------~sk~vGE------sEk~IR~~F~~ 202 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGEL----------ESENAGE------PGKLIRQRYRE 202 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHh----------hcCcCCc------HHHHHHHHHHH
Confidence 3677889999999999999999999999 999999999876 4666676 66777777765
Q ss_pred C-------CCceEEEEcCCccccccCh------------HHHHHHHHhc-----------CCCCCcEEEEEEEcCCCCch
Q psy17062 241 P-------HGPCVLLIDELDYLCNKRQ------------DVIYNILEYL-----------NKPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 241 ~-------~~~~vLiiDEid~l~~~~~------------~~L~~ll~~~-----------~~~~~~v~vI~~tn~~~~~~ 290 (520)
+ ..||||||||||.+...+. ..|+++++.+ .....++.||+++|+++.++
T Consensus 203 A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred HHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 5 4799999999999987531 1244444421 12356799999999998665
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCC
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPT 345 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~ 345 (520)
..+.+. .||.. .|..|+.+++.+|++.+++. ..++.+.+..|+..+.+.
T Consensus 283 pALlRp--GRfDk---~i~lPd~e~R~eIL~~~~r~-~~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 283 APLIRD--GRMEK---FYWAPTREDRIGVVHGIFRD-DGVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HhHcCC--CCCCc---eeCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHcCCCC
Confidence 443221 38864 24578999999999999988 456788899999886653
No 53
>KOG0737|consensus
Probab=99.76 E-value=5.6e-18 Score=162.56 Aligned_cols=171 Identities=18% Similarity=0.259 Sum_probs=133.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
+++.++||+||||||||.+|++++++. +..++-|.++.+++ +++|+ ..+.+..+|.-+
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~----------KWfgE------~eKlv~AvFslA 182 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTS----------KWFGE------AQKLVKAVFSLA 182 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccch----------hhHHH------HHHHHHHHHhhh
Confidence 466789999999999999999999998 89999999998864 44454 566666677666
Q ss_pred --CCceEEEEcCCccccccChH-----------HHHHHHHhc-CCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEE
Q psy17062 242 --HGPCVLLIDELDYLCNKRQD-----------VIYNILEYL-NKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLM 307 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~~-----------~L~~ll~~~-~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~ 307 (520)
-.|+||||||+|.+...++. .|..+=+.+ .....+|+|+|+||++..++ .++.+|+. ++++
T Consensus 183 sKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD----eAiiRR~p-~rf~ 257 (386)
T KOG0737|consen 183 SKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD----EAIIRRLP-RRFH 257 (386)
T ss_pred hhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHH----HHHHHhCc-ceee
Confidence 68999999999999865421 122222333 23345799999999987654 45566664 4588
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 308 FKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 308 ~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
++-|+..++.+||+-.++....-++..+..+|..+.||+|...+ ++|..|+-
T Consensus 258 V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk--elC~~Aa~ 309 (386)
T KOG0737|consen 258 VGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK--ELCRLAAL 309 (386)
T ss_pred eCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH--HHHHHHhH
Confidence 88999999999999999987777888999999999999998665 57777664
No 54
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=5.4e-17 Score=161.80 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=139.9
Q ss_pred CCCCCC---CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 134 LSRVPE---SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 134 ~~~~p~---~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
..|.|. .++|++..+..|..++. .+...++||+||||||||++|+++++++..... ...++++++++.....
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR----DGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 344554 47899888887776654 344567999999999999999999999854321 2346777776543211
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcC-CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTR-PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~-~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
.+..++..+ ....... .....|+||||+|.|....++.|+..++.+. ....+|.++|...
T Consensus 80 -~vr~~i~~~-------------~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~---~~t~~il~~n~~~-- 140 (319)
T PLN03025 80 -VVRNKIKMF-------------AQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS---NTTRFALACNTSS-- 140 (319)
T ss_pred -HHHHHHHHH-------------HhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc---CCceEEEEeCCcc--
Confidence 111111110 0000000 1357899999999999989999999998542 2344666677544
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
.+.+.+.+||.. +.|++++.+++..+|+..++.. ..++++++++|+.. +.||+|.+++.++.+.
T Consensus 141 --~i~~~L~SRc~~--i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~---~~gDlR~aln~Lq~~~ 205 (319)
T PLN03025 141 --KIIEPIQSRCAI--VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFT---ADGDMRQALNNLQATH 205 (319)
T ss_pred --ccchhHHHhhhc--ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 245678899965 9999999999999999998765 67899999999998 8899999999998543
No 55
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=1.4e-17 Score=183.51 Aligned_cols=196 Identities=16% Similarity=0.251 Sum_probs=146.7
Q ss_pred CCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
+.+.|.+...+.|.+.+...+ ....+.++|||||||||||++|++++.++ +.+++.+++.++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l--- 523 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEI--- 523 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH---
Confidence 457788887777777665321 12456789999999999999999999998 889999988764
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC---------hHHHHHHHHhcC--CCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR---------QDVIYNILEYLN--KPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~---------~~~L~~ll~~~~--~~~~~ 276 (520)
+.++.|+ ....++.+|..+ ..|+||||||+|.+...+ ..++.+++..+. ....+
T Consensus 524 -------~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 524 -------LSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -------hhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 4556565 566677777766 679999999999997543 224455554442 23568
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++||++||.++.++..+.++ +||+. .|+|+.|+.+++.+|++.+++.....++..++.+|..+.+++|....+ +|
T Consensus 591 v~vI~aTn~~~~ld~allRp--gRfd~-~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~--~~ 665 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRP--GRFDR-LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA--VC 665 (733)
T ss_pred EEEEEeCCChhhCCHhhcCC--Cccce-EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH--HH
Confidence 99999999988655433211 58874 499999999999999999888766556678999999999998876654 56
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.|+.
T Consensus 666 ~~A~~ 670 (733)
T TIGR01243 666 REAAM 670 (733)
T ss_pred HHHHH
Confidence 66654
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.2e-17 Score=170.53 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=139.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-----------------------C
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-----------------------K 195 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-----------------------~ 195 (520)
+.++|++..++.|.+++.. ++.+..+||+|++|+|||++++.+++.+.+.... .
T Consensus 16 ddVIGQe~vv~~L~~al~~---gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ---QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 4589999999988888864 3344567999999999999999999999652100 0
Q ss_pred eEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCC
Q psy17062 196 FVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKP 273 (520)
Q Consensus 196 ~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~ 273 (520)
..+++++..+. ...+++.+.+....... ++..|+||||+|.|....++.|+..|+..
T Consensus 93 pDviEIdAas~------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP--- 151 (700)
T PRK12323 93 VDYIEMDAASN------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP--- 151 (700)
T ss_pred CcceEeccccc------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC---
Confidence 12233332211 11222333333322211 56789999999999988888888888753
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
..++.||++|+... .+...+.|||.. +.|.+++.+++.+.|+..+... ..+++++++.|++. ..|++|.+
T Consensus 152 P~~v~FILaTtep~----kLlpTIrSRCq~--f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~---A~Gs~RdA 222 (700)
T PRK12323 152 PEHVKFILATTDPQ----KIPVTVLSRCLQ--FNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA---AQGSMRDA 222 (700)
T ss_pred CCCceEEEEeCChH----hhhhHHHHHHHh--cccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHH
Confidence 46778888888654 356789999965 9999999999999999988764 56788999999998 89999999
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
++++.++..
T Consensus 223 LsLLdQaia 231 (700)
T PRK12323 223 LSLTDQAIA 231 (700)
T ss_pred HHHHHHHHH
Confidence 999987553
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=5.5e-17 Score=170.42 Aligned_cols=189 Identities=16% Similarity=0.214 Sum_probs=139.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|+++.++.+..++.....+.+..++||+||||||||++|+++++++ +..++++++++..+...+ ..++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~r~~~~i-~~~i~~ 87 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQRTADVI-ERVAGE 87 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEcccccccHHHH-HHHHHH
Confidence 4899999999999999987666667889999999999999999999998 889999999876542211 111111
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc----ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhh
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK----RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKG 295 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~----~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~ 295 (520)
... ....+. ..+.||||||+|.+... ..+.|..+++ ..+..+|+++|...... ..
T Consensus 88 ~~~-----------~~sl~~--~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-----~~~~~iIli~n~~~~~~---~k 146 (482)
T PRK04195 88 AAT-----------SGSLFG--ARRKLILLDEVDGIHGNEDRGGARAILELIK-----KAKQPIILTANDPYDPS---LR 146 (482)
T ss_pred hhc-----------cCcccC--CCCeEEEEecCcccccccchhHHHHHHHHHH-----cCCCCEEEeccCccccc---hh
Confidence 100 000110 25789999999999763 2344555555 23344566677654322 22
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+||.. |.|++|+..++..+|+..+... ..+++++++.|+.. ..||+|.+++.++..+.
T Consensus 147 ~Lrsr~~~--I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~---s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 147 ELRNACLM--IEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAER---SGGDLRSAINDLQAIAE 208 (482)
T ss_pred hHhccceE--EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHhc
Confidence 56778754 9999999999999999998765 56899999999998 78999999999987543
No 58
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=1.1e-16 Score=156.12 Aligned_cols=201 Identities=19% Similarity=0.176 Sum_probs=137.0
Q ss_pred CCCchHHHHHHHHHHHHHH-----hh------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCC
Q psy17062 140 SLPCREAEFQSIHRFLLSK-----IS------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIP 207 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~-----~~------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~ 207 (520)
.++|.+...++|.++..-. .. ..++.+++|+||||||||++|+++++.+...+.. ..+++++++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l- 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL- 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH-
Confidence 3578766555554432211 01 1134489999999999999999999998654321 236888886543
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc---------ChHHHHHHHHhcCCCCCcEE
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK---------RQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~---------~~~~L~~ll~~~~~~~~~v~ 278 (520)
+..+.|.. ...+...|..+ .+++|||||++.|... .++.|+++++ ....+++
T Consensus 102 ---------~~~~~g~~------~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le---~~~~~~~ 162 (284)
T TIGR02880 102 ---------VGQYIGHT------APKTKEILKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME---NQRDDLV 162 (284)
T ss_pred ---------hHhhcccc------hHHHHHHHHHc-cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh---cCCCCEE
Confidence 34555542 12334445444 4589999999988422 2345556665 3356788
Q ss_pred EEEEEcCCCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcC-----CCCCCHHH
Q psy17062 279 ILCIANTMDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEP-----PTSRSEIF 351 (520)
Q Consensus 279 vI~~tn~~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~-----~~~G~~r~ 351 (520)
+|++++...... ..+++.|.+||.. .|+||+|+.+++.+|+..++++. ..+++++++.+...+. .+.||.|.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~-~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~ 241 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAH-HVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARS 241 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCc-EEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHH
Confidence 888776432211 1246889999974 49999999999999999999876 5678888888876533 58899999
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
+.++++.+..
T Consensus 242 lrn~ve~~~~ 251 (284)
T TIGR02880 242 IRNAIDRARL 251 (284)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9e-17 Score=167.68 Aligned_cols=190 Identities=18% Similarity=0.160 Sum_probs=138.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++...+.|..++.. +..+..+||+||+|||||++|+.+|+.+.+.... ...+++
T Consensus 15 ddVIGQe~vv~~L~~aI~~---grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 15 NELVGQNHVSRALSSALER---GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 4589999998888888763 3445678999999999999999999998542110 113444
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR--PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~--~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++.+-.. ...+.+.+...-.. .++..|+||||+|.|....++.|+..++.. ...+.
T Consensus 92 IDAAs~~~------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP---P~~v~ 150 (702)
T PRK14960 92 IDAASRTK------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP---PEHVK 150 (702)
T ss_pred ecccccCC------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC---CCCcE
Confidence 44432211 11122222111111 146789999999999988888899988854 45677
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+...+.+||.. +.|.+++.+++.+.|...+... ..++++++..|++. ..|++|.+++++.
T Consensus 151 FILaTtd~~----kIp~TIlSRCq~--feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~---S~GdLRdALnLLD 221 (702)
T PRK14960 151 FLFATTDPQ----KLPITVISRCLQ--FTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES---AQGSLRDALSLTD 221 (702)
T ss_pred EEEEECChH----hhhHHHHHhhhe--eeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 777776543 245577799965 9999999999999999999765 67899999999998 8899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 222 QaIa 225 (702)
T PRK14960 222 QAIA 225 (702)
T ss_pred HHHH
Confidence 7654
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-16 Score=170.48 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=136.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..+..|.+++.. ++.+..+||+||+|||||++|+.+++.+.+.... ...+++
T Consensus 16 ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 5689999999888877753 2334446899999999999999999998553110 011222
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++.+. .....+.+.+ ..+... ++..|+||||+|.|....++.|+..|+.+ ..++
T Consensus 93 idAas~------------------~kVDdIReLi-e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP---P~~v 150 (944)
T PRK14949 93 VDAASR------------------TKVDDTRELL-DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP---PEHV 150 (944)
T ss_pred eccccc------------------cCHHHHHHHH-HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc---CCCe
Confidence 222210 1111122211 111111 56789999999999988889999999854 4567
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
.+|++|+... .+...+.+||.. ++|.+++.+++.+.|+.++... ..+++++++.|++. ..|++|.++++|
T Consensus 151 rFILaTTe~~----kLl~TIlSRCq~--f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~---S~Gd~R~ALnLL 221 (944)
T PRK14949 151 KFLLATTDPQ----KLPVTVLSRCLQ--FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA---ANGSMRDALSLT 221 (944)
T ss_pred EEEEECCCch----hchHHHHHhheE--EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 7777776544 245678899954 9999999999999999988754 67899999999998 899999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
..+..
T Consensus 222 dQala 226 (944)
T PRK14949 222 DQAIA 226 (944)
T ss_pred HHHHH
Confidence 87653
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.73 E-value=1.2e-16 Score=164.61 Aligned_cols=184 Identities=16% Similarity=0.276 Sum_probs=136.6
Q ss_pred CCCCchHHHHHH---HHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHH
Q psy17062 139 ESLPCREAEFQS---IHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSR 215 (520)
Q Consensus 139 ~~l~gr~~ei~~---l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~ 215 (520)
+.++|++..+.. +..++ ......+++|+||||||||++|+.+++.+ +..++.+++.... ...+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i----~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~~~--~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMI----EAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVTSG--VKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHH----HcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccc--HHHHHH
Confidence 457899887766 55555 34455689999999999999999999988 7788888876432 111111
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhh
Q psy17062 216 ILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKG 295 (520)
Q Consensus 216 i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~ 295 (520)
++ +...... ..+...||||||+|.+....++.|+..++ ...+++|++++.. ....+.+
T Consensus 80 ii--------------~~~~~~~-~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----~~~iilI~att~n--~~~~l~~ 137 (413)
T PRK13342 80 VI--------------EEARQRR-SAGRRTILFIDEIHRFNKAQQDALLPHVE-----DGTITLIGATTEN--PSFEVNP 137 (413)
T ss_pred HH--------------HHHHHhh-hcCCceEEEEechhhhCHHHHHHHHHHhh-----cCcEEEEEeCCCC--hhhhccH
Confidence 11 1111111 11467899999999999888889988887 4567777765432 2223677
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---C-CCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---N-CFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~-~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+||.. +.|++++.+++..++...+... . .+++++++.|++. ..||+|.++++++.++.
T Consensus 138 aL~SR~~~--~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~---s~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 138 ALLSRAQV--FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARL---ANGDARRALNLLELAAL 202 (413)
T ss_pred HHhcccee--eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 89999954 9999999999999999987642 2 6889999999998 68999999999998754
No 62
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=2e-16 Score=154.07 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=121.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.+.+++|+||||||||++|+++++.+...+.. ..+++++++.++ ...+.|.. .......+..+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l----------~~~~~g~~------~~~~~~~l~~a 121 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL----------VGQYIGHT------APKTKEVLKKA 121 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH----------HHHHhccc------hHHHHHHHHHc
Confidence 35579999999999999999999988654221 235777775543 45555542 12233444443
Q ss_pred CCceEEEEcCCcccccc---------ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchh-hhhhhhhccCCcceEEeCCC
Q psy17062 242 HGPCVLLIDELDYLCNK---------RQDVIYNILEYLNKPKSRLIILCIANTMDLPER-TLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~---------~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~-~l~~~l~sR~~~~~i~~~~~ 311 (520)
.+.||||||++.+... .++.|+.+++ ....+++||++++...+... .+++.+.+||.. .|.|++|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me---~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~-~i~F~~~ 196 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME---NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN-HVDFPDY 196 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh---cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc-eEEcCCc
Confidence 4579999999998432 2334555554 33466888887765332221 135789999974 5999999
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcC-----CCCCCHHHHHHHHHhhhc
Q psy17062 312 DHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEP-----PTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 312 ~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~-----~~~G~~r~al~~l~~a~~ 361 (520)
+.+++.+|+...+++. ..+++++...+...+. ...||.|.+.++++.+..
T Consensus 197 t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 197 TPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred CHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 9999999999999865 4567776665555432 256889999999988775
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.72 E-value=1.5e-16 Score=171.91 Aligned_cols=188 Identities=17% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..+.. ...|...+..+...+++|+||||||||++|+.+++.+ +..++.+++....- .. ...
T Consensus 28 dd~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~~~i-~d-ir~--- 95 (725)
T PRK13341 28 EEFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVLAGV-KD-LRA--- 95 (725)
T ss_pred HHhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhhhhh-HH-HHH---
Confidence 457898887753 2233333344556789999999999999999999987 66778888753210 00 000
Q ss_pred HHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVS 298 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~ 298 (520)
........+.......+|||||+|.+....++.|+..++ .+.+++|++++.. ....+.+++.
T Consensus 96 -----------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI~aTTen--p~~~l~~aL~ 157 (725)
T PRK13341 96 -----------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLIGATTEN--PYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEEEecCCC--hHhhhhhHhh
Confidence 111111112222457899999999999888888888887 4567788766542 2223678899
Q ss_pred ccCCcceEEeCCCCHHHHHHHHHHHHhC-------C-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 299 SRMGLTRLMFKPYDHHQLQEIVQNRLKN-------N-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 299 sR~~~~~i~~~~~~~~~~~~Il~~~l~~-------~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
||+.. +.|++++.+++..+++..+.. . ..+++++++.|++. ..||+|.++++++.++.
T Consensus 158 SR~~v--~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~---s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 158 SRSRL--FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDV---ANGDARSLLNALELAVE 223 (725)
T ss_pred ccccc--eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 99865 999999999999999998872 2 57899999999998 68999999999998764
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.7e-16 Score=164.19 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=134.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++.....|...+.. +..+..+||+||||||||++|+.+++.+...... ...++.
T Consensus 14 ~divGq~~i~~~L~~~i~~---~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK---NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4589998887766666543 2344568999999999999999999998542110 113445
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++...... ..+. .+....... ....||||||+|.|....++.|+..++.. ...+
T Consensus 91 l~aa~~~gi------------------d~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p---~~~v 148 (472)
T PRK14962 91 LDAASNRGI------------------DEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP---PSHV 148 (472)
T ss_pred EeCcccCCH------------------HHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC---CCcE
Confidence 544322110 1111 111111111 46789999999999877777777777743 4567
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++... .+.+++.+||.. +.|.+++.+++..+++..+... ..+++++++.|+.. ..||+|.+++.+
T Consensus 149 v~Ilattn~~----kl~~~L~SR~~v--v~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~---s~GdlR~aln~L 219 (472)
T PRK14962 149 VFVLATTNLE----KVPPTIISRCQV--IEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR---ASGGLRDALTML 219 (472)
T ss_pred EEEEEeCChH----hhhHHHhcCcEE--EEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hCCCHHHHHHHH
Confidence 7777776433 357789999964 9999999999999999998764 57899999999997 789999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.+..
T Consensus 220 e~l~~ 224 (472)
T PRK14962 220 EQVWK 224 (472)
T ss_pred HHHHH
Confidence 98654
No 65
>KOG0991|consensus
Probab=99.72 E-value=5.4e-17 Score=145.61 Aligned_cols=192 Identities=18% Similarity=0.262 Sum_probs=143.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|.++.++++.-+. ..+..++++|.||||+||||.+.++|++|..... .-.++++|+++-..
T Consensus 27 ~dIVGNe~tv~rl~via----~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRG---------- 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIA----KEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERG---------- 91 (333)
T ss_pred HHhhCCHHHHHHHHHHH----HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCccccc----------
Confidence 35789999988877655 4566788999999999999999999999865432 34567888877542
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC-CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKV 297 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l 297 (520)
.....+.+...-.+..... ++..|+|+||+|.+....|..|...++.+. +..++. .++|..+ .+..++
T Consensus 92 ----IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-~ttRFa--laCN~s~----KIiEPI 160 (333)
T KOG0991|consen 92 ----IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-NTTRFA--LACNQSE----KIIEPI 160 (333)
T ss_pred ----cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-ccchhh--hhhcchh----hhhhhH
Confidence 1111111111111122222 678899999999999999999999999775 344544 4557654 356689
Q ss_pred hccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 298 SSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 298 ~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.|||.. ++|..++..++..-|....+.. ..++++.++.+.-. ..||+|++++.++....
T Consensus 161 QSRCAi--LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiift---a~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 161 QSRCAI--LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFT---AQGDMRQALNNLQSTVN 220 (333)
T ss_pred HhhhHh--hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhh---ccchHHHHHHHHHHHhc
Confidence 999976 9999999999888777776654 78899999999876 89999999999998764
No 66
>KOG0726|consensus
Probab=99.71 E-value=7.9e-18 Score=155.56 Aligned_cols=196 Identities=18% Similarity=0.256 Sum_probs=149.0
Q ss_pred CCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 140 SLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
.+-|-+.++++|.+.+.--+. -.++.+++|||+||||||.||+++|+.- ...|+.+-++++
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRvvGseL---- 255 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRVVGSEL---- 255 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhhhhHHH----
Confidence 467889999999887765332 2578899999999999999999999976 667777777664
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--CCCCC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL--NKPKS 275 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~--~~~~~ 275 (520)
+.++.|. .-...+++|.-+ ..|+|+||||||.+..++ |..++.+|+.+ ....+
T Consensus 256 ------iQkylGd------GpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg 323 (440)
T KOG0726|consen 256 ------IQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323 (440)
T ss_pred ------HHHHhcc------chHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC
Confidence 6777776 445566666666 789999999999998764 33566666655 23577
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
.+.||.+||..+.++..+.++ .|++- .|.|+.|+......|+.-+...+....+..++.+...-...+|...+| +
T Consensus 324 DvKvimATnrie~LDPaLiRP--GrIDr-KIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA--i 398 (440)
T KOG0726|consen 324 DVKVIMATNRIETLDPALIRP--GRIDR-KIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA--I 398 (440)
T ss_pred CeEEEEecccccccCHhhcCC--Ccccc-ccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHH--H
Confidence 899999999999887666543 56653 499999999999999998887765556666777766556678877776 6
Q ss_pred HHhhhcc
Q psy17062 356 YTNEKKS 362 (520)
Q Consensus 356 l~~a~~~ 362 (520)
|..|+..
T Consensus 399 ctEaGll 405 (440)
T KOG0726|consen 399 CTEAGLL 405 (440)
T ss_pred HHHHhHH
Confidence 7777653
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3.4e-16 Score=165.79 Aligned_cols=190 Identities=22% Similarity=0.215 Sum_probs=137.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEE
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYV 199 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i 199 (520)
.+.++|++..+..|...+.. +..+..+||+||+|||||++|+.+++.+.+.... ...++
T Consensus 15 f~divGQe~vv~~L~~~l~~---~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDL---GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 35689999999888877754 2334446899999999999999999999663210 01122
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
++++.+. .....+.+.+....... +...|+||||+|.|....++.|+..|+.+ ..++
T Consensus 92 eidaas~------------------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP---p~~v 150 (647)
T PRK07994 92 EIDAASR------------------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHV 150 (647)
T ss_pred eeccccc------------------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC---CCCe
Confidence 2322210 11122222222211111 56789999999999998999999999854 4577
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
.+|++|+... .+...+.|||.. ++|.+++.+++...|...+... ..++++++..|+.. ..|++|.+++++
T Consensus 151 ~FIL~Tt~~~----kLl~TI~SRC~~--~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~---s~Gs~R~Al~ll 221 (647)
T PRK07994 151 KFLLATTDPQ----KLPVTILSRCLQ--FHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA---ADGSMRDALSLT 221 (647)
T ss_pred EEEEecCCcc----ccchHHHhhheE--eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 7888777654 355678999854 9999999999999999988654 56889999999998 899999999999
Q ss_pred Hhhh
Q psy17062 357 TNEK 360 (520)
Q Consensus 357 ~~a~ 360 (520)
+.+.
T Consensus 222 dqai 225 (647)
T PRK07994 222 DQAI 225 (647)
T ss_pred HHHH
Confidence 7654
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=99.70 E-value=3.9e-16 Score=147.86 Aligned_cols=168 Identities=10% Similarity=0.090 Sum_probs=116.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
...+.++|+||||||||+|++++++++... +..+++++...... . .. ..+...
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~~---~-----------------~~----~~~~~~ 89 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQY---F-----------------SP----AVLENL 89 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhhh---h-----------------hH----HHHhhc
Confidence 344568999999999999999999998665 34455555532110 0 00 111222
Q ss_pred CCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHH
Q psy17062 242 HGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQE 318 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~ 318 (520)
....+|+|||++.+.... +..|+++++........+++++....+..+. ...+.+.+|+.. ..+.+++|+.+++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~-~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS-IKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc-ccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 466899999999986543 4568888876543333343443333333333 234688898852 258899999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 319 IVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 319 Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
||+..+... ..++++++++|++. ..||+|.++.++....
T Consensus 169 iL~~~a~~~~l~l~~~v~~~L~~~---~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 169 VLQRNAYQRGIELSDEVANFLLKR---LDRDMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHH
Confidence 999888644 67899999999998 8899999888887653
No 69
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-16 Score=167.60 Aligned_cols=173 Identities=18% Similarity=0.272 Sum_probs=138.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
..+.++|||||||||||++|++++.++ +.+++.+.+.++ ++++.|+ +.+.++..|..+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l----------~sk~vGe------sek~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSEL----------LSKWVGE------SEKNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHH----------hccccch------HHHHHHHHHHHH
Confidence 456689999999999999999999988 899999999865 5677776 788888888887
Q ss_pred --CCceEEEEcCCccccccCh--------HHHHHHHHhcC--CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeC
Q psy17062 242 --HGPCVLLIDELDYLCNKRQ--------DVIYNILEYLN--KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFK 309 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~--------~~L~~ll~~~~--~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~ 309 (520)
..|+||||||+|.+...+. .++.+++.++. ....++.+|++||.++.++..+.+. .||. ..|.|+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~--gRfd-~~i~v~ 408 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRP--GRFD-RLIYVP 408 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhccc--Cccc-eEeecC
Confidence 7899999999999998643 46777777663 3556789999999998766443322 4887 459999
Q ss_pred CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 310 PYDHHQLQEIVQNRLKNNN--CFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 310 ~~~~~~~~~Il~~~l~~~~--~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+|+.+++.+|++.++.... ...+..++.+++.+.+++|.... .+|+.|+.
T Consensus 409 ~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~--~i~~ea~~ 460 (494)
T COG0464 409 LPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA--ALVREAAL 460 (494)
T ss_pred CCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHH--HHHHHHHH
Confidence 9999999999999998642 35678899999998888886555 36666654
No 70
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7e-16 Score=158.89 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=140.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.|...+.. +..+..+||+||+|+|||++|+.+|+.+.+..+. ...+++
T Consensus 13 ~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 4589999888877766643 3455689999999999999999999988543211 334566
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++.+... .+++.+.+...-... ....|+||||+|.|....++.|+..|+.+ ...+.
T Consensus 90 idaas~~~------------------vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP---p~~v~ 148 (491)
T PRK14964 90 IDAASNTS------------------VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP---APHVK 148 (491)
T ss_pred EecccCCC------------------HHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC---CCCeE
Confidence 66643322 111222222211111 57789999999999888888888888754 45677
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+...+.+||.. +.|.+++.+++..++...++.. ..+++++++.|++. ..|++|.+++.++
T Consensus 149 fIlatte~~----Kl~~tI~SRc~~--~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~---s~GslR~alslLd 219 (491)
T PRK14964 149 FILATTEVK----KIPVTIISRCQR--FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN---SSGSMRNALFLLE 219 (491)
T ss_pred EEEEeCChH----HHHHHHHHhhee--eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 888776443 256688999965 9999999999999999998775 67899999999998 7899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 220 qli~ 223 (491)
T PRK14964 220 QAAI 223 (491)
T ss_pred HHHH
Confidence 8764
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.70 E-value=5.7e-17 Score=175.00 Aligned_cols=247 Identities=16% Similarity=0.250 Sum_probs=154.0
Q ss_pred CCchHHHHHHHHHHHHHH--------hhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHH
Q psy17062 141 LPCREAEFQSIHRFLLSK--------ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~--------~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~ 212 (520)
+.|.+...+++.+.+... .....+.+++|+||||||||+++++++.++ +.+++.+++.++.
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is~~~~~----- 222 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDFV----- 222 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEehHHhH-----
Confidence 456655555555444321 112345679999999999999999999998 8899999887653
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CCCCcE
Q psy17062 213 YSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KPKSRL 277 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~~~~v 277 (520)
..+.|. ....+...|..+ ..|+||||||+|.+...+ ...+.++|..+. ....++
T Consensus 223 -----~~~~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 223 -----EMFVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred -----Hhhhcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 223333 222344444444 579999999999996542 125566654432 234578
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
++|++||.++.++..+.++ .||+. .|.|+.|+.+++.+|++.++.......+..+..+++.+.+++|.... ++|.
T Consensus 292 ivIaaTN~p~~lD~Al~Rp--gRfdr-~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~--~l~~ 366 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRP--GRFDR-QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA--NLVN 366 (644)
T ss_pred eEEEecCChhhcCHHHhCC--cccce-EEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH--HHHH
Confidence 9999999988665443221 47863 49999999999999999999886555566778899998887775443 3555
Q ss_pred hhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCC
Q psy17062 358 NEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSS 414 (520)
Q Consensus 358 ~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
.|+..+.+.........+.....+.+..+................++|+.+|+....
T Consensus 367 eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~ 423 (644)
T PRK10733 367 EAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGR 423 (644)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 555422221111122222222222222222222222333344567888888876543
No 72
>KOG0732|consensus
Probab=99.70 E-value=2.3e-16 Score=170.46 Aligned_cols=201 Identities=16% Similarity=0.233 Sum_probs=154.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.+.|-+..+.++.+.+..-+. -.++.++|++||||||||..|++++..+..... ++.++.-.+.++
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkgaD~-- 340 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGADC-- 340 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCchh--
Confidence 45577788888888776554332 246788999999999999999999998865432 333333333333
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC---h--------HHHHHHHHhcCCCCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR---Q--------DVIYNILEYLNKPKS 275 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~---~--------~~L~~ll~~~~~~~~ 275 (520)
+++++|+ .++.++-+|.++ ..|+|||+||||-|.+.+ | ..|+.+|+.+. ..+
T Consensus 341 --------lskwvgE------aERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-sRg 405 (1080)
T KOG0732|consen 341 --------LSKWVGE------AERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-SRG 405 (1080)
T ss_pred --------hccccCc------HHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-CCC
Confidence 5777777 788889899988 889999999999887753 2 24777777664 578
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
.++|||+||+++..+..+. ...||. ++++|+.++.+.+.+|+..+.... ..+....+..+|..+.+|.|...+|
T Consensus 406 qVvvigATnRpda~dpaLR--RPgrfd-ref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlka-- 480 (1080)
T KOG0732|consen 406 QVVVIGATNRPDAIDPALR--RPGRFD-REFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKA-- 480 (1080)
T ss_pred ceEEEcccCCccccchhhc--CCcccc-eeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHH--
Confidence 9999999999997776552 246776 469999999999999999887765 7778899999999999999988554
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
+|..|+.
T Consensus 481 LCTeAal 487 (1080)
T KOG0732|consen 481 LCTEAAL 487 (1080)
T ss_pred HHHHHhh
Confidence 6776664
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.4e-16 Score=162.23 Aligned_cols=190 Identities=21% Similarity=0.172 Sum_probs=138.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.|..++.. +..+..+||+||+|||||++|+.+++.+.+.... ...+++
T Consensus 16 ~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 4589999999988888864 3344568999999999999999999999653210 112444
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++.+.. ....+.+.+...-... ++..|+||||+|.|....++.|+..|+.+ ...+.
T Consensus 93 idaas~~------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep---p~~~~ 151 (509)
T PRK14958 93 VDAASRT------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP---PSHVK 151 (509)
T ss_pred EcccccC------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc---CCCeE
Confidence 4433211 1112222222211111 56789999999999998888888888854 45677
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++|++.. .+...+.+||.. ++|.+++.+++...+...++.. ..+++++++.|++. ..|++|.++++++
T Consensus 152 fIlattd~~----kl~~tI~SRc~~--~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~---s~GslR~al~lLd 222 (509)
T PRK14958 152 FILATTDHH----KLPVTVLSRCLQ--FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA---ANGSVRDALSLLD 222 (509)
T ss_pred EEEEECChH----hchHHHHHHhhh--hhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHHHHHHHH
Confidence 888776543 245568999965 9999999999999999998765 56899999999998 7899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 223 q~ia 226 (509)
T PRK14958 223 QSIA 226 (509)
T ss_pred HHHh
Confidence 7653
No 74
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.70 E-value=1.6e-16 Score=164.06 Aligned_cols=168 Identities=19% Similarity=0.343 Sum_probs=113.0
Q ss_pred CCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEcccc
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALS 205 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~ 205 (520)
+.+.|.+.+++++.+.+.-.. .-.++.++|||||||||||++++++++++...... ...++.+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 457889999999988875421 12456789999999999999999999998432100 12233333332
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC------CCceEEEEcCCccccccCh---------HHHHHHHHhc
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP------HGPCVLLIDELDYLCNKRQ---------DVIYNILEYL 270 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~------~~~~vLiiDEid~l~~~~~---------~~L~~ll~~~ 270 (520)
+ +.++.|+ ....++.+|..+ ..|+||||||+|.+...+. ..+.+++..+
T Consensus 262 L----------l~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 L----------LNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----------cccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 2 2333333 233333333332 4799999999999976431 2344555443
Q ss_pred C--CCCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCC
Q psy17062 271 N--KPKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNN 327 (520)
Q Consensus 271 ~--~~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~ 327 (520)
. ....+++||++||+.+.++ +++.+ ||... |+|++|+.+++.+|++.++...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LD----pALlRpGRfD~~-I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMID----PAILRPGRLDVK-IRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred cccccCCceEEEeccCChhhCC----HhhcCccccceE-EEeCCCCHHHHHHHHHHHhhcc
Confidence 2 1236799999999988554 45554 88754 9999999999999999998754
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.5e-15 Score=153.78 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=134.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.+...+.. +..+..+||+||+|+|||++|+.+++.+...... ...+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 4689999998888777753 2344557999999999999999999998532100 012222
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++... .....+.+.+. .+... ....|+||||+|.+....++.|+..++.+ ...+
T Consensus 93 ~~~~~~------------------~~v~~ir~i~~-~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~---~~~~ 150 (363)
T PRK14961 93 IDAASR------------------TKVEEMREILD-NIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP---PQHI 150 (363)
T ss_pred eccccc------------------CCHHHHHHHHH-HHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC---CCCe
Confidence 222110 11111222121 21111 45679999999999887777888888753 4466
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
.+|++++..+ .+.+.+.+||.. +.|++++.+++.+++...++.. ..+++++++.|+.. ..|++|.+++.+
T Consensus 151 ~fIl~t~~~~----~l~~tI~SRc~~--~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~---s~G~~R~al~~l 221 (363)
T PRK14961 151 KFILATTDVE----KIPKTILSRCLQ--FKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH---AHGSMRDALNLL 221 (363)
T ss_pred EEEEEcCChH----hhhHHHHhhceE--EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 7777776543 256788999954 9999999999999999988775 46899999999998 789999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.+..
T Consensus 222 ~~~~~ 226 (363)
T PRK14961 222 EHAIN 226 (363)
T ss_pred HHHHH
Confidence 98764
No 76
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.8e-17 Score=172.03 Aligned_cols=248 Identities=14% Similarity=0.138 Sum_probs=185.3
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEE
Q psy17062 96 STPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-----STTGCMYIS 170 (520)
Q Consensus 96 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~ 170 (520)
+++......+..+..+|... ........+....+.++. .++|++..+..+.+.+.....+ ++.+++||.
T Consensus 454 v~~~~Ia~vv~~~TgIPv~~-l~~~e~~kll~le~~L~~-----rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~ 527 (786)
T COG0542 454 VDEDDIAEVVARWTGIPVAK-LLEDEKEKLLNLERRLKK-----RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFL 527 (786)
T ss_pred cCHHHHHHHHHHHHCCChhh-hchhhHHHHHHHHHHHhc-----ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEee
Confidence 56666677777888888763 444555666666655554 4679999999999999997554 455789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEE
Q psy17062 171 GVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVL 247 (520)
Q Consensus 171 G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vL 247 (520)
||+|||||.||+++|..|... ...++.+|++++...+.+ +.|.|.+..+....+ ...+.++ +.++||
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHsV-----SrLIGaPPGYVGyee--GG~LTEaVRr~PySVi 597 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHSV-----SRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVI 597 (786)
T ss_pred CCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHHH-----HHHhCCCCCCceecc--ccchhHhhhcCCCeEE
Confidence 999999999999999999654 578999999998765544 667787766544433 3344444 568999
Q ss_pred EEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC------------------------Cchhhhhh
Q psy17062 248 LIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMD------------------------LPERTLKG 295 (520)
Q Consensus 248 iiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~------------------------~~~~~l~~ 295 (520)
+||||+..++...++|+++|+... ....+.++|.|||--. .+...+.+
T Consensus 598 LlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~P 677 (786)
T COG0542 598 LLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRP 677 (786)
T ss_pred EechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCH
Confidence 999999999999999999998532 1234788999988520 01113457
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
.|.+|++ .+|.|.+++.+.+.+|+...+..+ ..+++++.++|+.........+|-+...++...
T Consensus 678 EFLNRid-~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 678 EFLNRID-EIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHhhcc-cEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 7888987 359999999999999999887764 678999999999997665555666555555543
No 77
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.69 E-value=7e-17 Score=181.66 Aligned_cols=239 Identities=8% Similarity=0.065 Sum_probs=145.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH--HHH-----------------------HH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK--RAY-----------------------SR 215 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~--~~~-----------------------~~ 215 (520)
..++.++||+||||||||.||+++|.++ +++++.+++.++.... ..+ ..
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 3567889999999999999999999998 9999999998765321 000 00
Q ss_pred HHH---HHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChH--HHHHHHHhcC-----CCCCcEEEEEEE
Q psy17062 216 ILE---LLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQD--VIYNILEYLN-----KPKSRLIILCIA 283 (520)
Q Consensus 216 i~~---~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~--~L~~ll~~~~-----~~~~~v~vI~~t 283 (520)
++. .+.+. .........++..|..| ..||||+|||||.+...... .|.+++..+. ....+|+|||+|
T Consensus 1701 ~~e~~n~~~~~-m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1701 LLTMMNALTMD-MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhcchhhhh-hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 000 00000 00000112366677766 78999999999999876432 2444444432 234579999999
Q ss_pred cCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 284 NTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFH--PDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 284 n~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~--~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
|.++.++.++.++ .||+. .|.++.|+..++.+++...+... ..+. ...++.+|+.+.|++|.... .+|.+|+
T Consensus 1780 NRPD~LDPALLRP--GRFDR-~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa--nLvNEAa 1854 (2281)
T CHL00206 1780 HIPQKVDPALIAP--NKLNT-CIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV--ALTNEAL 1854 (2281)
T ss_pred CCcccCCHhHcCC--CCCCe-EEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH--HHHHHHH
Confidence 9999776555433 58874 49999999999988887543211 1222 23578999999999886655 3666666
Q ss_pred ccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCC
Q psy17062 361 KSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSS 414 (520)
Q Consensus 361 ~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
..+...........+...+..+.+.+.... ..... .....++++|++....
T Consensus 1855 liAirq~ks~Id~~~I~~Al~Rq~~g~~~~--~~~~~-~~~ia~yEiGhAvvq~ 1905 (2281)
T CHL00206 1855 SISITQKKSIIDTNTIRSALHRQTWDLRSQ--VRSVQ-DHGILFYQIGRAVAQN 1905 (2281)
T ss_pred HHHHHcCCCccCHHHHHHHHHHHHhhhhhc--ccCcc-hhhhhhhHHhHHHHHH
Confidence 433332222333344444444444443221 11111 1224667777766533
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.6e-15 Score=157.58 Aligned_cols=190 Identities=15% Similarity=0.231 Sum_probs=137.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----------------------Ce
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----------------------KF 196 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----------------------~~ 196 (520)
+.++|++..+..|...+.. +..+..+||+||+|||||++|+.+++.+.+.... ..
T Consensus 21 ~dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 3478999988877776643 3456789999999999999999999998543210 11
Q ss_pred EEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCC
Q psy17062 197 VYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPK 274 (520)
Q Consensus 197 ~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~ 274 (520)
.++++++.+.. ....+.+.+...-... ....|+||||+|.|....++.|+..++. ..
T Consensus 98 Dv~eidaas~~------------------~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe---pp 156 (507)
T PRK06645 98 DIIEIDAASKT------------------SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---PP 156 (507)
T ss_pred cEEEeeccCCC------------------CHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh---cC
Confidence 23333332211 1222222222221111 5678999999999988777778777774 35
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
..+++|++++..+ .+...+.+||.. +.|.+++.+++..+++..++.. ..+++++++.|+.. +.|++|.++
T Consensus 157 ~~~vfI~aTte~~----kI~~tI~SRc~~--~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~---s~GslR~al 227 (507)
T PRK06645 157 PHIIFIFATTEVQ----KIPATIISRCQR--YDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK---SEGSARDAV 227 (507)
T ss_pred CCEEEEEEeCChH----HhhHHHHhcceE--EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHH
Confidence 5777777776543 356678899954 9999999999999999999876 56899999999997 789999999
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
+.++.++.
T Consensus 228 ~~Ldkai~ 235 (507)
T PRK06645 228 SILDQAAS 235 (507)
T ss_pred HHHHHHHH
Confidence 99998854
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=4.9e-16 Score=163.70 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=136.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..+..|..++.. ++.+..+||+||+|||||++|+.+++.+.+.... ...+++
T Consensus 16 ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3589999999988888764 3445678999999999999999999998543110 011223
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC--CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR--PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~--~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++.... ....+.+.+...-.. .....||||||+|.|.....+.|+..|+.. ...+.
T Consensus 93 idaAs~~------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP---p~~v~ 151 (709)
T PRK08691 93 IDAASNT------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP---PEHVK 151 (709)
T ss_pred EeccccC------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC---CCCcE
Confidence 3322111 111122222211110 146789999999999877777888888743 45677
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+...+.+||.. +.|.+++.+++..+|...+... ..+++++++.|++. ..|++|.++++|+
T Consensus 152 fILaTtd~~----kL~~TIrSRC~~--f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~---A~GslRdAlnLLD 222 (709)
T PRK08691 152 FILATTDPH----KVPVTVLSRCLQ--FVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA---AAGSMRDALSLLD 222 (709)
T ss_pred EEEEeCCcc----ccchHHHHHHhh--hhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH---hCCCHHHHHHHHH
Confidence 788787654 244567799954 9999999999999999999876 67899999999998 7899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 223 qaia 226 (709)
T PRK08691 223 QAIA 226 (709)
T ss_pred HHHH
Confidence 8764
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1e-15 Score=159.97 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=135.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..+..|...+.. +..+..+||+||+|+|||++|+.+++.+.+.... ...+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4588999999888877753 2334558899999999999999999988542110 112333
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++.... ......+.+ ..+... +...|+||||+|.|....++.|+..|+.+ ...+
T Consensus 93 idaas~~------------------gvd~ir~ii-~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep---p~~v 150 (546)
T PRK14957 93 IDAASRT------------------GVEETKEIL-DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP---PEYV 150 (546)
T ss_pred eeccccc------------------CHHHHHHHH-HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC---CCCc
Confidence 3332111 111111111 111111 56789999999999988888999999854 4567
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++|+... .+...+.+||.. +.|.+++.+++..+|...+... ..+++++++.|+.. +.|++|.+++++
T Consensus 151 ~fIL~Ttd~~----kil~tI~SRc~~--~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~---s~GdlR~alnlL 221 (546)
T PRK14957 151 KFILATTDYH----KIPVTILSRCIQ--LHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH---AKGSLRDALSLL 221 (546)
T ss_pred eEEEEECChh----hhhhhHHHheee--EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 7777776532 345568999965 9999999999999999988765 57899999999998 789999999999
Q ss_pred Hhhh
Q psy17062 357 TNEK 360 (520)
Q Consensus 357 ~~a~ 360 (520)
+.+.
T Consensus 222 ek~i 225 (546)
T PRK14957 222 DQAI 225 (546)
T ss_pred HHHH
Confidence 8654
No 81
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.6e-15 Score=159.97 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=138.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--------------------CeEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD--------------------KFVY 198 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~--------------------~~~~ 198 (520)
+.++|++..++.|..++.. +..+..+||+||+|||||++|+.+++.+.+.... ...+
T Consensus 13 ~eivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA---GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 4589999998888888753 2334447999999999999999999998643210 1234
Q ss_pred EEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 199 VEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 199 i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
+++++..... .+.+.+......... ....|+||||+|.|....++.|+..|+.+ ...
T Consensus 90 ieidaas~~g------------------vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp---p~~ 148 (584)
T PRK14952 90 VELDAASHGG------------------VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP---PEH 148 (584)
T ss_pred EEeccccccC------------------HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC---CCC
Confidence 4444432211 111222111111111 56789999999999998888888888854 457
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
+++|++++... .+.+.+.|||.. +.|.+++.+++.++|...++.. ..++++++..|++. ..|++|.++++
T Consensus 149 ~~fIL~tte~~----kll~TI~SRc~~--~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~---s~GdlR~aln~ 219 (584)
T PRK14952 149 LIFIFATTEPE----KVLPTIRSRTHH--YPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA---GGGSPRDTLSV 219 (584)
T ss_pred eEEEEEeCChH----hhHHHHHHhceE--EEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHH
Confidence 88888776553 356788999854 9999999999999999998875 56899999999997 78999999999
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
++..+.
T Consensus 220 Ldql~~ 225 (584)
T PRK14952 220 LDQLLA 225 (584)
T ss_pred HHHHHh
Confidence 987643
No 82
>PRK08727 hypothetical protein; Validated
Probab=99.68 E-value=1.1e-15 Score=145.22 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.....++|+|++|||||+++.++++.+... +..+++++..+... . ....+. ..
T Consensus 39 ~~~~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~~~~----------~----------~~~~~~----~l 91 (233)
T PRK08727 39 QSSDWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQAAAG----------R----------LRDALE----AL 91 (233)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHHhhh----------h----------HHHHHH----HH
Confidence 344569999999999999999999998765 56667776543211 0 111111 12
Q ss_pred CCceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHH
Q psy17062 242 HGPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQE 318 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~ 318 (520)
....+|+|||+|.+... .+..|+++++.... .+..+|++++.....-..+.+.+.||+.. ..+.|++|+.+++.+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~--~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARA--AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAA 169 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHH--cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHH
Confidence 36679999999999754 34567777775432 23446666664322112346788899633 258999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 319 IVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 319 Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
|++.++... ..++++++++|++. ..|+++.++++++...
T Consensus 170 iL~~~a~~~~l~l~~e~~~~La~~---~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 170 VLRERAQRRGLALDEAAIDWLLTH---GERELAGLVALLDRLD 209 (233)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 999877543 67899999999998 7799999988887654
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.3e-15 Score=159.17 Aligned_cols=189 Identities=21% Similarity=0.214 Sum_probs=135.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-----------------------C
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-----------------------K 195 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-----------------------~ 195 (520)
+.++|++..+..|.+++.. +..+..+||+||+|||||++++.+++.+.+.... .
T Consensus 16 ~dviGQe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 4589999888888877764 2344557999999999999999999998643110 0
Q ss_pred eEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCC
Q psy17062 196 FVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKP 273 (520)
Q Consensus 196 ~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~ 273 (520)
..++++++.+- ...+.+.+.+....... ++..|+||||+|.|....++.|+..++..
T Consensus 93 ~D~~eldaas~------------------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP--- 151 (618)
T PRK14951 93 VDYTELDAASN------------------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP--- 151 (618)
T ss_pred CceeecCcccc------------------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC---
Confidence 11222222111 11122333332211111 56789999999999988888888877743
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
...+.+|++|+.... +...+.+||.. ++|.+++.+++.+.|+..+... ..++++++..|++. ..|++|.+
T Consensus 152 P~~~~fIL~Ttd~~k----il~TIlSRc~~--~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~---s~GslR~a 222 (618)
T PRK14951 152 PEYLKFVLATTDPQK----VPVTVLSRCLQ--FNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA---ARGSMRDA 222 (618)
T ss_pred CCCeEEEEEECCchh----hhHHHHHhcee--eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHH
Confidence 457778887765442 44568999955 9999999999999999988765 67889999999998 88999999
Q ss_pred HHHHHhhh
Q psy17062 353 ANHYTNEK 360 (520)
Q Consensus 353 l~~l~~a~ 360 (520)
+++++.+.
T Consensus 223 l~lLdq~i 230 (618)
T PRK14951 223 LSLTDQAI 230 (618)
T ss_pred HHHHHHHH
Confidence 99987654
No 84
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-15 Score=165.22 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=138.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--------------------CeEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD--------------------KFVY 198 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~--------------------~~~~ 198 (520)
+.++|++..++.|..++.. +..+..+||+||+|||||++++.|++.|.+.... ...+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 4588999988888888764 2334458999999999999999999999653210 1223
Q ss_pred EEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC-C-CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 199 VEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR-P-HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 199 i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~-~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
+++++.... ..+++.+.....+.. . ....|+||||+|.|....++.|+.+|+.. ...
T Consensus 92 ~eidaas~~------------------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp---P~~ 150 (824)
T PRK07764 92 TEIDAASHG------------------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP---PEH 150 (824)
T ss_pred EEecccccC------------------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC---CCC
Confidence 333332211 122222222222211 1 57789999999999998889999999854 457
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||++++..+ .+...+.+||.. |.|.+++.+++.++|...+... ..++++++.+|++. ..|++|.+++.
T Consensus 151 ~~fIl~tt~~~----kLl~TIrSRc~~--v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~---sgGdlR~Al~e 221 (824)
T PRK07764 151 LKFIFATTEPD----KVIGTIRSRTHH--YPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA---GGGSVRDSLSV 221 (824)
T ss_pred eEEEEEeCChh----hhhHHHHhheeE--EEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHH
Confidence 78888786554 256678999965 9999999999999999998765 56789999999998 78999999999
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
|+....
T Consensus 222 LEKLia 227 (824)
T PRK07764 222 LDQLLA 227 (824)
T ss_pred HHHHHh
Confidence 987653
No 85
>KOG0740|consensus
Probab=99.67 E-value=6.4e-15 Score=146.81 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=135.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.+..++||.||||+|||.|++++|-+. +..++.+.+++++ +++.|+ .+..++.+|.-+
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iSassLt----------sK~~Ge------~eK~vralf~vA 241 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNISASSLT----------SKYVGE------SEKLVRALFKVA 241 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhh------cceEeeccHHHhh----------hhccCh------HHHHHHHHHHHH
Confidence 456789999999999999999999998 8999999998874 666676 466666666555
Q ss_pred --CCceEEEEcCCccccccCh------------HHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEE
Q psy17062 242 --HGPCVLLIDELDYLCNKRQ------------DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLM 307 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~------------~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~ 307 (520)
..|.|+||||+|.++..+. +.|.++.-.......+|+|||+||.+..+ +.++.+||. .++.
T Consensus 242 r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~----Dea~~Rrf~-kr~y 316 (428)
T KOG0740|consen 242 RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL----DEAARRRFV-KRLY 316 (428)
T ss_pred HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH----HHHHHHHhh-ceee
Confidence 7899999999999987642 13444443334456699999999998744 445666775 4588
Q ss_pred eCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 308 FKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 308 ~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+|.|+.+.+..++...+... ..+.+..++.|++.+.+|+|.... .+|..++.
T Consensus 317 iplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~--~l~kea~~ 369 (428)
T KOG0740|consen 317 IPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT--ALCKEAAM 369 (428)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH--HHHHHhhc
Confidence 99999999999999999887 677889999999999998887655 36777764
No 86
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2e-15 Score=159.99 Aligned_cols=218 Identities=12% Similarity=0.170 Sum_probs=136.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQS-TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~-~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
+.++|+++.+.+|..++....... .+..++|+||+|+|||++++.+++.+.....+.. -.++|....+.+.....+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~--npv~~~~~~~~~~~~~s~~ 161 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS--NPTLPDFQKNDHKVTLSLE 161 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh--hhhhhcccccccccchhhh
Confidence 458999999999999998764433 3345999999999999999999998843321100 0122222222111111111
Q ss_pred HHHhcCCCChHHHHHHHHHHHc--------CCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC-
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFT--------RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL- 288 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~--------~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~- 288 (520)
.++.........+...+...-. ......||||||++.+.......+..+|.|.....+.+.+|++++....
T Consensus 162 ~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~ 241 (637)
T TIGR00602 162 SCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEG 241 (637)
T ss_pred hccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccc
Confidence 1111000011111111111110 1146789999999998876666788888744333556677777664211
Q ss_pred ---------c-hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 289 ---------P-ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 289 ---------~-~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r 350 (520)
. ...+.+.+.+++.+.+|.|+|++..++...|...+... ...++++++.|+.. ..||+|
T Consensus 242 ~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~---s~GDiR 318 (637)
T TIGR00602 242 DNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG---CSGDIR 318 (637)
T ss_pred cccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh---CCChHH
Confidence 0 11233677777766779999999999888888888753 12246788888775 999999
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
.||+.|+.++.
T Consensus 319 sAIn~LQf~~~ 329 (637)
T TIGR00602 319 SAINSLQFSSS 329 (637)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.67 E-value=2.5e-15 Score=142.63 Aligned_cols=181 Identities=9% Similarity=0.141 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
.+..+..+..++. ...+.+++|+|++|||||++++++++.+... +..+++++|..+....
T Consensus 22 ~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~~------------- 81 (226)
T TIGR03420 22 NAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQAD------------- 81 (226)
T ss_pred cHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHhH-------------
Confidence 4455666665543 4456789999999999999999999988654 5678889887653210
Q ss_pred CCChHHHHHHHHHHHcCCCCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCC-Cchhhhhhhhhcc
Q psy17062 224 DAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSR 300 (520)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR 300 (520)
...+.......+|+|||+|.+.... +..|+.+++....... .+|.+++... ... .....+.+|
T Consensus 82 -----------~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~--~iIits~~~~~~~~-~~~~~L~~r 147 (226)
T TIGR03420 82 -----------PEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG--RLLIAGRAAPAQLP-LRLPDLRTR 147 (226)
T ss_pred -----------HHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC--eEEEECCCChHHCC-cccHHHHHH
Confidence 0111111245699999999998765 7788888875432222 3444555322 111 112566777
Q ss_pred CC-cceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 301 MG-LTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 301 ~~-~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+. ...|.+++|+.+++..+++.++... ..+++++++.|+.. +.|+++.+.++++.+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH---GSRDMGSLMALLDALDR 207 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 63 2459999999999999999877644 56899999999996 89999999888877553
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.8e-15 Score=157.48 Aligned_cols=188 Identities=19% Similarity=0.189 Sum_probs=134.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..+..|.+++.. +.....+||+||+|||||++|+.+++.+...... ...+++
T Consensus 16 ~dIiGQe~v~~~L~~ai~~---~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE---NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4578998887777777653 2345679999999999999999999998643100 112334
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++..... ...+ +.+...+... ....||||||+|.|....++.|+..++.. ...+
T Consensus 93 Id~a~~~~------------------Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP---~~~~ 150 (624)
T PRK14959 93 IDGASNRG------------------IDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP---PARV 150 (624)
T ss_pred EecccccC------------------HHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc---CCCE
Confidence 43321110 1111 1122222211 56789999999999888788888888753 3567
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++... .+...+.+||.. |.|++++.+++..+|+..+... ..+++++++.|++. ..|++|.+++++
T Consensus 151 ifILaTt~~~----kll~TI~SRcq~--i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~---s~GdlR~Al~lL 221 (624)
T PRK14959 151 TFVLATTEPH----KFPVTIVSRCQH--FTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR---AAGSVRDSMSLL 221 (624)
T ss_pred EEEEecCChh----hhhHHHHhhhhc--cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 8888887644 234568899965 9999999999999999988765 45899999999998 789999999999
Q ss_pred Hhhh
Q psy17062 357 TNEK 360 (520)
Q Consensus 357 ~~a~ 360 (520)
+.+.
T Consensus 222 eqll 225 (624)
T PRK14959 222 GQVL 225 (624)
T ss_pred HHHH
Confidence 8654
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.66 E-value=5.6e-15 Score=147.87 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=138.9
Q ss_pred ccCCCCC---CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 132 LHLSRVP---ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 132 l~~~~~p---~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
+...+.| +.++|++..++.+..++.. +..++++|+|++|+|||++++.+++++..... ...++++++.+...
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~ 81 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDERG 81 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccccc
Confidence 3445555 4578999998888888753 33456999999999999999999999854321 23456666554322
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
.. .+. ..+....... ....+|+|||+|.+....++.|..+++... ....+|+++|
T Consensus 82 ~~-~~~-----------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~---~~~~lIl~~~ 140 (319)
T PRK00440 82 ID-VIR-----------------NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS---QNTRFILSCN 140 (319)
T ss_pred hH-HHH-----------------HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC---CCCeEEEEeC
Confidence 11 111 1111111111 246799999999998877778888887543 2345666666
Q ss_pred CCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 285 TMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 285 ~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
... .+...+.+|+.. ++|++++.+++..++..++... ..+++++++.++.. ..||+|.+++.++.++.
T Consensus 141 ~~~----~l~~~l~sr~~~--~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~---~~gd~r~~~~~l~~~~~ 209 (319)
T PRK00440 141 YSS----KIIDPIQSRCAV--FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV---SEGDMRKAINALQAAAA 209 (319)
T ss_pred Ccc----ccchhHHHHhhe--eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 543 234568888864 9999999999999999999765 46899999999998 78999999999987765
No 90
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.5e-15 Score=160.72 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=114.5
Q ss_pred hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHc
Q psy17062 160 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFT 239 (520)
Q Consensus 160 ~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~ 239 (520)
...++.+++++||||+|||.+++.++.. . ... ..+++... ..++.|. ....+...|.
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~--~----~~~-~~~~~~~~----------~~~~~~~------~~~~~~~~~~ 70 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE--G----AEF-LSINGPEI----------LSKYVGE------SELRLRELFE 70 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc--c----Ccc-cccCcchh----------hhhhhhH------HHHHHHHHHH
Confidence 4456778999999999999999999997 1 223 55555543 2333333 4555555665
Q ss_pred CC--CCceEEEEcCCccccccChH-----------HHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceE
Q psy17062 240 RP--HGPCVLLIDELDYLCNKRQD-----------VIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRL 306 (520)
Q Consensus 240 ~~--~~~~vLiiDEid~l~~~~~~-----------~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i 306 (520)
.+ ..++++++||++.+...... .+..+++... ... +++++.+|.....+..+ +...||.. .+
T Consensus 71 ~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~--~~~~~~~~-~~ 145 (494)
T COG0464 71 EAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAK--RRPGRFDR-EI 145 (494)
T ss_pred HHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhH--hCccccce-ee
Confidence 55 46699999999999886533 3444555455 344 78888888877666433 33466653 48
Q ss_pred EeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 307 MFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 307 ~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
.+..++.....+|+...........+.....++..+.++.|....
T Consensus 146 ~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (494)
T COG0464 146 EVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG 190 (494)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH
Confidence 889999998889988888776555578889999997777665444
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.66 E-value=3.7e-15 Score=141.65 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=116.6
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR 240 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~ 240 (520)
.....+++|+||+|||||++++++++.+... +..+++++....... ..+ +.+.+
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~~~~~~~--------------------~~~-~~~~~-- 95 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPLDKRAWF--------------------VPE-VLEGM-- 95 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEHHHHhhh--------------------hHH-HHHHh--
Confidence 3445689999999999999999999988654 455666665432110 001 11111
Q ss_pred CCCceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHH
Q psy17062 241 PHGPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQ 317 (520)
Q Consensus 241 ~~~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~ 317 (520)
....+|+|||+|.+... .+..|+++++.... .++..+|++++.....-..+.+.+.||+.. ..+.+.+|+.+++.
T Consensus 96 -~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 96 -EQLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred -hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 13468999999999764 34567777765432 233345555554322111246889999932 24999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 318 EIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 318 ~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
++++.++... ..++++++++|++. ..||+|.++.++....
T Consensus 174 ~~l~~~a~~~~~~l~~~v~~~L~~~---~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 174 QALQLRARLRGFELPEDVGRFLLKR---LDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHh---hcCCHHHHHHHHHHHH
Confidence 9999866654 67899999999998 8889999888887753
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=6e-15 Score=148.83 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=134.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH-HHHHH--H
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK-RAYSR--I 216 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~-~~~~~--i 216 (520)
.++|++..++.+..++.. +..++++|+||||||||++|+++++.+..... ...++++++.++.... ..+.. -
T Consensus 16 ~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS----PNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HhcCCHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcchhhhhcCcc
Confidence 578999988888887753 33357999999999999999999999864321 2356788876542110 00000 0
Q ss_pred HHHHhcCC----CChHHHHHHHHHHHcC----CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 217 LELLLNVD----APPEQAKAMLERHFTR----PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 217 ~~~l~g~~----~~~~~~~~~l~~~~~~----~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
+..+.+.. .........+...+.. .....+|||||+|.+....++.|..+++... ....+|.+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~---~~~~~Il~~~~~~- 166 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS---RTCRFIIATRQPS- 166 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---CCCeEEEEeCChh-
Confidence 00000000 0000111111111111 1446799999999998777778888887542 2234555555432
Q ss_pred chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
.+.+.+.+|+.. +.|.+++.+++..++...+... ..+++++++.|+.. ..||+|.+++.++.++
T Consensus 167 ---~~~~~L~sr~~~--v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~---~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 167 ---KLIPPIRSRCLP--LFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY---AGGDLRKAILTLQTAA 231 (337)
T ss_pred ---hCchhhcCCceE--EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 234568889854 9999999999999999988765 56899999999998 6899999999988765
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=5.8e-15 Score=147.51 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=135.3
Q ss_pred ccCCCCC---CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 132 LHLSRVP---ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 132 l~~~~~p---~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
+...+.| +.++|++.....+..++.. +..+..+||+||+|+|||++++++++.+ +..++++++.. ..
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~-~~ 80 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD-CR 80 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc-cc
Confidence 3345566 4689999999988888863 3344556669999999999999999987 67788888876 22
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccc-cccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYL-CNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l-~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.......+..+ .........+.||||||+|.+ ....++.|..+++.. ..++.+|+++|...
T Consensus 81 -~~~i~~~l~~~--------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~---~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 -IDFVRNRLTRF--------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY---SKNCSFIITANNKN 142 (316)
T ss_pred -HHHHHHHHHHH--------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc---CCCceEEEEcCChh
Confidence 11111111110 011111136789999999999 444567788878754 34567778887653
Q ss_pred CchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 288 LPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN--------NNCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 288 ~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~--------~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
.+.+.+.+||.. +.|+.|+.+++.+++...+.. ...++++++..+++. ..|+.|.+++.++..
T Consensus 143 ----~l~~~l~sR~~~--i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~---~~~d~r~~l~~l~~~ 213 (316)
T PHA02544 143 ----GIIEPLRSRCRV--IDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKK---NFPDFRRTINELQRY 213 (316)
T ss_pred ----hchHHHHhhceE--EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 356789999964 999999999988776643332 156788899999987 778999999988866
Q ss_pred h
Q psy17062 360 K 360 (520)
Q Consensus 360 ~ 360 (520)
+
T Consensus 214 ~ 214 (316)
T PHA02544 214 A 214 (316)
T ss_pred H
Confidence 4
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=7.5e-15 Score=155.73 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=136.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEE
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYV 199 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i 199 (520)
.+.++|++...+.|...+.. +..+..+||+||+|||||++|+.+++.+.+.... ...++
T Consensus 15 f~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred HHhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE
Confidence 45689999988888887764 3345568899999999999999999998643210 12233
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
++++... ...+.+.+.+....... ....|+||||+|.|.....+.|+..++.+ ...+
T Consensus 92 eidaas~------------------~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep---p~~~ 150 (559)
T PRK05563 92 EIDAASN------------------NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP---PAHV 150 (559)
T ss_pred Eeecccc------------------CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC---CCCe
Confidence 3332211 11112222222221111 56889999999999887777777777643 5577
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++... .+.+.+.+||.. +.|.+++.+++..+|...++.. ..+++++++.|+.. ..|++|.|++.+
T Consensus 151 ifIlatt~~~----ki~~tI~SRc~~--~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~---s~G~~R~al~~L 221 (559)
T PRK05563 151 IFILATTEPH----KIPATILSRCQR--FDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA---AEGGMRDALSIL 221 (559)
T ss_pred EEEEEeCChh----hCcHHHHhHheE--EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 7787776443 356678899964 9999999999999999988765 46899999999998 789999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.+..
T Consensus 222 dq~~~ 226 (559)
T PRK05563 222 DQAIS 226 (559)
T ss_pred HHHHH
Confidence 87643
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=8.5e-15 Score=152.86 Aligned_cols=189 Identities=18% Similarity=0.199 Sum_probs=134.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-----------------CeEEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-----------------KFVYVEM 201 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-----------------~~~~i~v 201 (520)
+.++|++.....|..++.. +..+..+||+||||||||++|+++++.+...... ...++++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HHhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 4589999988888887764 2334446999999999999999999998653210 1224444
Q ss_pred ccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 202 NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
++..... ...+.+ +...+... ..+.||||||+|.+....++.|+..++.. ...++
T Consensus 91 ~~~~~~~------------------vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep---~~~t~ 148 (504)
T PRK14963 91 DAASNNS------------------VEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP---PEHVI 148 (504)
T ss_pred cccccCC------------------HHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC---CCCEE
Confidence 4432111 111111 22211111 56789999999999776667777777643 34667
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+.+.+.+||.. +.|.+++.+++..+|...++.. ..+++++++.|+.. ..|++|.+++.|+
T Consensus 149 ~Il~t~~~~----kl~~~I~SRc~~--~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~---s~GdlR~aln~Le 219 (504)
T PRK14963 149 FILATTEPE----KMPPTILSRTQH--FRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL---ADGAMRDAESLLE 219 (504)
T ss_pred EEEEcCChh----hCChHHhcceEE--EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 777776543 345678899864 9999999999999999998765 56799999999998 8899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 220 kl~~ 223 (504)
T PRK14963 220 RLLA 223 (504)
T ss_pred HHHh
Confidence 8653
No 96
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.1e-14 Score=151.47 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=138.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++.....|..++.. +..+..+|||||+|+|||++|+.+++.+...... +..+++
T Consensus 14 deiiGqe~v~~~L~~~I~~---grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN---NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 4589999998888888753 3345557999999999999999999998543211 123444
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++.+... ...+.+.+...-... ....|+||||+|.|....++.|+..++.+ ...+.
T Consensus 91 ldaas~~g------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp---p~~t~ 149 (535)
T PRK08451 91 MDAASNRG------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP---PSYVK 149 (535)
T ss_pred eccccccC------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc---CCceE
Confidence 44322111 112222222211111 46789999999999988889999888865 44567
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+.+.+.+||.. ++|.+++.+++...+...+... ..+++++++.|+.. ..|++|.++++|+
T Consensus 150 FIL~ttd~~----kL~~tI~SRc~~--~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~---s~GdlR~alnlLd 220 (535)
T PRK08451 150 FILATTDPL----KLPATILSRTQH--FRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS---GNGSLRDTLTLLD 220 (535)
T ss_pred EEEEECChh----hCchHHHhhcee--EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHHHHHHHH
Confidence 777776532 356789999854 9999999999999999988765 56799999999998 7899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 221 qai~ 224 (535)
T PRK08451 221 QAII 224 (535)
T ss_pred HHHH
Confidence 8765
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=8.7e-15 Score=152.96 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=136.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.+..++.. +..+..+||+||+|+|||++|+.+++.+.+.... ...+++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 16 KQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 4588999998888877743 3445679999999999999999999998643210 012233
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++... .....+.+.+ ..+... ....|+||||+|.|....++.|+..|+.+ ...+
T Consensus 93 Idaas~------------------igVd~IReIi-~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP---p~~t 150 (605)
T PRK05896 93 LDAASN------------------NGVDEIRNII-DNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP---PKHV 150 (605)
T ss_pred eccccc------------------cCHHHHHHHH-HHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC---CCcE
Confidence 332211 1111122211 111111 45679999999999888888888888854 4567
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++... .+.+.+.+||.. +.|.+++.+++..+|...+... ..+++++++.++.. +.|++|.|++.+
T Consensus 151 vfIL~Tt~~~----KLl~TI~SRcq~--ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l---S~GdlR~AlnlL 221 (605)
T PRK05896 151 VFIFATTEFQ----KIPLTIISRCQR--YNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL---ADGSLRDGLSIL 221 (605)
T ss_pred EEEEECCChH----hhhHHHHhhhhh--cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHHHHHHH
Confidence 7777776532 356678999965 9999999999999999988765 46899999999998 789999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+..+.
T Consensus 222 ekL~~ 226 (605)
T PRK05896 222 DQLST 226 (605)
T ss_pred HHHHh
Confidence 98654
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.6e-15 Score=155.08 Aligned_cols=189 Identities=20% Similarity=0.195 Sum_probs=134.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.+..++.. +..+..+||+||+|+|||++|+.+++.+...... ...+++
T Consensus 16 ~divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 4589999998888777753 2334457999999999999999999998542110 011222
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++... .....+.+.+....... +...|+||||+|.|....++.|+..++.+ ...++
T Consensus 93 i~~~~~------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep---p~~~~ 151 (527)
T PRK14969 93 VDAASN------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP---PEHVK 151 (527)
T ss_pred eecccc------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC---CCCEE
Confidence 322111 11122222222221111 56789999999999888788888888753 45778
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++|+... .+...+.|||.. +.|.+++.+++...+...+... ..+++++++.|++. ..|++|.++++++
T Consensus 152 fIL~t~d~~----kil~tI~SRc~~--~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~---s~Gslr~al~lld 222 (527)
T PRK14969 152 FILATTDPQ----KIPVTVLSRCLQ--FNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA---AAGSMRDALSLLD 222 (527)
T ss_pred EEEEeCChh----hCchhHHHHHHH--HhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 888886644 234468899965 9999999999999999988654 56789999999998 7899999999998
Q ss_pred hhh
Q psy17062 358 NEK 360 (520)
Q Consensus 358 ~a~ 360 (520)
.+.
T Consensus 223 qai 225 (527)
T PRK14969 223 QAI 225 (527)
T ss_pred HHH
Confidence 654
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.5e-15 Score=158.12 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=137.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEE
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYV 199 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i 199 (520)
.+.++|++.....|..++.. +..+..+||+||+|+|||++++.+++.+.+.... ...++
T Consensus 15 f~~iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred HHHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 35689999888888877753 3345567999999999999999999998643210 11233
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
++++.+.. ..+++.+.+ ..+... ....|+||||+|.|....++.|+..|+.+ ...
T Consensus 92 eid~~s~~------------------~v~~ir~l~-~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep---p~~ 149 (576)
T PRK14965 92 EIDGASNT------------------GVDDIRELR-ENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP---PPH 149 (576)
T ss_pred eeeccCcc------------------CHHHHHHHH-HHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC---CCC
Confidence 33332211 111222211 111111 56789999999999988888999999854 457
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
+++|++|+... .+...+.+||.. +.|.+++.+++...|...++.. ..+++++++.|++. ..|++|.+++.
T Consensus 150 ~~fIl~t~~~~----kl~~tI~SRc~~--~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~---a~G~lr~al~~ 220 (576)
T PRK14965 150 VKFIFATTEPH----KVPITILSRCQR--FDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK---GDGSMRDSLST 220 (576)
T ss_pred eEEEEEeCChh----hhhHHHHHhhhh--hhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCCHHHHHHH
Confidence 78888887553 356678999965 9999999999999999988765 56899999999998 78999999999
Q ss_pred HHhhh
Q psy17062 356 YTNEK 360 (520)
Q Consensus 356 l~~a~ 360 (520)
++.+.
T Consensus 221 Ldqli 225 (576)
T PRK14965 221 LDQVL 225 (576)
T ss_pred HHHHH
Confidence 87653
No 100
>KOG0651|consensus
Probab=99.64 E-value=5e-16 Score=145.23 Aligned_cols=197 Identities=14% Similarity=0.239 Sum_probs=143.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.+-|--.++.++.+.+.-.+. -.+|.+++||||||+|||.++++++..+ ++.++.+.++.+
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~l-- 202 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSAL-- 202 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhhh--
Confidence 44566777777777776654332 2467889999999999999999999999 899998888775
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KP 273 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~ 273 (520)
.+++.|+ ....+++.|..+ ..|||||+||||...... +..|.++++.+. ..
T Consensus 203 --------v~kyiGE------saRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~ 268 (388)
T KOG0651|consen 203 --------VDKYIGE------SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT 268 (388)
T ss_pred --------hhhhccc------HHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh
Confidence 4666677 667788888877 789999999999987642 345777776552 34
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
..++.+|+++|+++.++..|.+. .|+. +.+..|.|+...+..|++-+.+....+..-.-+.+.+.++++.|..++
T Consensus 269 l~rVk~ImatNrpdtLdpaLlRp--GRld-rk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~r-- 343 (388)
T KOG0651|consen 269 LHRVKTIMATNRPDTLDPALLRP--GRLD-RKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLR-- 343 (388)
T ss_pred cccccEEEecCCccccchhhcCC--cccc-ceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHh--
Confidence 57899999999999887655433 4554 238899999999999888776655222222344555555567776644
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
+.|+++..
T Consensus 344 n~~tEag~ 351 (388)
T KOG0651|consen 344 NVCTEAGM 351 (388)
T ss_pred hhcccccc
Confidence 57777765
No 101
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.64 E-value=6.2e-15 Score=140.44 Aligned_cols=235 Identities=19% Similarity=0.245 Sum_probs=161.3
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC---
Q psy17062 133 HLSRVPESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE--- 208 (520)
Q Consensus 133 ~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~--- 208 (520)
...++.+-++|+.+..+..--.+.-...+ ..+..+||.||||||||+||-.++++|.. +.+|+.++++++.+
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~----dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE----DVPFVAISGSEIYSLEV 108 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC----CCCceeeccceeeeecc
Confidence 34567788999987766643333322222 35678999999999999999999999944 68999999988754
Q ss_pred -hHHHHHHHHHHHhcCCCC------------------------h------------------------------------
Q psy17062 209 -PKRAYSRILELLLNVDAP------------------------P------------------------------------ 227 (520)
Q Consensus 209 -~~~~~~~i~~~l~g~~~~------------------------~------------------------------------ 227 (520)
..+++.+.+++-.|-... +
T Consensus 109 kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~ 188 (450)
T COG1224 109 KKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVE 188 (450)
T ss_pred cHHHHHHHHHHHhhceEeeeeeEEEEEEEEEEEEeeccCCCCCccccccceEEEEEecccceEeecCHHHHHHHHHhCcc
Confidence 445555555544331100 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17062 228 -------------------------------------------------------------------------------- 227 (520)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (520)
T Consensus 189 ~GDVI~Id~etG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~ 268 (450)
T COG1224 189 EGDVIYIDAETGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEIT 268 (450)
T ss_pred cCCEEEEEccccEEEEeecccccccccccccceEEEECCCCceeeeEEEEEEEEehhhhhhhccccchHhhhcCCcccCC
Confidence
Q ss_pred ----HHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC-------CCc-hhh
Q psy17062 228 ----EQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM-------DLP-ERT 292 (520)
Q Consensus 228 ----~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~-------~~~-~~~ 292 (520)
.+..+...++..+. --|.||||||+|.|+-.....|...|+. .-+++ +|.+||+- +.. ..-
T Consensus 269 ~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEs---e~aPI-ii~AtNRG~~kiRGTd~~sPhG 344 (450)
T COG1224 269 DEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALES---ELAPI-IILATNRGMTKIRGTDIESPHG 344 (450)
T ss_pred HHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhc---ccCcE-EEEEcCCceeeecccCCcCCCC
Confidence 01222233333333 4588999999999998888888888872 23444 66667762 211 123
Q ss_pred hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCceecc
Q psy17062 293 LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDWVS 371 (520)
Q Consensus 293 l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~~a 371 (520)
++..+..|+-+ |.-.||+.+++++||+.++... ..++++++++++.. +....+|.+++++.-+.. ++
T Consensus 345 IP~DlLDRllI--I~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~i--g~etSLRYa~qLL~pa~i--------iA 412 (450)
T COG1224 345 IPLDLLDRLLI--ISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDI--GEETSLRYAVQLLTPASI--------IA 412 (450)
T ss_pred CCHhhhhheeE--EecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhh--chhhhHHHHHHhccHHHH--------HH
Confidence 45667788754 9999999999999999999876 78899999999997 566789999999987765 34
Q ss_pred cccchhhhhccccccc
Q psy17062 372 SSSDEEEKEENHVIGK 387 (520)
Q Consensus 372 ~~~~~~~~~~~~v~~a 387 (520)
...+...+..++|..+
T Consensus 413 ~~rg~~~V~~~dVe~a 428 (450)
T COG1224 413 KRRGSKRVEVEDVERA 428 (450)
T ss_pred HHhCCCeeehhHHHHH
Confidence 3444445555554443
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9e-15 Score=155.82 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=135.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---------------CeEEEEEcc
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD---------------KFVYVEMNA 203 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~---------------~~~~i~v~~ 203 (520)
+.++|++..++.|...+.. +..+..+||+||+|+|||++|+.+|+.+.+.... ...++++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 3588999998888887753 3445567999999999999999999998553210 011111211
Q ss_pred ccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEE
Q psy17062 204 LSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIIL 280 (520)
Q Consensus 204 ~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI 280 (520)
..- .....+.+ +...+... +...|+||||+|.|....++.|+..|+.+ ...+++|
T Consensus 95 asn------------------~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP---P~~tifI 152 (725)
T PRK07133 95 ASN------------------NGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP---PKHVIFI 152 (725)
T ss_pred ccc------------------CCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC---CCceEEE
Confidence 100 11112222 22222222 57789999999999988888888888854 4577788
Q ss_pred EEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 281 ~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
++++..+ .+.+.+.+||.. +.|.+++.+++..+|...+... ..+++++++.++.. +.|++|.|+.+++..
T Consensus 153 LaTte~~----KLl~TI~SRcq~--ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l---S~GslR~AlslLekl 223 (725)
T PRK07133 153 LATTEVH----KIPLTILSRVQR--FNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL---SSGSLRDALSIAEQV 223 (725)
T ss_pred EEcCChh----hhhHHHHhhcee--EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHH
Confidence 8776543 356678999964 9999999999999999988765 56788999999998 789999999999886
Q ss_pred hc
Q psy17062 360 KK 361 (520)
Q Consensus 360 ~~ 361 (520)
+.
T Consensus 224 ~~ 225 (725)
T PRK07133 224 SI 225 (725)
T ss_pred HH
Confidence 54
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.9e-14 Score=152.62 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=136.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCC--eEEEEEccccCCChHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDK--FVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~--~~~i~v~~~~~~~~~~~~~~i 216 (520)
+.++|++..++.|..++.. +..+..+||+||+|+|||++|+.+++.+.+..... .+.+ -.|..+.+ +..|
T Consensus 24 ~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~-~~cg~c~~----C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI-DLCGVGEH----CQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc-ccCcccHH----HHHH
Confidence 4689999999988887763 34566799999999999999999999985432100 0000 01111110 0001
Q ss_pred HHHHh--------cCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 217 LELLL--------NVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 217 ~~~l~--------g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
..... ......+++.+.+...-... ....|+||||+|.|.....+.|+..|+.+ ...+++|++++..
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP---p~~~~fIl~tte~ 172 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP---PPHVKFIFATTEI 172 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC---CCCeEEEEEeCCh
Confidence 00000 00011222322222221111 56789999999999988888888888754 4567777777654
Q ss_pred CCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 287 DLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 287 ~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+. +...+.+||.. +.|.+++.+++..+|...++.. ..+++++++.|+.. ..|++|.+++.++.+.
T Consensus 173 ~k----ll~tI~SRcq~--~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~---a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 173 RK----VPVTVLSRCQR--FDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA---AEGSVRDGLSLLDQAI 238 (598)
T ss_pred hh----hhHHHHhheeE--EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 42 45568999964 9999999999999999998765 57899999999998 7899999999987763
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.62 E-value=1.3e-14 Score=137.68 Aligned_cols=163 Identities=12% Similarity=0.130 Sum_probs=119.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
....+++|+|++|||||++++++++.+... +..++++++..... . +...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~----------~------------------~~~~ 88 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL----------A------------------FDFD 88 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH----------H------------------Hhhc
Confidence 345689999999999999999999987654 67788888865421 0 0011
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHH
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il 320 (520)
....+|+|||+|.+....+..|+.+++.... ....++|.+++... ....+...+.+||.. ..+.+++|+.+++..++
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~-~~~~~vl~~~~~~~-~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRA-HGQGALLVAGPAAP-LALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHH-cCCcEEEEeCCCCH-HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 2567999999999988888889998875532 22333444444322 121245677788732 46999999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
...+... ..++++++++|++. +.||++.+..+++...
T Consensus 167 ~~~~~~~~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 167 KAAAAERGLQLADEVPDYLLTH---FRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHH
Confidence 8877654 77899999999996 8999999888877643
No 105
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.62 E-value=5.1e-15 Score=163.70 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=137.4
Q ss_pred chHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 123 TPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 123 ~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~--~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
..+..+++.|.. .++|.++..+++.+++...... ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 309 ~~~~~~~~~l~~-----~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~ 377 (775)
T TIGR00763 309 LDLKRAKEILDE-----DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVR 377 (775)
T ss_pred hhHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEE
Confidence 345556665544 3579999999999987754322 244579999999999999999999999 788888
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-CCceEEEEcCCccccccCh----HHHHHHHHhcC----
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKRQ----DVIYNILEYLN---- 271 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~~----~~L~~ll~~~~---- 271 (520)
+++....+...+... ...+.|.. ...+...|..+ ....||||||||.+....+ +.|+++|+...
T Consensus 378 i~~~~~~~~~~i~g~-~~~~~g~~------~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f 450 (775)
T TIGR00763 378 FSLGGVRDEAEIRGH-RRTYVGAM------PGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAF 450 (775)
T ss_pred EeCCCcccHHHHcCC-CCceeCCC------CchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCcc
Confidence 887665442222110 01122221 11222333333 3344899999999987533 57777776310
Q ss_pred --------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHh-------CC----CCCCH
Q psy17062 272 --------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLK-------NN----NCFHP 332 (520)
Q Consensus 272 --------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~-------~~----~~~~~ 332 (520)
...+++++|+|+|..+ .+++++.+||. .|.|++|+.+++.+|++.++. .+ ..+++
T Consensus 451 ~d~~~~~~~d~s~v~~I~TtN~~~----~i~~~L~~R~~--vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~ 524 (775)
T TIGR00763 451 SDHYLDVPFDLSKVIFIATANSID----TIPRPLLDRME--VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITD 524 (775)
T ss_pred ccccCCceeccCCEEEEEecCCch----hCCHHHhCCee--EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECH
Confidence 1125789999999865 35678889995 499999999999999987762 11 46899
Q ss_pred HHHHHHHHHcCCCCC
Q psy17062 333 DAVQLVARLEPPTSR 347 (520)
Q Consensus 333 ~~l~~la~~~~~~~G 347 (520)
+++.+|++.+....|
T Consensus 525 ~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 525 EALLLLIKYYTREAG 539 (775)
T ss_pred HHHHHHHHhcChhcC
Confidence 999999997655444
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=99.62 E-value=1.8e-14 Score=136.73 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.++++|+|++|+|||+|++++++++... +..++|+++.++... . ..+.+.+ ..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~~--------------------~-~~~~~~~---~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLDR--------------------G-PELLDNL---EQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHhh--------------------h-HHHHHhh---hh
Confidence 4679999999999999999999988654 567788887654210 0 1111112 24
Q ss_pred ceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il 320 (520)
..+|+|||++.+.... +..|+++++.... .+..++|+++..+.... ...+.+.|||.. ..+.+.+|+.+++..++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-~g~~ilits~~~p~~l~-~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRD-SGRRLLLAASKSPRELP-IKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHcC-ccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 5699999999887543 4678888876532 23444554443333333 236789999832 24789999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.++... ..++++++++|++. ..+|+|.+...+....
T Consensus 176 ~~ka~~~~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 176 QLRASRRGLHLTDEVGHFILTR---GTRSMSALFDLLERLD 213 (234)
T ss_pred HHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 9766554 67899999999998 7888888777776553
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.61 E-value=3.1e-14 Score=133.63 Aligned_cols=205 Identities=14% Similarity=0.192 Sum_probs=128.0
Q ss_pred CCCCCCCCC-chH-HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHH
Q psy17062 134 LSRVPESLP-CRE-AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKR 211 (520)
Q Consensus 134 ~~~~p~~l~-gr~-~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~ 211 (520)
..+..++++ |.. +..-.....+... .+...+.++|||++|+|||+|++++++++..... +..++|+++.++.
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~-~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~---- 76 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN-PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFI---- 76 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS-TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHH----
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc-CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHH----
Confidence 455566664 432 2222233333222 2223457999999999999999999999876543 6788899876642
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 212 AYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 212 ~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
..+...+... ....+...+ ....+|+||++|.+.... +..|+.+++........ +||.....+..+
T Consensus 77 --~~~~~~~~~~------~~~~~~~~~---~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~-li~ts~~~P~~l 144 (219)
T PF00308_consen 77 --REFADALRDG------EIEEFKDRL---RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQ-LILTSDRPPSEL 144 (219)
T ss_dssp --HHHHHHHHTT------SHHHHHHHH---CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSE-EEEEESS-TTTT
T ss_pred --HHHHHHHHcc------cchhhhhhh---hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCe-EEEEeCCCCccc
Confidence 2222222221 112222233 478899999999998764 77888888876433333 333333333433
Q ss_pred hhhhhhhhhccCCc-ceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 290 ERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 290 ~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
. .+.+++.||+.. -.+.+.+|+.+++.+|++.++... ..++++++++|++. ..+++|....++.+..
T Consensus 145 ~-~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~---~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 145 S-GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARR---FRRDVRELEGALNRLD 213 (219)
T ss_dssp T-TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHH---TTSSHHHHHHHHHHHH
T ss_pred c-ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh---hcCCHHHHHHHHHHHH
Confidence 3 256789999843 269999999999999999988765 67899999999998 7778888777776543
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=2.8e-15 Score=129.46 Aligned_cols=116 Identities=28% Similarity=0.524 Sum_probs=86.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CC-
Q psy17062 167 MYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HG- 243 (520)
Q Consensus 167 lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~- 243 (520)
+||+||||||||++++.+++.+ +.+++++++..+.+. ........+...|..+ ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccc----------------ccccccccccccccccccccc
Confidence 6899999999999999999999 899999999876321 1222444555555554 33
Q ss_pred ceEEEEcCCccccccC-----------hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhh-ccCCcceEEeC
Q psy17062 244 PCVLLIDELDYLCNKR-----------QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVS-SRMGLTRLMFK 309 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~-sR~~~~~i~~~ 309 (520)
++||+|||+|.+.... .+.|+..++.......++++|+++|..+. +.+.+. +||.. .|.|+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~----i~~~l~~~rf~~-~i~~~ 131 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK----IDPALLRSRFDR-RIEFP 131 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG----SCHHHHSTTSEE-EEEE-
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhh----CCHhHHhCCCcE-EEEcC
Confidence 8999999999999887 45677777766555578999999999653 455666 88864 36665
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=4.1e-14 Score=143.81 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=135.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.+...+.. +..+..+||+||+|+|||++++.+++.+...... ...+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 4578999999998888753 3445678999999999999999999998643110 123344
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
++...... .....+.+....... ....|+||||+|.+.....+.|+..++.. ...++
T Consensus 91 ~~~~~~~~------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~---~~~~~ 149 (355)
T TIGR02397 91 IDAASNNG------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP---PEHVV 149 (355)
T ss_pred eeccccCC------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC---cccee
Confidence 44432111 111111111111111 46679999999999876677777777643 45677
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++..+ .+.+.+.+|+.. +.|++++.+++.+++..+++.. ..+++++++.++.. ..|+++.+++.++
T Consensus 150 lIl~~~~~~----~l~~~l~sr~~~--~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~---~~g~~~~a~~~le 220 (355)
T TIGR02397 150 FILATTEPH----KIPATILSRCQR--FDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA---ADGSLRDALSLLD 220 (355)
T ss_pred EEEEeCCHH----HHHHHHHhheeE--EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCChHHHHHHHH
Confidence 777776543 345678899854 9999999999999999988765 46899999999998 7889999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 221 kl~~ 224 (355)
T TIGR02397 221 QLIS 224 (355)
T ss_pred HHHh
Confidence 7765
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=5.8e-14 Score=145.16 Aligned_cols=177 Identities=15% Similarity=0.226 Sum_probs=121.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.++++|||++|+|||+|++++++++..... +..++|+++.++ ...+...+... ....+...+. ..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f------~~~~~~~~~~~------~~~~f~~~~~--~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKF------LNDLVDSMKEG------KLNEFREKYR--KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHH------HHHHHHHHhcc------cHHHHHHHHH--hc
Confidence 457999999999999999999999876433 467888887553 23333333211 1111222221 25
Q ss_pred ceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcc-eEEeCCCCHHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLT-RLMFKPYDHHQLQEIV 320 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~-~i~~~~~~~~~~~~Il 320 (520)
+.+|+|||++.+.... +..|+.+++...... ..+||++.+.+..+. .+.+++.|||... .+.|.+|+.+.+.+||
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~-~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLS-EFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHH-HHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 7899999999986543 556777776554222 333443223333333 2567899999532 5899999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+..++.. ..++++.+++|+.. ..|++|.+...+....
T Consensus 273 ~~~~~~~~~~l~~ev~~~Ia~~---~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 273 RKMLEIEHGELPEEVLNFVAEN---VDDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHhcCCCCCHHHHHHHHhc---cccCHHHHHHHHHHHH
Confidence 9998754 67899999999998 7788888777776553
No 111
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=7.1e-15 Score=159.71 Aligned_cols=229 Identities=12% Similarity=0.193 Sum_probs=154.6
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhh-----cCCCCeEEEEc
Q psy17062 97 TPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISG 171 (520)
Q Consensus 97 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~-----~~~~~~lLl~G 171 (520)
+.......++....+|.... .......+....+.+ -..++|++..++.|...+..... .++.+++||+|
T Consensus 422 ~~~~i~~v~~~~tgip~~~~-~~~~~~~l~~l~~~L-----~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~G 495 (758)
T PRK11034 422 NVADIESVVARIARIPEKSV-SQSDRDTLKNLGDRL-----KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAG 495 (758)
T ss_pred ChhhHHHHHHHHhCCChhhh-hhhHHHHHHHHHHHh-----cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEEC
Confidence 33344444445555555431 111222333343333 34578999999999999987543 23446799999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceEEEE
Q psy17062 172 VPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRPHGPCVLLI 249 (520)
Q Consensus 172 ~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~vLii 249 (520)
|+|||||++|+.+|+.+ +.+++.++|.++..... ...+.|.+..+... ...+...+.. ...+||||
T Consensus 496 P~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~-----~~~LiG~~~gyvg~~~~g~L~~~v~~-~p~sVlll 563 (758)
T PRK11034 496 PTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHT-----VSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLL 563 (758)
T ss_pred CCCCCHHHHHHHHHHHh------CCCcEEeechhhccccc-----HHHHcCCCCCcccccccchHHHHHHh-CCCcEEEe
Confidence 99999999999999998 77899999988754332 35555643222111 1122222221 35789999
Q ss_pred cCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCC---------CC------------chhhhhhhhhcc
Q psy17062 250 DELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTM---------DL------------PERTLKGKVSSR 300 (520)
Q Consensus 250 DEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~---------~~------------~~~~l~~~l~sR 300 (520)
||+|.+.+..++.|+++|+... ....++++|++||.- .. ....+.+.|.+|
T Consensus 564 DEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~R 643 (758)
T PRK11034 564 DEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR 643 (758)
T ss_pred ccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHcc
Confidence 9999999999999999998431 112477899999832 00 112356888999
Q ss_pred CCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHcCC
Q psy17062 301 MGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLEPP 344 (520)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~~~ 344 (520)
+. .+|.|++++.+++.+|+...+..+ ..+++.++++|+.....
T Consensus 644 id-~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~ 696 (758)
T PRK11034 644 LD-NIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYD 696 (758)
T ss_pred CC-EEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCC
Confidence 96 359999999999999998777643 67899999999987543
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=5.6e-14 Score=145.46 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=136.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-------------------CeEE
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-------------------KFVY 198 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-------------------~~~~ 198 (520)
.+.++|++..+..+...+.. +..+..+||+||+|+|||++|+.+++.+...... ...+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 35689999998888877753 3345668999999999999999999998643110 1123
Q ss_pred EEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHc---CCCCceEEEEcCCccccccChHHHHHHHHhcCCCCC
Q psy17062 199 VEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFT---RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKS 275 (520)
Q Consensus 199 i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~---~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~ 275 (520)
+++++..... ...+... ...+. ......|+||||+|.+....++.|+..++.. ..
T Consensus 93 ~~i~g~~~~g------------------id~ir~i-~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep---~~ 150 (451)
T PRK06305 93 LEIDGASHRG------------------IEDIRQI-NETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP---PQ 150 (451)
T ss_pred EEeeccccCC------------------HHHHHHH-HHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC---CC
Confidence 3333322111 1111111 11111 1156789999999999887777888887743 45
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
.+++|++++... .+.+.+.+||.. +.|++++.+++..+|...++.. ..+++++++.|+.. ..||+|.+++
T Consensus 151 ~~~~Il~t~~~~----kl~~tI~sRc~~--v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~---s~gdlr~a~~ 221 (451)
T PRK06305 151 HVKFFLATTEIH----KIPGTILSRCQK--MHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA---AQGSLRDAES 221 (451)
T ss_pred CceEEEEeCChH----hcchHHHHhceE--EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHH
Confidence 677777776542 356788999965 9999999999999999988765 46899999999998 7899999999
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
.++....
T Consensus 222 ~Lekl~~ 228 (451)
T PRK06305 222 LYDYVVG 228 (451)
T ss_pred HHHHHHH
Confidence 9987653
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=5.4e-14 Score=148.65 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=136.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..+..|..++.. +..+..+||+||+|+|||++|+.+++.+...... ...++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 4589999999988888864 3345569999999999999999999998643110 112233
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++... .....+.+......... ....|+||||+|.|....++.|+..++. ....++
T Consensus 93 idgas~------------------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe---pp~~~v 151 (563)
T PRK06647 93 IDGASN------------------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE---PPPYIV 151 (563)
T ss_pred ecCccc------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc---CCCCEE
Confidence 322211 11112222222111111 5778999999999988777777777764 356778
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+.+.+.+||.. +.|.+++.+++.++|...+... ..++++++++|++. ..|++|.+++.++
T Consensus 152 fI~~tte~~----kL~~tI~SRc~~--~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~---s~GdlR~alslLd 222 (563)
T PRK06647 152 FIFATTEVH----KLPATIKSRCQH--FNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK---STGSVRDAYTLFD 222 (563)
T ss_pred EEEecCChH----HhHHHHHHhceE--EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 888775532 356789999965 9999999999999999988655 56889999999998 7899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 223 klis 226 (563)
T PRK06647 223 QVVS 226 (563)
T ss_pred HHHh
Confidence 7653
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.1e-14 Score=152.13 Aligned_cols=200 Identities=17% Similarity=0.166 Sum_probs=135.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++.....|..++.. +.....+||+||+|+|||++|+.+++.+.+....+ ...-.|..+ ..+..+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~--~~~~~Cg~C----~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK--PTPEPCGKC----ELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC--CCCCCCccc----HHHHHHhc
Confidence 4688999998888888764 23456799999999999999999999985531100 000112211 11111110
Q ss_pred HHh-------c-CCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 219 LLL-------N-VDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 219 ~l~-------g-~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
... . .......+.+.+....... ....|+||||+|.|....++.|+..|+.. ...+++|++++...
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP---p~~tvfIL~t~~~~- 162 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP---PPRVVFVLATTDPQ- 162 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC---CcCeEEEEEeCChh-
Confidence 000 0 0011222333332221111 56689999999999888888888888843 45678888887543
Q ss_pred chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
.+.+.+.+||.. +.|.+++.+++...+...+... ..++++++..|+.. ..|++|.|+++++..
T Consensus 163 ---~llpTIrSRc~~--~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~---s~G~lr~A~~lLekl 226 (620)
T PRK14948 163 ---RVLPTIISRCQR--FDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR---SQGGLRDAESLLDQL 226 (620)
T ss_pred ---hhhHHHHhheeE--EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHH
Confidence 256678999965 9999999999999999888764 56889999999998 789999998888754
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.3e-14 Score=145.92 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=132.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCC------------------eEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDK------------------FVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~------------------~~~i~ 200 (520)
..++|++..+..+...+.. +..+..+||+||+|+|||++|+.+++.+.+..... ..+++
T Consensus 16 ~diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred HHccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3578999988888777754 23344578999999999999999999985321100 11222
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
+++... .....+ +.+...+... ..+.|+||||+|.|....++.|+..++.+ ...+
T Consensus 93 idaas~------------------~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep---p~~~ 150 (486)
T PRK14953 93 IDAASN------------------RGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP---PPRT 150 (486)
T ss_pred EeCccC------------------CCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC---CCCe
Confidence 222110 011111 1222222222 56789999999999877777787777744 3456
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++..+ .+...+.+||.. +.|.+++.+++..+|..+++.. ..+++++++.|+.. +.|++|.+++.+
T Consensus 151 v~Il~tt~~~----kl~~tI~SRc~~--i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~---s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYD----KIPPTILSRCQR--FIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA---SEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHH----HHHHHHHHhceE--EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 6666665433 245678899964 9999999999999999998875 57889999999998 779999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.+..
T Consensus 222 dkl~~ 226 (486)
T PRK14953 222 DQAST 226 (486)
T ss_pred HHHHH
Confidence 88754
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=9e-14 Score=128.58 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=140.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.|+|-+.+.+.|.+.....+.+.+.+++||+|++|||||+++++++.++... +..+|+|....+.+-..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l~~------- 96 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDLPE------- 96 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccHHH-------
Confidence 46899999999999999999999999999999999999999999999999877 89999999887754221
Q ss_pred HHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc-ChHHHHHHHHhc-CCCCCcEEEEEEEcCCCCchhhhh--
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK-RQDVIYNILEYL-NKPKSRLIILCIANTMDLPERTLK-- 294 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~-~~~~L~~ll~~~-~~~~~~v~vI~~tn~~~~~~~~l~-- 294 (520)
+...+......-|||+|++-.=..+ .-..|..+|+.. .....++++.+|+|+..+....+.
T Consensus 97 ---------------l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 97 ---------------LLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred ---------------HHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 2222333346789999997532221 345688888865 445678999999998544322111
Q ss_pred -----------------hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCC--CCCCHHHHHH
Q psy17062 295 -----------------GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPP--TSRSEIFCAN 354 (520)
Q Consensus 295 -----------------~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~--~~G~~r~al~ 354 (520)
-.+..||+.. |.|.+++.++-.+|++.+++.. ..++++.+..-|-..+. ..-+.|.|-.
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL~-l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~Q 240 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGLW-LSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQ 240 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCcE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 1367899876 9999999999999999999865 44554444333333222 2235666666
Q ss_pred HHHhh
Q psy17062 355 HYTNE 359 (520)
Q Consensus 355 ~l~~a 359 (520)
.+...
T Consensus 241 F~~~l 245 (249)
T PF05673_consen 241 FIDDL 245 (249)
T ss_pred HHHHH
Confidence 65543
No 117
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=2.4e-14 Score=149.74 Aligned_cols=174 Identities=15% Similarity=0.222 Sum_probs=122.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGP 244 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~ 244 (520)
+.++|||++|+|||+|++++++.+..... +..++|+++.++.+ .+...+... ..+.+.+.+ ...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaeef~~------el~~al~~~------~~~~f~~~y---~~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEEFTN------EFINSIRDG------KGDSFRRRY---REM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHH------HHHHHHHhc------cHHHHHHHh---hcC
Confidence 45999999999999999999999865322 56788888866432 122222111 112223333 467
Q ss_pred eEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCC-CCchhhhhhhhhccCCcc-eEEeCCCCHHHHHHHH
Q psy17062 245 CVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTM-DLPERTLKGKVSSRMGLT-RLMFKPYDHHQLQEIV 320 (520)
Q Consensus 245 ~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~-~~~~~~l~~~l~sR~~~~-~i~~~~~~~~~~~~Il 320 (520)
.+||||||+.+.... +..|+++++........ +|.+++.. ..+. .+.++|.+||... .+.+.+|+.+.+.+||
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~--IIITSd~~P~eL~-~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ--IVLSSDRPPKQLV-TLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCC--EEEecCCChHhhh-hccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 899999999997753 57788888876533333 33355543 2222 3577899999543 5899999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.++... ..++++++++|+.. ..+++|.+..++.+..
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r---~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASR---ISRNIRELEGALIRVT 493 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHH
Confidence 9998765 77899999999998 6777777766666543
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7e-14 Score=148.54 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=133.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeE-E---EEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFV-Y---VEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~-~---i~v~~~~~~~~~~~~~ 214 (520)
+.++|++..+..|...+.. +..+..+||+||+|||||++|+.+++.+......+-+ + ..-.|..+.+-..+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~---~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM---DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 4689999888887776643 3445569999999999999999999999552100000 0 0012222211000000
Q ss_pred HH---HHHHhc-CCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 215 RI---LELLLN-VDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 215 ~i---~~~l~g-~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
.- +..+.| .....+++.+.+....... ....|+||||+|.|....++.|+..|+.+ ...+++|++++...
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP---p~~tv~IL~t~~~~- 168 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP---PPHAIFIFATTELH- 168 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC---CCCeEEEEEeCChh-
Confidence 00 000001 0011222222222221111 56779999999999888888888888854 34566777775432
Q ss_pred chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
.+...+.+||.. +.|.+++.+++..+|...+... ..+++++++.|+.. ..|+++.+++.++...
T Consensus 169 ---kLl~TI~SRc~~--vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~---s~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 169 ---KIPATIASRCQR--FNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK---AQGSMRDAQSILDQVI 233 (620)
T ss_pred ---hhhHHHHhhceE--EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 356678999965 9999999999999999888765 46899999999998 7899999998877543
No 119
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=1.9e-14 Score=150.24 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=123.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.++++||||+|+|||+|++++++++..... +..++++++.++.+ .+...+... ....+...+ ..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~------~~~~~~~~~------~~~~~~~~~---~~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTN------DFVNALRNN------TMEEFKEKY---RS 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHH------HHHHHHHcC------cHHHHHHHH---hc
Confidence 467999999999999999999999876532 56788888876531 122222111 112222222 36
Q ss_pred ceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcC-CCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANT-MDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEI 319 (520)
Q Consensus 244 ~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~-~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~I 319 (520)
..+|+|||+|.+... .++.|+.+++...... ..++| +++. +..+.. +.+++.+||.. ..+.|.+|+.+++.+|
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iii-ts~~~p~~l~~-l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVL-TSDRPPKELPG-LEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEE-ECCCCHHHHHH-HHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 789999999999765 3567888877654333 23344 4443 222332 56789999953 3599999999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 320 VQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 320 l~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
|+.++... ..++++++++|+.. ..|++|.+...+.....
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~---~~~~~R~l~~~l~~l~~ 328 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKN---ITSNVRELEGALNRLIA 328 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcC---cCCCHHHHHHHHHHHHH
Confidence 99999864 57899999999998 88899887777766543
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.2e-14 Score=143.67 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=133.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEE---EEEccccCCChHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVY---VEMNALSIPEPKRAYS 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~---i~v~~~~~~~~~~~~~ 214 (520)
+.++|++...+.|..++.. +..+..+||+||+|+|||++|+.+++.+...... +..+ ..-.|..+.+-..+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 4689999888887777753 2344559999999999999999999999542100 0000 0011222111000000
Q ss_pred HH---HHHHhc-CCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 215 RI---LELLLN-VDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 215 ~i---~~~l~g-~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
.. +..+.+ .....+.+.+.....-... ....|+||||+|.+....++.|+..++.+ ....++|++++...
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep---~~~t~~Il~t~~~~- 168 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP---PPHAIFIFATTELH- 168 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC---CCCeEEEEEeCChH-
Confidence 00 000001 0011122222222221111 46679999999999887777888777743 34566666665432
Q ss_pred chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+.+.+|+.. +.|.+++.+++..++...++.. ..+++++++.|+.. ..|+++.+++.++.+..
T Consensus 169 ---kl~~tl~sR~~~--v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~---s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 169 ---KIPATIASRCQR--FNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK---AQGSMRDAQSILDQVIA 234 (397)
T ss_pred ---HhHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 356678899965 9999999999999999988765 56999999999998 78999999999887644
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=3.6e-14 Score=146.82 Aligned_cols=178 Identities=14% Similarity=0.256 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.+.++|||++|+|||+|++++++.+..... +..++|+++.++ +..+...+... .+.+.........
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f------~~~~~~~l~~~-------~~~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEF------ARKAVDILQKT-------HKEIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHH------HHHHHHHHHHh-------hhHHHHHHHHhcc
Confidence 356999999999999999999998865432 577888887654 23333333210 0112222222246
Q ss_pred ceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 244 ~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il 320 (520)
..+|+|||++.+... .++.|+.+++....... .+|.+++.....-..+..++.+||.. -.+.+.+|+.+++.+||
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 789999999999754 56788888887643333 34555554332222467899999953 26889999999999999
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNNN---CFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~~---~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.+++... .++++++++|+.. ..||+|.+..+|.++.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~---~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNY---YSDDVRKIKGSVSRLN 324 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHc---cCCCHHHHHHHHHHHH
Confidence 99998642 6999999999998 8899999999998764
No 122
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4e-14 Score=146.56 Aligned_cols=215 Identities=16% Similarity=0.192 Sum_probs=156.8
Q ss_pred CchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 122 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 122 ~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~--~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
.-.+..+++.|..+. +|-++--++|.++|.-.... -.+..++|+||||||||+|++.+|+.+ +..|+
T Consensus 311 ~~Dl~~a~~iLd~dH-----YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al------~Rkfv 379 (782)
T COG0466 311 KLDLKKAEKILDKDH-----YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL------GRKFV 379 (782)
T ss_pred hhhHHHHHHHhcccc-----cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh------CCCEE
Confidence 456677888777654 59999999999998875433 345789999999999999999999999 89999
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHH-HHHHHHHHHcCC-CCceEEEEcCCccccccC----hHHHHHHHHhc---
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQ-AKAMLERHFTRP-HGPCVLLIDELDYLCNKR----QDVIYNILEYL--- 270 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~-~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~----~~~L~~ll~~~--- 270 (520)
.+......+ -+.+.|+.-++-. .-..+-+.+..+ ...-|++|||||.|..+- .++|+.+||--
T Consensus 380 R~sLGGvrD--------EAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~ 451 (782)
T COG0466 380 RISLGGVRD--------EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNN 451 (782)
T ss_pred EEecCcccc--------HHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcC
Confidence 998888776 3445555433211 112222333333 456799999999998763 45777777521
Q ss_pred ---------CCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----------CCC
Q psy17062 271 ---------NKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----------NCF 330 (520)
Q Consensus 271 ---------~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----------~~~ 330 (520)
...-+.|.||+|+|..+. ++.++..|+.+ |.+..|+.++-.+|.+.+|=.. ..+
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANsl~t----IP~PLlDRMEi--I~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i 525 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANSLDT----IPAPLLDRMEV--IRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTI 525 (782)
T ss_pred chhhccccCccchhheEEEeecCcccc----CChHHhcceee--eeecCCChHHHHHHHHHhcchHHHHHcCCCccceee
Confidence 123468999999999873 45578888865 9999999999999999876321 678
Q ss_pred CHHHHHHHHHHcCCCCC--C-HHHHHHHHHhhhc
Q psy17062 331 HPDAVQLVARLEPPTSR--S-EIFCANHYTNEKK 361 (520)
Q Consensus 331 ~~~~l~~la~~~~~~~G--~-~r~al~~l~~a~~ 361 (520)
+++++..|.+.+.+..| + -|..-.+|+.++.
T Consensus 526 ~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~ 559 (782)
T COG0466 526 TDEAIKDIIRYYTREAGVRNLEREIAKICRKAAK 559 (782)
T ss_pred cHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999876555 2 3444456666654
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.58 E-value=5.2e-14 Score=145.20 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=121.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.+.++|||++|+|||+|++++++++..... +..++++++.++. ..+...+... ....+...+ ..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~-~~~v~yi~~~~~~------~~~~~~~~~~------~~~~~~~~~---~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNP-NAKVVYVSSEKFT------NDFVNALRNN------KMEEFKEKY---RS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CCcEEEEEHHHHH------HHHHHHHHcC------CHHHHHHHH---Hh
Confidence 457999999999999999999999876532 4678888876542 2223332211 111222222 24
Q ss_pred ceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 244 ~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il 320 (520)
..+|+|||+|.+... .+..|+.+++........ +||++...+..+.. +.+++.+||.. ..+.|++|+.+++.+||
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~-iiits~~~p~~l~~-l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQ-IVLTSDRPPKELPG-LEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCC-EEEecCCCHHHHhh-hhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 679999999998765 356788888765323333 34433333333332 56789999964 35999999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.+++.. ..++++++++||.. ..|++|.+...+....
T Consensus 278 ~~~~~~~~~~l~~e~l~~ia~~---~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 278 QKKAEEEGLELPDEVLEFIAKN---IRSNVRELEGALNRLL 315 (405)
T ss_pred HHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 9999865 67899999999998 7778777665555443
No 124
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=6.9e-14 Score=144.18 Aligned_cols=173 Identities=12% Similarity=0.208 Sum_probs=124.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
.+.++|||++|+|||+|++++++.+... +..++|+++..+. ..+...+... ....+...+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~------~~~~~~l~~~------~~~~f~~~~---~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFT------EHLVSAIRSG------EMQRFRQFY---RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHH------HHHHHHHhcc------hHHHHHHHc---cc
Confidence 3679999999999999999999998765 5777888765432 2222332211 112222222 46
Q ss_pred ceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcC-CCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHH
Q psy17062 244 PCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANT-MDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEI 319 (520)
Q Consensus 244 ~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~-~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~I 319 (520)
..+|+|||++.+... .++.|+.+++..... .. .+|.+++. +..+. .+.+++.+||.. ..+.+++|+.+++..|
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k-~IIlts~~~p~~l~-~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GK-LIVISSTCAPQDLK-AMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CC-cEEEecCCCHHHHh-hhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 789999999999764 467788887755322 23 34444544 33233 367899999942 3599999999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 320 VQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 320 l~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
|+..++.. ..++++++++|+.. ..+|+|.+...+...+
T Consensus 280 L~~k~~~~~~~l~~evl~~la~~---~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 280 LERKAEALSIRIEETALDFLIEA---LSSNVKSLLHALTLLA 318 (445)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 99999876 67899999999997 7899999988888764
No 125
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.2e-14 Score=142.42 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=133.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC------CCeEEEEEccccCCChHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG------DKFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~------~~~~~i~v~~~~~~~~~~~ 212 (520)
+.++|++..++.+...+.. +..+.++|||||+|+|||++++.+++.+..... ..+.++.+++......
T Consensus 17 ~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV--- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH---
Confidence 4689999998888888764 344568999999999999999999998854211 0233444443322111
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcC--CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch
Q psy17062 213 YSRILELLLNVDAPPEQAKAMLERHFTR--PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~~~~~~~l~~~~~~--~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~ 290 (520)
..+...+...-.. .....||||||+|.+....++.|+..++.. ....++|++++...
T Consensus 91 ---------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~---~~~~~~Il~~~~~~--- 149 (367)
T PRK14970 91 ---------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP---PAHAIFILATTEKH--- 149 (367)
T ss_pred ---------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC---CCceEEEEEeCCcc---
Confidence 1111111111111 146779999999999876667777777642 34556666665432
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+.+.+||.+ +.|++++.+++..++...+... ..+++++++.|+.. ..||++.+++.++....
T Consensus 150 -kl~~~l~sr~~~--v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~---~~gdlr~~~~~lekl~~ 215 (367)
T PRK14970 150 -KIIPTILSRCQI--FDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK---ADGALRDALSIFDRVVT 215 (367)
T ss_pred -cCCHHHHhccee--EecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 245678899865 9999999999999999988765 45899999999998 77999999999987654
No 126
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=8.7e-15 Score=150.21 Aligned_cols=205 Identities=18% Similarity=0.194 Sum_probs=144.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH----
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS---- 214 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~---- 214 (520)
+.++|++.-...|...+.. ++.....||+||.|||||++|+.+|+.|.+... ...-.|..+.....+-.
T Consensus 16 ~evvGQe~v~~~L~nal~~---~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALEN---GRIAHAYLFSGPRGVGKTTIARILAKALNCENG----PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHh---CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC----CCCCcchhhhhhHhhhcCCcc
Confidence 4579999888888877764 344567899999999999999999999965421 11112222211000000
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhh
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERT 292 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~ 292 (520)
.++.--.-.....+++.+.+.+..-.. .++.|++|||+|.|.....+.|+..|+. ...+|++|++|....-
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~hV~FIlATTe~~K---- 161 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPSHVKFILATTEPQK---- 161 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc---CccCeEEEEecCCcCc----
Confidence 000000000011223333333333322 7889999999999998877777777774 4778999998887663
Q ss_pred hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 293 LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 293 l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
+...+.|||+. +.|..++.+++...|...+.+. ..++++++..|++. ..|.+|.++.+++++...
T Consensus 162 ip~TIlSRcq~--f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~---a~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 162 IPNTILSRCQR--FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA---AEGSLRDALSLLDQAIAF 227 (515)
T ss_pred Cchhhhhcccc--ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH---cCCChhhHHHHHHHHHHc
Confidence 45678899965 9999999999999999999876 77899999999998 899999999999998763
No 127
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=2.4e-14 Score=151.28 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=138.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----CCeEEEEEccccCC-ChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG----DKFVYVEMNALSIP-EPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----~~~~~i~v~~~~~~-~~~~~~ 213 (520)
+.++|++..++.+...+ ....+.++||+||||||||++|+++++.+..... .+.+++.++|.... +...+
T Consensus 65 ~~iiGqs~~i~~l~~al----~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~- 139 (531)
T TIGR02902 65 DEIIGQEEGIKALKAAL----CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI- 139 (531)
T ss_pred HHeeCcHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc-
Confidence 35899999988887654 3445678999999999999999999987643211 13578999986421 11111
Q ss_pred HHHHHHHhcCCCChH-HHH---------HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC------------
Q psy17062 214 SRILELLLNVDAPPE-QAK---------AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN------------ 271 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~-~~~---------~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------------ 271 (520)
...+.|...... ... ..-...+.. ....+|||||++.|....|+.|+.+|+...
T Consensus 140 ---~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~-a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 140 ---ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR-AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ---chhhcCCcccchhccccccccCCcccccCchhhc-cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 111112100000 000 000001111 356899999999999999999999986421
Q ss_pred -------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHH
Q psy17062 272 -------------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQL 337 (520)
Q Consensus 272 -------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~ 337 (520)
.....+.+|++|+... . .+.+++.+||. .|.|++++.+++.+|++..+++. ..+++++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p--~-~L~paLrsR~~--~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNP--E-EIPPALRSRCV--EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCc--c-cCChHHhhhhh--eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 0123456676665421 1 25678999985 49999999999999999999876 5789999998
Q ss_pred HHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 338 VARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 338 la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
|+.. ..+.|.++++++.++.
T Consensus 291 I~~y----~~n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 291 IVKY----ASNGREAVNIVQLAAG 310 (531)
T ss_pred HHHh----hhhHHHHHHHHHHHHH
Confidence 8773 4488999999999876
No 128
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=9.1e-14 Score=140.76 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=125.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKR 211 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~ 211 (520)
.+.++|++..++.|.+.+..... .+.+..+||+||+|+|||++|+.+++.+...... ...|..+.+
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C~~--- 75 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGECRA--- 75 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCCHH---
Confidence 35678999999999988876421 1145679999999999999999999988553210 011221111
Q ss_pred HHHHHHHHHh-------------cCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 212 AYSRILELLL-------------NVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 212 ~~~~i~~~l~-------------g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
+..+. |......++.+.+....... +...|+||||+|.|....++.|+.+|+.+ ..+
T Consensus 76 -----C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep---~~~ 147 (394)
T PRK07940 76 -----CRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP---PPR 147 (394)
T ss_pred -----HHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC---CCC
Confidence 00000 11111222222222221111 56779999999999998889999999854 233
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
.++|.+++..+ .+.+.+.|||.. +.|++|+.+++.++|.... .++++....++.. +.|++..|+.++
T Consensus 148 ~~fIL~a~~~~----~llpTIrSRc~~--i~f~~~~~~~i~~~L~~~~----~~~~~~a~~la~~---s~G~~~~A~~l~ 214 (394)
T PRK07940 148 TVWLLCAPSPE----DVLPTIRSRCRH--VALRTPSVEAVAEVLVRRD----GVDPETARRAARA---SQGHIGRARRLA 214 (394)
T ss_pred CeEEEEECChH----HChHHHHhhCeE--EECCCCCHHHHHHHHHHhc----CCCHHHHHHHHHH---cCCCHHHHHHHh
Confidence 44555555433 356788999964 9999999999998887433 2567888888887 777787777665
Q ss_pred H
Q psy17062 357 T 357 (520)
Q Consensus 357 ~ 357 (520)
.
T Consensus 215 ~ 215 (394)
T PRK07940 215 T 215 (394)
T ss_pred c
Confidence 3
No 129
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=8.6e-14 Score=139.09 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=134.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--CeEEEEEccccCCChHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD--KFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~i 216 (520)
..++|++.....+...+.. +..+..+||+||+|+|||++++.+++.+.+.... ........|..+. .+..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~----~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP----VWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH----HHHHH
Confidence 3578999998888888753 3445569999999999999999999998652110 0011111121111 11111
Q ss_pred HHH-------Hh-------c---CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 217 LEL-------LL-------N---VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 217 ~~~-------l~-------g---~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
... +. + .....+.+. .+...+... +...|+||||+|.|....++.|+..++.+ ..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp---p~~ 171 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---PAR 171 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC---CCC
Confidence 111 00 0 011122332 344444432 66789999999999999999999999864 345
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+|.+++.+. .+.+.+.|||. .++|++++.+++.++|........ ++++.++.+++. ..|+++.|++++
T Consensus 172 ~~fiLit~~~~----~llptIrSRc~--~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~---s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSG----RLLPTIRSRCQ--PISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQR---SKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChh----hccHHHHhhcc--EEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 55666666544 24578899995 499999999999999998543323 678888888887 889999999988
Q ss_pred Hhhh
Q psy17062 357 TNEK 360 (520)
Q Consensus 357 ~~a~ 360 (520)
....
T Consensus 242 ~~~~ 245 (351)
T PRK09112 242 NYGG 245 (351)
T ss_pred hcCc
Confidence 7643
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=2.5e-14 Score=158.48 Aligned_cols=249 Identities=15% Similarity=0.150 Sum_probs=170.9
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEE
Q psy17062 95 VSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-----STTGCMYI 169 (520)
Q Consensus 95 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl 169 (520)
.++.......++.+..+|... ...+....+....+.|+ ..++|++..+..+.+.+.....+ ++.+.+||
T Consensus 528 ~v~~~~i~~vv~~~tgip~~~-~~~~e~~~l~~l~~~L~-----~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf 601 (852)
T TIGR03345 528 EVDAQAVAEVVADWTGIPVGR-MVRDEIEAVLSLPDRLA-----ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLL 601 (852)
T ss_pred eecHHHHHHHHHHHHCCCchh-hchhHHHHHHHHHHHhc-----CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEE
Confidence 456666667777777777754 22333344445555444 45679999999999999876332 23346999
Q ss_pred EcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceEE
Q psy17062 170 SGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRPHGPCVL 247 (520)
Q Consensus 170 ~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~vL 247 (520)
+||+|||||.+|+++++.+... ...++.++++++...... ..+.|.+..+... ...+...+.. ..++||
T Consensus 602 ~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~~~-----~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svv 672 (852)
T TIGR03345 602 VGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAHTV-----SRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVV 672 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhhhh-----ccccCCCCCcccccccchHHHHHHh-CCCcEE
Confidence 9999999999999999998643 457889998877543322 3444543322111 1122222222 578999
Q ss_pred EEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC------------c-------------hhhhh
Q psy17062 248 LIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL------------P-------------ERTLK 294 (520)
Q Consensus 248 iiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~------------~-------------~~~l~ 294 (520)
+||||+.+.+..++.|+++++.... ...+.++|+|||.... . ...+.
T Consensus 673 llDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 752 (852)
T TIGR03345 673 LLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFK 752 (852)
T ss_pred EEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999975421 1256888998885110 0 01245
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.|.+|+. .|.|.+++.+++.+|+...+... ..++++++++|+....+...++|.+...++...
T Consensus 753 PEflnRi~--iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 753 PAFLGRMT--VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHhccee--EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 77889995 49999999999999998876542 358999999999986554456777777776643
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.1e-13 Score=145.84 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=136.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC-------------------CCeEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG-------------------DKFVYV 199 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~-------------------~~~~~i 199 (520)
+.++|++...+.|..++.. +..+..+|||||+|+|||++++.+++.+.+... ..+.++
T Consensus 17 ~~viGq~~~~~~L~~~i~~---~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT---NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 5689999998888888764 334556899999999999999999999853210 023344
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
++++..... ...+...+...-... ....|+||||+|.|....++.|+..|+.+ ...+
T Consensus 94 ~ld~~~~~~------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep---p~~t 152 (614)
T PRK14971 94 ELDAASNNS------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP---PSYA 152 (614)
T ss_pred EecccccCC------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC---CCCe
Confidence 444432111 112222222211111 56779999999999988888888888854 3456
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
++|++++... .+.+.+.+||.+ +.|.+++.+++..+|...+... ..+++++++.|+.. ..||+|.+++.+
T Consensus 153 ifIL~tt~~~----kIl~tI~SRc~i--v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~---s~gdlr~al~~L 223 (614)
T PRK14971 153 IFILATTEKH----KILPTILSRCQI--FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK---ADGGMRDALSIF 223 (614)
T ss_pred EEEEEeCCch----hchHHHHhhhhe--eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHH
Confidence 6777776432 356788999966 9999999999999999988765 56789999999998 789999999888
Q ss_pred Hhh
Q psy17062 357 TNE 359 (520)
Q Consensus 357 ~~a 359 (520)
+..
T Consensus 224 ekl 226 (614)
T PRK14971 224 DQV 226 (614)
T ss_pred HHH
Confidence 664
No 132
>KOG1051|consensus
Probab=99.56 E-value=1.3e-14 Score=156.24 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=124.2
Q ss_pred CCCch-HHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHHH
Q psy17062 140 SLPCR-EAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 140 ~l~gr-~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~~ 214 (520)
.++|| +++++++.+.|.+. ..+|.+|.|.||+|||.++..+++.+.....+ ...++.++...+..
T Consensus 187 Pvigr~deeirRvi~iL~Rr----tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a------ 256 (898)
T KOG1051|consen 187 PVIGRHDEEIRRVIEILSRK----TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA------ 256 (898)
T ss_pred CccCCchHHHHHHHHHHhcc----CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc------
Confidence 35687 99999999999764 22778999999999999999999998765432 23334444332211
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcC---CCCceEEEEcCCccccccChH----HHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTR---PHGPCVLLIDELDYLCNKRQD----VIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~---~~~~~vLiiDEid~l~~~~~~----~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
|. .....+...+..+... .+.+.||||||++++.....+ ....+|.... ..+.+.+||++....
T Consensus 257 -------Ga-~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L-~rg~l~~IGatT~e~ 327 (898)
T KOG1051|consen 257 -------GA-KRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLL-ARGGLWCIGATTLET 327 (898)
T ss_pred -------Cc-ccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHH-hcCCeEEEecccHHH
Confidence 11 1122355555555543 468899999999999887533 2222222211 244599999887443
Q ss_pred Cchhh-hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCC---CCCCHHHHHHHHHh
Q psy17062 288 LPERT-LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPP---TSRSEIFCANHYTN 358 (520)
Q Consensus 288 ~~~~~-l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~---~~G~~r~al~~l~~ 358 (520)
+.... -.+.+.+||+. +.++.|+.++...||......+ ..+++.++...+..... ...=...++++.++
T Consensus 328 Y~k~iekdPalErrw~l--~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dE 405 (898)
T KOG1051|consen 328 YRKCIEKDPALERRWQL--VLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDE 405 (898)
T ss_pred HHHHHhhCcchhhCcce--eEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHH
Confidence 32211 25788999976 7888888887777777655542 34444444443333322 22335555566655
Q ss_pred hh
Q psy17062 359 EK 360 (520)
Q Consensus 359 a~ 360 (520)
|+
T Consensus 406 a~ 407 (898)
T KOG1051|consen 406 AA 407 (898)
T ss_pred HH
Confidence 54
No 133
>KOG2228|consensus
Probab=99.56 E-value=3e-13 Score=128.32 Aligned_cols=193 Identities=21% Similarity=0.322 Sum_probs=148.9
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
.++++-.+.+ .|.|..++...+..++.+.+..+.++++++.||.|+|||.++...... .+..++++-.|.+|+.-..
T Consensus 15 l~~rl~~~~~--~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~ 91 (408)
T KOG2228|consen 15 LRERLCGPHI--NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQT 91 (408)
T ss_pred HHHHhcCCCc--ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchh
Confidence 4444444333 489999999999999999999999999999999999999999988887 5555667888999997766
Q ss_pred ChHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHcCC----CCceEEEEcCCcccccc-ChHHHHHHHHhcCCCCC
Q psy17062 208 EPKRAYSRILELLLNVD-------APPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNK-RQDVIYNILEYLNKPKS 275 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~-------~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~-~~~~L~~ll~~~~~~~~ 275 (520)
.+-++..|..++.-+. .+.......+...+... +.+.|.|+||+|.+... +|-.||++||.......
T Consensus 92 -dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~ 170 (408)
T KOG2228|consen 92 -DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARA 170 (408)
T ss_pred -hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCC
Confidence 6667777777764221 11222333344444333 55678889999998875 78899999998887889
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEe-CCCCHHHHHHHHHHHHh
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMF-KPYDHHQLQEIVQNRLK 325 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~-~~~~~~~~~~Il~~~l~ 325 (520)
++++||.|.+.+.++. +..++.|||...+|.+ |+...++...+++..+.
T Consensus 171 Piciig~Ttrld~lE~-LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 171 PICIIGVTTRLDILEL-LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CeEEEEeeccccHHHH-HHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 9999999999888774 6889999998775665 45577999999998874
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=1.2e-13 Score=151.41 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=143.2
Q ss_pred CchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhh--cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 122 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 122 ~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~--~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
...+..+++.|..+ .+|.++..++|.++|..... ...+..++|+||||+|||++++.+++.+ +..++
T Consensus 310 ~~~~~~~~~~l~~~-----~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l------~~~~~ 378 (784)
T PRK10787 310 KKDLRQAQEILDTD-----HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT------GRKYV 378 (784)
T ss_pred cccHHHHHHHhhhh-----ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEE
Confidence 45677888877665 46999999999998885432 2355679999999999999999999988 77888
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-CCceEEEEcCCccccccC----hHHHHHHHHhc----
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKR----QDVIYNILEYL---- 270 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~----~~~L~~ll~~~---- 270 (520)
.+++....+...+... ...+.|.. .. .+...+..+ ....||+|||+|.+.... .+.|+.+++..
T Consensus 379 ~i~~~~~~d~~~i~g~-~~~~~g~~--~G----~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~ 451 (784)
T PRK10787 379 RMALGGVRDEAEIRGH-RRTYIGSM--PG----KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVA 451 (784)
T ss_pred EEEcCCCCCHHHhccc-hhccCCCC--Cc----HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEE
Confidence 8887766553322111 01122221 11 222222333 244589999999998764 47888888731
Q ss_pred --------CCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC-----------CCCCC
Q psy17062 271 --------NKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN-----------NNCFH 331 (520)
Q Consensus 271 --------~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~-----------~~~~~ 331 (520)
...-+++++|+|+|... +.++|.+||.+ |.|.+|+.++..+|++.++.. ...++
T Consensus 452 ~~d~~~~~~~dls~v~~i~TaN~~~-----i~~aLl~R~~i--i~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~ 524 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSMN-----IPAPLLDRMEV--IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVD 524 (784)
T ss_pred EecccccccccCCceEEEEcCCCCC-----CCHHHhcceee--eecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEEC
Confidence 01237899999888753 67889999965 999999999999999988841 15688
Q ss_pred HHHHHHHHHHcCCCCC
Q psy17062 332 PDAVQLVARLEPPTSR 347 (520)
Q Consensus 332 ~~~l~~la~~~~~~~G 347 (520)
++++++|++.+....|
T Consensus 525 ~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 525 DSAIIGIIRYYTREAG 540 (784)
T ss_pred HHHHHHHHHhCCcccC
Confidence 9999999987665555
No 135
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.54 E-value=3.9e-14 Score=140.96 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=146.1
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++|+...+.++.+.+..... ...+|||+|++||||+++|+++....... +.+|+.+||..+.. . . +-..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~--~~~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~-~-~---l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP--LDRPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSE-N-L---LDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC--CCCCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCCh-H-H---HHHHH
Confidence 46888889999999888643 45569999999999999999998765332 57899999997653 1 1 12333
Q ss_pred hcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC---C
Q psy17062 221 LNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMD---L 288 (520)
Q Consensus 221 ~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~---~ 288 (520)
+|..... ......-...|.. ....+||||||+.|....|..|+.+++... ....++.+|++++..- .
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~-a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~ 149 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFER-ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALA 149 (329)
T ss_pred hccccccccCcccccCCchhh-CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHh
Confidence 3432110 0000000112222 357899999999999999999999997432 1124578888887531 1
Q ss_pred chhhhhhhhhccCCcceEEeCCCC--HHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYD--HHQLQEIVQNRLKNN---------NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~--~~~~~~Il~~~l~~~---------~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
....+...+..|+....|.+||+. .+++..++.+++... ..+++++++.|... .+.||+|...++++
T Consensus 150 ~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y--~WPGNvrEL~n~i~ 227 (329)
T TIGR02974 150 AEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY--HWPGNVRELKNVVE 227 (329)
T ss_pred hcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC--CCCchHHHHHHHHH
Confidence 122345678888876679999998 478888877766532 35899999999886 68999999999999
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
+++.
T Consensus 228 ~~~~ 231 (329)
T TIGR02974 228 RSVY 231 (329)
T ss_pred HHHH
Confidence 8876
No 136
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.54 E-value=4e-14 Score=137.38 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=76.4
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC-------Cc-hhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD-------LP-ERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-------~~-~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
-|.||||||+|.|+-.....|..+++.. -++ ++|.+||+-. .. ...++..|..||-+ |...||+.+
T Consensus 278 vpGVLFIDEvHmLDiEcFsfLnralEs~---~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRllI--I~t~py~~~ 351 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFSFLNRALESE---LSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRLLI--IRTKPYSEE 351 (398)
T ss_dssp EE-EEEEESGGGSBHHHHHHHHHHHTST---T---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEE--EEE----HH
T ss_pred ecceEEecchhhccHHHHHHHHHHhcCC---CCc-EEEEecCceeeeccCccCcCCCCCCcchHhhcEE--EECCCCCHH
Confidence 4889999999999998888888888832 344 4666788521 11 12356678899855 999999999
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 315 QLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 315 ~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
++.+||+.+++.. ..+++++++.|+.. +....+|.|++++..|.
T Consensus 352 ei~~Il~iR~~~E~v~i~~~al~~L~~i--g~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 352 EIKQILKIRAKEEDVEISEDALDLLTKI--GVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHHHHHCT--B-HHHHHHHHHH--HHHS-HHHHHHCHHHHH
T ss_pred HHHHHHHhhhhhhcCcCCHHHHHHHHHH--hhhccHHHHHHhhhhhh
Confidence 9999999999877 78899999999987 45678999999887653
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.2e-13 Score=144.76 Aligned_cols=188 Identities=17% Similarity=0.210 Sum_probs=131.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-------------------CeEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-------------------KFVYV 199 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-------------------~~~~i 199 (520)
+.++|++..+..|..++.. +..+..+||+||+|+|||++++.+++.+...... +..++
T Consensus 16 ~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~ 92 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVI 92 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEE
Confidence 4689999998888777754 2344567999999999999999999998532110 01122
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCc
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSR 276 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~ 276 (520)
.++.... .....+.+.+ ..+... ....|+||||+|.|.....+.|+..|+.. ...
T Consensus 93 ~i~~~~~------------------~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep---p~~ 150 (585)
T PRK14950 93 EMDAASH------------------TSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP---PPH 150 (585)
T ss_pred EEecccc------------------CCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC---CCC
Confidence 2222111 1111122211 111111 56789999999999887777887777754 345
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||++++..+ .+...+.+||.. +.|.+++..++..++...+... ..+++++++.|+.. ..|+++.+++.
T Consensus 151 tv~Il~t~~~~----kll~tI~SR~~~--i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~---s~Gdlr~al~~ 221 (585)
T PRK14950 151 AIFILATTEVH----KVPATILSRCQR--FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA---ATGSMRDAENL 221 (585)
T ss_pred eEEEEEeCChh----hhhHHHHhccce--eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHH
Confidence 66777665433 245678899864 9999999999999999988765 46899999999998 77999999988
Q ss_pred HHhhh
Q psy17062 356 YTNEK 360 (520)
Q Consensus 356 l~~a~ 360 (520)
++..+
T Consensus 222 LekL~ 226 (585)
T PRK14950 222 LQQLA 226 (585)
T ss_pred HHHHH
Confidence 87643
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=4.5e-14 Score=155.46 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=144.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~ 213 (520)
..++|++..++.+...+.....+ ++.+++||+||+|||||++|+.+++.+ +..++.++++++.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhccc--
Confidence 45679999999999998875322 234579999999999999999999998 77889999987654332
Q ss_pred HHHHHHHhcCCCChHH--HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQ--AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIA 283 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~--~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~t 283 (520)
...+.|....+.. ....+...+.. ...+||||||+|.+.+..++.|+++|+... ....++++|+|+
T Consensus 526 ---~~~lig~~~gyvg~~~~~~l~~~~~~-~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 526 ---VSRLIGAPPGYVGFEQGGLLTEAVRK-HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred ---HHHHhcCCCCCcccchhhHHHHHHHh-CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 2344444322111 11122222222 467999999999999999999999998541 113467788888
Q ss_pred cCCCC---------------------chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCH
Q psy17062 284 NTMDL---------------------PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHP 332 (520)
Q Consensus 284 n~~~~---------------------~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~ 332 (520)
|.-.. ....+.+.|.+|+. .+|.|.+++.+++.+|++..+..+ ..+++
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid-~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLD-AIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCC-eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 75210 01124567888986 459999999999999999888642 56789
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 333 DAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 333 ~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
+++++|+.......-.+|.....++.
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHH
Confidence 99999999743333344444444443
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.54 E-value=1e-13 Score=154.83 Aligned_cols=252 Identities=15% Similarity=0.150 Sum_probs=172.2
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-----CCCCeEE
Q psy17062 94 NVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-----STTGCMY 168 (520)
Q Consensus 94 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lL 168 (520)
..+++......++....+|...... .....+....+.+ ...++|++..++.+...+.....+ .+...+|
T Consensus 526 ~~v~~~~i~~v~~~~tgip~~~~~~-~e~~~l~~l~~~l-----~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~L 599 (852)
T TIGR03346 526 EEVTAEEIAEVVSRWTGIPVSKMLE-GEREKLLHMEEVL-----HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFL 599 (852)
T ss_pred CCcCHHHHHHHHHHhcCCCcccccH-HHHHHHHHHHHHh-----hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEE
Confidence 4566666677777777777654222 2233444444443 345789999999999999986432 2346799
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceE
Q psy17062 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRPHGPCV 246 (520)
Q Consensus 169 l~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~v 246 (520)
|+||+|||||++|+.+++.+... +..++.++|..+..... ...+.|.+..+... ...+...+.. ...+|
T Consensus 600 f~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~-----~~~l~g~~~g~~g~~~~g~l~~~v~~-~p~~v 670 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHS-----VARLIGAPPGYVGYEEGGQLTEAVRR-KPYSV 670 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccch-----HHHhcCCCCCccCcccccHHHHHHHc-CCCcE
Confidence 99999999999999999998654 56889999988755332 23344433221111 1122222221 35679
Q ss_pred EEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCC---------------------chhhhhhhh
Q psy17062 247 LLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDL---------------------PERTLKGKV 297 (520)
Q Consensus 247 LiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~---------------------~~~~l~~~l 297 (520)
|+||||+.+.+..++.|+++|+... ....+.+||++||.-.. ....+.+.|
T Consensus 671 lllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel 750 (852)
T TIGR03346 671 VLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEF 750 (852)
T ss_pred EEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHH
Confidence 9999999999999999999997542 11346778999887211 112244678
Q ss_pred hccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 298 SSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 298 ~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+|+. .++.|.|++.+++.+|+...+..+ ..++++++++|++......+++|...+.++....
T Consensus 751 ~~Rid-~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 751 LNRID-EIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred hcCcC-eEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence 88886 359999999999999998777642 5689999999999743346788887777776653
No 140
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.6e-13 Score=139.63 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=120.1
Q ss_pred CCchHHHHHHHHHHHHHHhhc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 141 LPCREAEFQSIHRFLLSKISQ------------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~------------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
++|++...+.+...+.++... ....++||+||||||||++|+.+++.+ +.+++.+++..+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~id~~~l~~ 146 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIADATTLTE 146 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceecchhhccc
Confidence 689999999887666432111 134689999999999999999999988 88999999877642
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC------CCCceEEEEcCCcccccc--------------ChHHHHHHHH
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTR------PHGPCVLLIDELDYLCNK--------------RQDVIYNILE 268 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~------~~~~~vLiiDEid~l~~~--------------~~~~L~~ll~ 268 (520)
. .+.|.. ....+...+.. ...+.||||||||.+... .|+.|+++|+
T Consensus 147 ~---------gyvG~d-----~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 147 A---------GYVGED-----VENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred C---------Ccccch-----HHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh
Confidence 1 111211 11112222111 146789999999999764 3678889997
Q ss_pred hcC----------CCCCcEEEEEEEcC--------CC----------------------------------------Cch
Q psy17062 269 YLN----------KPKSRLIILCIANT--------MD----------------------------------------LPE 290 (520)
Q Consensus 269 ~~~----------~~~~~v~vI~~tn~--------~~----------------------------------------~~~ 290 (520)
... ......++|.|+|. .. +..
T Consensus 213 g~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~ 292 (412)
T PRK05342 213 GTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIK 292 (412)
T ss_pred cCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHH
Confidence 421 11122334444333 00 001
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHH----HHhCC----------CCCCHHHHHHHHHHcC
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQN----RLKNN----------NCFHPDAVQLVARLEP 343 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~----~l~~~----------~~~~~~~l~~la~~~~ 343 (520)
+.+.+.|..|+.. .+.|.+++.+++..|+.. .++++ ..++++++++|++...
T Consensus 293 ~gf~PEflgRld~-iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~ 358 (412)
T PRK05342 293 FGLIPEFIGRLPV-VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAI 358 (412)
T ss_pred HhhhHHHhCCCCe-eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCC
Confidence 1246788899974 489999999999999973 33221 5789999999999843
No 141
>KOG2004|consensus
Probab=99.53 E-value=1.8e-13 Score=141.01 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=146.6
Q ss_pred chHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 123 TPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 123 ~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~--~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
-.+..+++.|..+. +|.++--++|.++|...... -.+..+.|+||||+|||++++.||+.| +..|+.
T Consensus 400 ~dl~~Ak~iLdeDH-----Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL------nRkFfR 468 (906)
T KOG2004|consen 400 LDLARAKEILDEDH-----YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL------NRKFFR 468 (906)
T ss_pred hhHHHHHHhhcccc-----cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh------CCceEE
Confidence 44567777777654 59999999999999876443 346678999999999999999999999 888998
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHcCCCCceEEEEcCCccccccC----hHHHHHHHHhcC
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPP-----EQAKAMLERHFTRPHGPCVLLIDELDYLCNKR----QDVIYNILEYLN 271 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~-----~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~----~~~L~~ll~~~~ 271 (520)
++...+++ ...+.|+.-.+ ..+.+.|...- -..-+++|||||.+.... ...|+.+|+--+
T Consensus 469 fSvGG~tD--------vAeIkGHRRTYVGAMPGkiIq~LK~v~---t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQ 537 (906)
T KOG2004|consen 469 FSVGGMTD--------VAEIKGHRRTYVGAMPGKIIQCLKKVK---TENPLILIDEVDKLGSGHQGDPASALLELLDPEQ 537 (906)
T ss_pred Eecccccc--------HHhhcccceeeeccCChHHHHHHHhhC---CCCceEEeehhhhhCCCCCCChHHHHHHhcChhh
Confidence 88887776 45555554322 23333333332 345689999999998532 356777775211
Q ss_pred ------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----------C
Q psy17062 272 ------------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----------N 328 (520)
Q Consensus 272 ------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----------~ 328 (520)
..-++|.+|||+|..+. +++++..|+.+ |.++.|..++-.+|.+.+|-.. .
T Consensus 538 NanFlDHYLdVp~DLSkVLFicTAN~idt----IP~pLlDRMEv--IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v 611 (906)
T KOG2004|consen 538 NANFLDHYLDVPVDLSKVLFICTANVIDT----IPPPLLDRMEV--IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV 611 (906)
T ss_pred ccchhhhccccccchhheEEEEecccccc----CChhhhhhhhe--eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc
Confidence 12468999999999884 46678888865 9999999999999999887532 6
Q ss_pred CCCHHHHHHHHHHcCCCCC
Q psy17062 329 CFHPDAVQLVARLEPPTSR 347 (520)
Q Consensus 329 ~~~~~~l~~la~~~~~~~G 347 (520)
.++++++..|.+.+.+..|
T Consensus 612 ~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 612 KISDDALLALIERYCREAG 630 (906)
T ss_pred CccHHHHHHHHHHHHHHHh
Confidence 7888898888888665555
No 142
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=1.4e-13 Score=139.16 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=129.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhc------C--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQ------S--------TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~------~--------~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.++|+++..+.+...+.++... . ...++||+||||||||++|+.+++.+ +.+++.+++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCeEEechhh
Confidence 4689999999887776432221 1 13689999999999999999999988 78888888876
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC------CCCceEEEEcCCccccc--------------cChHHHHH
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR------PHGPCVLLIDELDYLCN--------------KRQDVIYN 265 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~------~~~~~vLiiDEid~l~~--------------~~~~~L~~ 265 (520)
+.. ..+.|.. ....+...+.. ...+.||||||+|.+.. ..|+.|++
T Consensus 152 L~~---------~gyvG~d-----~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~ 217 (413)
T TIGR00382 152 LTE---------AGYVGED-----VENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLK 217 (413)
T ss_pred ccc---------ccccccc-----HHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHH
Confidence 532 1122221 11122222211 13567999999999986 34678888
Q ss_pred HHHhcC----------CCCCcEEEEEEEcCC---------------------------CC-------------------c
Q psy17062 266 ILEYLN----------KPKSRLIILCIANTM---------------------------DL-------------------P 289 (520)
Q Consensus 266 ll~~~~----------~~~~~v~vI~~tn~~---------------------------~~-------------------~ 289 (520)
+|+... ....+.++|.|+|-. +. .
T Consensus 218 iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~ 297 (413)
T TIGR00382 218 IIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLV 297 (413)
T ss_pred HhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHH
Confidence 886431 112345666666640 00 0
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHH----HhCC----------CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNR----LKNN----------NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~----l~~~----------~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
.+.+.+.|..|+.. .+.|.+++.+++.+|+... ++++ ..++++++++|++......-.+|....+
T Consensus 298 ~~g~~PEflgRld~-Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~i 376 (413)
T TIGR00382 298 KFGLIPEFIGRLPV-IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSI 376 (413)
T ss_pred HHhhHHHHhCCCCe-EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHH
Confidence 11256788999964 4889999999999998763 2211 6788999999999854433334444444
Q ss_pred HHhh
Q psy17062 356 YTNE 359 (520)
Q Consensus 356 l~~a 359 (520)
++..
T Consensus 377 ie~~ 380 (413)
T TIGR00382 377 VEGL 380 (413)
T ss_pred HHHh
Confidence 4443
No 143
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=3e-13 Score=124.42 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--------------------CeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD--------------------KFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~--------------------~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
..+..+||+||+|+|||++++.+++.+...... ++.++..+...
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~---------------- 75 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS---------------- 75 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc----------------
Confidence 455679999999999999999999998643100 11122111111
Q ss_pred cCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhh
Q psy17062 222 NVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVS 298 (520)
Q Consensus 222 g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~ 298 (520)
...+.+...+ ..+... ....|+||||+|.+....++.|+..++.. .....+|++++... .+.+.+.
T Consensus 76 ---~~~~~i~~i~-~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~~~----~l~~~i~ 144 (188)
T TIGR00678 76 ---IKVDQVRELV-EFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEP---PPNTLFILITPSPE----KLLPTIR 144 (188)
T ss_pred ---CCHHHHHHHH-HHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEECChH----hChHHHH
Confidence 1112222222 222221 56789999999999988888888888754 33566666676542 3567889
Q ss_pred ccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 299 SRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 299 sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
+|+.. +.|.+++.+++.++|... .+++++++.++.. +.|++|+|
T Consensus 145 sr~~~--~~~~~~~~~~~~~~l~~~-----gi~~~~~~~i~~~---~~g~~r~~ 188 (188)
T TIGR00678 145 SRCQV--LPFPPLSEEALLQWLIRQ-----GISEEAAELLLAL---AGGSPGAA 188 (188)
T ss_pred hhcEE--eeCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHH---cCCCcccC
Confidence 99964 999999999999999876 2688999999998 67887753
No 144
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.51 E-value=1.4e-13 Score=131.40 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---CeEEEEEccccCCChHHHHHHHHHHHhc
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD---KFVYVEMNALSIPEPKRAYSRILELLLN 222 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~---~~~~i~v~~~~~~~~~~~~~~i~~~l~g 222 (520)
..++.+.+.+..- ......|+||+|++|.|||++++.+.+........ .++++++.+....+...+|..|+..+.-
T Consensus 44 ~~L~~L~~Ll~~P-~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYP-KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCC-cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3444455444432 33456789999999999999999999866443322 4689999999999999999999999843
Q ss_pred CCCC---hHHHHHHHHHHHcCCCCceEEEEcCCcccccc---ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhh
Q psy17062 223 VDAP---PEQAKAMLERHFTRPHGPCVLLIDELDYLCNK---RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGK 296 (520)
Q Consensus 223 ~~~~---~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~---~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~ 296 (520)
.... ..........+|.. .+..+|||||+|++... .|..++++|..+. +.-++.+|+++...-..-..-+++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~-~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRR-LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHH-cCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHHHHHHhccCHH
Confidence 2211 12222222223322 47889999999997553 4667778887663 344555555543321111112689
Q ss_pred hhccCCcceEEeCCCCH-HHHHHHHHHHHhCC------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCcee
Q psy17062 297 VSSRMGLTRLMFKPYDH-HQLQEIVQNRLKNN------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDW 369 (520)
Q Consensus 297 l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~~------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~ 369 (520)
+.+||.. +.+|.+.. ++...+|...-..+ ...+++...+|...+.|..|++.+ ++..|+.
T Consensus 201 La~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~---ll~~aA~-------- 267 (302)
T PF05621_consen 201 LASRFEP--FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR---LLNAAAI-------- 267 (302)
T ss_pred HHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH---HHHHHHH--------
Confidence 9999976 88898866 44455555444433 445566778888886666666666 4555554
Q ss_pred cccccchhhhhcccccc
Q psy17062 370 VSSSSDEEEKEENHVIG 386 (520)
Q Consensus 370 ~a~~~~~~~~~~~~v~~ 386 (520)
.|...+.+.++.+.+..
T Consensus 268 ~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 268 AAIRSGEERITREILDK 284 (302)
T ss_pred HHHhcCCceecHHHHhh
Confidence 24445666666666543
No 145
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.51 E-value=4.9e-13 Score=130.44 Aligned_cols=223 Identities=15% Similarity=0.214 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~ 225 (520)
....++...+...+. ...+.++|+|++|+|||++++.+++.+... ...+..+. ....+...++..++..+ |...
T Consensus 26 ~~~~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~---~~~~~~~~-~~~~~~~~~l~~i~~~l-G~~~ 99 (269)
T TIGR03015 26 KGHKRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLDQE---RVVAAKLV-NTRVDAEDLLRMVAADF-GLET 99 (269)
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC---CeEEeeee-CCCCCHHHHHHHHHHHc-CCCC
Confidence 334455555554432 334579999999999999999999987422 22222221 12245667777777666 4322
Q ss_pred C---hHHHHHHHHHHHcC---CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhh---hhhh
Q psy17062 226 P---PEQAKAMLERHFTR---PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERT---LKGK 296 (520)
Q Consensus 226 ~---~~~~~~~l~~~~~~---~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~---l~~~ 296 (520)
. .......+...+.. .+.+.+|+|||+|.+.....+.|..+.+........+.+|.++. ++..+.. ....
T Consensus 100 ~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~ 178 (269)
T TIGR03015 100 EGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQ 178 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHH
Confidence 1 11222333333322 25678999999999987666666665554322233344444433 3322211 1235
Q ss_pred hhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCceecc
Q psy17062 297 VSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDWVS 371 (520)
Q Consensus 297 l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~~a 371 (520)
+.+|+. ..+++++++.+++.+++..++... ..+++++++.|++. +.|+++....++..+... +
T Consensus 179 l~~r~~-~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~---s~G~p~~i~~l~~~~~~~--------a 246 (269)
T TIGR03015 179 LRQRII-ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF---SRGIPRLINILCDRLLLS--------A 246 (269)
T ss_pred HHhhee-eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH---cCCcccHHHHHHHHHHHH--------H
Confidence 667764 459999999999999999998743 36899999999998 677777766666665431 2
Q ss_pred cccchhhhhccccccc
Q psy17062 372 SSSDEEEKEENHVIGK 387 (520)
Q Consensus 372 ~~~~~~~~~~~~v~~a 387 (520)
...+...++.+++..+
T Consensus 247 ~~~~~~~i~~~~v~~~ 262 (269)
T TIGR03015 247 FLEEKREIGGEEVREV 262 (269)
T ss_pred HHcCCCCCCHHHHHHH
Confidence 2233345565555544
No 146
>KOG0742|consensus
Probab=99.51 E-value=3.2e-13 Score=130.67 Aligned_cols=176 Identities=17% Similarity=0.183 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 145 EAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
++-+++|...-.+... ..+..|+|+|||||||||..++.+++.- +..+..+.+.++.- |
T Consensus 364 e~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAP-----------l--- 423 (630)
T KOG0742|consen 364 EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAP-----------L--- 423 (630)
T ss_pred HHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccc-----------c---
Confidence 3444444444333222 2456799999999999999999999987 78777777666531 0
Q ss_pred CCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccC---------hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchh
Q psy17062 224 DAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKR---------QDVIYNILEYLNKPKSRLIILCIANTMDLPER 291 (520)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~---------~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~ 291 (520)
..+....+.++|.-+ ++..+|||||+|.+..++ ...|..+|-.-......++++.++|.+..++
T Consensus 424 ---G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlD- 499 (630)
T KOG0742|consen 424 ---GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD- 499 (630)
T ss_pred ---chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchh-
Confidence 112344555566554 788999999999987653 2345555533334456789999999988655
Q ss_pred hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---------------------------CCCCHHHHHHHHHHcCC
Q psy17062 292 TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---------------------------NCFHPDAVQLVARLEPP 344 (520)
Q Consensus 292 ~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---------------------------~~~~~~~l~~la~~~~~ 344 (520)
.++..|++ ..|+||-|-.+++..+|..++.++ ....+..+...|+++.|
T Consensus 500 ---sAV~DRid-e~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 500 ---SAVNDRID-EVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred ---HHHHhhhh-heeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 45666775 469999999999999999998865 11334556677777777
Q ss_pred CCCC
Q psy17062 345 TSRS 348 (520)
Q Consensus 345 ~~G~ 348 (520)
++|.
T Consensus 576 fSGR 579 (630)
T KOG0742|consen 576 FSGR 579 (630)
T ss_pred CcHH
Confidence 7765
No 147
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=9.8e-13 Score=141.24 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=137.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----CCeEEEEEccccCC-ChHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG----DKFVYVEMNALSIP-EPKRA 212 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----~~~~~i~v~~~~~~-~~~~~ 212 (520)
.+.++|++..+..+...+ ....+.+++|+||+|||||++|+.+++....... .+.+++.++|..+. ++..+
T Consensus 153 ~~~iiGqs~~~~~l~~~i----a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKV----ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HHhceeCcHHHHHHHHHH----hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 346889999888876555 3344567999999999999999999987743321 14578999987753 22221
Q ss_pred HHHHHHHHhcCCCCh--HHHHHHHHH---------HHcCCCCceEEEEcCCccccccChHHHHHHHHhcC----------
Q psy17062 213 YSRILELLLNVDAPP--EQAKAMLER---------HFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN---------- 271 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~--~~~~~~l~~---------~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~---------- 271 (520)
...+.|..... ......+.. .+.. ....+|||||++.|....+..|..+++...
T Consensus 229 ----~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~-asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 229 ----TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTD-AHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred ----hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhh-cCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 12222321000 001111110 1111 245699999999999998999998886421
Q ss_pred ---------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHH
Q psy17062 272 ---------------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAV 335 (520)
Q Consensus 272 ---------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l 335 (520)
.....+++|++++.. .. .+.+++.+||.. +.|++++.+++..|++..+... ..++++++
T Consensus 304 ~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~--~~-~l~~aLrSR~~~--i~~~pls~edi~~Il~~~a~~~~v~ls~eal 378 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEGAPADFVLIGATTRD--PE-EINPALRSRCAE--VFFEPLTPEDIALIVLNAAEKINVHLAAGVE 378 (615)
T ss_pred CCcccchhhhhhcccCccceEEEEEecccc--cc-ccCHHHHhceeE--EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 012346666655442 12 256788899854 8999999999999999998865 45789999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 336 QLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 336 ~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.|++ +.++.|++++.+..+.
T Consensus 379 ~~L~~----ys~~gRraln~L~~~~ 399 (615)
T TIGR02903 379 ELIAR----YTIEGRKAVNILADVY 399 (615)
T ss_pred HHHHH----CCCcHHHHHHHHHHHH
Confidence 99888 4557799999887664
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=3.7e-13 Score=149.91 Aligned_cols=233 Identities=15% Similarity=0.158 Sum_probs=161.1
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-----CCCCeEE
Q psy17062 94 NVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-----STTGCMY 168 (520)
Q Consensus 94 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lL 168 (520)
..+|.......++....+|... ...+....+....+.|+ ..++|++..+..|...+.....+ ++..++|
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~-~~~~~~~~l~~l~~~L~-----~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~l 543 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNK-LTKSESEKLLHMEETLH-----KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFL 543 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchh-hchhHHHHHHHHHHHhc-----CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 3567777777788888888754 22333344445555554 45679999999999999875432 2335689
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceE
Q psy17062 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRPHGPCV 246 (520)
Q Consensus 169 l~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~v 246 (520)
|+||+|||||++|+.+++.+... ...++.+++.++.....+ ..+.|.+..+... ...+...+.. ...+|
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~~-----~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~V 614 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHTV-----SKLIGSPPGYVGYNEGGQLTEAVRK-KPYTV 614 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhccccccH-----HHhcCCCCcccCcCccchHHHHHHh-CCCeE
Confidence 99999999999999999998654 467889998887654332 3334432211100 1112222211 35689
Q ss_pred EEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCC-------------------c----------
Q psy17062 247 LLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDL-------------------P---------- 289 (520)
Q Consensus 247 LiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~-------------------~---------- 289 (520)
|+|||+|.+.+..++.|+++|+... ....+.++|+|||.-.. .
T Consensus 615 vllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 694 (821)
T CHL00095 615 VLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694 (821)
T ss_pred EEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence 9999999999999999999998531 12357889998885210 0
Q ss_pred ----hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHc
Q psy17062 290 ----ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLE 342 (520)
Q Consensus 290 ----~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~ 342 (520)
...+.+.|.+|++ .+|.|.+++.+++.+|+...+... ..++++++++|+...
T Consensus 695 ~~~~~~~f~peflnRid-~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 695 NEELKQFFRPEFLNRLD-EIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHhcCHHHhccCC-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 0113467889985 359999999999999999887653 578999999999974
No 149
>PRK04132 replication factor C small subunit; Provisional
Probab=99.49 E-value=4.9e-13 Score=145.43 Aligned_cols=165 Identities=15% Similarity=0.188 Sum_probs=128.0
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--
Q psy17062 166 CMYISG--VPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-- 241 (520)
Q Consensus 166 ~lLl~G--~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-- 241 (520)
.-++.| |++.||||+|+++|+++..... +..++++|+++..... .++. .+.......
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~-~~~~lElNASd~rgid-~IR~-----------------iIk~~a~~~~~ 626 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENW-RHNFLELNASDERGIN-VIRE-----------------KVKEFARTKPI 626 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccc-cCeEEEEeCCCcccHH-HHHH-----------------HHHHHHhcCCc
Confidence 355668 9999999999999999854311 4679999999854321 1121 222211111
Q ss_pred --CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHH
Q psy17062 242 --HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEI 319 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~I 319 (520)
....|+||||+|.|....|+.|+.+++.+ ..++.+|++||... .+.+.+.|||.. +.|++++.+++...
T Consensus 627 ~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep---~~~~~FILi~N~~~----kIi~tIrSRC~~--i~F~~ls~~~i~~~ 697 (846)
T PRK04132 627 GGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNYSS----KIIEPIQSRCAI--FRFRPLRDEDIAKR 697 (846)
T ss_pred CCCCCEEEEEECcccCCHHHHHHHHHHhhCC---CCCeEEEEEeCChh----hCchHHhhhceE--EeCCCCCHHHHHHH
Confidence 24579999999999999999999999954 45778888888765 356789999965 99999999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 320 VQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 320 l~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
|+..++.. ..++++++..|+.. +.||+|.|+++++.++.
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~---s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYI---AEGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 99988764 45789999999998 99999999999998765
No 150
>KOG1969|consensus
Probab=99.49 E-value=6.5e-13 Score=137.28 Aligned_cols=173 Identities=22% Similarity=0.286 Sum_probs=129.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
...+||+||||.||||||+.+|++. |+.++++|+++-.+...+-..|...+... ..+..-.+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~------------s~l~adsr 387 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNH------------SVLDADSR 387 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhc------------cccccCCC
Confidence 3579999999999999999999999 99999999999887665555544333211 12222268
Q ss_pred ceEEEEcCCccccccChHHHHHHHHhcC-----CCC-------------CcEEEEEEEcCCCCchhhhhhhhhccCCcce
Q psy17062 244 PCVLLIDELDYLCNKRQDVIYNILEYLN-----KPK-------------SRLIILCIANTMDLPERTLKGKVSSRMGLTR 305 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~~~~L~~ll~~~~-----~~~-------------~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~ 305 (520)
|..|||||||--....-++|+.++..-. ... -.-.|||+||+.-.+. .+.++.-+ ..
T Consensus 388 P~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPa---LR~Lr~~A--~i 462 (877)
T KOG1969|consen 388 PVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPA---LRPLRPFA--EI 462 (877)
T ss_pred cceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchh---hhhcccce--EE
Confidence 9999999999887666778888886210 000 1225788889754322 23444333 44
Q ss_pred EEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 306 LMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 306 i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
|.|.++...-+.+-|+..|... ..++..++..|+.+ +.+|+|..|+.|+..+..
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el---~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRADSKALNALCEL---TQNDIRSCINTLQFLASN 517 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH---hcchHHHHHHHHHHHHHh
Confidence 9999999999999999999876 67788899999998 899999999999987653
No 151
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.49 E-value=2.5e-13 Score=135.37 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=146.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
.+.++|++..+.++.+.+..... ...+|||+|++||||+++|+++....... +.+++.++|..+.. ..+ -
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~--~~~pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~~~-~~~----~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP--LDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALNE-NLL----D 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCCCH-HHH----H
Confidence 35689999999999999998643 45569999999999999999998654222 56899999998752 211 2
Q ss_pred HHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC
Q psy17062 218 ELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL 288 (520)
Q Consensus 218 ~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~ 288 (520)
..++|..... ......-...+.. .....|||||++.|....|..|..+++.... ...++.+|++++..-.
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~-a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~ 153 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER-ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (326)
T ss_pred HHHccccccccCCcccccCCchhc-cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH
Confidence 3333432110 0000000112222 3567899999999999999999999974321 1135777877665210
Q ss_pred ---chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC---------CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 289 ---PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN---------NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 289 ---~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~---------~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
....+...+..||....|.+||+.. +++..++.+++... ..+++++++.|... .+.||++...+
T Consensus 154 ~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y--~WPGNvrEL~~ 231 (326)
T PRK11608 154 AMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY--RWPGNIRELKN 231 (326)
T ss_pred HHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC--CCCcHHHHHHH
Confidence 1123456778888777799999976 67777777765432 35899999999886 69999999999
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
++++++.
T Consensus 232 vl~~a~~ 238 (326)
T PRK11608 232 VVERSVY 238 (326)
T ss_pred HHHHHHH
Confidence 9999875
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=4.5e-13 Score=129.53 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC-
Q psy17062 148 FQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP- 226 (520)
Q Consensus 148 i~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~- 226 (520)
++++.+.+...+.. +.+++|+||||||||++|+++++.+ +.+++.++|....+...++.. +.+....
T Consensus 7 ~~~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~----~~~~~~~~ 74 (262)
T TIGR02640 7 VKRVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGS----YAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhh----hcccchhh
Confidence 44455555444343 4569999999999999999999977 888999999876554433221 1110000
Q ss_pred -hHHHHHHH------------HHHHcCC-CCceEEEEcCCccccccChHHHHHHHHhcC--C-----------CCCcEEE
Q psy17062 227 -PEQAKAML------------ERHFTRP-HGPCVLLIDELDYLCNKRQDVIYNILEYLN--K-----------PKSRLII 279 (520)
Q Consensus 227 -~~~~~~~l------------~~~~~~~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--~-----------~~~~v~v 279 (520)
.......+ ...+..+ ..+.+|+|||++.+..+.++.|+.+|+... . .+.++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv 154 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV 154 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence 00000000 0001111 356799999999999999999999997421 0 1236779
Q ss_pred EEEEcCCCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCC-------CCCCHHH
Q psy17062 280 LCIANTMDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPP-------TSRSEIF 351 (520)
Q Consensus 280 I~~tn~~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~-------~~G~~r~ 351 (520)
|+|+|...... ..+...+.+||.. +.++.|+.++..+|+..+.. ++++.++.+.+.+.. ..-..|.
T Consensus 155 IaTsN~~~~~g~~~l~~aL~~R~~~--i~i~~P~~~~e~~Il~~~~~----~~~~~~~~iv~~~~~~R~~~~~~~~~~r~ 228 (262)
T TIGR02640 155 IFTSNPVEYAGVHETQDALLDRLIT--IFMDYPDIDTETAILRAKTD----VAEDSAATIVRLVREFRASGDEITSGLRA 228 (262)
T ss_pred EEeeCCccccceecccHHHHhhcEE--EECCCCCHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHhhCCccCCcHHH
Confidence 99999764221 2246788899854 89999999999999998763 356666665554321 1113888
Q ss_pred HHHHHHhhhcc
Q psy17062 352 CANHYTNEKKS 362 (520)
Q Consensus 352 al~~l~~a~~~ 362 (520)
++.+++.++..
T Consensus 229 ~i~~~~~~~~~ 239 (262)
T TIGR02640 229 SLMIAEVATQQ 239 (262)
T ss_pred HHHHHHHHHHc
Confidence 88888877663
No 153
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=1.1e-12 Score=122.44 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGP 244 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~ 244 (520)
..++||||+|+|||+|++++++.. +.. ++...... . ..+ ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~------~~~--~~~~~~~~------------------------~---~~~---~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS------NAY--IIKDIFFN------------------------E---EIL---EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc------CCE--Ecchhhhc------------------------h---hHH---hcC
Confidence 569999999999999999988764 332 22211100 0 011 134
Q ss_pred eEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcc-eEEeCCCCHHHHHHHHHHH
Q psy17062 245 CVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLT-RLMFKPYDHHQLQEIVQNR 323 (520)
Q Consensus 245 ~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~-~i~~~~~~~~~~~~Il~~~ 323 (520)
.+|+|||||.+ .+..|..+++..... +..++|+++..+... .+ +++.||+... .+.+.+|+.+++..+++..
T Consensus 87 d~lliDdi~~~---~~~~lf~l~N~~~e~-g~~ilits~~~p~~l--~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 87 NAFIIEDIENW---QEPALLHIFNIINEK-QKYLLLTSSDKSRNF--TL-PDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred CEEEEeccccc---hHHHHHHHHHHHHhc-CCEEEEEcCCCcccc--ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 68999999965 234677777655433 345555544443322 25 7899999622 5999999999999999998
Q ss_pred HhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 324 LKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 324 l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+... ..++++++++|+.. ..||+|.+++.+....
T Consensus 160 ~~~~~l~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 160 FSISSVTISRQIIDFLLVN---LPREYSKIIEILENIN 194 (214)
T ss_pred HHHcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHH
Confidence 8754 57999999999998 7889999888887743
No 154
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.7e-12 Score=129.02 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=129.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeE-----EEE-EccccCCChHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFV-----YVE-MNALSIPEPKRA 212 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~-----~i~-v~~~~~~~~~~~ 212 (520)
+.++|++.....|.+.+.. +..+..+||+||+|+||+++|..+++.+.+....+.. ... -.|..+. .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~----~ 91 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP----V 91 (365)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----H
Confidence 3578999998888877764 3445669999999999999999999999754311000 000 0011111 1
Q ss_pred HHHHHHHH-------------hc----CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCC
Q psy17062 213 YSRILELL-------------LN----VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNK 272 (520)
Q Consensus 213 ~~~i~~~l-------------~g----~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~ 272 (520)
+..+...- .+ .....+++. .+...+... ..+.|+||||+|.+....++.|+..++..
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep-- 168 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP-- 168 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC--
Confidence 11110000 00 011222222 233333322 67889999999999998899999999854
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
..+.++|.+++..+. +.+.+.+||.. |.|++++.+++.++|..... ...+..+..++.. +.|+++.+
T Consensus 169 -p~~~~~IL~t~~~~~----llpti~SRc~~--i~l~~l~~~~i~~~L~~~~~---~~~~~~~~~l~~~---s~Gsp~~A 235 (365)
T PRK07471 169 -PARSLFLLVSHAPAR----LLPTIRSRCRK--LRLRPLAPEDVIDALAAAGP---DLPDDPRAALAAL---AEGSVGRA 235 (365)
T ss_pred -CCCeEEEEEECCchh----chHHhhccceE--EECCCCCHHHHHHHHHHhcc---cCCHHHHHHHHHH---cCCCHHHH
Confidence 345667777777652 45678899965 99999999999999987653 2345555677776 88999999
Q ss_pred HHHHHh
Q psy17062 353 ANHYTN 358 (520)
Q Consensus 353 l~~l~~ 358 (520)
+.++..
T Consensus 236 l~ll~~ 241 (365)
T PRK07471 236 LRLAGG 241 (365)
T ss_pred HHHhcc
Confidence 888764
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.48 E-value=2.4e-13 Score=151.11 Aligned_cols=250 Identities=12% Similarity=0.134 Sum_probs=164.7
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCchHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc-----CCCCeEE
Q psy17062 94 NVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-----STTGCMY 168 (520)
Q Consensus 94 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lL 168 (520)
..+++......++.+..+|.... ..+....+....+.+ ...++|++..+..|...+.....+ ++.+.++
T Consensus 529 ~~v~~~~i~~vv~~~tgip~~~~-~~~~~~~l~~l~~~l-----~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~L 602 (857)
T PRK10865 529 NKVTDAEIAEVLARWTGIPVSRM-LESEREKLLRMEQEL-----HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFL 602 (857)
T ss_pred CccCHHHHHHHHHHHHCCCchhh-hhhHHHHHHHHHHHh-----CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEE
Confidence 35666677777778888887542 222233344444433 445789999999999999886432 2235799
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceE
Q psy17062 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRPHGPCV 246 (520)
Q Consensus 169 l~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~v 246 (520)
|+||+|||||++|+++++.+... +..+++++|..+.... ....+.|.+..+... ...+...+. .....|
T Consensus 603 f~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~-----~~~~LiG~~pgy~g~~~~g~l~~~v~-~~p~~v 673 (857)
T PRK10865 603 FLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKH-----SVSRLVGAPPGYVGYEEGGYLTEAVR-RRPYSV 673 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhh-----hHHHHhCCCCcccccchhHHHHHHHH-hCCCCe
Confidence 99999999999999999988644 4578899998775422 134444543221111 111222221 135689
Q ss_pred EEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCC---------------------chhhhhhhh
Q psy17062 247 LLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDL---------------------PERTLKGKV 297 (520)
Q Consensus 247 LiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~---------------------~~~~l~~~l 297 (520)
|||||++.+....++.|+++|+... ....+.++|++||.... ....+.+.|
T Consensus 674 LllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEL 753 (857)
T PRK10865 674 ILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEF 753 (857)
T ss_pred EEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHH
Confidence 9999999999999999999997531 11235568888886210 011245678
Q ss_pred hccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 298 SSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 298 ~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
.+|+. ..+.|.|++.+++..|+...+... ..++++++++|+.......-.+|-....++..
T Consensus 754 lnRld-~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 754 INRID-EVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHhCC-eeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 89985 349999999999999998777542 45899999999986333222444444444443
No 156
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-13 Score=137.96 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=157.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
....++|+...+.++.+.+.... ....+|||+|++||||-.+|++|.+.-... +-+||.+||..+... .+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA--~s~a~VLI~GESGtGKElvAr~IH~~S~R~---~~PFVavNcaAip~~-----l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA--PSDASVLITGESGTGKELVARAIHQASPRA---KGPFIAVNCAAIPEN-----LL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHHhhCccc---CCCceeeecccCCHH-----HH
Confidence 34579999999999999998853 445569999999999999999999876444 678999999988631 12
Q ss_pred HHHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC
Q psy17062 217 LELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMD 287 (520)
Q Consensus 217 ~~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~ 287 (520)
-+.|+|..... ......-...|.. .....||||||..|...-|.-|+.+|+... .-...+-||++||..
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~-A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d- 286 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQ-ANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD- 286 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeE-cCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC-
Confidence 34466653221 1111111123333 467799999999999999999999997542 123467789888863
Q ss_pred Cch----hhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 288 LPE----RTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 288 ~~~----~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
+.. ..+...+..|+.+-.|++||+.+ +++-.++.+++++. ..+++++++.+... .|.||+|...
T Consensus 287 L~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y--~WPGNVREL~ 364 (464)
T COG2204 287 LEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY--DWPGNVRELE 364 (464)
T ss_pred HHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCChHHHHHH
Confidence 222 23456788899888899999965 88888888777653 67899999998875 6999999999
Q ss_pred HHHHhhhcc
Q psy17062 354 NHYTNEKKS 362 (520)
Q Consensus 354 ~~l~~a~~~ 362 (520)
+.+++++-.
T Consensus 365 N~ver~~il 373 (464)
T COG2204 365 NVVERAVIL 373 (464)
T ss_pred HHHHHHHhc
Confidence 999998763
No 157
>PRK09087 hypothetical protein; Validated
Probab=99.47 E-value=9.2e-13 Score=124.07 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
..+.++|+|++|+|||+|++++++.. +.. +++...+.. +.+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~------~~~--~i~~~~~~~-----------------------~~~~~~----- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS------DAL--LIHPNEIGS-----------------------DAANAA----- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc------CCE--EecHHHcch-----------------------HHHHhh-----
Confidence 34569999999999999999998764 443 444433211 011111
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHHH
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIVQ 321 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il~ 321 (520)
...+|+|||+|.+. ..+..|+++++..... +..+||++...+..+. ...+.+.|||.. ..+.+.+|+.+++.+||+
T Consensus 87 ~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~-g~~ilits~~~p~~~~-~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 AEGPVLIEDIDAGG-FDETGLFHLINSVRQA-GTSLLMTSRLWPSSWN-VKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hcCeEEEECCCCCC-CCHHHHHHHHHHHHhC-CCeEEEECCCChHHhc-cccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 12488999999874 4577788888766432 3344444333333222 235678899832 359999999999999999
Q ss_pred HHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 322 NRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 322 ~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
.+++.. ..++++++++|++. ..|+++.++.++...
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~---~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSR---MERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHH---hhhhHHHHHHHHHHH
Confidence 999865 67999999999998 667888777655544
No 158
>KOG1942|consensus
Probab=99.46 E-value=2e-12 Score=120.12 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=95.9
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC--------CCch-hhhhhhhhccCCcceEEeCCCC
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM--------DLPE-RTLKGKVSSRMGLTRLMFKPYD 312 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~--------~~~~-~~l~~~l~sR~~~~~i~~~~~~ 312 (520)
--|.||||||+|.|+-.....|+..++. .-.-++|+++|+- +... ..+...+..|+-+ |..-+|+
T Consensus 295 lvPGVLFIDEVhMLDiEcFTyL~kalES----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~I--irt~~y~ 368 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIECFTYLHKALES----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI--IRTLPYD 368 (456)
T ss_pred hcCcceEeeehhhhhhHHHHHHHHHhcC----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeE--EeeccCC
Confidence 4689999999999998888888888873 2234566777752 2211 2345677788855 8999999
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCceecccccchhhhhccc
Q psy17062 313 HHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENH 383 (520)
Q Consensus 313 ~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~ 383 (520)
.+++.+||+.+.+.. ..++++++..++.. +....+|.++.++.-+...+....+......+.+++.+..
T Consensus 369 ~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~--gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQVEGLQVEEEALDLLAEI--GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred HHHHHHHHHHHHhhhcceecHHHHHHHHhh--ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 999999999999876 78899999999987 5777899999999876653322222233333444444333
No 159
>KOG0744|consensus
Probab=99.46 E-value=6.3e-13 Score=125.24 Aligned_cols=147 Identities=21% Similarity=0.321 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---CeEEEEEccccCCChHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHcC
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGD---KFVYVEMNALSIPEPKRAYSRILELLLNVDAP-PEQAKAMLERHFTR 240 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~---~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~-~~~~~~~l~~~~~~ 240 (520)
+.+||+||||||||+|++++|+.|.-+... ...++++|+..+ +++++++.-. ....++.+..++..
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL----------FSKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL----------FSKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH----------HHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 569999999999999999999998544221 456889998875 6777666322 23456666666666
Q ss_pred CCCceEEEEcCCccccccCh---------------HHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcce
Q psy17062 241 PHGPCVLLIDELDYLCNKRQ---------------DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTR 305 (520)
Q Consensus 241 ~~~~~vLiiDEid~l~~~~~---------------~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~ 305 (520)
.+....++|||++.|...+. +.|+.-++.+. ...++++++++|-.+. ++.+|..|-++.
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~s----iD~AfVDRADi~- 321 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNLTDS----IDVAFVDRADIV- 321 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccchHHH----HHHHhhhHhhhe-
Confidence 67778889999999976542 23444444443 3567888888876653 455777787654
Q ss_pred EEeCCCCHHHHHHHHHHHHhCC
Q psy17062 306 LMFKPYDHHQLQEIVQNRLKNN 327 (520)
Q Consensus 306 i~~~~~~~~~~~~Il~~~l~~~ 327 (520)
.++.+|+...+.+|++..+..+
T Consensus 322 ~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred eecCCccHHHHHHHHHHHHHHH
Confidence 8899999999999999888765
No 160
>KOG2035|consensus
Probab=99.45 E-value=4.1e-12 Score=117.43 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=132.4
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCe-----------------------E
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKF-----------------------V 197 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~-----------------------~ 197 (520)
+.++++.-..+.... ..+..+++++|||+|.||-|.+.++.+++...+.+.. .
T Consensus 15 l~~~~e~~~~Lksl~----~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 15 LIYHEELANLLKSLS----STGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred cccHHHHHHHHHHhc----ccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 455555544444333 3445578999999999999999999999987533211 0
Q ss_pred EEEEccccCCC-hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC-------CCCceEEEEcCCccccccChHHHHHHHHh
Q psy17062 198 YVEMNALSIPE-PKRAYSRILELLLNVDAPPEQAKAMLERHFTR-------PHGPCVLLIDELDYLCNKRQDVIYNILEY 269 (520)
Q Consensus 198 ~i~v~~~~~~~-~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~-------~~~~~vLiiDEid~l~~~~~~~L~~ll~~ 269 (520)
.++++.++..+ .+-+ +.+.+..+-.. +....|++|-|+|.|..+.|..|...++-
T Consensus 91 HlEitPSDaG~~DRvV-----------------iQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVV-----------------IQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred eEEeChhhcCcccHHH-----------------HHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 11122222111 1111 12222222211 15678999999999999999999999997
Q ss_pred cCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCC
Q psy17062 270 LNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRS 348 (520)
Q Consensus 270 ~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~ 348 (520)
+. +.+-+|..+|... .+.+++.|||-. |++|.|+.+++..++...+++. ..++.+.+..|++. +.||
T Consensus 154 Ys---~~~RlIl~cns~S----riIepIrSRCl~--iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k---S~~n 221 (351)
T KOG2035|consen 154 YS---SNCRLILVCNSTS----RIIEPIRSRCLF--IRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK---SNRN 221 (351)
T ss_pred Hh---cCceEEEEecCcc----cchhHHhhheeE--EeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH---hccc
Confidence 63 3445555567655 356789999966 9999999999999999999877 66778899999998 9999
Q ss_pred HHHHHHHHHhhhc
Q psy17062 349 EIFCANHYTNEKK 361 (520)
Q Consensus 349 ~r~al~~l~~a~~ 361 (520)
+|+|+-+++.+..
T Consensus 222 LRrAllmlE~~~~ 234 (351)
T KOG2035|consen 222 LRRALLMLEAVRV 234 (351)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887654
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=4.2e-12 Score=126.93 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=125.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
..+.++|||+.|.|||+|++++++.+..... +..++++....+. ..++..+... ..+.+++.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~------~~~v~a~~~~------~~~~Fk~~y---- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFT------NDFVKALRDN------EMEKFKEKY---- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHH------HHHHHHHHhh------hHHHHHHhh----
Confidence 4677999999999999999999999877654 5678888766542 2223333211 223333333
Q ss_pred CceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCC-CCchhhhhhhhhccCCcc-eEEeCCCCHHHHHH
Q psy17062 243 GPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTM-DLPERTLKGKVSSRMGLT-RLMFKPYDHHQLQE 318 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~-~~~~~~l~~~l~sR~~~~-~i~~~~~~~~~~~~ 318 (520)
...+|+||+++.+..+. +..|+++++....... .+|.++... ..+. .+.+++.|||... .+.+.+|+.+.+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~-~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRPPKELN-GLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCCchhhc-cccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 56799999999998863 7888888887653333 344444433 3233 3568999999543 68999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 319 IVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 319 Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
||+...+.. ..++++++.+++.. ...++|.+...+.+..
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~---~~~nvReLegaL~~l~ 291 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKR---LDRNVRELEGALNRLD 291 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH---hhccHHHHHHHHHHHH
Confidence 999977765 78999999999998 6667777666665543
No 162
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.44 E-value=2.3e-12 Score=128.49 Aligned_cols=118 Identities=12% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCceEEEEcCCccccccC------------hHHHHHHHHhc-------CCCCCcEEEEEEEcCCCCchhhhhhhhhccCC
Q psy17062 242 HGPCVLLIDELDYLCNKR------------QDVIYNILEYL-------NKPKSRLIILCIANTMDLPERTLKGKVSSRMG 302 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~------------~~~L~~ll~~~-------~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~ 302 (520)
....||||||||.+.... |..|+.+++.. .....++.+||.+.-...-..-+.+.|..||.
T Consensus 248 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 327 (443)
T PRK05201 248 EQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFP 327 (443)
T ss_pred HcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 467899999999998642 45688888753 12346788887654222212236789999997
Q ss_pred cceEEeCCCCHHHHHHHHHH----HHhCC----------CCCCHHHHHHHHHHcCC-----CCCCHHHHHHHHHhhh
Q psy17062 303 LTRLMFKPYDHHQLQEIVQN----RLKNN----------NCFHPDAVQLVARLEPP-----TSRSEIFCANHYTNEK 360 (520)
Q Consensus 303 ~~~i~~~~~~~~~~~~Il~~----~l~~~----------~~~~~~~l~~la~~~~~-----~~G~~r~al~~l~~a~ 360 (520)
+. +.|.+++.+++..||.. .++++ ..|++++++.||+.... ..-.+|....++....
T Consensus 328 i~-v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 328 IR-VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred eE-EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 54 99999999999999942 33332 67899999999998654 2334666666666554
No 163
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.44 E-value=9e-13 Score=139.49 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=150.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
.+..++|++..++++.+.+.... ....+|||+|++||||+++|+++....... +.+++.+||..+... .+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a--~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~~~~-----~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA--ASDLNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAALPES-----LA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh--CCCCcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccCChH-----HH
Confidence 45679999999999999999853 445669999999999999999999875332 578999999987631 11
Q ss_pred HHHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCC
Q psy17062 217 LELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMD 287 (520)
Q Consensus 217 ~~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~ 287 (520)
-..++|..... ......-...|.. .....||||||+.|....|..|+.+++.... ....+-+|++++..-
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~-a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l 333 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFEL-ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL 333 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhh-cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH
Confidence 23444432110 0000000011222 3567899999999999999999999974321 123677888887632
Q ss_pred C---chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 288 L---PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 288 ~---~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
. ....+...+..|+....|.+||+.. +++..++.+++++. ..+++++++.|... .+.||+|...+
T Consensus 334 ~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y--~WPGNvrEL~~ 411 (509)
T PRK05022 334 REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY--DWPGNVRELEH 411 (509)
T ss_pred HHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCCCcHHHHHH
Confidence 1 1123456677888777799999976 67777777665532 56899999999886 69999999999
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
++.+++.
T Consensus 412 ~i~ra~~ 418 (509)
T PRK05022 412 VISRAAL 418 (509)
T ss_pred HHHHHHH
Confidence 9999876
No 164
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.44 E-value=9e-13 Score=140.73 Aligned_cols=212 Identities=13% Similarity=0.156 Sum_probs=149.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
..+.++|.+..+.++.+.+.... ....+|||+|++||||+++|+++.+..... +.+|+.+||..+.. .. +
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a--~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~~~~~--~~---~ 263 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA--RSNSTVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCAALSE--TL---L 263 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh--CcCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecCCCCH--HH---H
Confidence 34578999999999999998864 345569999999999999999999875332 56899999998753 11 1
Q ss_pred HHHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCC
Q psy17062 217 LELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMD 287 (520)
Q Consensus 217 ~~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~ 287 (520)
-..++|..... ......-...+.. ....+||||||+.|....|..|+.+++.... ...++.+|++++..-
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~-a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l 342 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFEL-ADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDL 342 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccc-cCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCH
Confidence 23344432110 0000000001211 3567899999999999999999999974321 012477888776531
Q ss_pred --C-chhhhhhhhhccCCcceEEeCCCC--HHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 288 --L-PERTLKGKVSSRMGLTRLMFKPYD--HHQLQEIVQNRLKNN-------NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 288 --~-~~~~l~~~l~sR~~~~~i~~~~~~--~~~~~~Il~~~l~~~-------~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
. ....+...|..|+....|.+||+. .+++..++.+++... ..+++++++.|... .+.||+|...++
T Consensus 343 ~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~--~WPGNvrEL~~v 420 (534)
T TIGR01817 343 EEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC--KWPGNVRELENC 420 (534)
T ss_pred HHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC--CCCChHHHHHHH
Confidence 1 112345667788877779999997 578888887777643 46899999999886 589999999999
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
+++++.
T Consensus 421 ~~~a~~ 426 (534)
T TIGR01817 421 LERTAT 426 (534)
T ss_pred HHHHHH
Confidence 999875
No 165
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.42 E-value=4.3e-12 Score=126.51 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=82.0
Q ss_pred CCceEEEEcCCccccccC------------hHHHHHHHHhc-------CCCCCcEEEEEEEcCCCCchhhhhhhhhccCC
Q psy17062 242 HGPCVLLIDELDYLCNKR------------QDVIYNILEYL-------NKPKSRLIILCIANTMDLPERTLKGKVSSRMG 302 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~------------~~~L~~ll~~~-------~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~ 302 (520)
....||||||||.+.... |..|+.+++.. .....++.+|+.+.-......-+.+.|..||.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 467899999999998642 55688888753 12345788887664322222236789999997
Q ss_pred cceEEeCCCCHHHHHHHHH----HHHhCC----------CCCCHHHHHHHHHHcCC-----CCCCHHHHHHHHHhhh
Q psy17062 303 LTRLMFKPYDHHQLQEIVQ----NRLKNN----------NCFHPDAVQLVARLEPP-----TSRSEIFCANHYTNEK 360 (520)
Q Consensus 303 ~~~i~~~~~~~~~~~~Il~----~~l~~~----------~~~~~~~l~~la~~~~~-----~~G~~r~al~~l~~a~ 360 (520)
+. +.+.+++.+++..||. ..++++ ..|++++++.||+.... ..-.+|....++....
T Consensus 326 i~-v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IR-VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eE-EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 54 9999999999999983 222222 67899999999998653 2334666666665543
No 166
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-12 Score=128.97 Aligned_cols=210 Identities=14% Similarity=0.166 Sum_probs=146.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
.+.++|-+..+.++.+.+.. -...+.++||+|++||||+.+|+.+....... ...++|.+||..+...-...
T Consensus 77 ~~~LIG~~~~~~~~~eqik~--~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa~~~en~~~~---- 148 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA--YAPSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCAAYSENLQEA---- 148 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh--hCCCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHHHhCcCHHHH----
Confidence 34588999999999998887 44566779999999999999999999443331 26799999999887643332
Q ss_pred HHHhcCCCChH-HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCC
Q psy17062 218 ELLLNVDAPPE-QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDL 288 (520)
Q Consensus 218 ~~l~g~~~~~~-~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~ 288 (520)
.|+|.....- .....-...|.. .....||+|||+.|....|..|+.+++... .....|.+|++|+. .
T Consensus 149 -eLFG~~kGaftGa~~~k~Glfe~-A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~ 224 (403)
T COG1221 149 -ELFGHEKGAFTGAQGGKAGLFEQ-ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--D 224 (403)
T ss_pred -HHhccccceeecccCCcCchhee-cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--C
Confidence 2444321100 000001112222 367799999999999999999999998632 13456888887764 3
Q ss_pred chhhhhh--hhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 289 PERTLKG--KVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 289 ~~~~l~~--~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
+...+.. .|.+|+.+..|++||+.+ +++..++++.+..+ ....++++..+... .+.||+|...+.+
T Consensus 225 l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y--~~pGNirELkN~V 302 (403)
T COG1221 225 LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY--DWPGNIRELKNLV 302 (403)
T ss_pred HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCCCcHHHHHHHH
Confidence 3333444 677767667799999966 67777777766654 33345677766654 4799999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
++++.
T Consensus 303 e~~~~ 307 (403)
T COG1221 303 ERAVA 307 (403)
T ss_pred HHHHH
Confidence 99875
No 167
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.42 E-value=5.7e-12 Score=131.55 Aligned_cols=209 Identities=16% Similarity=0.263 Sum_probs=133.3
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE-ccccCCChH---HHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQST-TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM-NALSIPEPK---RAYS 214 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~-~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v-~~~~~~~~~---~~~~ 214 (520)
.|..+.+.+++|..||........ ...+||+||+||||||+++.+|+++ ++.+++- +........ .-+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEecCCCCcccccccccccc
Confidence 377788999999999998765543 5678899999999999999999999 7777654 333211100 0000
Q ss_pred HHHHHHhcCCCChHHHHHHHHHH-HcC-------------CCCceEEEEcCCccccccChHHHHHHHHhc-CCCCC-cEE
Q psy17062 215 RILELLLNVDAPPEQAKAMLERH-FTR-------------PHGPCVLLIDELDYLCNKRQDVIYNILEYL-NKPKS-RLI 278 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~-~~~-------------~~~~~vLiiDEid~l~~~~~~~L~~ll~~~-~~~~~-~v~ 278 (520)
...... ....+. ...+... +.. .....||+|||+..++......|..+|..+ ....+ +++
T Consensus 94 s~~~~~-~~f~sq---~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV 169 (519)
T PF03215_consen 94 SDFNKF-DEFLSQ---SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLV 169 (519)
T ss_pred cccccc-ccccch---hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEE
Confidence 000000 000000 0111111 000 035789999999988877667777777533 33445 666
Q ss_pred EEEEE-cCCC--C--------chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-------CCCC--HHHHHHH
Q psy17062 279 ILCIA-NTMD--L--------PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-------NCFH--PDAVQLV 338 (520)
Q Consensus 279 vI~~t-n~~~--~--------~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-------~~~~--~~~l~~l 338 (520)
+|.+- .... . ....+.+.+.....+..|.|.|....-+...|...+... .... ...++.|
T Consensus 170 ~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I 249 (519)
T PF03215_consen 170 FIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSI 249 (519)
T ss_pred EEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHH
Confidence 66541 1100 0 112345667778888889999999999888888877654 1222 3358888
Q ss_pred HHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 339 ARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 339 a~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.. ..||+|.||+.|+..+.
T Consensus 250 ~~~---s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 250 AES---SNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHh---cCchHHHHHHHHHHHhc
Confidence 775 78999999999998876
No 168
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.1e-11 Score=123.26 Aligned_cols=184 Identities=10% Similarity=0.186 Sum_probs=125.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--CeEEEEEccccCCChHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD--KFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~i 216 (520)
+.++|++...+.+...+.. +..+..+||+||+|+|||++|+.+++.+.+.... ...+..+...+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~---~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~----------- 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK---NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN----------- 69 (313)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-----------
Confidence 4578998888888777743 3445667999999999999999999988543211 11222332211
Q ss_pred HHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 217 LELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 217 ~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
|.....+++.+.+....... ....|+|||++|.+....++.|+..|+.+ ..++++|.+++..+ .+.
T Consensus 70 -----~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep---p~~t~~il~~~~~~----~ll 137 (313)
T PRK05564 70 -----KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP---PKGVFIILLCENLE----QIL 137 (313)
T ss_pred -----CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC---CCCeEEEEEeCChH----hCc
Confidence 22222333333333222222 57789999999999998899999999854 45566666665443 356
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
+.+.|||.. +.|++++.+++..++...+. .++++.++.++.. +.|+..+|...+
T Consensus 138 ~TI~SRc~~--~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~~~---~~g~~~~a~~~~ 191 (313)
T PRK05564 138 DTIKSRCQI--YKLNRLSKEEIEKFISYKYN---DIKEEEKKSAIAF---SDGIPGKVEKFI 191 (313)
T ss_pred HHHHhhcee--eeCCCcCHHHHHHHHHHHhc---CCCHHHHHHHHHH---cCCCHHHHHHHh
Confidence 788999965 99999999999998887654 3577778888776 556666665443
No 169
>KOG1970|consensus
Probab=99.41 E-value=1.4e-11 Score=123.94 Aligned_cols=215 Identities=14% Similarity=0.249 Sum_probs=133.0
Q ss_pred HhhccCCCCCC---CCCchHHHHHHHHHHHHHHhh---cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 129 RESLHLSRVPE---SLPCREAEFQSIHRFLLSKIS---QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 129 ~~~l~~~~~p~---~l~gr~~ei~~l~~~L~~~~~---~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
.+.+-..+.|. .|.-+.+.+.+|..||..... .-....+||+||+||||||+++.+++++ ++.+++-.
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel------g~~~~Ew~ 142 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL------GYQLIEWS 142 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh------Cceeeeec
Confidence 34444556664 477788999999999993222 1234579999999999999999999999 77776533
Q ss_pred -cccCCCh------HHHHH-HHHHHHhcCCCChHHHHHHHHHH-----Hc----CC-CCceEEEEcCCcccccc-ChHHH
Q psy17062 203 -ALSIPEP------KRAYS-RILELLLNVDAPPEQAKAMLERH-----FT----RP-HGPCVLLIDELDYLCNK-RQDVI 263 (520)
Q Consensus 203 -~~~~~~~------~~~~~-~i~~~l~g~~~~~~~~~~~l~~~-----~~----~~-~~~~vLiiDEid~l~~~-~~~~L 263 (520)
...+..+ ..... .+.++|. ..+..+... +. .. ..+.+|+|||+...+.. +...+
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~-------~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f 215 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLA-------VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETF 215 (634)
T ss_pred CCccccccccccccchhcccchhhHHH-------HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHH
Confidence 3222111 00000 0111110 011111111 11 11 56779999999887765 55666
Q ss_pred HHHHHhc-CCCCCcEEEEEEEcCCC----CchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCC------
Q psy17062 264 YNILEYL-NKPKSRLIILCIANTMD----LPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFH------ 331 (520)
Q Consensus 264 ~~ll~~~-~~~~~~v~vI~~tn~~~----~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~------ 331 (520)
..+|..+ .....++ ||++|+... ..++.+...+..+..+..|.|.|....-++..|...|... ...+
T Consensus 216 ~evL~~y~s~g~~Pl-If~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPL-IFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcE-EEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 6666644 2334454 445554432 2233334455566666789999999999999999988765 1122
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 332 PDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 332 ~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
...++.++. +..||+|.|++.|+..+
T Consensus 295 ~~~v~~i~~---~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQ---GSGGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHH---hcCccHHHHHhHhhhhc
Confidence 344455544 49999999999999874
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.5e-11 Score=121.35 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=129.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------CeEEEEEccccC
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------KFVYVEMNALSI 206 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------~~~~i~v~~~~~ 206 (520)
+.++|++...+.+...+.. +..+..+||+||.|+||+++|.++++.+...... ...++++.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 4578999998888888764 3456789999999999999999999998764310 111222221100
Q ss_pred CChHHHHHHHHHHHhc------CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcE
Q psy17062 207 PEPKRAYSRILELLLN------VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g------~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v 277 (520)
......-..... ..| .....+++. .+...+... ....|+|||++|.|.....+.|+..|+.+. +.
T Consensus 81 ~~g~~~~~~~~~-~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp----~~ 154 (314)
T PRK07399 81 HQGKLITASEAE-EAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG----NG 154 (314)
T ss_pred ccccccchhhhh-hccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC----CC
Confidence 000000000000 001 011122222 233333333 678899999999999999999999999763 34
Q ss_pred EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
++|.+++..+ .+.+.+.|||.. +.|++++.+++.++|....... . .+.....++.. ..|+++.|++.+.
T Consensus 155 ~fILi~~~~~----~Ll~TI~SRcq~--i~f~~l~~~~~~~~L~~~~~~~-~-~~~~~~~l~~~---a~Gs~~~al~~l~ 223 (314)
T PRK07399 155 TLILIAPSPE----SLLPTIVSRCQI--IPFYRLSDEQLEQVLKRLGDEE-I-LNINFPELLAL---AQGSPGAAIANIE 223 (314)
T ss_pred eEEEEECChH----hCcHHHHhhceE--EecCCCCHHHHHHHHHHhhccc-c-chhHHHHHHHH---cCCCHHHHHHHHH
Confidence 5666777553 467789999965 9999999999999999875421 1 12224566665 7899999988776
Q ss_pred hh
Q psy17062 358 NE 359 (520)
Q Consensus 358 ~a 359 (520)
..
T Consensus 224 ~~ 225 (314)
T PRK07399 224 QL 225 (314)
T ss_pred HH
Confidence 43
No 171
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.41 E-value=1.5e-12 Score=123.87 Aligned_cols=198 Identities=19% Similarity=0.304 Sum_probs=108.3
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH----
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI---- 216 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i---- 216 (520)
|+||+++++.|.+++.. +....++|+||.|+|||++++.+.+.+... +...+++.+....... .+..+
T Consensus 1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~---~~~~~y~~~~~~~~~~-~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINELKEK---GYKVVYIDFLEESNES-SLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHHCT-----EECCCHHCCTTBSHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHHhhhc---CCcEEEEecccchhhh-HHHHHHHHH
Confidence 57999999999988864 345789999999999999999999987433 3344555554433221 11111
Q ss_pred ------HHHHh----cCCC---------ChHHHHHHHHHHHcCCCCceEEEEcCCcccc-c--cChHH---HHHHHHhcC
Q psy17062 217 ------LELLL----NVDA---------PPEQAKAMLERHFTRPHGPCVLLIDELDYLC-N--KRQDV---IYNILEYLN 271 (520)
Q Consensus 217 ------~~~l~----g~~~---------~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~-~--~~~~~---L~~ll~~~~ 271 (520)
...+. +... ........+...+.......||+|||++.+. . ..... |..+++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11111 1000 1112223333333333344999999999999 2 22343 444444321
Q ss_pred CCCCcEEEEEEEcCCCCchhh--hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHcCCCCC
Q psy17062 272 KPKSRLIILCIANTMDLPERT--LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNC--FHPDAVQLVARLEPPTSR 347 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~--l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~--~~~~~l~~la~~~~~~~G 347 (520)
...++.+|.++......... -...+..|+.. +.+++++.++..+++...+..... ++++.++.+... +.|
T Consensus 153 -~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~gG 226 (234)
T PF01637_consen 153 -SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH--IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSL---TGG 226 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---E--EEE----HHHHHHHHHHHHHCC------HHHHHHHHHH---HTT
T ss_pred -ccCCceEEEECCchHHHHHhhcccCccccccce--EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH---hCC
Confidence 24555555555543222210 12346677754 999999999999999998876532 489999999998 566
Q ss_pred CHHHH
Q psy17062 348 SEIFC 352 (520)
Q Consensus 348 ~~r~a 352 (520)
.++..
T Consensus 227 ~P~~l 231 (234)
T PF01637_consen 227 NPRYL 231 (234)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 66553
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=2.6e-11 Score=110.14 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=140.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.|+|-+.+.+.+.+.....+.+.+.+++||+|..|||||++++++..++... +..+|+|+-.++.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~---glrLVEV~k~dl~~----------- 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE---GLRLVEVDKEDLAT----------- 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc---CCeEEEEcHHHHhh-----------
Confidence 4789999999999999998889999999999999999999999999999877 78899998776542
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc-ChHHHHHHHHhc-CCCCCcEEEEEEEcCCCCchhhhh---
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK-RQDVIYNILEYL-NKPKSRLIILCIANTMDLPERTLK--- 294 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~-~~~~L~~ll~~~-~~~~~~v~vI~~tn~~~~~~~~l~--- 294 (520)
.-.+...+......-|||+|++-.=..+ .-..|..+|+.. .....+|++-+++|+..++...+.
T Consensus 127 -----------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 127 -----------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred -----------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 1122233333357889999998554332 345678888754 445678999999998655432111
Q ss_pred ---------------hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCC--CCCCHHHHHHHH
Q psy17062 295 ---------------GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPP--TSRSEIFCANHY 356 (520)
Q Consensus 295 ---------------~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~--~~G~~r~al~~l 356 (520)
-.+..||+.. +.|.+++.++...|+..++++. ..++++.++.=|...+- -+.+-|.|-..+
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLw-L~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~ 274 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLW-LSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFI 274 (287)
T ss_pred CcccccChhHHHHHhhchhhhccee-ecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHH
Confidence 1366799876 9999999999999999999876 44556555544433222 223455555555
Q ss_pred Hhhh
Q psy17062 357 TNEK 360 (520)
Q Consensus 357 ~~a~ 360 (520)
+..+
T Consensus 275 ~~~~ 278 (287)
T COG2607 275 RDLA 278 (287)
T ss_pred HHHH
Confidence 5443
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=3.4e-12 Score=124.26 Aligned_cols=179 Identities=19% Similarity=0.207 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
+...+....+...+.. .+++||.|+||||||++++.+++.+ +.+++.+++....++.+ +.
T Consensus 48 ~f~~~~~~~vl~~l~~------~~~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~D--------li 107 (327)
T TIGR01650 48 LFDKATTKAICAGFAY------DRRVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRID--------LV 107 (327)
T ss_pred cCCHHHHHHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhh--------cC
Confidence 3444444445444432 3679999999999999999999999 89999999988776433 33
Q ss_pred cCCCCh----HHHHHHHHHHHcCC-CCceEEEEcCCccccccChHHHHHHHHhc------C-----CCCCcEEEEEEEcC
Q psy17062 222 NVDAPP----EQAKAMLERHFTRP-HGPCVLLIDELDYLCNKRQDVIYNILEYL------N-----KPKSRLIILCIANT 285 (520)
Q Consensus 222 g~~~~~----~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~------~-----~~~~~v~vI~~tn~ 285 (520)
|..... ..........+..+ ..+.+|++||+|.+.++.+..|..+|+.. . ..+..+.+|++.|+
T Consensus 108 G~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 108 GKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred CCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 432100 00011111112222 46789999999999999999999999831 1 13447889999998
Q ss_pred CCCch--------hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q psy17062 286 MDLPE--------RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN-CFHPDAVQLVARL 341 (520)
Q Consensus 286 ~~~~~--------~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~-~~~~~~l~~la~~ 341 (520)
.+.-+ ..++.++..||.+ .+.+..|+.++-.+|+........ ..++..++++.+.
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lDRF~i-~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMDRWSI-VTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHhheee-EeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 65211 2357789999964 268999999999999987754321 1124455555443
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=7.3e-12 Score=109.67 Aligned_cols=148 Identities=22% Similarity=0.286 Sum_probs=96.0
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
+|++.++..+...+.. ....+++|+|++|+|||++++.+++.+... +..++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 3677777777776643 355789999999999999999999998643 5678888887654322221111000
Q ss_pred cCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCC---CCcEEEEEEEcCCCCchhhhhhhhh
Q psy17062 222 NVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKP---KSRLIILCIANTMDLPERTLKGKVS 298 (520)
Q Consensus 222 g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~---~~~v~vI~~tn~~~~~~~~l~~~l~ 298 (520)
.............+.+|+|||++.+.......+..++...... ..++.+|++++.... ..+...+.
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~ 140 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALY 140 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc--CCcChhHH
Confidence 0011111222257899999999998665566677777655322 367888888887654 12456777
Q ss_pred ccCCcceEEeCC
Q psy17062 299 SRMGLTRLMFKP 310 (520)
Q Consensus 299 sR~~~~~i~~~~ 310 (520)
+||. .++.+++
T Consensus 141 ~r~~-~~i~~~~ 151 (151)
T cd00009 141 DRLD-IRIVIPL 151 (151)
T ss_pred hhhc-cEeecCC
Confidence 8885 3466653
No 175
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=2.1e-12 Score=130.66 Aligned_cols=214 Identities=15% Similarity=0.154 Sum_probs=156.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
.+..+.++|...++.++.+..... .....+|||.|.+||||-.+|+++.+.-... +-+||.+||..+.. .++
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~--A~tdstVLi~GESGTGKElfA~~IH~~S~R~---~~PFIaiNCaAiPe--~Ll- 312 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI--AKTDSTVLILGESGTGKELFARAIHNLSPRA---NGPFIAINCAAIPE--TLL- 312 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh--cCCCCcEEEecCCCccHHHHHHHHHhcCccc---CCCeEEEecccCCH--HHH-
Confidence 456778999999999999888874 4556679999999999999999999876554 77999999998863 222
Q ss_pred HHHHHHhcCCCChHH-HHHH-HHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEc
Q psy17062 215 RILELLLNVDAPPEQ-AKAM-LERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIAN 284 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~-~~~~-l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn 284 (520)
-+.|+|.....-. +... -...|.. ....-||||||..|...-|.-|+.+|+.-. .....|-||++||
T Consensus 313 --ESELFGye~GAFTGA~~~GK~GlfE~-A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 313 --ESELFGYEKGAFTGASKGGKPGLFEL-ANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred --HHHHhCcCCccccccccCCCCcceee-ccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccC
Confidence 2455554321100 0000 0112222 356789999999999999999999997532 2345788999998
Q ss_pred CCC--Cc-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 285 TMD--LP-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 285 ~~~--~~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
..- +. +..+...+..|+++-.|++||+.+ +++..+..+.+.+. ..+++++++.+.+. .|+||+|.
T Consensus 390 ~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y--~WPGNVRE 467 (560)
T COG3829 390 RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY--DWPGNVRE 467 (560)
T ss_pred cCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC--CCCchHHH
Confidence 731 11 123456678899888899999955 77777777777643 45899999998876 69999999
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
.-+++.++.-
T Consensus 468 LeNviER~v~ 477 (560)
T COG3829 468 LENVIERAVN 477 (560)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 176
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.39 E-value=2.6e-12 Score=135.97 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=146.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
....+.++|.+..+.++.+.+..... ....+||+|++||||+++|+++....... ..+|+.+||..+.. . .
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~--~~~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca~~~~-~-~-- 270 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM--LDAPLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCASIPD-D-V-- 270 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC--CCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccccCCH-H-H--
Confidence 45566899999999999999887544 34559999999999999999987654222 56899999998763 1 1
Q ss_pred HHHHHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcC
Q psy17062 215 RILELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANT 285 (520)
Q Consensus 215 ~i~~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~ 285 (520)
+-..++|..... ....+.-...|.. .....||||||+.|....|..|+.+++... ....++.+|++++.
T Consensus 271 -~e~elFG~~~~~~~~~~~~~~g~~e~-a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 271 -VESELFGHAPGAYPNALEGKKGFFEQ-ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred -HHHHhcCCCCCCcCCcccCCCChhhh-cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 123344432100 0000000112322 246789999999999999999999997431 11235677877665
Q ss_pred CC--Cc-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 286 MD--LP-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 286 ~~--~~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.- +. ...+...+..|+....|.+||+.+ +++..++..++... ..+++++++.|... .++||++..
T Consensus 349 ~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y--~WPGNvreL 426 (520)
T PRK10820 349 NLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY--GWPGNVRQL 426 (520)
T ss_pred CHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC--CCCCHHHHH
Confidence 31 11 122445677888777899999976 56777666665432 46899999998775 699999999
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
.+++.++..
T Consensus 427 ~nvl~~a~~ 435 (520)
T PRK10820 427 KNAIYRALT 435 (520)
T ss_pred HHHHHHHHH
Confidence 999998876
No 177
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=1.9e-12 Score=129.16 Aligned_cols=211 Identities=15% Similarity=0.168 Sum_probs=152.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
...++|+...+.++.+.+.-. .....+|||.|.+||||-.+|++|.+.-... .-++|++||..+.. .+ +-
T Consensus 222 ~~~iIG~S~am~~ll~~i~~V--A~Sd~tVLi~GETGtGKElvAraIH~~S~R~---~kPfV~~NCAAlPe--sL---lE 291 (550)
T COG3604 222 VGGIIGRSPAMRQLLKEIEVV--AKSDSTVLIRGETGTGKELVARAIHQLSPRR---DKPFVKLNCAALPE--SL---LE 291 (550)
T ss_pred cccceecCHHHHHHHHHHHHH--hcCCCeEEEecCCCccHHHHHHHHHhhCccc---CCCceeeeccccch--HH---HH
Confidence 346899999999999999875 3455669999999999999999999876544 67899999998863 22 22
Q ss_pred HHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC
Q psy17062 218 ELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL 288 (520)
Q Consensus 218 ~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~ 288 (520)
+.|+|..... ......-...|+. ..+.-||+|||..|.-.-|.-|+..|..... ....|-||++||.. +
T Consensus 292 SELFGHeKGAFTGA~~~r~GrFEl-AdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD-L 369 (550)
T COG3604 292 SELFGHEKGAFTGAINTRRGRFEL-ADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD-L 369 (550)
T ss_pred HHHhcccccccccchhccCcceee-cCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh-H
Confidence 5566653221 0111111112222 4677999999999999999999999975421 13468899999972 2
Q ss_pred ch----hhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 289 PE----RTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 289 ~~----~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
.. ..+...+..|+.+-.|.+||+.+ +++.-+..+++++. ..+++++++.|... .+.||+|...+
T Consensus 370 ~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y--~wPGNVRELen 447 (550)
T COG3604 370 EEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY--EWPGNVRELEN 447 (550)
T ss_pred HHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC--CCCCcHHHHHH
Confidence 22 22345566788777788999865 55655555555543 67899999999887 69999999999
Q ss_pred HHHhhhcc
Q psy17062 355 HYTNEKKS 362 (520)
Q Consensus 355 ~l~~a~~~ 362 (520)
.+.+++-.
T Consensus 448 ~veRavll 455 (550)
T COG3604 448 VVERAVLL 455 (550)
T ss_pred HHHHHHHH
Confidence 99999874
No 178
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.38 E-value=6.1e-12 Score=138.19 Aligned_cols=211 Identities=12% Similarity=0.139 Sum_probs=147.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
....++|++..+..+.+.+.... ....+|||+|++|||||++|+++....... +.+++.++|..+.. ..+
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a--~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~~~~~-~~~---- 443 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA--QSDSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCAAMPA-GLL---- 443 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh--CCCCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecccCCh-hHh----
Confidence 34469999999999998888753 344569999999999999999999865332 67899999998742 111
Q ss_pred HHHHhcCCCCh-HH-HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCC
Q psy17062 217 LELLLNVDAPP-EQ-AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTM 286 (520)
Q Consensus 217 ~~~l~g~~~~~-~~-~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~ 286 (520)
-..++|..... .. ....+ ..+.. ....+||||||+.|....|..|..+++.... ...++.+|++++..
T Consensus 444 ~~~lfg~~~~~~~g~~~~~~-g~le~-a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 444 ESDLFGHERGAFTGASAQRI-GRFEL-ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hhhhcCcccccccccccchh-hHHHh-cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 12333432110 00 00111 12222 3567999999999999999999999974321 12467788877653
Q ss_pred C--C-chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 287 D--L-PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 287 ~--~-~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
- . ....+...+..|+....|.+||+.. +++..+++.++.+. ..+++++++.|... .+.||++...
T Consensus 522 l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y--~WPGNvrEL~ 599 (686)
T PRK15429 522 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM--EWPGNVRELE 599 (686)
T ss_pred HHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--CCCCcHHHHH
Confidence 1 1 1123445577788777799999966 67777777666543 35899999999876 6999999999
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
+++++++.
T Consensus 600 ~~i~~a~~ 607 (686)
T PRK15429 600 NVIERAVL 607 (686)
T ss_pred HHHHHHHH
Confidence 99999876
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=2.4e-11 Score=120.59 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=115.6
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh---------------cCCC
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL---------------NVDA 225 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~---------------g~~~ 225 (520)
++.+..+||+||+|+|||++|+.+++.+......+. -.|..+.+ +..+. +...
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~----~~Cg~C~s--------C~~~~~g~HPD~~~i~~~~~~~~i 86 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG----GACGSCKG--------CQLLRAGSHPDNFVLEPEEADKTI 86 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCHH--------HHHHhcCCCCCEEEEeccCCCCCC
Confidence 445567999999999999999999999975421100 01222211 00000 0112
Q ss_pred ChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCc
Q psy17062 226 PPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGL 303 (520)
Q Consensus 226 ~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~ 303 (520)
..+++.+......... +...|+|||++|.|.....+.|+..|+.+ ..++++|.+|+..+ .+.+.+.|||..
T Consensus 87 ~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---p~~~~fiL~t~~~~----~ll~TI~SRc~~ 159 (328)
T PRK05707 87 KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP---SGDTVLLLISHQPS----RLLPTIKSRCQQ 159 (328)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC---CCCeEEEEEECChh----hCcHHHHhhcee
Confidence 3334444333332222 56788999999999999999999999965 45777888887765 356789999976
Q ss_pred ceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 304 TRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 304 ~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+.|++++.++..+.|..... ..+++....++.. +.|.+..|+.++.
T Consensus 160 --~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~l---a~Gsp~~A~~l~~ 205 (328)
T PRK05707 160 --QACPLPSNEESLQWLQQALP---ESDERERIELLTL---AGGSPLRALQLHE 205 (328)
T ss_pred --eeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHH---cCCCHHHHHHHHC
Confidence 99999999999999887642 2356666666776 7788888877654
No 180
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.36 E-value=1e-11 Score=130.35 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=147.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHH
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSR 215 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~ 215 (520)
+..+.++|.+..+.++.+.+..... ...+|||+|++||||+.+|+.+.+..... +.+|+.+||..+.. ..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~--~~~pVLI~GE~GTGKe~lA~~IH~~S~r~---~~pfv~inC~~l~e--~l--- 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR--SDATVLILGESGTGKELVAQAIHQLSGRR---DFPFVAINCGAIAE--SL--- 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCcCHHHHHHHHHHhcCcC---CCCEEEeccccCCh--hH---
Confidence 4455689999999999999887533 44569999999999999999999764322 67899999998753 11
Q ss_pred HHHHHhcCCCChH-HHH-HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcC
Q psy17062 216 ILELLLNVDAPPE-QAK-AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANT 285 (520)
Q Consensus 216 i~~~l~g~~~~~~-~~~-~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~ 285 (520)
+-+.++|.....- ... ..-...|.. .....||||||+.|....|..|+.+|+.... ....+-+|++++.
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~-A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEA-AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHHHhcCCcccccccccccccccchhh-cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 2234445321100 000 000112222 3567899999999999999999999974321 1124567877765
Q ss_pred CC--C-chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC-----CCCCHHHHHH-------HHHHcCCCCCC
Q psy17062 286 MD--L-PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN-----NCFHPDAVQL-------VARLEPPTSRS 348 (520)
Q Consensus 286 ~~--~-~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~-----~~~~~~~l~~-------la~~~~~~~G~ 348 (520)
.- . ....+...+..|+....|.+||+.+ +++..++.+++... ..+++++++. |... .++||
T Consensus 358 ~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y--~WPGN 435 (526)
T TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRY--PWPGN 435 (526)
T ss_pred CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhC--CCCch
Confidence 32 1 1123455677788777799999976 78888888877654 3478888877 5443 59999
Q ss_pred HHHHHHHHHhhhc
Q psy17062 349 EIFCANHYTNEKK 361 (520)
Q Consensus 349 ~r~al~~l~~a~~ 361 (520)
+|...+++++++.
T Consensus 436 vrEL~nvier~~i 448 (526)
T TIGR02329 436 VRELRNLVERLAL 448 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 181
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.36 E-value=3.4e-12 Score=139.88 Aligned_cols=158 Identities=15% Similarity=0.230 Sum_probs=115.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH-HHHHHHHHcCC-
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA-KAMLERHFTRP- 241 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~-~~~l~~~~~~~- 241 (520)
.-.+||.||..+|||+++..+++.. +..+|.+|-.+.++ +..+.|..++.+.. ...-..++..+
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTd--------lqeYiGTyvTdd~G~lsFkEGvLVeAl 953 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTD--------LQEYIGTYVTDDDGSLSFKEGVLVEAL 953 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccch--------HHHHhhceeecCCCceeeehhHHHHHH
Confidence 3459999999999999999999998 89999999999987 45555543322111 11112223333
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcC-----------CCCCcEEEEEEEcCCCCch--hhhhhhhhccCCcceEEe
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLN-----------KPKSRLIILCIANTMDLPE--RTLKGKVSSRMGLTRLMF 308 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~-----------~~~~~v~vI~~tn~~~~~~--~~l~~~l~sR~~~~~i~~ 308 (520)
+++-+|++||++.......++|..+|+... ..+..+.+.++-|++..-. ..+.++|++||-- ++|
T Consensus 954 R~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE--~hF 1031 (4600)
T COG5271 954 RRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE--MHF 1031 (4600)
T ss_pred hcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh--hhc
Confidence 577899999999999888899999997421 2456777888778765432 3467899999943 999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy17062 309 KPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARL 341 (520)
Q Consensus 309 ~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~ 341 (520)
.....+++..||+.+|+- .+.....|...
T Consensus 1032 ddipedEle~ILh~rc~i----apSyakKiVeV 1060 (4600)
T COG5271 1032 DDIPEDELEEILHGRCEI----APSYAKKIVEV 1060 (4600)
T ss_pred ccCcHHHHHHHHhccCcc----CHHHHHHHHHH
Confidence 999999999999998874 55555555554
No 182
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.36 E-value=7.8e-12 Score=125.43 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=123.2
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCe-EEEEcCCCCcHHHHHHHHHHHHHHHhC------------------CCeEEEEE
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGC-MYISGVPGTGKTATVHAVMRKLKQEIG------------------DKFVYVEM 201 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~-lLl~G~~GtGKT~la~~la~~l~~~~~------------------~~~~~i~v 201 (520)
+++.+....++..+.... +...+ +||+||||+|||++|.++++.+..... ....++++
T Consensus 3 ~~~~~~~~~~l~~~~~~~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 3 LVPWQEAVKRLLVQALES---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred cccchhHHHHHHHHHHhc---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 556677777777777642 23344 999999999999999999999974431 02467778
Q ss_pred ccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 202 NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+..+..... .....+. .+...+... ....|+||||+|.|....++.|+..++.+ ..+..
T Consensus 80 ~~s~~~~~~--------------i~~~~vr-~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep---~~~~~ 141 (325)
T COG0470 80 NPSDLRKID--------------IIVEQVR-ELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP---PKNTR 141 (325)
T ss_pred cccccCCCc--------------chHHHHH-HHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC---CCCeE
Confidence 777654311 0011111 122222221 56789999999999999999999999855 56777
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
+|+++|... .+.+.+.|||.. +.|++++........+ +..+..++.. ..||+|.+++.++.
T Consensus 142 ~il~~n~~~----~il~tI~SRc~~--i~f~~~~~~~~i~~~e----------~~~l~~i~~~---~~gd~r~~i~~lq~ 202 (325)
T COG0470 142 FILITNDPS----KILPTIRSRCQR--IRFKPPSRLEAIAWLE----------DQGLEEIAAV---AEGDARKAINPLQA 202 (325)
T ss_pred EEEEcCChh----hccchhhhccee--eecCCchHHHHHHHhh----------ccchhHHHHH---HHHHHHcCCCHHHH
Confidence 888888544 245689999965 9999855444333332 5556666665 77888888888887
Q ss_pred hhc
Q psy17062 359 EKK 361 (520)
Q Consensus 359 a~~ 361 (520)
.+.
T Consensus 203 ~~~ 205 (325)
T COG0470 203 LAA 205 (325)
T ss_pred HHH
Confidence 765
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=2.9e-11 Score=120.73 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=119.4
Q ss_pred CCCCc-hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPC-REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~g-r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
+.++| ++..++.+...+. .+..+..+||+||+|+||+++|+.+++.+......+. ..|..+.+ +
T Consensus 5 ~~i~~~q~~~~~~L~~~~~---~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~----~~cg~C~~--------c 69 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIA---KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV----EPCGTCTN--------C 69 (329)
T ss_pred HHHHhhHHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCcCHH--------H
Confidence 34566 6667776666654 3345566799999999999999999999865321000 01111110 0
Q ss_pred HHHh-------------cCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 218 ELLL-------------NVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 218 ~~l~-------------g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
..+. |.....+++.+.+...-... +...|+||||+|.+....++.|+..|+.+ ...+++|.+
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP---p~~~~~Il~ 146 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP---SGGTTAILL 146 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC---CCCceEEEE
Confidence 0000 11122223333332222111 56789999999999998899999999854 456777777
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
++... .+.+.+.|||.. ++|.+++.+++.++|... .++++....++.. .|++..|+.++.
T Consensus 147 t~~~~----~ll~TIrSRc~~--i~~~~~~~~~~~~~L~~~-----gi~~~~~~~l~~~----~g~~~~A~~l~~ 206 (329)
T PRK08058 147 TENKH----QILPTILSRCQV--VEFRPLPPESLIQRLQEE-----GISESLATLLAGL----TNSVEEALALSE 206 (329)
T ss_pred eCChH----hCcHHHHhhcee--eeCCCCCHHHHHHHHHHc-----CCChHHHHHHHHH----cCCHHHHHHHhc
Confidence 76543 356789999965 999999999998888642 2455655566553 477888877665
No 184
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.33 E-value=7.3e-12 Score=131.30 Aligned_cols=215 Identities=15% Similarity=0.158 Sum_probs=144.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-----HhCCCeEEEEEccccCCChHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ-----EIGDKFVYVEMNALSIPEPKR 211 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~-----~~~~~~~~i~v~~~~~~~~~~ 211 (520)
..+.++|.+..+.++.+.+..... ...+|||+|++||||+.+|+++.+.+.. ....+.+|+.+||..+.. .
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~--s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e--~ 292 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYAR--SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE--S 292 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh--h
Confidence 345689999999999999887533 4556999999999999999999987221 001167899999998763 1
Q ss_pred HHHHHHHHHhcCCCCh-HHHHH-HHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEE
Q psy17062 212 AYSRILELLLNVDAPP-EQAKA-MLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILC 281 (520)
Q Consensus 212 ~~~~i~~~l~g~~~~~-~~~~~-~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~ 281 (520)
. +-..++|..... ..... .-...|.. .....||||||+.|....|..|+.+++... ....++.+|+
T Consensus 293 l---leseLFG~~~gaftga~~~~~~Gl~e~-A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIa 368 (538)
T PRK15424 293 L---LEAELFGYEEGAFTGSRRGGRAGLFEI-AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 368 (538)
T ss_pred h---HHHHhcCCccccccCccccccCCchhc-cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEE
Confidence 1 223444532110 00000 00012222 356789999999999999999999997432 1123567888
Q ss_pred EEcCCCC--c-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC-----CCCCHHHHH-------HHHHHcCC
Q psy17062 282 IANTMDL--P-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN-----NCFHPDAVQ-------LVARLEPP 344 (520)
Q Consensus 282 ~tn~~~~--~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~-----~~~~~~~l~-------~la~~~~~ 344 (520)
+++..-. . ...+...+..|+....|.+||+.+ +++..++.+++.+. ..++++++. .|.. ..
T Consensus 369 at~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~--y~ 446 (538)
T PRK15424 369 ATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH--YD 446 (538)
T ss_pred ecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh--CC
Confidence 7765311 1 112344567788777899999976 78888888887652 346666663 3322 35
Q ss_pred CCCCHHHHHHHHHhhhc
Q psy17062 345 TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 345 ~~G~~r~al~~l~~a~~ 361 (520)
|.||+|...+++++++.
T Consensus 447 WPGNvREL~nvier~~i 463 (538)
T PRK15424 447 WPGNVRELRNLMERLAL 463 (538)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 99999999999999876
No 185
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.32 E-value=2.2e-11 Score=132.93 Aligned_cols=210 Identities=13% Similarity=0.176 Sum_probs=148.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
..+.++|.+..+.++.+.+..... ...+|||+|++||||+++|+++.+..... +.+|+.+||..+.. ..+
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~--~~~pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~~~~~-----~~~ 392 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAK--SSFPVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQLYPD-----EAL 392 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhC--cCCCEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECCCCCh-----HHH
Confidence 356789999999999999888644 44459999999999999999999865332 56899999998753 112
Q ss_pred HHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--C------CCcEEEEEEEcCCC-
Q psy17062 217 LELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--P------KSRLIILCIANTMD- 287 (520)
Q Consensus 217 ~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--~------~~~v~vI~~tn~~~- 287 (520)
.+.++|...... .......|.. .....||||||+.|....|..|+.+++.... . ..++.+|++++..-
T Consensus 393 ~~elfg~~~~~~--~~~~~g~~~~-a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~ 469 (638)
T PRK11388 393 AEEFLGSDRTDS--ENGRLSKFEL-AHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA 469 (638)
T ss_pred HHHhcCCCCcCc--cCCCCCceeE-CCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH
Confidence 234445321000 0000001222 3577899999999999999999999974321 1 12567888777531
Q ss_pred -Cc-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC-------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 288 -LP-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN-------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 288 -~~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~-------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
.. ...+...+..|+....|.+||+.+ +++..++..++... ..+++++++.|... .+.||+|...+++
T Consensus 470 ~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y--~WPGNvreL~~~l 547 (638)
T PRK11388 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY--RWPGNDFELRSVI 547 (638)
T ss_pred HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC--CCCChHHHHHHHH
Confidence 11 123455677888777899999976 57777777776543 35899999999885 6899999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+++..
T Consensus 548 ~~~~~ 552 (638)
T PRK11388 548 ENLAL 552 (638)
T ss_pred HHHHH
Confidence 99875
No 186
>KOG0743|consensus
Probab=99.32 E-value=3.5e-11 Score=119.37 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhc---CC--CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 145 EAEFQSIHRFLLSKISQ---ST--TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~~---~~--~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
+..++.|.+|+...--. +. -++.|||||||||||+++.++|+.| ++.++-++-.+..+..
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt~v~~n~--------- 275 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLELTEVKLDS--------- 275 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeeeccccCcH---------
Confidence 45566677776652111 11 2579999999999999999999999 8888888776654322
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccC------------------hHHHHHHHHhcCCCC-CcEEEE
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR------------------QDVIYNILEYLNKPK-SRLIIL 280 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~------------------~~~L~~ll~~~~~~~-~~v~vI 280 (520)
.|+.++......+||+|+|||.-...+ .+-|++++++.-... ..-++|
T Consensus 276 -------------dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 276 -------------DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred -------------HHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 256666666788999999999885521 124888888663211 244588
Q ss_pred EEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHc
Q psy17062 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLE 342 (520)
Q Consensus 281 ~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~ 342 (520)
.|||..+-++.+|.++ .|++.+ |++...+.++...++..++.... +....+.|.+..
T Consensus 343 FTTNh~EkLDPALlRp--GRmDmh-I~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~ 399 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRP--GRMDMH-IYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLI 399 (457)
T ss_pred EecCChhhcCHhhcCC--CcceeE-EEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHh
Confidence 8999998666555433 588765 99999999999999999997521 344444444443
No 187
>KOG2680|consensus
Probab=99.32 E-value=4.2e-11 Score=111.80 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=85.6
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC-------CCc-hhhhhhhhhccCCcceEEeCCCCH
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM-------DLP-ERTLKGKVSSRMGLTRLMFKPYDH 313 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~-------~~~-~~~l~~~l~sR~~~~~i~~~~~~~ 313 (520)
-.|.||||||+|.|+-.....|+..++.- -+++ +|.++|+- +.. ...++..|..|+-+ |.-.||+.
T Consensus 287 ivpGVLFIDEvHMLDIEcFsFlNrAlE~d---~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~lI--I~t~py~~ 360 (454)
T KOG2680|consen 287 IVPGVLFIDEVHMLDIECFSFLNRALEND---MAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLI--ISTQPYTE 360 (454)
T ss_pred eccceEEEeeehhhhhHHHHHHHHHhhhc---cCcE-EEEEcCCceEEeecCCCCCCCCCcHHHhhhhhe--eecccCcH
Confidence 45889999999999998888898888732 3455 44456642 111 11245567777744 99999999
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 314 HQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 314 ~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+++.+||+.+|... ..+++++++.|... +..-.+|.+++++..+..
T Consensus 361 ~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i--~~~tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 361 EDIKKILRIRCQEEDVEMNPDALDLLTKI--GEATSLRYAIHLITAASL 407 (454)
T ss_pred HHHHHHHHhhhhhhccccCHHHHHHHHHh--hhhhhHHHHHHHHHHHHH
Confidence 99999999999876 78899999999887 455679999999887765
No 188
>KOG0990|consensus
Probab=99.31 E-value=3.2e-12 Score=120.79 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=132.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++++++-+..+.++. ....-.++|+|||||+|||+.+.+.++.+.........+.++++++-..
T Consensus 43 v~~~~ei~st~~~~~----~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg------------ 106 (360)
T KOG0990|consen 43 VIKQEPIWSTENRYS----GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG------------ 106 (360)
T ss_pred HhcCCchhhHHHHhc----cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC------------
Confidence 456666666666663 3334458999999999999999999999855211111233444443321
Q ss_pred hcCCCChHHH--HHHHH--HHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhh
Q psy17062 221 LNVDAPPEQA--KAMLE--RHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGK 296 (520)
Q Consensus 221 ~g~~~~~~~~--~~~l~--~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~ 296 (520)
......++ +...+ ..|.......++|+||+|.+....|+.|...++.+. .++.++.++|... .+.+.
T Consensus 107 --id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t---~n~rF~ii~n~~~----ki~pa 177 (360)
T KOG0990|consen 107 --IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT---ANTRFATISNPPQ----KIHPA 177 (360)
T ss_pred --CcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc---cceEEEEeccChh----hcCch
Confidence 11111111 11111 122222467899999999999999999999887553 3444555567654 35678
Q ss_pred hhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 297 VSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 297 l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.+||.. +.|.+++..+....+.+.++.. ...+++....+++. ..||+|.|++.++..+.
T Consensus 178 ~qsRctr--frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~---s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 178 QQSRCTR--FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL---SVGDMRVALNYLQSILK 238 (360)
T ss_pred hhccccc--CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 8899964 9999999999999999999876 56678888888887 89999999999998775
No 189
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.29 E-value=3e-11 Score=132.75 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=114.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHHHHHHcCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAMLERHFTRP 241 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l~~~~~~~ 241 (520)
+..+||-|.||+|||+++.++|+.. +..++.+|.++-++ +-.|+|...+.... +.....-|-.+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTd--------L~DLfGsd~Pve~~Gef~w~dapfL~a 1608 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTD--------LCDLFGSDLPVEEGGEFRWMDAPFLHA 1608 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccch--------HHHHhCCCCCcccCceeEecccHHHHH
Confidence 3569999999999999999999998 88999999988776 45566666554321 11222222222
Q ss_pred -CCceEEEEcCCccccccChHHHHHHHHhcC-----------CCCCcEEEEEEEcCCCCch--hhhhhhhhccCCcceEE
Q psy17062 242 -HGPCVLLIDELDYLCNKRQDVIYNILEYLN-----------KPKSRLIILCIANTMDLPE--RTLKGKVSSRMGLTRLM 307 (520)
Q Consensus 242 -~~~~vLiiDEid~l~~~~~~~L~~ll~~~~-----------~~~~~v~vI~~tn~~~~~~--~~l~~~l~sR~~~~~i~ 307 (520)
+.+.++++||++.......+.|...|+... .-+.++.|.++-|+-+.-. ..++..|..||.+ |.
T Consensus 1609 mr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv--V~ 1686 (4600)
T COG5271 1609 MRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV--VK 1686 (4600)
T ss_pred hhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe--EE
Confidence 678899999999988877788888887532 1245677777777654322 2467889999966 99
Q ss_pred eCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy17062 308 FKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARL 341 (520)
Q Consensus 308 ~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~ 341 (520)
+..++.+++..|...... .+.++..-.+.+.
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp---~v~~d~~~kiik~ 1717 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP---QVNEDWRLKIIKF 1717 (4600)
T ss_pred ecccccchHHHHHHhhCC---ccChHHHHHHHHH
Confidence 999999999999887664 3455554444443
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.29 E-value=8.6e-11 Score=122.06 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=62.9
Q ss_pred CceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHH
Q psy17062 243 GPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il 320 (520)
.+.|++|.|+|.+... ....|.++.......... +|.++..... +..+..-+ ..+.|+-|+.+++.+++
T Consensus 81 ~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~--~i~~~~~~~~-----p~el~~~~--~~~~~~lP~~~ei~~~l 151 (489)
T CHL00195 81 TPALFLLKDFNRFLNDISISRKLRNLSRILKTQPKT--IIIIASELNI-----PKELKDLI--TVLEFPLPTESEIKKEL 151 (489)
T ss_pred CCcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCE--EEEEcCCCCC-----CHHHHhce--eEEeecCcCHHHHHHHH
Confidence 4789999999999743 122344443333222223 3333444333 33343333 44899999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHcCCC-CCCHHHHH
Q psy17062 321 QNRLKNN-NCFHPDAVQLVARLEPPT-SRSEIFCA 353 (520)
Q Consensus 321 ~~~l~~~-~~~~~~~l~~la~~~~~~-~G~~r~al 353 (520)
+...... ...++..++.+++.+.|. ..+++.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~ 186 (489)
T CHL00195 152 TRLIKSLNIKIDSELLENLTRACQGLSLERIRRVL 186 (489)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8877643 567889999999985553 23344443
No 191
>KOG2543|consensus
Probab=99.28 E-value=8.9e-11 Score=113.55 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=135.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHH
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSR 215 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~ 215 (520)
.+...++||+.++..+..++.+. ....+.+++|+|..|||||.+++.+.+.+ +.+.++++|.++.+...++..
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~-~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNN-SCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCC-CcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHH
Confidence 34456899999999999999874 22456677999999999999999999998 889999999999999999999
Q ss_pred HHHHHh--cCCCChH----HHHHHHHHHHcC--C----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 216 ILELLL--NVDAPPE----QAKAMLERHFTR--P----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 216 i~~~l~--g~~~~~~----~~~~~l~~~~~~--~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
|+.+.. ....... .....+...|.+ + ....+|++|.+|.+-......|..+++.....+.+.+.|..+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999883 1111111 111222223333 1 358899999999998776666666665543222223333322
Q ss_pred cCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 284 NTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFH----PDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 284 n~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~----~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
.... +...+ .-.+.+.+-.++||.|+.+++..|+.+--.. ... ...+..+..-...+++|+.....++..
T Consensus 156 ~~~~-e~~y~--~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~--~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~ 229 (438)
T KOG2543|consen 156 APSC-EKQYL--INTGTLEIVVLHFPQYSVEETQVILSRDNPG--KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISL 229 (438)
T ss_pred cccc-HHHhh--cccCCCCceEEecCCCCHHHHHHHHhcCCcc--ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2221 11111 0124455567999999999999998754331 112 222333333333355666665555444
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=3e-10 Score=111.93 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH-----
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL----- 220 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l----- 220 (520)
...+.+...+. .++.+..+||+||.|+||+++|+.+++.+....... .-.|..+.+ +..+
T Consensus 9 ~~~~~l~~~~~---~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~----~~~Cg~C~s--------C~~~~~g~H 73 (325)
T PRK06871 9 PTYQQITQAFQ---QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG----DQPCGQCHS--------CHLFQAGNH 73 (325)
T ss_pred HHHHHHHHHHH---cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC----CCCCCCCHH--------HHHHhcCCC
Confidence 33444444443 234556788999999999999999999997643110 011222211 1111
Q ss_pred ---------hcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 221 ---------LNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 221 ---------~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
.|.....+++.+......... +...|+|||++|.|....++.|+..|+++ ..++++|.+|+..+
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP---p~~~~fiL~t~~~~-- 148 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP---RPNTYFLLQADLSA-- 148 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEECChH--
Confidence 012223334443333332222 67789999999999999999999999965 56777887777654
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
.+.+.+.|||.. +.|++++.+++.+.|..... ..+..+..++.. ..|.+..|+.++..
T Consensus 149 --~llpTI~SRC~~--~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l---~~g~p~~A~~~~~~ 206 (325)
T PRK06871 149 --ALLPTIYSRCQT--WLIHPPEEQQALDWLQAQSS----AEISEILTALRI---NYGRPLLALTFLEQ 206 (325)
T ss_pred --hCchHHHhhceE--EeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHH---cCCCHHHHHHHhhC
Confidence 356788999965 99999999999998887643 233345555555 66778777776643
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.7e-11 Score=115.58 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=115.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--- 241 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--- 241 (520)
.|+||.||.|+|||.||+.+|+.| +++|...++..++. ..++|+. .++.+.+++..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L------nVPFaiADATtLTE---------AGYVGED-----VENillkLlqaadyd 157 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL------NVPFAIADATTLTE---------AGYVGED-----VENILLKLLQAADYD 157 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh------CCCeeeccccchhh---------ccccchh-----HHHHHHHHHHHcccC
Confidence 579999999999999999999999 99999999988763 4455553 666666666665
Q ss_pred ---CCceEEEEcCCccccccC--------------hHHHHHHHHhcC------------------CCCCcEEEEEEEcC-
Q psy17062 242 ---HGPCVLLIDELDYLCNKR--------------QDVIYNILEYLN------------------KPKSRLIILCIANT- 285 (520)
Q Consensus 242 ---~~~~vLiiDEid~l~~~~--------------~~~L~~ll~~~~------------------~~~~~v~vI~~tn~- 285 (520)
....||+|||||.+.... |..|+.+++..- ....++.+|+-+.-
T Consensus 158 V~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~ 237 (408)
T COG1219 158 VERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFA 237 (408)
T ss_pred HHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccc
Confidence 567899999999998753 567888887421 12345666653211
Q ss_pred ---------------------------------------CCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHH----
Q psy17062 286 ---------------------------------------MDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQN---- 322 (520)
Q Consensus 286 ---------------------------------------~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~---- 322 (520)
.++..+.+.+.|..|+.+. ..+.+++.+++.+||..
T Consensus 238 GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvi-a~L~~Lde~aLv~ILtePkNA 316 (408)
T COG1219 238 GLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVI-ATLEELDEDALVQILTEPKNA 316 (408)
T ss_pred cHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhccccee-eehhhcCHHHHHHHHhcccHH
Confidence 0122234567888998653 78999999999999873
Q ss_pred HHhCC----------CCCCHHHHHHHHHHcCC
Q psy17062 323 RLKNN----------NCFHPDAVQLVARLEPP 344 (520)
Q Consensus 323 ~l~~~----------~~~~~~~l~~la~~~~~ 344 (520)
..+++ ..|+++++..+|+..-.
T Consensus 317 lvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~ 348 (408)
T COG1219 317 LVKQYQKLFEMDGVELEFTEEALKAIAKKAIE 348 (408)
T ss_pred HHHHHHHHhcccCceEEEcHHHHHHHHHHHHH
Confidence 11111 67899999999987543
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.9e-10 Score=114.50 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh-----
Q psy17062 147 EFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL----- 221 (520)
Q Consensus 147 ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~----- 221 (520)
..+++...+. .++.+..+||+||+|+||+++|.++|+.+......+. -.|..+.+ +..+.
T Consensus 10 ~~~~l~~~~~---~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~----~~Cg~C~s--------C~~~~~g~HP 74 (334)
T PRK07993 10 DYEQLVGSYQ---AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH----KSCGHCRG--------CQLMQAGTHP 74 (334)
T ss_pred HHHHHHHHHH---cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCHH--------HHHHHcCCCC
Confidence 3444444443 3455667889999999999999999999966421100 02222211 11110
Q ss_pred ----------cCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 222 ----------NVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 222 ----------g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
+.....+++.+......... +...|+|||++|.|.....+.|+.+|+++ ..+.++|.+++..+
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~-- 149 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP---PENTWFFLACREPA-- 149 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC---CCCeEEEEEECChh--
Confidence 01123344444333333333 67889999999999999999999999965 56777888787655
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
.+.+.+.|||+. +.|++++.+++.+.|.... .++++....+++. +.|++..|+.++..
T Consensus 150 --~lLpTIrSRCq~--~~~~~~~~~~~~~~L~~~~----~~~~~~a~~~~~l---a~G~~~~Al~l~~~ 207 (334)
T PRK07993 150 --RLLATLRSRCRL--HYLAPPPEQYALTWLSREV----TMSQDALLAALRL---SAGAPGAALALLQP 207 (334)
T ss_pred --hChHHHHhcccc--ccCCCCCHHHHHHHHHHcc----CCCHHHHHHHHHH---cCCCHHHHHHHhcC
Confidence 356788999975 9999999999998886542 2456666677776 78888888877653
No 195
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=2e-12 Score=112.83 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=78.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-CCc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-HGP 244 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-~~~ 244 (520)
+|+|+||||||||++++.+++.+ +.+++.+++....+...++ |...............+..+ ..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~--------g~~~~~~~~~~~~~~~l~~a~~~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLI--------GSYDPSNGQFEFKDGPLVRAMRKG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHH--------CEEET-TTTTCEEE-CCCTTHHEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccce--------eeeeecccccccccccccccccce
Confidence 58999999999999999999999 8889999998877744332 22110000000000111111 378
Q ss_pred eEEEEcCCccccccChHHHHHHHHhcCC----------CCC------cEEEEEEEcCCCCchhhhhhhhhccC
Q psy17062 245 CVLLIDELDYLCNKRQDVIYNILEYLNK----------PKS------RLIILCIANTMDLPERTLKGKVSSRM 301 (520)
Q Consensus 245 ~vLiiDEid~l~~~~~~~L~~ll~~~~~----------~~~------~v~vI~~tn~~~~~~~~l~~~l~sR~ 301 (520)
.|++|||++......++.|+.+++.... ... ++.+|+++|+.+.....+.+++.+||
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 9999999999998888888898874210 111 48999999988733334678888886
No 196
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=3.3e-11 Score=122.70 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=119.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
+...++||++.++.+...+.. +.++||.||||||||++|+++++.+... + +|.++.+.-. ++.
T Consensus 18 l~~~i~gre~vI~lll~aala------g~hVLL~GpPGTGKT~LAraLa~~~~~~---~-~F~~~~~~ft-tp~------ 80 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFAFQNA---R-AFEYLMTRFS-TPE------ 80 (498)
T ss_pred HhhhccCcHHHHHHHHHHHcc------CCCEEEECCCChhHHHHHHHHHHHhccc---C-cceeeeeeec-CcH------
Confidence 344578999999988777654 3789999999999999999999976332 1 3444444321 222
Q ss_pred HHHHhcCC-CChHHHHHHHHHHHcCC-CCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCC
Q psy17062 217 LELLLNVD-APPEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTM 286 (520)
Q Consensus 217 ~~~l~g~~-~~~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~ 286 (520)
.++|.. .........+....... ....+||+|||+.+....++.|+.+++... ....++ +++++|..
T Consensus 81 --DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rf-iv~ATN~L 157 (498)
T PRK13531 81 --EVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRL-LVTASNEL 157 (498)
T ss_pred --HhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcE-EEEECCCC
Confidence 222321 00000000111111110 123499999999999999999999996432 011223 34445543
Q ss_pred CCchhhhhhhhhccCCcceEEeCCCC-HHHHHHHHHHHHhC----C--------------------CCCCHHHHHHHHHH
Q psy17062 287 DLPERTLKGKVSSRMGLTRLMFKPYD-HHQLQEIVQNRLKN----N--------------------NCFHPDAVQLVARL 341 (520)
Q Consensus 287 ~~~~~~l~~~l~sR~~~~~i~~~~~~-~~~~~~Il~~~l~~----~--------------------~~~~~~~l~~la~~ 341 (520)
.. .......+..||. ..+.+++++ .++..+||...... . ..+++...++|...
T Consensus 158 PE-~g~~leAL~DRFl-iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L 235 (498)
T PRK13531 158 PE-ADSSLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQL 235 (498)
T ss_pred cc-cCCchHHhHhhEE-EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHH
Confidence 21 1224557888994 459999997 46667788653210 0 45566677777666
Q ss_pred cCC---C----CCCHHHHHHHHHhhhc
Q psy17062 342 EPP---T----SRSEIFCANHYTNEKK 361 (520)
Q Consensus 342 ~~~---~----~G~~r~al~~l~~a~~ 361 (520)
... . .-.+|..+.++..+..
T Consensus 236 ~~~lr~~r~~~~~SpR~~~~l~~~akA 262 (498)
T PRK13531 236 RQQLDALPNAPYVSDRRWKKAIRLLQA 262 (498)
T ss_pred HHHHhcCCCCCCcCcHHHHHHHHHHHH
Confidence 531 1 1356776666655443
No 197
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.26 E-value=1.5e-11 Score=112.74 Aligned_cols=128 Identities=20% Similarity=0.355 Sum_probs=73.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC-hHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE-PKRAYSRILE 218 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~-~~~~~~~i~~ 218 (520)
.|+||+++++++..+|. ....+.+.+++|+|++|+|||++++.++..+... +..++.++|..... +...+..++.
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER---GGYVISINCDDSERNPYSPFRSALR 76 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH---T--EEEEEEETTTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEEEeccccchhhHHHHHHH
Confidence 37899999999999998 6677778899999999999999999999999876 33377777766621 3222244444
Q ss_pred HHhcCCCC------------------------------------------hHHHH----HHHHHHHcCC---CCceEEEE
Q psy17062 219 LLLNVDAP------------------------------------------PEQAK----AMLERHFTRP---HGPCVLLI 249 (520)
Q Consensus 219 ~l~g~~~~------------------------------------------~~~~~----~~l~~~~~~~---~~~~vLii 249 (520)
.+...... ..... ..+...+... ..|.+|+|
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~vlvi 156 (185)
T PF13191_consen 77 QLIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKPLVLVI 156 (185)
T ss_dssp HHS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE---EEEEE
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44322100 00111 3333343333 35699999
Q ss_pred cCCccccccChHHHHHHHHhcC
Q psy17062 250 DELDYLCNKRQDVIYNILEYLN 271 (520)
Q Consensus 250 DEid~l~~~~~~~L~~ll~~~~ 271 (520)
|++|++....+..|..+++...
T Consensus 157 Dd~d~~~~~~~~~l~~l~~~~~ 178 (185)
T PF13191_consen 157 DDLDWADPASLDLLRALARRLQ 178 (185)
T ss_dssp ETTTHHHTTHHHHHHH------
T ss_pred eCCCCCCcHHHHHHHhcccccc
Confidence 9999999888888888887553
No 198
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.26 E-value=2.1e-11 Score=128.62 Aligned_cols=209 Identities=18% Similarity=0.243 Sum_probs=144.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|....+.++.+.+.... .....++|+|++||||+++|+++.+..... +.+++.++|..+... .+-.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~i~i~c~~~~~~-----~~~~ 207 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS--RSSISVLINGESGTGKELVAHALHRHSPRA---KAPFIALNMAAIPKD-----LIES 207 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh--ccCCeEEEEeCCCCcHHHHHHHHHhcCCCC---CCCeEeeeCCCCCHH-----HHHH
Confidence 358899999999888887643 345669999999999999999998865322 578999999887431 1223
Q ss_pred HHhcCCCChHH-HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCCc
Q psy17062 219 LLLNVDAPPEQ-AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDLP 289 (520)
Q Consensus 219 ~l~g~~~~~~~-~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~~ 289 (520)
.++|....... ....-...|.. ..+..|||||++.|....|..|+.+++.... ....+.+|++++.. ..
T Consensus 208 ~lfg~~~g~~~~~~~~~~g~~~~-a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~-l~ 285 (469)
T PRK10923 208 ELFGHEKGAFTGANTIRQGRFEQ-ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN-LE 285 (469)
T ss_pred HhcCCCCCCCCCCCcCCCCCeeE-CCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC-HH
Confidence 34443211000 00000011222 3456899999999999999999999974321 12345777777642 21
Q ss_pred ----hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 290 ----ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 290 ----~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
...+...+..|+....|.+||+.. +++..++.++++.. ..+++++++.|... .+.||++...++
T Consensus 286 ~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNv~eL~~~ 363 (469)
T PRK10923 286 QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL--AWPGNVRQLENT 363 (469)
T ss_pred HHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--CCCChHHHHHHH
Confidence 123456777888766799999966 67777777776543 35899999999876 699999999999
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
+++++.
T Consensus 364 i~~~~~ 369 (469)
T PRK10923 364 CRWLTV 369 (469)
T ss_pred HHHHHH
Confidence 999876
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=1.2e-10 Score=104.09 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-----------------CeEEEEEcccc
Q psy17062 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-----------------KFVYVEMNALS 205 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-----------------~~~~i~v~~~~ 205 (520)
|+++.++.|...+. .+..+..+||+||+|+||+++|..+++.+...... ...+++++...
T Consensus 1 gq~~~~~~L~~~~~---~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIK---SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp S-HHHHHHHHHHHH---CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred CcHHHHHHHHHHHH---cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 45566666665554 33456678999999999999999999998765422 11222222221
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
. +.....+++. .+...+... ....|+||||+|.|....++.|+..|+.+ ..++.+|.+
T Consensus 78 ~---------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~ 138 (162)
T PF13177_consen 78 K---------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILI 138 (162)
T ss_dssp S---------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEE
T ss_pred c---------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEE
Confidence 1 0012233333 233333332 56889999999999999999999999965 457788888
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCC
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYD 312 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~ 312 (520)
++..+ .+.+.+.|||.. +.|++++
T Consensus 139 t~~~~----~il~TI~SRc~~--i~~~~ls 162 (162)
T PF13177_consen 139 TNNPS----KILPTIRSRCQV--IRFRPLS 162 (162)
T ss_dssp ES-GG----GS-HHHHTTSEE--EEE----
T ss_pred ECChH----HChHHHHhhceE--EecCCCC
Confidence 87655 357789999965 9998864
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.5e-10 Score=110.45 Aligned_cols=184 Identities=16% Similarity=0.112 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---------------CeEEEEEcc-ccCCC
Q psy17062 145 EAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD---------------KFVYVEMNA-LSIPE 208 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~---------------~~~~i~v~~-~~~~~ 208 (520)
+...+.+...+. .++-+..+||+||+|+||+++|..+++.+...... ...+.++.. .+...
T Consensus 10 ~~~~~~l~~~~~---~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 10 QRAYDQTVAALD---AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHHHH---cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 334444444443 23445569999999999999999999998654211 011111110 00000
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
.. . ......+++.+......... +...|+|||++|.|.....+.|+..|+++ ..++++|.+++..
T Consensus 87 ~k---------~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~~~fiL~~~~~ 153 (319)
T PRK08769 87 DK---------L-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP---SPGRYLWLISAQP 153 (319)
T ss_pred cc---------c-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---CCCCeEEEEECCh
Confidence 00 0 00111222222222222222 56789999999999999999999999965 4566677777765
Q ss_pred CCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 287 DLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 287 ~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
+ .+.+.+.|||.. +.|++++.++..+.|... .+++.....++.. ..|.+..|+.++..
T Consensus 154 ~----~lLpTIrSRCq~--i~~~~~~~~~~~~~L~~~-----~~~~~~a~~~~~l---~~G~p~~A~~~~~~ 211 (319)
T PRK08769 154 A----RLPATIRSRCQR--LEFKLPPAHEALAWLLAQ-----GVSERAAQEALDA---ARGHPGLAAQWLRE 211 (319)
T ss_pred h----hCchHHHhhheE--eeCCCcCHHHHHHHHHHc-----CCChHHHHHHHHH---cCCCHHHHHHHhcC
Confidence 4 356789999965 999999999999888743 2345555566666 77888887776643
No 201
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=2e-11 Score=109.68 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH-HHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLK-QEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~-~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
+-.+++|.||+|||||.+|+++++.+. .. ..+++.+||..+...... ..++..+.+........
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~~v~~----------- 66 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPGYVGA----------- 66 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTCHHHH-----------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccccchH-Hhhhhhhhhcccceeec-----------
Confidence 346899999999999999999999994 22 459999999998762211 11223332322111111
Q ss_pred CCceEEEEcCCccccc-----------cChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC
Q psy17062 242 HGPCVLLIDELDYLCN-----------KRQDVIYNILEYLN--------KPKSRLIILCIANTMD 287 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~-----------~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~ 287 (520)
....||+|||||.+.. ..++.|+++|+... ....++++|+++|-..
T Consensus 67 ~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 67 EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1233999999999999 78899999997531 1235789999998754
No 202
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.22 E-value=8.2e-11 Score=118.90 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=99.5
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.+++.+..++.+...|.. ..+++|+||||||||++|+.++..+..... ...+..+....-.+ +..++..
T Consensus 176 d~~i~e~~le~l~~~L~~------~~~iil~GppGtGKT~lA~~la~~l~~~~~-~~~v~~VtFHpsyS----YeDFI~G 244 (459)
T PRK11331 176 DLFIPETTIETILKRLTI------KKNIILQGPPGVGKTFVARRLAYLLTGEKA-PQRVNMVQFHQSYS----YEDFIQG 244 (459)
T ss_pred cccCCHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhcCCcc-cceeeEEeeccccc----HHHHhcc
Confidence 356777788888777753 367999999999999999999998743211 01111222222111 1112211
Q ss_pred HhcCCCCh----HHHHHHHHHHHcCCCCceEEEEcCCccccccC-hHHHHHHHHhc-------------------CCCCC
Q psy17062 220 LLNVDAPP----EQAKAMLERHFTRPHGPCVLLIDELDYLCNKR-QDVIYNILEYL-------------------NKPKS 275 (520)
Q Consensus 220 l~g~~~~~----~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~-~~~L~~ll~~~-------------------~~~~~ 275 (520)
+....... .-..+.+.........+.||||||++...... ...+..+++.. -....
T Consensus 245 ~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 245 YRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred cCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 11111111 11222333333333578999999999998653 55666666521 12245
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCC-CCHHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKP-YDHHQLQEI 319 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~-~~~~~~~~I 319 (520)
++.||||.|..+.--..++.++.+||.. |.+.| ++.......
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~f--i~i~p~~~~~~~~~~ 367 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSF--IDIEPGFDTPQFRNF 367 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhhe--EEecCCCChHHHHHH
Confidence 8999999999875433567889999976 77776 555544444
No 203
>KOG0745|consensus
Probab=99.20 E-value=1.6e-10 Score=113.09 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=122.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--- 241 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--- 241 (520)
.|+||.||+|+|||.|++.+|+.+ +++++..+|..++ -..++|+. ++..+.+++..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLT---------QAGYVGeD-----VEsvi~KLl~~A~~n 286 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLT---------QAGYVGED-----VESVIQKLLQEAEYN 286 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchh---------hccccccc-----HHHHHHHHHHHccCC
Confidence 479999999999999999999999 9999999999876 34455654 555566666655
Q ss_pred ---CCceEEEEcCCcccccc--------------ChHHHHHHHHhcC------------------CCCCcEEEEEEEcC-
Q psy17062 242 ---HGPCVLLIDELDYLCNK--------------RQDVIYNILEYLN------------------KPKSRLIILCIANT- 285 (520)
Q Consensus 242 ---~~~~vLiiDEid~l~~~--------------~~~~L~~ll~~~~------------------~~~~~v~vI~~tn~- 285 (520)
....|+||||+|.+... .|..|+.+++..- ....+|.+|+...-
T Consensus 287 VekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~ 366 (564)
T KOG0745|consen 287 VEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFV 366 (564)
T ss_pred HHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEeccccc
Confidence 56789999999999843 2567888887420 11234555542210
Q ss_pred ---------------------------------------------------CCCchhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 286 ---------------------------------------------------MDLPERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 286 ---------------------------------------------------~~~~~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
.++..+-+.+.|..||.+ .+.|..++.+
T Consensus 367 ~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPV-lVplh~L~~~ 445 (564)
T KOG0745|consen 367 GLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPV-LVPLHSLDED 445 (564)
T ss_pred chHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccce-EeeccccCHH
Confidence 122334456788899965 4899999999
Q ss_pred HHHHHHHHH----HhCC----------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 315 QLQEIVQNR----LKNN----------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 315 ~~~~Il~~~----l~~~----------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
++.++|..- +.++ ..|++++++.||++.-.-.-.+|-+..+++.+.
T Consensus 446 ~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~L 505 (564)
T KOG0745|consen 446 QLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLL 505 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 999998731 1111 678999999999985443334455445555543
No 204
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.20 E-value=6e-11 Score=118.92 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++|++..+..+...+.. ++++||.|+||||||++|+.+++.+ +.+++.+.|.....+.+++....-..
T Consensus 26 ~~g~~~~~~~~l~a~~~------~~~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 26 VVGDEEVIELALLALLA------GGHVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred eeccHHHHHHHHHHHHc------CCCEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhh
Confidence 67887777776665543 3779999999999999999999999 89999999998877655533221110
Q ss_pred hcCCCChHHHHHHHHHHHc--CC--CCc--eEEEEcCCccccccChHHHHHHHHhcC---------CCCCcEEEEEEEcC
Q psy17062 221 LNVDAPPEQAKAMLERHFT--RP--HGP--CVLLIDELDYLCNKRQDVIYNILEYLN---------KPKSRLIILCIANT 285 (520)
Q Consensus 221 ~g~~~~~~~~~~~l~~~~~--~~--~~~--~vLiiDEid~l~~~~~~~L~~ll~~~~---------~~~~~v~vI~~tn~ 285 (520)
. ... ...+. .. -.. .|+++|||+...+..++.|+.+|+... .....+.+|+++|+
T Consensus 94 ~--------~~~--~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 94 L--------LLE--PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred h--------hcc--CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc
Confidence 0 000 11111 10 111 599999999999999999999998631 12357788888896
Q ss_pred CCCch-hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHh
Q psy17062 286 MDLPE-RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLK 325 (520)
Q Consensus 286 ~~~~~-~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~ 325 (520)
.+... +.+..++..||... +.+..|..++-..++.....
T Consensus 164 ~e~~g~~~l~eA~ldRf~~~-~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 164 GEYEGTYPLPEALLDRFLLR-IYVDYPDSEEEERIILARVG 203 (329)
T ss_pred cccCCCcCCCHHHHhhEEEE-EecCCCCchHHHHHHHHhCc
Confidence 55443 23577888999533 88888855544444444433
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.20 E-value=6.9e-11 Score=123.92 Aligned_cols=210 Identities=17% Similarity=0.140 Sum_probs=143.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|....+..+...+... .....+++|+|++||||+++|+.+....... ..+++.++|..+.. .. +-.
T Consensus 139 ~~lig~s~~~~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~~~--~~---~~~ 208 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI--APSDITVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAIPE--NL---LES 208 (445)
T ss_pred cceeecCHHHHHHHHHHHHH--hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCCCh--HH---HHH
Confidence 35788888899888888764 2344669999999999999999998765322 56799999998753 11 223
Q ss_pred HHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC-
Q psy17062 219 LLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL- 288 (520)
Q Consensus 219 ~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~- 288 (520)
.++|..... ..........+.. ..+.+|||||++.|....|..|+.+++.... ...++.+|++++..-.
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 287 (445)
T TIGR02915 209 ELFGYEKGAFTGAVKQTLGKIEY-AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKR 287 (445)
T ss_pred HhcCCCCCCcCCCccCCCCceeE-CCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHH
Confidence 344432110 0000000111222 3567899999999999999999999974310 1235678887765311
Q ss_pred -c-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 289 -P-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 289 -~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
. ...+...+..|+....|.+||+.. +++..++..+++.. ..+++++++.|... .+.||++.+.+++
T Consensus 288 ~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~i 365 (445)
T TIGR02915 288 MIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH--AWPGNVRELENKV 365 (445)
T ss_pred HHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC--CCCChHHHHHHHH
Confidence 0 122445577788777799999965 56666776666543 46899999999876 5899999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
++++.
T Consensus 366 ~~a~~ 370 (445)
T TIGR02915 366 KRAVI 370 (445)
T ss_pred HHHHH
Confidence 99876
No 206
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.19 E-value=2e-10 Score=113.91 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=137.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCCChHHHHH
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~ 214 (520)
+-...++|+++....|...+ .....+++||.|++|||||++++.+++.+...... +.+| +|. ..+|.....
T Consensus 14 ~pf~~ivGq~~~k~al~~~~----~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf---~~~-p~~p~~~~~ 85 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNV----IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPF---NSH-PSDPELMSD 85 (350)
T ss_pred CCHHHHhChHHHHHHHHHhc----cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCC---CCC-CCChhhhch
Confidence 33456789987655554443 44555789999999999999999999988654211 1112 111 111211111
Q ss_pred HHHHHHhc-C----------------CCChHH------HHHHHHHHH---c----CCCCceEEEEcCCccccccChHHHH
Q psy17062 215 RILELLLN-V----------------DAPPEQ------AKAMLERHF---T----RPHGPCVLLIDELDYLCNKRQDVIY 264 (520)
Q Consensus 215 ~i~~~l~g-~----------------~~~~~~------~~~~l~~~~---~----~~~~~~vLiiDEid~l~~~~~~~L~ 264 (520)
.+.....+ . ....+. ....+.... . ......+|+|||++.+....|..|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 11111100 0 000110 111111111 0 1145689999999999999999999
Q ss_pred HHHHhcC----------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCC-HHHHHHHHHHHHhC-------
Q psy17062 265 NILEYLN----------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYD-HHQLQEIVQNRLKN------- 326 (520)
Q Consensus 265 ~ll~~~~----------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~-~~~~~~Il~~~l~~------- 326 (520)
.+++... ....++++|++.|..+ ..+.+.+..||... +.+..++ .+...+|++.....
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~e---g~l~~~LldRf~l~-i~l~~~~~~~~e~~il~~~~~~~~~~~~~ 241 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEE---GELRPQLLDRFGMH-AEIRTVKDPELRVKIVEQRTSFDKNPQEF 241 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCccc---CCCCHHHHHHhCce-eecCCCCChHHHHHHHHhhhccccChhhh
Confidence 9986421 1245788888777653 23677888999865 7888887 58888888764320
Q ss_pred -----------------------CCCCCHHHHHHHHHHcCCCCC-CHHHHHHHHHhhhccCCCCceecccccchhhhhcc
Q psy17062 327 -----------------------NNCFHPDAVQLVARLEPPTSR-SEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEEN 382 (520)
Q Consensus 327 -----------------------~~~~~~~~l~~la~~~~~~~G-~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~ 382 (520)
...+++..+++|+..+..... ..|..+.+++.|.. .|.-.+.+.++.+
T Consensus 242 ~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA--------~Aal~GR~~V~pd 313 (350)
T CHL00081 242 REKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA--------LAAFEGRTEVTPK 313 (350)
T ss_pred hhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH--------HHHHcCCCCCCHH
Confidence 055778888888877655432 46666666655544 3444555666666
Q ss_pred ccccc
Q psy17062 383 HVIGK 387 (520)
Q Consensus 383 ~v~~a 387 (520)
++..+
T Consensus 314 Dv~~~ 318 (350)
T CHL00081 314 DIFKV 318 (350)
T ss_pred HHHHH
Confidence 65544
No 207
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.18 E-value=1.5e-10 Score=114.61 Aligned_cols=229 Identities=14% Similarity=0.139 Sum_probs=131.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-Ce--EEEEEccc-cCC--ChHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KF--VYVEMNAL-SIP--EPKRA 212 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~--~~i~v~~~-~~~--~~~~~ 212 (520)
..++|++..+..+.-.+-. ...+++||+|+||+|||++++.+++.+...... +. .+..+.+. +.. +...+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~----~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID----PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc----cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 4578998887766543321 123679999999999999999999988421100 00 11111100 000 00000
Q ss_pred HHH------H-----HHHHhcCCCChHHHHHHHHH---HHcCC----CCceEEEEcCCccccccChHHHHHHHHhcC---
Q psy17062 213 YSR------I-----LELLLNVDAPPEQAKAMLER---HFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLN--- 271 (520)
Q Consensus 213 ~~~------i-----~~~l~g~~~~~~~~~~~l~~---~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--- 271 (520)
... + -..++|. -.....+.. .|... ....+|||||++.+....++.|.+.++...
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~----~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGA----LDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred cccCCccccCCCCCCcceeecc----hhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 000 0 0001110 001111100 01111 344689999999999999999999997432
Q ss_pred -------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCH-HHHHHHHHHHHhC---------------C-
Q psy17062 272 -------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDH-HQLQEIVQNRLKN---------------N- 327 (520)
Q Consensus 272 -------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~---------------~- 327 (520)
....++++|++.|..+ ..+.+.+..||... +.++++.. +++.+|+...... .
T Consensus 160 ~r~G~~~~~p~rfiviAt~NP~e---~~l~~aLldRF~~~-v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PRK13407 160 EREGLSIRHPARFVLVGSGNPEE---GELRPQLLDRFGLS-VEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQ 235 (334)
T ss_pred EECCeEEecCCCEEEEecCCccc---CCCCHHHHhhcceE-EEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccC
Confidence 1245788888888643 23677888999765 67776665 8888888764321 0
Q ss_pred --------------CCCCHHHHHHHHHHcCCCC-CCHHHHHHHHHhhhccCCCCceecccccchhhhhccccccc
Q psy17062 328 --------------NCFHPDAVQLVARLEPPTS-RSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGK 387 (520)
Q Consensus 328 --------------~~~~~~~l~~la~~~~~~~-G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a 387 (520)
..++++.+++++..+.... ...|..+.+++.|.. .|...+.+.++.+++...
T Consensus 236 ~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a--------~A~l~Gr~~V~~~Di~~~ 302 (334)
T PRK13407 236 LRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARA--------LAAFEGAEAVGRSHLRSV 302 (334)
T ss_pred CHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH--------HHHHcCCCeeCHHHHHHH
Confidence 4577888888887765533 356666665555544 344555566666666433
No 208
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.18 E-value=6.1e-10 Score=109.64 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
|+.++++|.+.|.... .....+.|+|++|+|||++|..+++....... --.+++++.....+...++..|+.++...
T Consensus 1 re~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~-f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNR-FDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC-CTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeecccccccccc-ccccccccccccccccccccccccccccc
Confidence 7899999999998742 66778999999999999999999988542221 12456777777777788899998888654
Q ss_pred CC------ChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhh
Q psy17062 224 DA------PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKV 297 (520)
Q Consensus 224 ~~------~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l 297 (520)
.. ........+...+.. .+++||||+++... .+..+.........+..+|.||....... .+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTTR~~~v~~-----~~ 145 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKD--KRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTTRDRSVAG-----SL 145 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCC--TSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEESCGGGGT-----TH
T ss_pred ccccccccccccccccchhhhcc--ccceeeeeeecccc-----ccccccccccccccccccccccccccccc-----cc
Confidence 21 234455556555554 59999999998764 22222221111123456676776643221 11
Q ss_pred hccCCcceEEeCCCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHc
Q psy17062 298 SSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN----CFHPDAVQLVARLE 342 (520)
Q Consensus 298 ~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~----~~~~~~l~~la~~~ 342 (520)
... ...+.+.+++.++..+++........ ...++..+.|++.+
T Consensus 146 ~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c 192 (287)
T PF00931_consen 146 GGT--DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKC 192 (287)
T ss_dssp HSC--EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHT
T ss_pred ccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 24599999999999999999876422 22245567777773
No 209
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.3e-11 Score=116.78 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.4
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
++..+++.||+|||||||||||||+||||||++-
T Consensus 176 lF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 176 LFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred HHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4556779999999999999999999999999864
No 210
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.17 E-value=2.8e-10 Score=120.01 Aligned_cols=209 Identities=15% Similarity=0.181 Sum_probs=143.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|....+.++...+... ......++|.|.+||||+++++++.+..... ..+++.++|..+.. ..+ ...
T Consensus 135 ~lig~s~~~~~v~~~i~~~--a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~~--~~~---~~~ 204 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL--SRSDITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIPK--DLI---ESE 204 (463)
T ss_pred ceeecCHHHHHHHHHHHHH--hCcCCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCCH--HHH---HHH
Confidence 4778888888888888763 3344569999999999999999998865322 57899999988743 121 233
Q ss_pred HhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC--
Q psy17062 220 LLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL-- 288 (520)
Q Consensus 220 l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~-- 288 (520)
++|..... ......-...+.. ..+..||||||+.|....|..|+.+++.... ...++.+|++++..-.
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~ 283 (463)
T TIGR01818 205 LFGHEKGAFTGANTRRQGRFEQ-ADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEAL 283 (463)
T ss_pred hcCCCCCCCCCcccCCCCcEEE-CCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHH
Confidence 34432110 0000000111222 3467899999999999999999999974320 1235667777764310
Q ss_pred -chhhhhhhhhccCCcceEEeCCCC--HHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 289 -PERTLKGKVSSRMGLTRLMFKPYD--HHQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 289 -~~~~l~~~l~sR~~~~~i~~~~~~--~~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
....+...+..|+....|++||+. .+++..++..++... ..+++++++.|... .+.||+|...++++
T Consensus 284 ~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~ 361 (463)
T TIGR01818 284 VRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCR 361 (463)
T ss_pred HHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHH
Confidence 111234567778876679999998 688888888776543 46899999999887 79999999999999
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
+++.
T Consensus 362 ~~~~ 365 (463)
T TIGR01818 362 WLTV 365 (463)
T ss_pred HHHH
Confidence 9876
No 211
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=1.8e-10 Score=114.35 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=132.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-Ce---------EEEEEccccCCCh
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KF---------VYVEMNALSIPEP 209 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~---------~~i~v~~~~~~~~ 209 (520)
.++|++.....+.-.+ ..+..++++|.|++|+|||+++++++..+....+. +. .++..+|......
T Consensus 5 ~ivgq~~~~~al~~~~----~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 5 AIVGQDEMKLALLLNV----IDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred ccccHHHHHHHHHHHh----cCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 4688887776654333 33445789999999999999999999887321100 00 0000011100000
Q ss_pred HHHH---------HHHH-----HHHhcCCCChHHHHHHHHH---HHc----CCCCceEEEEcCCccccccChHHHHHHHH
Q psy17062 210 KRAY---------SRIL-----ELLLNVDAPPEQAKAMLER---HFT----RPHGPCVLLIDELDYLCNKRQDVIYNILE 268 (520)
Q Consensus 210 ~~~~---------~~i~-----~~l~g~~~~~~~~~~~l~~---~~~----~~~~~~vLiiDEid~l~~~~~~~L~~ll~ 268 (520)
+..+ ..+- ..+.|. ......+.. .|. ......+|||||++.+....|+.|+++++
T Consensus 81 ~~~~~~~~~~~~~~~lP~~~t~d~l~G~----~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~ 156 (337)
T TIGR02030 81 QEPLSIIKKPVPVVDLPLGATEDRVCGT----LDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA 156 (337)
T ss_pred ccccccccCCCCcCCCCCCCcccceecc----hhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence 0000 0000 001111 011111110 011 11345799999999999999999999986
Q ss_pred hcC----------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCH-HHHHHHHHHHHhC-----------
Q psy17062 269 YLN----------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDH-HQLQEIVQNRLKN----------- 326 (520)
Q Consensus 269 ~~~----------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~----------- 326 (520)
... ....++++|++.|..+ ..+.+.+..||... +.++.+.. +++.+|++.....
T Consensus 157 ~g~~~v~r~G~~~~~~~r~iviat~np~e---g~l~~~LldRf~l~-i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~ 232 (337)
T TIGR02030 157 SGWNVVEREGISIRHPARFVLVGSGNPEE---GELRPQLLDRFGLH-AEIRTVRDVELRVEIVERRTEYDADPHAFCEKW 232 (337)
T ss_pred hCCeEEEECCEEEEcCCCEEEEecccccc---CCCCHHHHhhcceE-EECCCCCCHHHHHHHHHhhhhcccCchhhhhhh
Confidence 421 1235788888777542 24677899999865 77777765 8888888773221
Q ss_pred -------------------CCCCCHHHHHHHHHHcCCCCC-CHHHHHHHHHhhhccCCCCceecccccchhhhhcccccc
Q psy17062 327 -------------------NNCFHPDAVQLVARLEPPTSR-SEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIG 386 (520)
Q Consensus 327 -------------------~~~~~~~~l~~la~~~~~~~G-~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~ 386 (520)
...++++.+++++..+..... ..|..+.+++.|.. .|.-.+.+.++.+++..
T Consensus 233 ~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA--------~Aal~GR~~V~~dDv~~ 304 (337)
T TIGR02030 233 QTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKA--------LAAFEGRTEVTVDDIRR 304 (337)
T ss_pred hhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH--------HHHHcCCCCCCHHHHHH
Confidence 045778888888887655444 36777666666554 35555666677766654
Q ss_pred c
Q psy17062 387 K 387 (520)
Q Consensus 387 a 387 (520)
+
T Consensus 305 ~ 305 (337)
T TIGR02030 305 V 305 (337)
T ss_pred H
Confidence 4
No 212
>PHA02244 ATPase-like protein
Probab=99.16 E-value=7.5e-10 Score=109.12 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
...+++....+......+...+..+ .++||+||+|||||++|+++++.+ +.+++.+++.. +.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~--d~-------- 156 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIM--DE-------- 156 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecCh--HH--------
Confidence 3446677777766666665554433 459999999999999999999998 88888887431 11
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhc--------CCCCCcEEEEEEEcCCCC-
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYL--------NKPKSRLIILCIANTMDL- 288 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~--------~~~~~~v~vI~~tn~~~~- 288 (520)
..+.|.. ....... -..++.....+.+|||||++.+....+..|..+++.. ...+.++.+|+++|....
T Consensus 157 ~~L~G~i-~~~g~~~-dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G 234 (383)
T PHA02244 157 FELKGFI-DANGKFH-ETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKG 234 (383)
T ss_pred Hhhcccc-ccccccc-chHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccC
Confidence 1111210 0000000 0001111147889999999999988888888888631 112467899999998431
Q ss_pred ------chhhhhhhhhccCCcceEEeCCCCH
Q psy17062 289 ------PERTLKGKVSSRMGLTRLMFKPYDH 313 (520)
Q Consensus 289 ------~~~~l~~~l~sR~~~~~i~~~~~~~ 313 (520)
-...+..++.+||.. |.|..++.
T Consensus 235 ~~~~y~G~k~L~~AllDRFv~--I~~dyp~~ 263 (383)
T PHA02244 235 ADHIYVARNKIDGATLDRFAP--IEFDYDEK 263 (383)
T ss_pred cccccCCCcccCHHHHhhcEE--eeCCCCcH
Confidence 123467889999964 88888773
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=2.5e-09 Score=105.13 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh----
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL---- 221 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~---- 221 (520)
...+++...+. .++.+..+||+||.|+||+++|+.+++.+......+ -.|..+.+ +..+.
T Consensus 10 ~~~~~l~~~~~---~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-----~~Cg~C~s--------C~~~~~g~H 73 (319)
T PRK06090 10 PVWQNWKAGLD---AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-----EACGFCHS--------CELMQSGNH 73 (319)
T ss_pred HHHHHHHHHHH---cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCHH--------HHHHHcCCC
Confidence 33444444433 345566799999999999999999999986542110 11222211 01100
Q ss_pred -----------cCCCChHHHHHHHHHHHcC-C--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 222 -----------NVDAPPEQAKAMLERHFTR-P--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 222 -----------g~~~~~~~~~~~l~~~~~~-~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
|.....+++.+ +...+.. . +...|+|||++|.|.....+.|+..|+++ ..++++|.+++..+
T Consensus 74 PD~~~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~ 149 (319)
T PRK06090 74 PDLHVIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLVTHNQK 149 (319)
T ss_pred CCEEEEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEEECChh
Confidence 11223333433 2223222 2 56789999999999999999999999965 55678888887755
Q ss_pred CchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 288 LPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 288 ~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
.+.+.+.|||.. +.|++++.+++.+.|...- ++ ....+++. +.|++..|+.++.
T Consensus 150 ----~lLpTI~SRCq~--~~~~~~~~~~~~~~L~~~~-----~~--~~~~~l~l---~~G~p~~A~~~~~ 203 (319)
T PRK06090 150 ----RLLPTIVSRCQQ--WVVTPPSTAQAMQWLKGQG-----IT--VPAYALKL---NMGSPLKTLAMMK 203 (319)
T ss_pred ----hChHHHHhccee--EeCCCCCHHHHHHHHHHcC-----Cc--hHHHHHHH---cCCCHHHHHHHhC
Confidence 356789999965 9999999999999886531 12 22345555 7788888877764
No 214
>PRK15115 response regulator GlrR; Provisional
Probab=99.15 E-value=1.4e-10 Score=121.45 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=138.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|....+.++.+.+.... .....++|+|++|+||+++|+.+.+..... +.+++.++|..+... . +-..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a--~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~~--~---~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA--QSDVSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPEQ--L---LESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc--cCCCeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCHH--H---HHHH
Confidence 46777777777666655532 334569999999999999999998865322 578999999987431 1 1223
Q ss_pred HhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCCch
Q psy17062 220 LLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDLPE 290 (520)
Q Consensus 220 l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~~~ 290 (520)
++|..... ..........+.. .....|||||++.|....|..|+.+++.... ...++.+|++++.. ...
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~-l~~ 282 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQA-AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD-LPK 282 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEE-CCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC-HHH
Confidence 33332110 0000000011222 3467999999999999999999999974321 11256788777642 221
Q ss_pred ----hhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 291 ----RTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 291 ----~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+...+..|+....|.+||+.. +++..++..+++.. ..+++++++.|... .+.||++...+++
T Consensus 283 ~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~WpgNvreL~~~i 360 (444)
T PRK15115 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA--SWPGNVRQLVNVI 360 (444)
T ss_pred HHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHH
Confidence 12345566777766789999866 57776767666542 34899999999886 5899999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
++++.
T Consensus 361 ~~~~~ 365 (444)
T PRK15115 361 EQCVA 365 (444)
T ss_pred HHHHH
Confidence 99875
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.13 E-value=2.5e-10 Score=120.14 Aligned_cols=209 Identities=18% Similarity=0.193 Sum_probs=139.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|....+..+.+.+.... ....+++++|++||||+++++.+....... +.+++.++|..+... .+-..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~~~i~c~~~~~~-----~~~~~ 213 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIA--LSQASVLISGESGTGKELIARAIHYNSRRA---KGPFIKVNCAALPES-----LLESE 213 (457)
T ss_pred ceecccHHHhHHHHHHHHHc--CCCcEEEEEcCCCccHHHHHHHHHHhCCCC---CCCeEEEECCCCCHH-----HHHHH
Confidence 46777777888777776643 344569999999999999999998754322 568999999987531 12234
Q ss_pred HhcCCCChH-HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC--
Q psy17062 220 LLNVDAPPE-QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL-- 288 (520)
Q Consensus 220 l~g~~~~~~-~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~-- 288 (520)
++|...... .....-...+.. ....+|||||++.|....|..|+.+++.... ...++.+|++++..-.
T Consensus 214 lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~ 292 (457)
T PRK11361 214 LFGHEKGAFTGAQTLRQGLFER-ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAM 292 (457)
T ss_pred hcCCCCCCCCCCCCCCCCceEE-CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHH
Confidence 444321100 000000011222 3567899999999999999999999874310 1235778888775311
Q ss_pred -chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 289 -PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 289 -~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
....+...+..|+....|.+||+.. +++..++..++... ..+++++++.+... .+.||++...+++.
T Consensus 293 ~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNv~eL~~~~~ 370 (457)
T PRK11361 293 VKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW--SWPGNIRELSNVIE 370 (457)
T ss_pred HHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC--CCCCcHHHHHHHHH
Confidence 0112344566777666788999874 66766666655542 46899999999876 68999999999999
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
++..
T Consensus 371 ~~~~ 374 (457)
T PRK11361 371 RAVV 374 (457)
T ss_pred HHHH
Confidence 9875
No 216
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.13 E-value=5.4e-10 Score=96.24 Aligned_cols=117 Identities=25% Similarity=0.342 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhC--CCeEEEEEccccCCChHHHHHHHHHHHhcCCCC---hHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIG--DKFVYVEMNALSIPEPKRAYSRILELLLNVDAP---PEQAKAMLERHF 238 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~--~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~---~~~~~~~l~~~~ 238 (520)
.++++|+|++|+|||++++.+++.+..... ....++++++....++..++..++.++...... .....+.+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 467999999999999999999999865321 146788999998889999999999998655433 333444444444
Q ss_pred cCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 239 TRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
... ...+|+|||+|.+. ....+..+..... ..++.+|.++++
T Consensus 84 ~~~-~~~~lviDe~~~l~--~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRR-RVVLLVIDEADHLF--SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHC-TEEEEEEETTHHHH--THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred Hhc-CCeEEEEeChHhcC--CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 443 33799999999985 3444444444433 556666666665
No 217
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.13 E-value=2e-10 Score=102.86 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++|.+..+.++.+.+..... .+.+|||+|++||||+.+|+++.+..... +.+|+.+||..+.. . .+-..|
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~~pVlI~GE~GtGK~~lA~~IH~~s~r~---~~pfi~vnc~~~~~-~----~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SDLPVLITGETGTGKELLARAIHNNSPRK---NGPFISVNCAALPE-E----LLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--STS-EEEECSTTSSHHHHHHHHHHCSTTT---TS-EEEEETTTS-H-H----HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC--CCCCEEEEcCCCCcHHHHHHHHHHhhhcc---cCCeEEEehhhhhc-c----hhhhhh
Confidence 57888999999999988643 44679999999999999999999854322 67999999998743 1 233556
Q ss_pred hcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCCch-
Q psy17062 221 LNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDLPE- 290 (520)
Q Consensus 221 ~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~~~- 290 (520)
+|..... ......-...|.. .....||||||+.|....|..|+++++... ....++.+|++|+.. +.+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~-A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~-l~~~ 148 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQ-ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD-LEEL 148 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHH-TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS--HHHH
T ss_pred hccccccccccccccCCceee-ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC-HHHH
Confidence 6653210 0000000012222 267899999999999999999999998431 113478889888752 221
Q ss_pred ---hhhhhhhhccCCc
Q psy17062 291 ---RTLKGKVSSRMGL 303 (520)
Q Consensus 291 ---~~l~~~l~sR~~~ 303 (520)
..+.+.|..|+..
T Consensus 149 v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 149 VEQGRFREDLYYRLNV 164 (168)
T ss_dssp HHTTSS-HHHHHHHTT
T ss_pred HHcCCChHHHHHHhce
Confidence 1234455556544
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.3e-09 Score=108.29 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=110.3
Q ss_pred hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-------------------CeEEEEEccccCC-----ChHHHHHH
Q psy17062 160 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-------------------KFVYVEMNALSIP-----EPKRAYSR 215 (520)
Q Consensus 160 ~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-------------------~~~~i~v~~~~~~-----~~~~~~~~ 215 (520)
.++.+..+||+||+|+||+++|+.+++.+...... ...+.++...... +....+..
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 34666789999999999999999999999764310 0111111110000 00000000
Q ss_pred HHHHHhc-------CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 216 ILELLLN-------VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 216 i~~~l~g-------~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
...+ .| .....+++.+... .+... +...|+|||++|.|.....+.|+..|+++ ..++++|.+|+.
T Consensus 97 ~~~~-~~~k~~~~~~~I~idqiR~l~~-~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~ 171 (342)
T PRK06964 97 DADE-GGKKTKAPSKEIKIEQVRALLD-FCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP---PPGTVFLLVSAR 171 (342)
T ss_pred hhhc-ccccccccccccCHHHHHHHHH-HhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC---CcCcEEEEEECC
Confidence 0000 01 1122333333322 22222 66789999999999999999999999954 567778888887
Q ss_pred CCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 286 MDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 286 ~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
.+ .+.+.+.|||.. |.|++++.+++.++|... . +++. +.++.. ..|++..|+.++.
T Consensus 172 ~~----~LLpTI~SRcq~--i~~~~~~~~~~~~~L~~~-~----~~~~--~~~l~~---~~Gsp~~Al~~~~ 227 (342)
T PRK06964 172 ID----RLLPTILSRCRQ--FPMTVPAPEAAAAWLAAQ-G----VADA--DALLAE---AGGAPLAALALAS 227 (342)
T ss_pred hh----hCcHHHHhcCEE--EEecCCCHHHHHHHHHHc-C----CChH--HHHHHH---cCCCHHHHHHHHC
Confidence 65 356788999964 999999999999988764 1 1221 223444 6788888887764
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.11 E-value=9.2e-11 Score=102.07 Aligned_cols=135 Identities=19% Similarity=0.321 Sum_probs=90.6
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
+|....++++.+.+.... ....+|+|+|++||||+++|+.++..-... ..+++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a--~~~~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~-------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA--KSSSPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP-------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH--CSSS-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC--------------
T ss_pred CCCCHHHHHHHHHHHHHh--CCCCcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc--------------
Confidence 477788899999998854 344569999999999999999999865322 3466667776643
Q ss_pred cCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC--CCc-hhhhhhhhh
Q psy17062 222 NVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM--DLP-ERTLKGKVS 298 (520)
Q Consensus 222 g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~--~~~-~~~l~~~l~ 298 (520)
.+.+.. ..+..|+|+|+|.|....|..|..+++... ..++.+|+++... ... ...+.+.+.
T Consensus 62 ---------~~~l~~-----a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~ 125 (138)
T PF14532_consen 62 ---------AELLEQ-----AKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLY 125 (138)
T ss_dssp ---------HHHHHH-----CTTSEEEEECGCCS-HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHH
T ss_pred ---------HHHHHH-----cCCCEEEECChHHCCHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHH
Confidence 111111 167799999999999999999999998654 3344556555432 211 234677888
Q ss_pred ccCCcceEEeCCC
Q psy17062 299 SRMGLTRLMFKPY 311 (520)
Q Consensus 299 sR~~~~~i~~~~~ 311 (520)
.|+....|.+||+
T Consensus 126 ~~l~~~~i~lPpL 138 (138)
T PF14532_consen 126 YRLSQLEIHLPPL 138 (138)
T ss_dssp HHCSTCEEEE---
T ss_pred HHhCCCEEeCCCC
Confidence 8998778999875
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8e-10 Score=105.16 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCceEEEEcCCccccccC------------hHHHHHHHHhcC-------CCCCcEEEEEEEcCCCCchhhhhhhhhccCC
Q psy17062 242 HGPCVLLIDELDYLCNKR------------QDVIYNILEYLN-------KPKSRLIILCIANTMDLPERTLKGKVSSRMG 302 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~------------~~~L~~ll~~~~-------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~ 302 (520)
....|+||||||.+.... |.-|+.+++... ....++.+|+++.-.-.-..-|.+.+..||.
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred HhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 456799999999997642 335778887542 2344677887553211111236788999997
Q ss_pred cceEEeCCCCHHHHHHHHHH----HHhCC----------CCCCHHHHHHHHHHcCCCCC-----CHHHHHHHHHhhh
Q psy17062 303 LTRLMFKPYDHHQLQEIVQN----RLKNN----------NCFHPDAVQLVARLEPPTSR-----SEIFCANHYTNEK 360 (520)
Q Consensus 303 ~~~i~~~~~~~~~~~~Il~~----~l~~~----------~~~~~~~l~~la~~~~~~~G-----~~r~al~~l~~a~ 360 (520)
++ +.+..++.++...||.. .++++ ..|++++++.||......+. .+|+...++....
T Consensus 329 IR-VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 329 IR-VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred eE-EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 54 99999999999998862 12221 67899999999887533222 3566666555543
No 221
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.10 E-value=6.3e-09 Score=96.16 Aligned_cols=176 Identities=18% Similarity=0.270 Sum_probs=122.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP-----EQAKAMLERHFT 239 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~-----~~~~~~l~~~~~ 239 (520)
+.+.++|+.|+|||.+++++...+... ....++++...+. ...+...++..+...+... ......+...+.
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s-~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLS-DATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchh-HHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 468999999999999999777766533 4555677766553 4555666666665533221 123344445555
Q ss_pred CCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc--hhhhhhhhhccCCcceEEeCCCCHHHHH
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP--ERTLKGKVSSRMGLTRLMFKPYDHHQLQ 317 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~--~~~l~~~l~sR~~~~~i~~~~~~~~~~~ 317 (520)
..+.|.++++||++.+..+..+.|.-+.+.-......+.++.++.+.-.. .......+..|+.++ |.++|++.++..
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir-~~l~P~~~~~t~ 206 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIR-IELPPLTEAETG 206 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEE-EecCCcChHHHH
Confidence 55788999999999999887777777766544445554444444432111 122346677888765 999999999999
Q ss_pred HHHHHHHhCC----CCCCHHHHHHHHHHcCCC
Q psy17062 318 EIVQNRLKNN----NCFHPDAVQLVARLEPPT 345 (520)
Q Consensus 318 ~Il~~~l~~~----~~~~~~~l~~la~~~~~~ 345 (520)
..|+++++.. ..++++++..+.....++
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~ 238 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGI 238 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccc
Confidence 9999999875 789999999999984443
No 222
>KOG1051|consensus
Probab=99.06 E-value=1.2e-09 Score=118.33 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=129.0
Q ss_pred hHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc--C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 124 PLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--S--TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 124 ~~~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~--~--~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
.+....+.|+. .++|+++.+..|.+.+..+..+ . +...++|.||.|+|||.+|+++|..+... .-.+|
T Consensus 552 ~l~~L~~~L~~-----~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~I 623 (898)
T KOG1051|consen 552 RLKKLEERLHE-----RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFI 623 (898)
T ss_pred HHHHHHHHHHh-----hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceE
Confidence 33444555544 4679999999999999997643 2 45689999999999999999999999665 67899
Q ss_pred EEccccCCChHHHHHHHHHHHhcCCCChH--HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC------
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVDAPPE--QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN------ 271 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~~~~~--~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------ 271 (520)
.++++++.. ..+++|.+..+. .....|...+.. +..+||+|||||..+...++.|+++++...
T Consensus 624 riDmse~~e--------vskligsp~gyvG~e~gg~Lteavrr-rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 624 RLDMSEFQE--------VSKLIGSPPGYVGKEEGGQLTEAVKR-RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred Eechhhhhh--------hhhccCCCcccccchhHHHHHHHHhc-CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCC
Confidence 999988754 455655543222 122223333222 578999999999999999999999998542
Q ss_pred --CCCCcEEEEEEEcCCCC------c--------------------------h----hhhhhhhhccCCcceEEeCCCCH
Q psy17062 272 --KPKSRLIILCIANTMDL------P--------------------------E----RTLKGKVSSRMGLTRLMFKPYDH 313 (520)
Q Consensus 272 --~~~~~v~vI~~tn~~~~------~--------------------------~----~~l~~~l~sR~~~~~i~~~~~~~ 313 (520)
....+++||.|+|.-.. . . ..+.+.|.+|+. ..+.|.+++.
T Consensus 695 r~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid-~i~lf~~l~~ 773 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRID-ELDLNLPLDR 773 (898)
T ss_pred cEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccc-eeeeecccch
Confidence 12357889998775110 0 0 112234445554 3478889999
Q ss_pred HHHHHHHHHHHhC
Q psy17062 314 HQLQEIVQNRLKN 326 (520)
Q Consensus 314 ~~~~~Il~~~l~~ 326 (520)
+++.+|....+..
T Consensus 774 ~~~~~i~~~~~~e 786 (898)
T KOG1051|consen 774 DELIEIVNKQLTE 786 (898)
T ss_pred hhHhhhhhhHHHH
Confidence 9888887766643
No 223
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.06 E-value=1.4e-09 Score=117.93 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=118.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHh--------------------------
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI-------------------------- 192 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~-------------------------- 192 (520)
..++|++..+..+.-.+ ..+..+++||.|++|||||++|+.+++.+....
T Consensus 4 ~~ivGq~~~~~al~~~a----v~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~ 79 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNA----VDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYR 79 (633)
T ss_pred chhcChHHHHHHHHHHh----hCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccc
Confidence 35788887665543332 333446799999999999999999998873100
Q ss_pred ---CCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHH-------HHcCCCCceEEEEcCCccccccChHH
Q psy17062 193 ---GDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLER-------HFTRPHGPCVLLIDELDYLCNKRQDV 262 (520)
Q Consensus 193 ---~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~-------~~~~~~~~~vLiiDEid~l~~~~~~~ 262 (520)
....+|+.+.+... ...++|.. .....+.. .+.......+|||||++.+....++.
T Consensus 80 ~~~~~~~pfv~~p~~~t----------~~~l~G~~----d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~ 145 (633)
T TIGR02442 80 PSEQRPVPFVNLPLGAT----------EDRVVGSL----DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDV 145 (633)
T ss_pred ccccCCCCeeeCCCCCc----------HHHcCCcc----cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHH
Confidence 00123444333221 11222210 01111110 00011355799999999999999999
Q ss_pred HHHHHHhcC----------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCC-HHHHHHHHHHHHhC-----
Q psy17062 263 IYNILEYLN----------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYD-HHQLQEIVQNRLKN----- 326 (520)
Q Consensus 263 L~~ll~~~~----------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~-~~~~~~Il~~~l~~----- 326 (520)
|+.+|+... ....++.+|+++|..+ ..+...+..||... |.++.+. .+++.+++...+..
T Consensus 146 Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e---g~l~~~L~dR~~l~-i~v~~~~~~~~~~~il~~~~~~~~~~~ 221 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE---GDLRPQLLDRFGLC-VDVAAPRDPEERVEIIRRRLAFDADPE 221 (633)
T ss_pred HHHHHhcCCEEEEECCceeeecCCeEEEEecCCCC---CCCCHHHHhhcceE-EEccCCCchHHHHHHHHHHHhhccCcH
Confidence 999997431 1235688999888543 23567888999755 6666554 46666666543210
Q ss_pred -------------------------CCCCCHHHHHHHHHHcCCCCC-CHHHHHHHHHhh
Q psy17062 327 -------------------------NNCFHPDAVQLVARLEPPTSR-SEIFCANHYTNE 359 (520)
Q Consensus 327 -------------------------~~~~~~~~l~~la~~~~~~~G-~~r~al~~l~~a 359 (520)
...++++.+++|+..+....- ..|..+.+++.|
T Consensus 222 ~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 222 AFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 145678888888887654333 355555555544
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.05 E-value=1.3e-09 Score=116.66 Aligned_cols=182 Identities=16% Similarity=0.101 Sum_probs=116.2
Q ss_pred hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHH---
Q psy17062 160 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLER--- 236 (520)
Q Consensus 160 ~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~--- 236 (520)
-++..++|||.|++|||||++++.+++.+.. ..+|+.+.+... -..+.|.- .+...+..
T Consensus 12 v~p~~g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~t----------~d~L~G~i----dl~~~~~~g~~ 73 (589)
T TIGR02031 12 VDPSLGGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGVT----------EDRLIGGI----DVEESLAGGQR 73 (589)
T ss_pred cCCCcceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCcccc----------hhhcccch----hhhhhhhcCcc
Confidence 3444678999999999999999999997632 235777764211 12222220 01111110
Q ss_pred HHc----CCCCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcEEEEEEEcCCCCchhhhhhhhhccCC
Q psy17062 237 HFT----RPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRLIILCIANTMDLPERTLKGKVSSRMG 302 (520)
Q Consensus 237 ~~~----~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~ 302 (520)
.+. ......+|||||++.+....++.|+++|+... ....++.||+++|..+. ...+.+.+..||.
T Consensus 74 ~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~-~g~L~~~LldRf~ 152 (589)
T TIGR02031 74 VTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG-GGGLPDHLLDRLA 152 (589)
T ss_pred cCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc-cCCCCHHHHHhcc
Confidence 011 01345799999999999999999999997432 11256889998887642 2346788999998
Q ss_pred cceEEeCCCCHHHHHHHHHHHHhC------------------------CCCCCHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q psy17062 303 LTRLMFKPYDHHQLQEIVQNRLKN------------------------NNCFHPDAVQLVARLEPPTSRS-EIFCANHYT 357 (520)
Q Consensus 303 ~~~i~~~~~~~~~~~~Il~~~l~~------------------------~~~~~~~~l~~la~~~~~~~G~-~r~al~~l~ 357 (520)
++.....+++.+++.+|++..+.. ...++++.+++|+..+...... .|..+.+++
T Consensus 153 l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r 232 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVR 232 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 753444455677778888765410 0567888888888877554333 566665555
Q ss_pred hhh
Q psy17062 358 NEK 360 (520)
Q Consensus 358 ~a~ 360 (520)
.|.
T Consensus 233 ~Ar 235 (589)
T TIGR02031 233 AAK 235 (589)
T ss_pred HHH
Confidence 543
No 225
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.04 E-value=4.4e-10 Score=93.58 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---C
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---H 242 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~ 242 (520)
++||.|+||+|||++|+++|+.+ +..+..|.+..... -+.+.|........ ..|.-. -
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdll--------PsDi~G~~v~~~~~-----~~f~~~~GPi 61 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLL--------PSDILGFPVYDQET-----GEFEFRPGPI 61 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT----------HHHHHEEEEEETTT-----TEEEEEE-TT
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCC--------cccceeeeeeccCC-----CeeEeecChh
Confidence 58999999999999999999998 77787787754332 34444432110000 011000 1
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCCch-hhhhhhhhccC
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDLPE-RTLKGKVSSRM 301 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~~~-~~l~~~l~sR~ 301 (520)
-..|+++|||+...++.|+.|++++.+.. ....++.||++.|+.+... +.+..++..||
T Consensus 62 f~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 62 FTNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp -SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred hhceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 23599999999999999999999997542 1244688999999876543 33567777777
No 226
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.99 E-value=5.7e-09 Score=103.33 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=103.3
Q ss_pred hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC---hHHHHHHHHHH---------------Hh
Q psy17062 160 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE---PKRAYSRILEL---------------LL 221 (520)
Q Consensus 160 ~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~---~~~~~~~i~~~---------------l~ 221 (520)
-...-+++||.|+.|+||||++++++..|.. ..+| ..|.-..+ |......+..+ +.
T Consensus 34 v~P~iggvLI~G~kGtaKSt~~Rala~LLp~-----~~~V-~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v 107 (423)
T COG1239 34 VDPQIGGALIAGEKGTAKSTLARALADLLPE-----IEVV-IGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFV 107 (423)
T ss_pred cccccceeEEecCCCccHHHHHHHHHHhCCc-----ccee-cCCCCCCCCCChhhhhHHHHhhccccccccccceeccee
Confidence 3455578999999999999999999999843 2222 25533333 32222322222 11
Q ss_pred cCCCC--hH------HHHHHHHH---HHcCC----CCceEEEEcCCccccccChHHHHHHHHhc----------CCCCCc
Q psy17062 222 NVDAP--PE------QAKAMLER---HFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYL----------NKPKSR 276 (520)
Q Consensus 222 g~~~~--~~------~~~~~l~~---~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~----------~~~~~~ 276 (520)
+.+.. .+ ...+.+.. .|.-. ....||+|||++.|...-++.|++.+... .....+
T Consensus 108 ~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~ 187 (423)
T COG1239 108 ALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPAR 187 (423)
T ss_pred cCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCcc
Confidence 11110 00 12222222 11111 56789999999999999999999999752 134678
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN 326 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~ 326 (520)
+++|++.|+.+ ..|.++|..||+...-.-++.+.+++.+|+.+.+..
T Consensus 188 fvligTmNPEe---GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 188 FLLIGTMNPEE---GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred EEEEeecCccc---cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 99999999873 347789999998764445556789999999987763
No 227
>PRK08116 hypothetical protein; Validated
Probab=98.98 E-value=4e-09 Score=102.04 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC
Q psy17062 147 EFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 147 ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~ 225 (520)
.+....+++...... ..+.+++|+|++|+|||+|+.++++.+... +.++++++..++ +..+...+.+..
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~l------l~~i~~~~~~~~- 165 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQL------LNRIKSTYKSSG- 165 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHH------HHHHHHHHhccc-
Confidence 344455555543221 233469999999999999999999999765 567788876543 222222221110
Q ss_pred ChHHHHHHHHHHHcCCCCceEEEEcCCc--cccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC-CchhhhhhhhhccCC
Q psy17062 226 PPEQAKAMLERHFTRPHGPCVLLIDELD--YLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSRMG 302 (520)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~vLiiDEid--~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR~~ 302 (520)
......+...+ ....+|||||++ ......++.|+.+++... .....+|.+||... .+...+..++.+|+.
T Consensus 166 --~~~~~~~~~~l---~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~--~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~ 238 (268)
T PRK08116 166 --KEDENEIIRSL---VNADLLILDDLGAERDTEWAREKVYNIIDSRY--RKGLPTIVTTNLSLEELKNQYGKRIYDRIL 238 (268)
T ss_pred --cccHHHHHHHh---cCCCEEEEecccCCCCCHHHHHHHHHHHHHHH--HCCCCEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 00111122222 356799999995 444456778889998653 22334666777642 111123556777741
Q ss_pred --cceEEeCCCCHHHHHHHHHHHH
Q psy17062 303 --LTRLMFKPYDHHQLQEIVQNRL 324 (520)
Q Consensus 303 --~~~i~~~~~~~~~~~~Il~~~l 324 (520)
...|.|...+. +..+.+.++
T Consensus 239 e~~~~v~~~g~d~--R~~~~~ek~ 260 (268)
T PRK08116 239 EMCTPVENEGKSY--RKEIAKEKL 260 (268)
T ss_pred HcCEEEEeeCcCh--hHHHHHHHH
Confidence 12477776554 444444443
No 228
>KOG0727|consensus
Probab=98.98 E-value=7.2e-10 Score=101.27 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=29.4
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...+++.||.|+|||||||||||+||||+|+.
T Consensus 180 ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred HHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 445577899999999999999999999999974
No 229
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=1.3e-08 Score=91.12 Aligned_cols=150 Identities=16% Similarity=0.324 Sum_probs=88.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCC---eEEEEEccccCCChH---HHHHHHHHHHhcCCCChHHHHHHHHHHHc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDK---FVYVEMNALSIPEPK---RAYSRILELLLNVDAPPEQAKAMLERHFT 239 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~---~~~i~v~~~~~~~~~---~~~~~i~~~l~g~~~~~~~~~~~l~~~~~ 239 (520)
.++|+|++|+|||++++.++..+....... ..++++.+....... .+...+...+.... ......+ ..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~-~~~~ 77 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELL-QELL 77 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHH-HHHH
Confidence 489999999999999999999988765332 234456665554332 23333333332211 1111111 1222
Q ss_pred CCCCceEEEEcCCccccccChH--------HHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCC
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQD--------VIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~~--------~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~ 311 (520)
......+||||.+|.+...... .|..++... ...++.+|.++++..... +...+ ... ..+.+.++
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~~~~--~~~~~-~~~--~~~~l~~~ 150 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--LPPGVKLIITSRPRAFPD--LRRRL-KQA--QILELEPF 150 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCChHHH--HHHhc-CCC--cEEEECCC
Confidence 2357889999999999875433 344444431 133455665665543221 11121 111 35999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy17062 312 DHHQLQEIVQNRLKN 326 (520)
Q Consensus 312 ~~~~~~~Il~~~l~~ 326 (520)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988764
No 230
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.94 E-value=2.6e-09 Score=111.86 Aligned_cols=209 Identities=12% Similarity=0.129 Sum_probs=137.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|....+..+...+... ......++|+|.+|+||+++++++....... ..+++.++|..... . . +-..
T Consensus 140 ~lig~s~~~~~~~~~i~~~--~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~c~~~~~-~-~---~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV--APSEATVLIHGDSGTGKELVARAIHASSARS---EKPLVTLNCAALNE-S-L---LESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhc--cCCCCeEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeeeCCCCCH-H-H---HHHH
Confidence 3567777677666665442 3445679999999999999999998765322 57899999997652 1 1 1233
Q ss_pred HhcCCCChH-HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC--
Q psy17062 220 LLNVDAPPE-QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL-- 288 (520)
Q Consensus 220 l~g~~~~~~-~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~-- 288 (520)
++|...... .....-...+.. ..+.+||||||+.|....|..|+.+++.... ....+.+|++++....
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~-a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~ 288 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE-ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE 288 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE-CCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHH
Confidence 334321100 000000001111 3578899999999999999999998874321 1124567777765321
Q ss_pred -chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 289 -PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 289 -~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
....+...+..|+....|.+||+.. +++..++..++... ..+++++++.|... .+.||+|.+.++++
T Consensus 289 ~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgN~reL~~~~~ 366 (441)
T PRK10365 289 VNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY--DWPGNIRELENAVE 366 (441)
T ss_pred HHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCCHHHHHHHHHH
Confidence 0112445566777666788999865 57777777666542 34899999999876 58999999999999
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
+++.
T Consensus 367 ~~~~ 370 (441)
T PRK10365 367 RAVV 370 (441)
T ss_pred HHHH
Confidence 9875
No 231
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=5.7e-09 Score=90.39 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-- 241 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-- 241 (520)
+.+++|+||||||||++++.++..+... ...++++++............ ................+...+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999998432 224788888765432211110 001111111111112222222222
Q ss_pred CCceEEEEcCCccccccChHHHHHH-----HHhcCCCCCcEEEEEEEcC
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNI-----LEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~l-----l~~~~~~~~~v~vI~~tn~ 285 (520)
..+.+|||||++.+........... ............+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 2369999999999988765544332 1111123556788888885
No 232
>PRK12377 putative replication protein; Provisional
Probab=98.94 E-value=4.2e-09 Score=100.06 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC
Q psy17062 147 EFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP 226 (520)
Q Consensus 147 ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~ 226 (520)
.+.....+...... ...+++|+|+||||||+|+.++++.+... +..+++++..++ +..+-..+...
T Consensus 86 a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~l------~~~l~~~~~~~--- 151 (248)
T PRK12377 86 ALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPDV------MSRLHESYDNG--- 151 (248)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHHH------HHHHHHHHhcc---
Confidence 44444445444322 23679999999999999999999999765 566677766543 22222211110
Q ss_pred hHHHHHHHHHHHcCCCCceEEEEcCCccc--cccChHHHHHHHHhcCCCCCcEEEEEEEcCCC-CchhhhhhhhhccCCc
Q psy17062 227 PEQAKAMLERHFTRPHGPCVLLIDELDYL--CNKRQDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSRMGL 303 (520)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~vLiiDEid~l--~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR~~~ 303 (520)
... ...+.......+|||||++.. ....++.|+++++... .....+|.+||... .+...+..++.+|+..
T Consensus 152 --~~~---~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~--~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~ 224 (248)
T PRK12377 152 --QSG---EKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT--ASMRSVGMLTNLNHEAMSTLLGERVMDRMTM 224 (248)
T ss_pred --chH---HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH--hcCCCEEEEcCCCHHHHHHHhhHHHHHHHhh
Confidence 011 122222257889999999544 4456778999998653 22344566777532 1222344566666631
Q ss_pred ---ceEEeCCC
Q psy17062 304 ---TRLMFKPY 311 (520)
Q Consensus 304 ---~~i~~~~~ 311 (520)
..|.|.-.
T Consensus 225 ~~~~~v~~~g~ 235 (248)
T PRK12377 225 NGGRWVNFNWE 235 (248)
T ss_pred CCCeEEEeCCc
Confidence 23555543
No 233
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.93 E-value=7.7e-09 Score=99.23 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=138.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.+++....++.+.+.-..... .-..+||.|..||||-.+|++....-... ..+|+.+||..+.+... -+
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Am--lDAPLLI~GeTGTGKdLlAkaCH~~S~R~---~~pFlalNCA~lPe~~a-----Es 273 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAM--LDAPLLITGETGTGKDLLAKACHLASPRH---SKPFLALNCASLPEDAA-----ES 273 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhc--cCCCeEEecCCCchHHHHHHHHhhcCccc---CCCeeEeecCCCchhHh-----HH
Confidence 4577777777766665554322 22449999999999999999877654333 67899999999875321 24
Q ss_pred HHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCCCch
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~~~~ 290 (520)
.++|........ ...|+. ....-+|+|||..|++.-|.-|+.++.... .....|-|||+|... +.+
T Consensus 274 ElFG~apg~~gk----~GffE~-AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~n-L~~ 347 (511)
T COG3283 274 ELFGHAPGDEGK----KGFFEQ-ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVN-LVE 347 (511)
T ss_pred HHhcCCCCCCCc----cchhhh-ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccccc-HHH
Confidence 455543321111 123333 356678999999999999999999996432 123468889877652 221
Q ss_pred ----hhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhC----C----CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 291 ----RTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKN----N----NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 291 ----~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~----~----~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+...+..|+.+-.+++||+.+ +++.-+.+..+.+ . +.++++.+.++.+. ++.|++|+.-+.+
T Consensus 348 lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y--~WpGNVRqL~N~i 425 (511)
T COG3283 348 LVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY--AWPGNVRQLKNAI 425 (511)
T ss_pred HHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc--CCCccHHHHHHHH
Confidence 22345566788776788888855 4444444444333 2 78899999999876 7999999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
-+|..
T Consensus 426 yRA~s 430 (511)
T COG3283 426 YRALT 430 (511)
T ss_pred HHHHH
Confidence 88875
No 234
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.93 E-value=2.5e-09 Score=114.75 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=86.6
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcC------------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCC-
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLN------------------KPKSRLIILCIANTMDLPERTLKGKVSSRMG- 302 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~- 302 (520)
....+|||||++.|....|..|..+|+... ....++.+|+++|.... . .+++.|.+||.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l-~-~l~~~l~~rf~~ 293 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL-E-GMHPALRSRIRG 293 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH-h-hcCHHHHHHhcC
Confidence 345799999999999888899999886321 11346788998886422 1 35778888987
Q ss_pred --cceEEeCC---CCHHHHHHHHHH---HHhC---CCCCCHHHHHHHHHHcCC-------CCCCHHHHHHHHHhhhccCC
Q psy17062 303 --LTRLMFKP---YDHHQLQEIVQN---RLKN---NNCFHPDAVQLVARLEPP-------TSRSEIFCANHYTNEKKSKS 364 (520)
Q Consensus 303 --~~~i~~~~---~~~~~~~~Il~~---~l~~---~~~~~~~~l~~la~~~~~-------~~G~~r~al~~l~~a~~~~~ 364 (520)
.. +.|+. .+.+.+.++++. .++. ...+++++++.+.+.+.+ .+...|..-++++.|..
T Consensus 294 y~v~-v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~--- 369 (608)
T TIGR00764 294 YGYE-VYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGD--- 369 (608)
T ss_pred CeEE-EEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHH---
Confidence 43 44433 345555444443 3332 267899999988765432 23458888888888754
Q ss_pred CCceecccccchhhhhccccccc
Q psy17062 365 KYWDWVSSSSDEEEKEENHVIGK 387 (520)
Q Consensus 365 ~~~~~~a~~~~~~~~~~~~v~~a 387 (520)
.+...+...++.+|+..|
T Consensus 370 -----iA~~~~~~~I~~ehV~~A 387 (608)
T TIGR00764 370 -----IAKSSGKVYVTAEHVLKA 387 (608)
T ss_pred -----HHHhcCCceecHHHHHHH
Confidence 232334455666666554
No 235
>PF13173 AAA_14: AAA domain
Probab=98.92 E-value=3.8e-09 Score=90.59 Aligned_cols=125 Identities=15% Similarity=0.253 Sum_probs=77.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGP 244 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~ 244 (520)
..++|+||.|||||++++.+++.+.. ...++++++.+......... . ..+.+.+.+. ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~----~~~~~yi~~~~~~~~~~~~~-------------~-~~~~~~~~~~--~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP----PENILYINFDDPRDRRLADP-------------D-LLEYFLELIK--PGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc----cccceeeccCCHHHHHHhhh-------------h-hHHHHHHhhc--cCC
Confidence 56899999999999999999998741 35678888766432110000 0 1111111111 267
Q ss_pred eEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHH
Q psy17062 245 CVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQL 316 (520)
Q Consensus 245 ~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~ 316 (520)
.+|||||++.+. .-...+..+.+. ..++.+|++++............+..|.. .+++.|++..|.
T Consensus 63 ~~i~iDEiq~~~-~~~~~lk~l~d~----~~~~~ii~tgS~~~~l~~~~~~~l~gr~~--~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLP-DWEDALKFLVDN----GPNIKIILTGSSSSLLSKDIAESLAGRVI--EIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhc-cHHHHHHHHHHh----ccCceEEEEccchHHHhhcccccCCCeEE--EEEECCCCHHHh
Confidence 899999999995 334455555552 23455555555544333233456777764 499999998764
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.6e-08 Score=98.90 Aligned_cols=143 Identities=16% Similarity=0.252 Sum_probs=94.6
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-------------------CeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-------------------KFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-------------------~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
++.+..+||+||+|+|||++|+.+++.+...... ...++++....-... .
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~-----------~ 86 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE-----------N 86 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc-----------c
Confidence 4556779999999999999999999998653210 122333332110000 0
Q ss_pred c---CCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhh
Q psy17062 222 N---VDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGK 296 (520)
Q Consensus 222 g---~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~ 296 (520)
| .....+++.+......... ....|++||+++.|....++.|+.+++.+. ..+.+|.+++..+ .+.+.
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~---~~~~~Ilvth~~~----~ll~t 159 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP---PQVVFLLVSHAAD----KVLPT 159 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc---CCCEEEEEeCChH----hChHH
Confidence 1 0122333333332222222 567899999999999999999999999763 2455666777655 35567
Q ss_pred hhccCCcceEEeCCCCHHHHHHHHHHH
Q psy17062 297 VSSRMGLTRLMFKPYDHHQLQEIVQNR 323 (520)
Q Consensus 297 l~sR~~~~~i~~~~~~~~~~~~Il~~~ 323 (520)
+.|||.. +.|++++.++..+.|...
T Consensus 160 i~SRc~~--~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 160 IKSRCRK--MVLPAPSHEEALAYLRER 184 (325)
T ss_pred HHHHhhh--hcCCCCCHHHHHHHHHhc
Confidence 8899966 999999999999888653
No 237
>KOG1968|consensus
Probab=98.90 E-value=5.1e-09 Score=114.59 Aligned_cols=198 Identities=17% Similarity=0.240 Sum_probs=138.8
Q ss_pred CCchHHHHHHHHHHHHHHhhc----------C-CCC-eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 141 LPCREAEFQSIHRFLLSKISQ----------S-TTG-CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~----------~-~~~-~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
+.|-......+..+|...... . ... .++++|+||+|||+.+..+++.+ ++.+++.|+....+
T Consensus 322 ~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~------g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 322 LEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL------GFKVVEKNASDVRS 395 (871)
T ss_pred hhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc------ccceeecCcccccc
Confidence 344444455677777665111 0 011 36999999999999999999999 99999999999998
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
...+...+......+. +.... ..+... ....||++||+|-+...+...+..+..... .....+|+++|
T Consensus 396 k~~l~~~~~~~~~s~s-----i~~~~-~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cn 467 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHS-----IKGSK-KKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCN 467 (871)
T ss_pred ccHHHhhhhccccccc-----hhhhh-cccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccCCeEEEec
Confidence 8888777655443321 11111 111111 345599999999999955444444333222 45667888889
Q ss_pred CCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 285 TMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 285 ~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+.+...- +.+.+-| ..++|+.|+...+..-|...+... ..+++..++.+... +.||+|..++.++...
T Consensus 468 dr~~p~s---r~~~~~~--~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~---~~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 468 DRNLPKS---RALSRAC--SDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL---SGGDIRQIIMQLQFWS 536 (871)
T ss_pred CCCCccc---cchhhhc--ceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh---cccCHHHHHHHHhhhh
Confidence 8876542 2333333 239999999999999999888765 67899999999998 7999999999998773
No 238
>KOG0741|consensus
Probab=98.89 E-value=1.7e-08 Score=101.48 Aligned_cols=169 Identities=14% Similarity=0.231 Sum_probs=112.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-- 241 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-- 241 (520)
-.++||+||||+|||+||..+|..- +++||.+-..+. +.|- +...-...+.+.|..+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~-------------miG~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPED-------------MIGL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHH-------------ccCc--cHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999876 899998755432 2232 1222345566777777
Q ss_pred CCceEEEEcCCccccccC------hHH----HHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCC
Q psy17062 242 HGPCVLLIDELDYLCNKR------QDV----IYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~------~~~----L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~ 311 (520)
....||++|+++.|.... .+. |.-+|........++.|++||...+.+... .+..-|+ ..|++|.+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m---~i~~~F~-~~i~Vpnl 672 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM---GILDCFS-STIHVPNL 672 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc---CHHHhhh-heeecCcc
Confidence 567899999999997652 233 333344333345578888888776544321 2223343 45999999
Q ss_pred CH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCC--CCCHHHHHHHHHhhhc
Q psy17062 312 DH-HQLQEIVQNRLKNNNCFHPDAVQLVARLEPPT--SRSEIFCANHYTNEKK 361 (520)
Q Consensus 312 ~~-~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~--~G~~r~al~~l~~a~~ 361 (520)
+. ++..++|.. ...++++.++.++....+. .-.+.+.+.+++.|..
T Consensus 673 ~~~~~~~~vl~~----~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 673 TTGEQLLEVLEE----LNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred CchHHHHHHHHH----ccCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 87 777776653 2667888888888775542 2236777777777755
No 239
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.2e-07 Score=92.65 Aligned_cols=172 Identities=9% Similarity=0.080 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC-------CCeEEEEEccccCCChHHHHHHHHHHHhc
Q psy17062 151 IHRFLLSKISQS-TTGCMYISGVPGTGKTATVHAVMRKLKQEIG-------DKFVYVEMNALSIPEPKRAYSRILELLLN 222 (520)
Q Consensus 151 l~~~L~~~~~~~-~~~~lLl~G~~GtGKT~la~~la~~l~~~~~-------~~~~~i~v~~~~~~~~~~~~~~i~~~l~g 222 (520)
+...|...+..+ -+...||+|+.|+||+.+++.+++.+.+... ....++.++.. |
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-----------------g 66 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-----------------D 66 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-----------------C
Confidence 344555555554 4455669999999999999999999844210 01123333310 1
Q ss_pred CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhc
Q psy17062 223 VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSS 299 (520)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~s 299 (520)
.....+++.+.....-... +...|+|||++|.+....++.|+..|+.+ ...+++|.+++..+ .+.+.+.|
T Consensus 67 ~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP---p~~t~~il~~~~~~----kll~TI~S 139 (299)
T PRK07132 67 KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP---PKDTYFLLTTKNIN----KVLPTIVS 139 (299)
T ss_pred CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCC---CCCeEEEEEeCChH----hChHHHHh
Confidence 1122233333333332222 47889999999999988888899999864 55667777776442 35667899
Q ss_pred cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 300 RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 300 R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
||.. +.|.+++.+++.+.|... .++++....++.. .|++.+|+.++.
T Consensus 140 Rc~~--~~f~~l~~~~l~~~l~~~-----~~~~~~a~~~a~~----~~~~~~a~~~~~ 186 (299)
T PRK07132 140 RCQV--FNVKEPDQQKILAKLLSK-----NKEKEYNWFYAYI----FSNFEQAEKYIN 186 (299)
T ss_pred CeEE--EECCCCCHHHHHHHHHHc-----CCChhHHHHHHHH----cCCHHHHHHHHh
Confidence 9965 999999999999887754 1455555566654 335777777654
No 240
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87 E-value=1e-08 Score=101.57 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=83.4
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH
Q psy17062 151 IHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA 230 (520)
Q Consensus 151 l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 230 (520)
...++..... ...+++|+|++|+|||+|+.++++++... +..++++++.++. ..+....... ....
T Consensus 172 ~~~f~~~f~~--~~~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l~------~~l~~~~~~~---~~~~ 237 (329)
T PRK06835 172 CKNFIENFDK--NNENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADELI------EILREIRFNN---DKEL 237 (329)
T ss_pred HHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHHH------HHHHHHHhcc---chhH
Confidence 3345554322 33779999999999999999999999766 6788888876542 1111110010 0011
Q ss_pred HHHHHHHHcCCCCceEEEEcCCccccc--cChHHHHHHHHhcCCCCCcEEEEEEEcCCC-CchhhhhhhhhccCCc--ce
Q psy17062 231 KAMLERHFTRPHGPCVLLIDELDYLCN--KRQDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSRMGL--TR 305 (520)
Q Consensus 231 ~~~l~~~~~~~~~~~vLiiDEid~l~~--~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR~~~--~~ 305 (520)
...+..+ ....+|||||+..... ..++.|+.+++...... -.+|.+||... .+...+..++.+|+.. ..
T Consensus 238 ~~~~~~l----~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~--k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~ 311 (329)
T PRK06835 238 EEVYDLL----INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQ--KKMIISTNLSLEELLKTYSERISSRLLGNFTL 311 (329)
T ss_pred HHHHHHh----ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHHHhHHHHHHHHcCCEE
Confidence 1112222 4678999999976644 35677888988653222 23555677532 2222245567777632 34
Q ss_pred EEeCCCC
Q psy17062 306 LMFKPYD 312 (520)
Q Consensus 306 i~~~~~~ 312 (520)
|.|..-+
T Consensus 312 i~~~G~d 318 (329)
T PRK06835 312 LKFYGED 318 (329)
T ss_pred EEecCcC
Confidence 6665444
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.2e-07 Score=91.57 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=95.5
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----------CeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----------KFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA 230 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----------~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 230 (520)
+.-+..+||+||.|+||+++|..+++.+.+.... ...+..+.... . +.....+++
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~--------------~~~I~idqi 80 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-K--------------GRLHSIETP 80 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-C--------------CCcCcHHHH
Confidence 3456678899999999999999999998653210 11121221100 0 001122223
Q ss_pred HHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEe
Q psy17062 231 KAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMF 308 (520)
Q Consensus 231 ~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~ 308 (520)
.+......... +...|+|||++|.|....++.|+.+|+++ ..++++|.+++..+ .+.+.+.|||+. +.|
T Consensus 81 R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP---p~~~~fiL~~~~~~----~ll~TI~SRcq~--~~~ 151 (290)
T PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP---PQHGVIILTSAKPQ----RLPPTIRSRSLS--IHI 151 (290)
T ss_pred HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC---CCCeEEEEEeCChh----hCcHHHHhcceE--EEc
Confidence 22222222222 66789999999999999999999999965 55777777777655 356788999966 999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCH
Q psy17062 309 KPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSE 349 (520)
Q Consensus 309 ~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~ 349 (520)
+++.. ..++++....++.. ..|++
T Consensus 152 ~~~~~--------------~~i~~~~~~~l~~~---~~g~~ 175 (290)
T PRK05917 152 PMEEK--------------TLVSKEDIAYLIGY---AQGKE 175 (290)
T ss_pred cchhc--------------cCCCHHHHHHHHHH---hCCCh
Confidence 88621 13567777777776 44544
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.86 E-value=2e-08 Score=97.20 Aligned_cols=161 Identities=15% Similarity=0.266 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh
Q psy17062 148 FQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP 227 (520)
Q Consensus 148 i~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~ 227 (520)
-.+...++...+.. ..++||+||+|||||++++.+.+.+... ......++++..++...+ ..+.....
T Consensus 19 t~r~~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~-----q~~ie~~l-- 86 (272)
T PF12775_consen 19 TVRYSYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQL-----QKIIESKL-- 86 (272)
T ss_dssp HHHHHHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHH-----HHCCCTTE--
T ss_pred HHHHHHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHH-----HHHHhhcE--
Confidence 33444455544443 4569999999999999999988765322 334556666554432211 11110000
Q ss_pred HHHHHHHHHHHcCC-CCceEEEEcCCccccccC------hHHHHHHHHh---cCCC------CCcEEEEEEEcCCCCchh
Q psy17062 228 EQAKAMLERHFTRP-HGPCVLLIDELDYLCNKR------QDVIYNILEY---LNKP------KSRLIILCIANTMDLPER 291 (520)
Q Consensus 228 ~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~------~~~L~~ll~~---~~~~------~~~v~vI~~tn~~~~~~~ 291 (520)
...-...+.-. ++..|+||||++.-..+. .+.|.++++. +... -.++.+|+++++... ..
T Consensus 87 ---~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G-r~ 162 (272)
T PF12775_consen 87 ---EKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG-RN 162 (272)
T ss_dssp ---CECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT---
T ss_pred ---EcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC-CC
Confidence 00000001001 567899999999877653 3567788863 2221 136778888886432 23
Q ss_pred hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC
Q psy17062 292 TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN 326 (520)
Q Consensus 292 ~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~ 326 (520)
.+.+||.++|.+ +.++.|+.+.+..|+...+..
T Consensus 163 ~is~R~~r~f~i--~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 163 PISPRFLRHFNI--LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp SHHHHHHTTEEE--EE----TCCHHHHHHHHHHHH
T ss_pred CCChHHhhheEE--EEecCCChHHHHHHHHHHHhh
Confidence 478899999865 999999999999999888764
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=6.6e-09 Score=111.11 Aligned_cols=71 Identities=46% Similarity=0.742 Sum_probs=64.1
Q ss_pred CChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcE-EEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 446 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCM-YISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-LLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
..++..++..|+.+++|+.++||+.++..|..++...+....+.++ ++||+||||||++++.|.++|+++.
T Consensus 738 ~~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeea 809 (1164)
T PTZ00112 738 TDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKT 809 (1164)
T ss_pred CChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999986666665 6999999999999999999998764
No 244
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.85 E-value=1.4e-08 Score=107.50 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=100.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE---ccccCC
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ--------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM---NALSIP 207 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~--------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v---~~~~~~ 207 (520)
..++|++.....+.-.+...... ....++||+|+||+|||++++.+++.... ..++.. ++..++
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r-----~~~~~~~~~~~~~l~ 277 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR-----AVYTTGKGSSAVGLT 277 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc-----ceEcCCCCCCcCCcc
Confidence 35778877654444444331100 11137999999999999999999987521 122211 111111
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcE
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRL 277 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v 277 (520)
. ... .....|. ..++..........+|+|||++.+....+..|+.+|+... ....++
T Consensus 278 ~--~~~---~~~~~g~--------~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 278 A--AVT---RDPETRE--------FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred c--cce---EccCcce--------EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 0 000 0000000 0000000011456799999999999999999999997432 123578
Q ss_pred EEEEEEcCCCCch---------hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHH
Q psy17062 278 IILCIANTMDLPE---------RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRL 324 (520)
Q Consensus 278 ~vI~~tn~~~~~~---------~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l 324 (520)
.||+++|+..... ..+.+.+.+||+...+.+..++.+...+|+++.+
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 8999999864311 1367889999987667778888888888877643
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=2.2e-08 Score=94.98 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC
Q psy17062 147 EFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP 226 (520)
Q Consensus 147 ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~ 226 (520)
.+..+.++.... . ....+++|+|++|||||+|+.++++.+... +..+++++..++ +..+-..+...
T Consensus 84 al~~a~~~~~~~-~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~l------~~~l~~~~~~~--- 149 (244)
T PRK07952 84 ALSKARQYVEEF-D-GNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVADI------MSAMKDTFSNS--- 149 (244)
T ss_pred HHHHHHHHHHhh-c-cCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHHH------HHHHHHHHhhc---
Confidence 445555555442 1 123579999999999999999999999765 567777755433 22222221100
Q ss_pred hHHHHHHHHHHHcCCCCceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCCC-CchhhhhhhhhccCC-
Q psy17062 227 PEQAKAMLERHFTRPHGPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSRMG- 302 (520)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR~~- 302 (520)
......+...+ ....+|||||++..... ..+.|+++++... .....+|.+||... .+...+..++.+|+.
T Consensus 150 -~~~~~~~l~~l---~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry--~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~ 223 (244)
T PRK07952 150 -ETSEEQLLNDL---SNVDLLVIDEIGVQTESRYEKVIINQIVDRRS--SSKRPTGMLTNSNMEEMTKLLGERVMDRMRL 223 (244)
T ss_pred -cccHHHHHHHh---ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH--hCCCCEEEeCCCCHHHHHHHhChHHHHHHHH
Confidence 01111222222 46889999999887654 3457889998643 22345566677542 122334566667762
Q ss_pred --cceEEeCCC
Q psy17062 303 --LTRLMFKPY 311 (520)
Q Consensus 303 --~~~i~~~~~ 311 (520)
...|.|.-.
T Consensus 224 ~~~~~i~f~~~ 234 (244)
T PRK07952 224 GNSLWVIFNWD 234 (244)
T ss_pred CCceEEEeeCC
Confidence 234666643
No 246
>PF14516 AAA_35: AAA-like domain
Probab=98.82 E-value=5e-07 Score=90.47 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=122.6
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC-----CChHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI-----PEPKRAYSR 215 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~-----~~~~~~~~~ 215 (520)
.+.|...-+++.+.|.. ++..+.|.||..+|||+++..+.+.+... +...+++++... .+...++..
T Consensus 13 Yi~R~~~e~~~~~~i~~-----~G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-----PGSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred ccCchHHHHHHHHHHhc-----CCCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHH
Confidence 45676555555555532 35679999999999999999999999776 788889988764 334555666
Q ss_pred HHHHHhcCCC--------------ChHHHHHHHHHHH-cCCCCceEEEEcCCccccccC--hHHHHHHH-HhcCCC----
Q psy17062 216 ILELLLNVDA--------------PPEQAKAMLERHF-TRPHGPCVLLIDELDYLCNKR--QDVIYNIL-EYLNKP---- 273 (520)
Q Consensus 216 i~~~l~g~~~--------------~~~~~~~~l~~~~-~~~~~~~vLiiDEid~l~~~~--~~~L~~ll-~~~~~~---- 273 (520)
++..+...-. ........+.+.+ .....|.||+|||+|.+.... .+-++.+| .|....
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 6555532210 1112333344433 233789999999999998742 22333433 333211
Q ss_pred -CCcEEEEEEEcCCCCchhhh-hhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 274 -KSRLIILCIANTMDLPERTL-KGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 274 -~~~v~vI~~tn~~~~~~~~l-~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
-.++.+|++........... ..+| + +. ..|.+++++.+++..+++.+- ..+++..++.|...+.|.+.-++.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPF-N-Ig-~~i~L~~Ft~~ev~~L~~~~~---~~~~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPF-N-IG-QPIELPDFTPEEVQELAQRYG---LEFSQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCc-c-cc-cceeCCCCCHHHHHHHHHhhh---ccCCHHHHHHHHHHHCCCHHHHHH
Confidence 23455665554332221111 1223 1 22 259999999999999888663 346777799998884444333444
Q ss_pred HHHHH
Q psy17062 352 CANHY 356 (520)
Q Consensus 352 al~~l 356 (520)
+...+
T Consensus 239 ~~~~l 243 (331)
T PF14516_consen 239 ACYLL 243 (331)
T ss_pred HHHHH
Confidence 33333
No 247
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.81 E-value=4.8e-09 Score=96.11 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 462 PESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
.+.+.|+++..+.+..++..... ..+-..+|||||||||||+||+.||++++.++
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 36789999999988877776554 44566899999999999999999999988765
No 248
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=2.3e-07 Score=89.90 Aligned_cols=173 Identities=11% Similarity=0.145 Sum_probs=106.9
Q ss_pred HHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh---------
Q psy17062 152 HRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL--------- 221 (520)
Q Consensus 152 ~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~--------- 221 (520)
.+.|...+. ++.+..+||+|| +||+++|+.+++.+......+. -.|..+.+ +..+.
T Consensus 11 ~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~----~~Cg~C~~--------C~~i~~~~HPD~~~ 76 (290)
T PRK07276 11 FQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGV----LPCGHCRS--------CRLIEQGEFSDVTV 76 (290)
T ss_pred HHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCC----CCCCCCHH--------HHHHhcCCCCCeee
Confidence 334444333 345667899995 7899999999998865431100 01222211 11110
Q ss_pred ----cCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhh
Q psy17062 222 ----NVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKG 295 (520)
Q Consensus 222 ----g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~ 295 (520)
|.....+++.+......... +...|+|||++|.|.....+.|+..|+++ ..++++|.+++..+ .+.+
T Consensus 77 i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP---p~~t~~iL~t~~~~----~lLp 149 (290)
T PRK07276 77 IEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP---QSEIYIFLLTNDEN----KVLP 149 (290)
T ss_pred ecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---CCCeEEEEEECChh----hCch
Confidence 22223344444333332222 66789999999999999999999999965 45677777777654 3567
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
.+.|||+. |+|++ +.+++.+++... .++.+..+.++. ..|++..|+.++.
T Consensus 150 TI~SRcq~--i~f~~-~~~~~~~~L~~~-----g~~~~~a~~la~----~~~s~~~A~~l~~ 199 (290)
T PRK07276 150 TIKSRTQI--FHFPK-NEAYLIQLLEQK-----GLLKTQAELLAK----LAQSTSEAEKLAQ 199 (290)
T ss_pred HHHHccee--eeCCC-cHHHHHHHHHHc-----CCChHHHHHHHH----HCCCHHHHHHHhC
Confidence 89999965 99977 777777777522 234444445554 4456878777664
No 249
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.78 E-value=1.2e-08 Score=104.21 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=59.7
Q ss_pred HhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 451 LARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 451 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
..+..|+.+++|+.++||+.+++.+..++...+....+.++++|||||||||++++++++++.+..+
T Consensus 3 ~~~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~ 69 (365)
T TIGR02928 3 RNRDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE 69 (365)
T ss_pred CChhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3467788999999999999999999999998887777788999999999999999999999986543
No 250
>PRK06921 hypothetical protein; Provisional
Probab=98.78 E-value=5e-08 Score=94.26 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
...+++|+|++|+|||+|+.++++++.... +..++++...++ +..+...+ ..+...+....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l------~~~l~~~~-----------~~~~~~~~~~~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEG------FGDLKDDF-----------DLLEAKLNRMK 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHH------HHHHHHHH-----------HHHHHHHHHhc
Confidence 457899999999999999999999986542 456677765332 22221111 11111222224
Q ss_pred CceEEEEcCCcc-------ccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC-Cch---hhhhhhhhccCCcceEEeCCC
Q psy17062 243 GPCVLLIDELDY-------LCNKRQDVIYNILEYLNKPKSRLIILCIANTMD-LPE---RTLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 243 ~~~vLiiDEid~-------l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~---~~l~~~l~sR~~~~~i~~~~~ 311 (520)
...+|||||++. +.....+.|+.+++........ +|.++|... .+. ..+..++..|+....|.|...
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~--tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~~~g~ 254 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP--ILISSELTIDELLDIDEALGSRIVEMCKDYLVIIKGD 254 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHhhhhhHHHHHHHHhccCeEEEecCc
Confidence 788999999954 2222356788888865422233 455677532 111 123344444554345777654
No 251
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.7e-07 Score=88.43 Aligned_cols=162 Identities=9% Similarity=0.040 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh-------------cCCCChHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL-------------NVDAPPEQ 229 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~-------------g~~~~~~~ 229 (520)
.+..+||+|+.|+||..+|.++++.+...... -.|..+.+ +..+. +.....++
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~------~~Cg~C~s--------C~~i~~~~HPDl~~i~p~~~~I~id~ 71 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN------GFCKTCES--------CLKILNGKYNDFYLIFDQKNPIKKED 71 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCC------CCCCCCHH--------HHHHhcCCCCCEEEecCCcccCCHHH
Confidence 45679999999999999999999988654211 02333221 11111 11122333
Q ss_pred HHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceE
Q psy17062 230 AKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRL 306 (520)
Q Consensus 230 ~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i 306 (520)
+.+......... +...|+|||++|.|.....+.|+.+++++ ..++++|.+++..+ .+.+.+.|||+. +
T Consensus 72 ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP---p~~t~fiLit~~~~----~lLpTI~SRCq~--~ 142 (261)
T PRK05818 72 ALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEP---PKNTYGIFTTRNEN----NILNTILSRCVQ--Y 142 (261)
T ss_pred HHHHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCC---CCCeEEEEEECChH----hCchHhhhheee--e
Confidence 333333222222 35789999999999999999999999865 56777888887655 356788999965 8
Q ss_pred EeCCC----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 307 MFKPY----------DHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 307 ~~~~~----------~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
.|+++ ...++.+.+..... +++ .++.. ..|+..+++.++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~L~~~~~----~d~----~i~~~---a~g~~~~a~~l~~~ 193 (261)
T PRK05818 143 VVLSKEKKVPFKVESNDRYFQYILLSFYS----VDE----QLQAY---NNGSFSKLKNIIET 193 (261)
T ss_pred ecCChhhhcccccccChHHHHHHHHHccC----ccH----HHHHH---cCCCHHHHHHHHHH
Confidence 88888 55555554444332 222 33333 77899998888874
No 252
>PRK08181 transposase; Validated
Probab=98.77 E-value=2e-08 Score=96.60 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
..+++|+||+|||||+|+.++++++... +..++++++.++ +..+...... ....+.+.. ...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~L------~~~l~~a~~~-----~~~~~~l~~----l~~ 167 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRTTDL------VQKLQVARRE-----LQLESAIAK----LDK 167 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeHHHH------HHHHHHHHhC-----CcHHHHHHH----Hhc
Confidence 4679999999999999999999988765 667777776443 2222111100 001122222 247
Q ss_pred ceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 244 PCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
+.+|||||++.+.... +..|+++++..... . .+|.+||..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~--s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYER-R--SILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhC-C--CEEEEcCCC
Confidence 8899999999886653 45789999855322 2 456667754
No 253
>KOG0729|consensus
Probab=98.77 E-value=7.4e-09 Score=95.48 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHHH---------HhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFL---------LSKISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~---------~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
++.|..++++.+...+ +..+++-||.|||||||||||||++|+|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 4555555555555433 23466999999999999999999999999974
No 254
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=2.5e-07 Score=103.18 Aligned_cols=208 Identities=16% Similarity=0.234 Sum_probs=131.6
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC--CChHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI--PEPKRAYSRILE 218 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~--~~~~~~~~~i~~ 218 (520)
++||+.+++.|...+.+. ..+.+..+++.|.+|.|||.+++++.+.+... ...++...|..+ ..+...+.+.+.
T Consensus 2 l~GRe~ev~~Ll~~f~~v-~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~---~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRV-SKGRGEVVLVAGESGIGKSALVNEVHKPITQQ---RGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHH-hCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc---ceeeeHhhcccccCCCchHHHHHHHH
Confidence 689999999999999997 55666689999999999999999999998764 234444444422 334333333333
Q ss_pred HHhcCCC---------------------------------------------ChHH-------HHHHHHHHHcCCCCceE
Q psy17062 219 LLLNVDA---------------------------------------------PPEQ-------AKAMLERHFTRPHGPCV 246 (520)
Q Consensus 219 ~l~g~~~---------------------------------------------~~~~-------~~~~l~~~~~~~~~~~v 246 (520)
.+.|+-. +... .....-..|....+|.|
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 3322100 0000 11111122333367999
Q ss_pred EEEcCCccccccChHHHHHHHHhcC--CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHH
Q psy17062 247 LLIDELDYLCNKRQDVIYNILEYLN--KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRL 324 (520)
Q Consensus 247 LiiDEid~l~~~~~~~L~~ll~~~~--~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l 324 (520)
+|+|++||.+....+.|..+++... ....+-+....+.. .. +.....+.-.+..|.+.|++..+...++...+
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~---~~--~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR---PT--LGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc---ch--hhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 9999999999988888888887432 00000111111111 11 12233344455679999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 325 KNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 325 ~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
...........+.+.++ ..|++..+-++++...
T Consensus 233 ~~~~~~~~p~~~~i~~k---t~GnPfFi~e~lk~l~ 265 (849)
T COG3899 233 GCTKLLPAPLLELIFEK---TKGNPFFIEEFLKALY 265 (849)
T ss_pred CCcccccchHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 87556677788888888 4555555544554443
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.77 E-value=5.3e-08 Score=95.81 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhc
Q psy17062 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLN 222 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g 222 (520)
++...+.....++.....+....+++|+|++|||||+|+.++++++... +..+.++...++ +..+-..+ +
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~---g~~v~~~~~~~l------~~~lk~~~-~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK---GVSSTLLHFPEF------IRELKNSI-S 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEEEHHHH------HHHHHHHH-h
Confidence 4555555566677654333356789999999999999999999999765 566666665543 22222222 1
Q ss_pred CCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc--Ch-HHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 223 VDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK--RQ-DVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~--~~-~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
.. ...+.+.. .....||||||+...... .. ++|..+++... ..+...|.+||-
T Consensus 205 ~~----~~~~~l~~----l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~--~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG----SVKEKIDA----VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRM--QEELPTFFTSNF 260 (306)
T ss_pred cC----cHHHHHHH----hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHH--HCCCeEEEECCC
Confidence 10 11222222 257889999999765443 23 45666766432 124556667775
No 256
>KOG0737|consensus
Probab=98.75 E-value=8e-09 Score=100.06 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=44.7
Q ss_pred CCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 440 TAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.+.++++++..++.|+...+ ++-+.- ++|...--.+++.|||||||||||||++|||+|++...+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~Vi---lPlr~p------elF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVI---LPLRRP------ELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred eeehhhccchHHHHHHHHHHHh---hcccch------hhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 4566777788887777765322 111100 112222225699999999999999999999999986543
No 257
>KOG0652|consensus
Probab=98.75 E-value=1e-08 Score=94.23 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHHHHH---------HhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFL---------LSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~---------~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
++.|.++.+.++...+ +..++++||.|+|+|||||||||++|||.|..-
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4455555555555443 345669999999999999999999999998653
No 258
>PRK06526 transposase; Provisional
Probab=98.73 E-value=1.4e-08 Score=97.19 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~ 243 (520)
..+++|+||||||||+++.+++.++... +..++++++.++ +..+...... ......+.. ...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~t~~~l------~~~l~~~~~~-----~~~~~~l~~----l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFATAAQW------VARLAAAHHA-----GRLQAELVK----LGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhhhHHHH------HHHHHHHHhc-----CcHHHHHHH----hcc
Confidence 4679999999999999999999988665 555555544332 2222111100 012222222 246
Q ss_pred ceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 244 PCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 244 ~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
+.+|||||++.+... .++.|+++++..... . .+|.++|..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~-~--s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYER-A--SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhc-C--CEEEEcCCC
Confidence 789999999987643 456788998754322 2 366677764
No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.73 E-value=5.1e-08 Score=104.36 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=79.1
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcC------------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCc
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLN------------------KPKSRLIILCIANTMDLPERTLKGKVSSRMGL 303 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~ 303 (520)
....+|||||++.|....|..|..+|+... ....++.+|+++|.. ... .+++.|.+||..
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~-ll~-~~dpdL~~rfk~ 302 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD-ALE-NMHPALRSRIKG 302 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC-HHH-hhhHHHHHHhcc
Confidence 345799999999998888888999885321 112467889888873 222 357788888852
Q ss_pred --ceEEeCCC---CHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHcCCCCCC-------HHHHHHHHHhhhc
Q psy17062 304 --TRLMFKPY---DHHQLQEIVQNRLKN------NNCFHPDAVQLVARLEPPTSRS-------EIFCANHYTNEKK 361 (520)
Q Consensus 304 --~~i~~~~~---~~~~~~~Il~~~l~~------~~~~~~~~l~~la~~~~~~~G~-------~r~al~~l~~a~~ 361 (520)
-.+.|..- +.+.+..++....+. ...++++++..|.+.+.+..|+ .+...++++.|..
T Consensus 303 ~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~ 378 (637)
T PRK13765 303 YGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGD 378 (637)
T ss_pred CeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHH
Confidence 22555532 345555555533322 2578999999998877655554 6777788888765
No 260
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.73 E-value=3.7e-08 Score=102.05 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=139.3
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
++-+..++.+...+....... ..+++.|.+||||-.+++++.+.-. . .-++|.+||..+.+. .|-+.|+
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~--~pvll~GEtGtGKe~laraiH~~s~-~---~gpfvAvNCaAip~~-----liesELF 384 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD--LPVLLQGETGTGKEVLARAIHQNSE-A---AGPFVAVNCAAIPEA-----LIESELF 384 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC--CCeEecCCcchhHHHHHHHHHhccc-c---cCCeEEEEeccchHH-----hhhHHHh
Confidence 356667777777777754433 3499999999999999999998765 3 568999999887541 2234444
Q ss_pred cCCCCh-HHHH-HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC-------CCCCcEEEEEEEcCCCCch--
Q psy17062 222 NVDAPP-EQAK-AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN-------KPKSRLIILCIANTMDLPE-- 290 (520)
Q Consensus 222 g~~~~~-~~~~-~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~-------~~~~~v~vI~~tn~~~~~~-- 290 (520)
|..... .... +-....+.. .....||+|||..|.-.-|..|+.+|.... .....|-||++|+.. +..
T Consensus 385 Gy~~GafTga~~kG~~g~~~~-A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d-l~~lv 462 (606)
T COG3284 385 GYVAGAFTGARRKGYKGKLEQ-ADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD-LAQLV 462 (606)
T ss_pred ccCccccccchhcccccccee-cCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC-HHHHH
Confidence 432111 0000 111111111 356789999999999999999999997532 123457788877652 221
Q ss_pred --hhhhhhhhccCCcceEEeCCCCH-HHHHHHHHHHHhCC----CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 291 --RTLKGKVSSRMGLTRLMFKPYDH-HQLQEIVQNRLKNN----NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 291 --~~l~~~l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~~----~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
..+...+..|+..-+|.+||+.+ .+....|.+++.+. ..++++++..|... .+.||+|...++++.++..
T Consensus 463 ~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~--~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 463 EQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY--RWPGNIRELDNVIERLAAL 539 (606)
T ss_pred HcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC--CCCCcHHHHHHHHHHHHHc
Confidence 23456677888777899999855 44444555544443 67888888887664 6999999999999998763
No 261
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.3e-08 Score=100.63 Aligned_cols=69 Identities=33% Similarity=0.494 Sum_probs=62.6
Q ss_pred HHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhcC
Q psy17062 450 QLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD 518 (520)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~~ 518 (520)
+..+..+..+++|..+++|+.++..++.++...+....|.++++|||||||||++++.|++++.+...+
T Consensus 4 ~~n~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 4 FKNKDVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccccccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 344667778899999999999999999999999999999999999999999999999999999987544
No 262
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.72 E-value=9.3e-09 Score=94.65 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCCCCCChHHHHHH---HHHHHHh--hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 461 VPESLPCREAEFQS---IHRFLLS--KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 461 ~~~~~~~~~~~~~~---l~~~~~~--~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++++|+++.-.. |+.++.. .++.=.|.+||||||||||||++|||||++.+
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 33567777765332 2333333 22355889999999999999999999999865
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.70 E-value=8.7e-08 Score=91.83 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
+.+.+..+..+.... . .+.+++|+|+||||||+|+-++++++... +..++++...++. .++...
T Consensus 88 ~~~~l~~~~~~~~~~-~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~---g~sv~f~~~~el~----------~~Lk~~ 151 (254)
T COG1484 88 DKKALEDLASLVEFF-E--RGENLVLLGPPGVGKTHLAIAIGNELLKA---GISVLFITAPDLL----------SKLKAA 151 (254)
T ss_pred hHHHHHHHHHHHHHh-c--cCCcEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEEHHHHH----------HHHHHH
Confidence 334444444444332 1 56789999999999999999999999844 7888888877652 222211
Q ss_pred CCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 224 DAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
... ......+...+ ....||||||+...... ..+.+++++....... .. |.++|..
T Consensus 152 ~~~-~~~~~~l~~~l---~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~-~~--~~tsN~~ 209 (254)
T COG1484 152 FDE-GRLEEKLLREL---KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR-SL--IITSNLS 209 (254)
T ss_pred Hhc-CchHHHHHHHh---hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc-cc--eeecCCC
Confidence 000 11222333322 47889999999886554 4567777776442122 22 6667754
No 264
>KOG0726|consensus
Probab=98.69 E-value=1.5e-08 Score=94.62 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=27.9
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+..+++||.||+|||+||||||+||||||+.
T Consensus 212 eemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 212 EEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred HHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 3456899999999999999999999999975
No 265
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.69 E-value=3e-08 Score=90.29 Aligned_cols=135 Identities=18% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|++.....+.-.. .+ +.++||+||||||||++|+.+...|...... .. +......+.... ....
T Consensus 3 ~dI~GQe~aKrAL~iAA----aG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~--e~--le~~~i~s~~~~--~~~~ 70 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----AG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEE--EA--LEVSKIYSVAGL--GPDE 70 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----HC--C--EEEES-CCCTHHHHHHHHHHCS--CCEE--CC--ESS--S-TT-----S---
T ss_pred hhhcCcHHHHHHHHHHH----cC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchH--HH--hhhccccccccC--CCCC
Confidence 35678887766554333 32 3689999999999999999999877543210 00 111111110000 0000
Q ss_pred HHhcC-CCC---hHHHHHHHHHHHcC-------CCCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcE
Q psy17062 219 LLLNV-DAP---PEQAKAMLERHFTR-------PHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRL 277 (520)
Q Consensus 219 ~l~g~-~~~---~~~~~~~l~~~~~~-------~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v 277 (520)
.+... ++. -......+...-.. .....||||||+..+.....+.|.+.++... ...+++
T Consensus 71 ~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 71 GLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred ceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 00000 000 00011111111000 1467899999999998888888888887431 124578
Q ss_pred EEEEEEcC
Q psy17062 278 IILCIANT 285 (520)
Q Consensus 278 ~vI~~tn~ 285 (520)
.+|++.|.
T Consensus 151 ~lv~a~NP 158 (206)
T PF01078_consen 151 LLVAAMNP 158 (206)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecc
Confidence 99999986
No 266
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=98.68 E-value=3.9e-06 Score=84.96 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=136.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC---C----ChHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI---P----EPKRAY 213 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~---~----~~~~~~ 213 (520)
-+||+.+++.+.+-|... ..+.+..-+|.|.-|+|||++++.+....... ++.+.+++.+.- . ....+|
T Consensus 27 ~VGr~~e~~~l~~~l~~v-~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~---~fvvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRV-ADGGSSFKFIRGEYGSGKTFFLRLIRERALEK---GFVVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred eechHHHHHHHHHHHHHH-hCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc---CCEEEEEecCCCcccccccccHHHHH
Confidence 689999999999999875 56777788999999999999999999887766 777777766551 1 223366
Q ss_pred HHHHHHHhcCCC-----------------------------------------------------C--------------
Q psy17062 214 SRILELLLNVDA-----------------------------------------------------P-------------- 226 (520)
Q Consensus 214 ~~i~~~l~g~~~-----------------------------------------------------~-------------- 226 (520)
.+|+..+.-... .
T Consensus 103 r~l~~nL~t~~~p~G~al~~ild~wi~~~~~~~~~~~~~~~~~~~~~~v~~~I~~~L~~l~~~~~~~~Fa~~l~~Y~~a~ 182 (416)
T PF10923_consen 103 RELMRNLSTKTKPEGGALRSILDRWIYNLEEEVAAEGGIEPDEGFEEAVEELIEERLASLSELVHGPDFAAALRAYYRAY 182 (416)
T ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHcccCChhHHHHHHHHHHHH
Confidence 666555531100 0
Q ss_pred ---------------------------------------hHHHHHHHHHHHcCC-CCceEEEEcCCccccccC-------
Q psy17062 227 ---------------------------------------PEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKR------- 259 (520)
Q Consensus 227 ---------------------------------------~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~------- 259 (520)
+-...+.|...+..+ ..+.+|+|||++.+..-.
T Consensus 183 ~~gd~~~~~~~l~WL~Ge~~~kt~ar~~lGV~~~Idd~~~~~~Lk~L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~~R~~ 262 (416)
T PF10923_consen 183 VEGDEELADAALRWLRGEYNTKTEARRALGVRGIIDDDNAYDFLKGLARFLRDAGYKGLLILLDELENLYKLRNDQAREK 262 (416)
T ss_pred hcCCHHHHHHHHHHHcCCCccHHHHHHHcCCCeeeCchHHHHHHHHHHHHHHHcCCCceEEEEechHHHHhcCChHHHHH
Confidence 001222233333334 678899999999886532
Q ss_pred -hHHHHHHHHhcCCC-CCcEEEEEEEcCCCCch--hhh--hhhhhccCC-------------cceEEeCCCCHHHHHHHH
Q psy17062 260 -QDVIYNILEYLNKP-KSRLIILCIANTMDLPE--RTL--KGKVSSRMG-------------LTRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 260 -~~~L~~ll~~~~~~-~~~v~vI~~tn~~~~~~--~~l--~~~l~sR~~-------------~~~i~~~~~~~~~~~~Il 320 (520)
.+.|.++++..... -.++.+|.++.+.-+.+ +.+ .++|.+|+. ..+|.+++++.+++..++
T Consensus 263 ~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~ 342 (416)
T PF10923_consen 263 NYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELL 342 (416)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHH
Confidence 23466666654332 23555555444321111 111 233444432 126999999999999887
Q ss_pred HHHHhCC-------CCCCHHHHHHHHHHcCCCCCC---------HHHHHHHHHhhhc
Q psy17062 321 QNRLKNN-------NCFHPDAVQLVARLEPPTSRS---------EIFCANHYTNEKK 361 (520)
Q Consensus 321 ~~~l~~~-------~~~~~~~l~~la~~~~~~~G~---------~r~al~~l~~a~~ 361 (520)
.....-. ..++++.+..+++.+.+..|. ++..+++|....+
T Consensus 343 ~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q 399 (416)
T PF10923_consen 343 EKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQ 399 (416)
T ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHH
Confidence 7655422 678899999888887665442 4455566665544
No 267
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=2.4e-06 Score=85.56 Aligned_cols=167 Identities=13% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
+..|+||+.++..|...|... ....+..+.|+|++|+|||++++.+...+ +...+++|.. ++.+++..++
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~-d~~~privvLtG~~G~GKTTLlR~~~~~l------~~~qL~vNpr---g~eElLr~LL 330 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRL-DTAHPRIVVFTGFRGCGKSSLCRSAVRKE------GMPAVFVDVR---GTEDTLRSVV 330 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhcc-CCCCceEEEEECCCCCCHHHHHHHHHhcC------CceEEEECCC---CHHHHHHHHH
Confidence 446889999999999999763 33344588999999999999999999877 6566666655 6789999999
Q ss_pred HHHhcCCC-ChHHHHHHHHHHHcCC----CCceEEE--EcCCccccccChHHHHHHHHhc-CCCCCcEEEEEEEcCCCCc
Q psy17062 218 ELLLNVDA-PPEQAKAMLERHFTRP----HGPCVLL--IDELDYLCNKRQDVIYNILEYL-NKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 218 ~~l~g~~~-~~~~~~~~l~~~~~~~----~~~~vLi--iDEid~l~~~~~~~L~~ll~~~-~~~~~~v~vI~~tn~~~~~ 289 (520)
.+|.-... ........+.+.+... +...||| |-|-+.|.. +....+... ...-|++++=. +.+.+
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~r----vyne~v~la~drr~ch~v~ev---plesl 403 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQR----VYNEVVALACDRRLCHVVIEV---PLESL 403 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHH----HHHHHHHHHccchhheeeeee---hHhhc
Confidence 99853322 2234444444444332 3333444 556555532 222222211 12234443322 22222
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHh
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLK 325 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~ 325 (520)
. +..-..-|+++ ..+|+++.++-.+..++.+.
T Consensus 404 t--~~~~~lprldf--~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 404 T--IANTLLPRLDF--YLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred c--hhcccCcccee--EecCCCCHHHHHHHHhhccc
Confidence 1 12233456655 88999999999888887664
No 268
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.64 E-value=5.9e-08 Score=100.10 Aligned_cols=67 Identities=34% Similarity=0.454 Sum_probs=60.6
Q ss_pred HHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 449 LQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 449 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.+.+..+..+++|..+++|+.++..+..++...+....+.++++|||||||||++++.+++++.+.
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6667788888999999999999999999999888877777889999999999999999999998765
No 269
>KOG0738|consensus
Probab=98.63 E-value=2.1e-08 Score=97.45 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 441 APLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.|.++.++++++..|++..+ +..++--++.. ..+|=.|||+.||||||||+||||||+|.+
T Consensus 209 ikW~DIagl~~AK~lL~EAVv----------lPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVV----------LPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cChHhhcchHHHHHHHHHHHh----------hhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 456677778888887776432 22222222211 145667899999999999999999999865
No 270
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.63 E-value=6.2e-08 Score=87.81 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
.+.+++|+|++|||||++|.++++++... +..+.+++..++ +..+..... .....+.+..+ .
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~~~~L----------~~~l~~~~~-~~~~~~~~~~l----~ 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFITASDL----------LDELKQSRS-DGSYEELLKRL----K 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEHHHH----------HHHHHCCHC-CTTHCHHHHHH----H
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEeecCce----------ecccccccc-ccchhhhcCcc----c
Confidence 45789999999999999999999998875 777888876553 333332111 11122333333 3
Q ss_pred CceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 243 GPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
...+|||||+...... ..+.|+++++.... . + ..|.+||.
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~-~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYE-R-K-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHH-T---EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhc-c-c-CeEeeCCC
Confidence 6789999999765433 45568888876532 2 2 45557885
No 271
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=1.5e-06 Score=99.55 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=112.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc-CCChHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS-IPEPKRAYSR 215 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~-~~~~~~~~~~ 215 (520)
.+..++.|...++.+. . ....+.++|+||+|.|||+++..+++.. + .+++++... ..++..++..
T Consensus 12 ~~~~~~~R~rl~~~l~----~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~-~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 12 RLHNTVVRERLLAKLS----G---ANNYRLVLVTSPAGYGKTTLISQWAAGK------N-NLGWYSLDESDNQPERFASY 77 (903)
T ss_pred CccccCcchHHHHHHh----c---ccCCCeEEEECCCCCCHHHHHHHHHHhC------C-CeEEEecCcccCCHHHHHHH
Confidence 3445667765555443 2 2344679999999999999999988654 4 555665543 3566777777
Q ss_pred HHHHHhcCCC----------------ChHHHHHHHHHHHcCCCCceEEEEcCCccccccC-hHHHHHHHHhcCCCCCcEE
Q psy17062 216 ILELLLNVDA----------------PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR-QDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 216 i~~~l~g~~~----------------~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~-~~~L~~ll~~~~~~~~~v~ 278 (520)
++..+..... ........+...+.....|.+|||||+|++.... .+.|..+++.. ..++.
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~ 154 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLT 154 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeE
Confidence 7777741110 0011112222222223679999999999997543 34566666643 34555
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeC--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCC
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFK--PYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTS 346 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~--~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~ 346 (520)
+|.++....... + ..+.-+-...+|... +++.++..+++...+. ..++++.++.|.+.+.|+.
T Consensus 155 lv~~sR~~~~~~--~-~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~--~~~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 155 LVVLSRNLPPLG--I-ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS--SPIEAAESSRLCDDVEGWA 219 (903)
T ss_pred EEEEeCCCCCCc--h-HhHHhcCcceecCHHhCCCCHHHHHHHHHhccC--CCCCHHHHHHHHHHhCChH
Confidence 555665422111 1 122111112224444 8999999999987766 4568889999999844443
No 272
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=2.5e-07 Score=96.81 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHH----
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSR---- 215 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~---- 215 (520)
.+.|++..++.+.-.+ ..+.+++|+||||+|||++++.+...+.... +..++ ++....+....+..
T Consensus 193 dv~Gq~~~~~al~~aa------~~g~~vlliG~pGsGKTtlar~l~~llp~~~--~~~~l--e~~~i~s~~g~~~~~~~~ 262 (499)
T TIGR00368 193 DIKGQQHAKRALEIAA------AGGHNLLLFGPPGSGKTMLASRLQGILPPLT--NEEAI--ETARIWSLVGKLIDRKQI 262 (499)
T ss_pred HhcCcHHHHhhhhhhc------cCCCEEEEEecCCCCHHHHHHHHhcccCCCC--CcEEE--eccccccchhhhcccccc
Confidence 4567766544433222 2346799999999999999999998764322 11222 22221110000000
Q ss_pred ------------HHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC----------CC
Q psy17062 216 ------------ILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KP 273 (520)
Q Consensus 216 ------------i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~ 273 (520)
....++|.... .--..+.. ....+|||||++.+....++.|++.|+... ..
T Consensus 263 ~~~Pf~~p~~s~s~~~~~ggg~~------~~pG~i~l-A~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~ 335 (499)
T TIGR00368 263 KQRPFRSPHHSASKPALVGGGPI------PLPGEISL-AHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFY 335 (499)
T ss_pred ccCCccccccccchhhhhCCccc------cchhhhhc-cCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceec
Confidence 00001110000 00001111 356899999999999999999999997432 11
Q ss_pred CCcEEEEEEEcCCC--Cch-----------------hhhhhhhhccCCcceEEeCCCCHHHH
Q psy17062 274 KSRLIILCIANTMD--LPE-----------------RTLKGKVSSRMGLTRLMFKPYDHHQL 316 (520)
Q Consensus 274 ~~~v~vI~~tn~~~--~~~-----------------~~l~~~l~sR~~~~~i~~~~~~~~~~ 316 (520)
..++.+|+++|.-. ... ..+..++..||+.. +.+++++.+++
T Consensus 336 pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~-~~~~~~~~~~l 396 (499)
T TIGR00368 336 PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLS-VEVPLLPPEKL 396 (499)
T ss_pred cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEE-EEEcCCCHHHH
Confidence 35789999998631 000 12567889999875 88888766543
No 273
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.62 E-value=4.4e-06 Score=83.78 Aligned_cols=180 Identities=12% Similarity=0.202 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH----HHHHh
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI----LELLL 221 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i----~~~l~ 221 (520)
...+.|.+.|... ....+..+.|+|+=|+|||++++.+.+.+.........++++++-.......++..+ ..++.
T Consensus 3 ~~a~~la~~I~~~-~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 3 PYAKALAEIIKNP-DSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHHhcc-CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 3455666666543 225677899999999999999999999997763335788899987776644343333 33332
Q ss_pred cCCC----------------------------Ch----------------------------------HH-------HHH
Q psy17062 222 NVDA----------------------------PP----------------------------------EQ-------AKA 232 (520)
Q Consensus 222 g~~~----------------------------~~----------------------------------~~-------~~~ 232 (520)
.... .. .. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (325)
T PF07693_consen 82 KHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELIS 161 (325)
T ss_pred HhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHH
Confidence 1100 00 00 011
Q ss_pred HHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch---h--------hhhhhhhccC
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE---R--------TLKGKVSSRM 301 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~---~--------~l~~~l~sR~ 301 (520)
.+...+.....+.||||||+|.+.+...-.++..+.... ...++++|.+.+...... . .....+..++
T Consensus 162 ~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~-~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 162 KIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLL-DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred HHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhc-CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 111122222678999999999998876555666665443 236777777666432111 0 0112333444
Q ss_pred CcceEEeCCCCHHHHHHHHHHHHhCC
Q psy17062 302 GLTRLMFKPYDHHQLQEIVQNRLKNN 327 (520)
Q Consensus 302 ~~~~i~~~~~~~~~~~~Il~~~l~~~ 327 (520)
-...+.+|+++..++..++...+...
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 33459999999999999988886543
No 274
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.60 E-value=8.2e-07 Score=87.87 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=115.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEcc-----ccCCCh--
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNA-----LSIPEP-- 209 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~--~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~-----~~~~~~-- 209 (520)
.++|.++.+.++.+++.....+ .....++|+||||+|||++|+++++.+..-... .-+++.+.. .-..+|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 6899999999999999987653 334678999999999999999999999653211 112333322 111111
Q ss_pred ---HHHHHHHH-----------------------HHHhcCCC-----------------------C--hHHHHHHHH---
Q psy17062 210 ---KRAYSRIL-----------------------ELLLNVDA-----------------------P--PEQAKAMLE--- 235 (520)
Q Consensus 210 ---~~~~~~i~-----------------------~~l~g~~~-----------------------~--~~~~~~~l~--- 235 (520)
...-..+. ..+.|.-. + ..++...+.
T Consensus 132 l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G~vd 211 (361)
T smart00763 132 LFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTGKVD 211 (361)
T ss_pred cCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhcccC
Confidence 11111111 22222110 0 001111111
Q ss_pred --H--HHcCC-------------CCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCCch
Q psy17062 236 --R--HFTRP-------------HGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDLPE 290 (520)
Q Consensus 236 --~--~~~~~-------------~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~~~ 290 (520)
+ .+... ....|+-|+|+.....+-+..|+.+++.... -....+||+++|..+...
T Consensus 212 ~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~ 291 (361)
T smart00763 212 IRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQR 291 (361)
T ss_pred HHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhh
Confidence 0 11110 3457888889999888777777777764321 122356788888765322
Q ss_pred h---hhhhhhhccCCcceEEeCCC-CHHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q psy17062 291 R---TLKGKVSSRMGLTRLMFKPY-DHHQLQEIVQNRLKNN----NCFHPDAVQLVAR 340 (520)
Q Consensus 291 ~---~l~~~l~sR~~~~~i~~~~~-~~~~~~~Il~~~l~~~----~~~~~~~l~~la~ 340 (520)
+ ....+|..||.. |.++.+ +..+-.+|.++.+... ..+.+.+++.+|.
T Consensus 292 ~~~~k~~eaf~dR~~~--i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 292 FKSNKKNEALLDRIIK--VKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred hhccccchhhhhceEE--EeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 1 235789999964 666654 5577788888877642 3455555555554
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=1.8e-07 Score=90.12 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
.+.+++|+||+|||||+++.+++..+... +..+.++++.++. ..+....... .....+... ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~l~------~~l~~a~~~~-----~~~~~~~~~---~~ 163 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAADLL------LQLSTAQRQG-----RYKTTLQRG---VM 163 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHHHH------HHHHHHHHCC-----cHHHHHHHH---hc
Confidence 34679999999999999999999886554 5666677654431 1111111000 011122221 14
Q ss_pred CceEEEEcCCcccccc--ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 243 GPCVLLIDELDYLCNK--RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
.+.+|+|||++.+... ..+.|+++++..... . .+|.++|..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~-~--s~iiTsn~~ 206 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G--SMILTSNLP 206 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhc-C--cEEEecCCC
Confidence 6789999999876544 344788888754322 2 256667753
No 276
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.57 E-value=3.9e-08 Score=100.61 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=42.4
Q ss_pred CCCCCChHHHHHHHHHHHHh---------hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLS---------KISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.+.|.+.++..+...+.. .++..++.+||||||||||||++|+++|+++..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 34677888888777766543 344688999999999999999999999998753
No 277
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.55 E-value=6.4e-08 Score=100.73 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHH---------hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLL---------SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~---------~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.|.+..+..+...+. ...+..++.|+|||||||||||++||++|++|...
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4445555555544433 33457789999999999999999999999998765
No 278
>KOG0728|consensus
Probab=98.54 E-value=1e-07 Score=87.34 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.1
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+++.+++..|.|+|||||||||||+||+|+|+.
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 567788999999999999999999999999974
No 279
>KOG0731|consensus
Probab=98.54 E-value=5.9e-08 Score=103.40 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=32.7
Q ss_pred HHHHHHHHHh-----hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 472 FQSIHRFLLS-----KISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 472 ~~~l~~~~~~-----~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+.++..|+.. .++.+.|.|+||.||||||||+||||+|.|-
T Consensus 323 l~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 323 LMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred HHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 4445555443 4558999999999999999999999999763
No 280
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=3.5e-06 Score=98.29 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC---------
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP--------- 207 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~--------- 207 (520)
..+.++|++..++++..+|.. .......+-|+|++|+||||+|+++++.+..... + .++++.....
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~-g--~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ-S--SVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC-e--EEEeeccccccchhhcccc
Confidence 345799999999999988853 3445667899999999999999999998865432 1 1222211000
Q ss_pred ------ChHHHHHHHHHHHhcCC-CChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEE
Q psy17062 208 ------EPKRAYSRILELLLNVD-APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIIL 280 (520)
Q Consensus 208 ------~~~~~~~~i~~~l~g~~-~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI 280 (520)
....+...++..+.+.. ..... ...+++.+. .++.+|+||+++... ..+.|....+|. ..+..||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~-~~~~~~~L~--~krvLLVLDdv~~~~--~l~~L~~~~~~~---~~GsrII 328 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH-LGAMEERLK--HRKVLIFIDDLDDQD--VLDALAGQTQWF---GSGSRII 328 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCC-HHHHHHHHh--CCeEEEEEeCCCCHH--HHHHHHhhCccC---CCCcEEE
Confidence 00112223333332221 00000 122233332 478899999987542 122333333332 2233455
Q ss_pred EEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC
Q psy17062 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN 326 (520)
Q Consensus 281 ~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~ 326 (520)
.||++..... . ..+. ..+.++.++.++..+++..++-.
T Consensus 329 iTTrd~~vl~-----~--~~~~-~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 329 VITKDKHFLR-----A--HGID-HIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred EEeCcHHHHH-----h--cCCC-eEEEecCCCHHHHHHHHHHHhcC
Confidence 5666543211 1 1121 34888999999999999887754
No 281
>KOG0734|consensus
Probab=98.53 E-value=6.6e-08 Score=97.37 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh-----hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 471 EFQSIHRFLLS-----KISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 471 ~~~~l~~~~~~-----~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+++++.+|+.. .++.+.|+||||.||||||||+||||||-|-
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 46667777655 4568999999999999999999999999763
No 282
>PHA00729 NTP-binding motif containing protein
Probab=98.52 E-value=9.9e-07 Score=81.83 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----------CCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIG----------DKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAK 231 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----------~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 231 (520)
....+++|+|+||||||++|.++++.+..... .+....+++. ....
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~------------------------~~Ll 70 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFEL------------------------PDAL 70 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEH------------------------HHHH
Confidence 34458999999999999999999998731100 0111122222 2233
Q ss_pred HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCC
Q psy17062 232 AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 232 ~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~ 311 (520)
..+...+.......+|||||+..-..... |... .. .....+.+.+.+|+.. +.|.++
T Consensus 71 ~~L~~a~~~~~~~dlLIIDd~G~~~~~~~--------wh~~---~~----------~~yf~L~~aLrSR~~l--~il~~l 127 (226)
T PHA00729 71 EKIQDAIDNDYRIPLIIFDDAGIWLSKYV--------WYED---YM----------KTFYKIYALIRTRVSA--VIFTTP 127 (226)
T ss_pred HHHHHHHhcCCCCCEEEEeCCchhhcccc--------hhhh---cc----------chHHHHHHHHHhhCcE--EEEecC
Confidence 33433333323446899999755432210 1100 00 0111245667777755 888888
Q ss_pred CHHHHHHHHHH
Q psy17062 312 DHHQLQEIVQN 322 (520)
Q Consensus 312 ~~~~~~~Il~~ 322 (520)
+.+++.+.|+.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 88888887776
No 283
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.52 E-value=4.9e-07 Score=85.13 Aligned_cols=179 Identities=18% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChH
Q psy17062 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228 (520)
Q Consensus 149 ~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~ 228 (520)
++....|..++.. ..+..++||+|||||.+++.+++.+ +..++.++|.+..+.. .+.+|
T Consensus 19 ~r~~~~l~~al~~--~~~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~-~l~ri------------ 77 (231)
T PF12774_consen 19 DRCFLTLTQALSL--NLGGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQ-SLSRI------------ 77 (231)
T ss_dssp HHHHHHHHHHHCT--TTEEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HH-HHHHH------------
T ss_pred HHHHHHHHHHhcc--CCCCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHH-HHHHH------------
Confidence 3444444444332 3446789999999999999999999 9999999999876422 22222
Q ss_pred HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhc----CCC-------------CCcEEEEEEEcCCCCchh
Q psy17062 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYL----NKP-------------KSRLIILCIANTMDLPER 291 (520)
Q Consensus 229 ~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~----~~~-------------~~~v~vI~~tn~~~~~~~ 291 (520)
+.... ..+.++++||++.|..+...++.+.+... ... +..+.+..+.|....-..
T Consensus 78 -----l~G~~---~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~ 149 (231)
T PF12774_consen 78 -----LKGLA---QSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRS 149 (231)
T ss_dssp -----HHHHH---HHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC-
T ss_pred -----HHHHh---hcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcc
Confidence 11121 25789999999999887665554444321 111 113344455564322223
Q ss_pred hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHH--------HHHHHHHHcC---CCCCCHHHHHHHHHhhh
Q psy17062 292 TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPD--------AVQLVARLEP---PTSRSEIFCANHYTNEK 360 (520)
Q Consensus 292 ~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~--------~l~~la~~~~---~~~G~~r~al~~l~~a~ 360 (520)
.++..++.-|.. +.+..||...+.+++-.... ..+.. ..+.+.+.+. .|.-.+|....++..|+
T Consensus 150 ~LP~nLk~lFRp--vam~~PD~~~I~ei~L~s~G---F~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~ 224 (231)
T PF12774_consen 150 ELPENLKALFRP--VAMMVPDLSLIAEILLLSQG---FKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAG 224 (231)
T ss_dssp -S-HHHCTTEEE--EE--S--HHHHHHHHHHCCC---TSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHH
T ss_pred cCCHhHHHHhhe--eEEeCCCHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHH
Confidence 356666666644 89999998888777653221 11111 1122222221 24456777777777766
Q ss_pred c
Q psy17062 361 K 361 (520)
Q Consensus 361 ~ 361 (520)
.
T Consensus 225 ~ 225 (231)
T PF12774_consen 225 S 225 (231)
T ss_dssp H
T ss_pred H
Confidence 5
No 284
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.52 E-value=8.9e-07 Score=93.05 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=28.0
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+...++.+|-+.||+|+|||+|.|.|+..+...
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 346788999999999999999999998776543
No 285
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.48 E-value=3.7e-07 Score=99.64 Aligned_cols=171 Identities=20% Similarity=0.164 Sum_probs=103.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHh-CCCeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----------------STTGCMYISGVPGTGKTATVHAVMRKLKQEI-GDKFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----------------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~-~~~~~~i~ 200 (520)
..++|.+.....|.-.|-..... +...+|||.|+||||||.+++.+++...... ..+..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 35788887776665555432110 1123899999999999999999998532110 00122222
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHH-HHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLER-HFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN-------- 271 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~-~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~-------- 271 (520)
+.+..... + .....|. ..+.. .+.. ....+++|||++.|....|..|+.+|+...
T Consensus 530 vgLTa~~~----~---~d~~tG~--------~~le~GaLvl-AdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 530 VGLTASIK----F---NESDNGR--------AMIQPGAVVL-ANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccccchhh----h---cccccCc--------ccccCCcEEE-cCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 22222100 0 0000010 00000 1111 456799999999999999999999997532
Q ss_pred --CCCCcEEEEEEEcCCCCc---------hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHh
Q psy17062 272 --KPKSRLIILCIANTMDLP---------ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLK 325 (520)
Q Consensus 272 --~~~~~v~vI~~tn~~~~~---------~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~ 325 (520)
....++.||+++|+.... ...+.+.+.+||+...+.+..++.+.=..|..+.+.
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 124688999999985321 123578899999887778888888776666555543
No 286
>KOG2170|consensus
Probab=98.48 E-value=3.8e-06 Score=79.48 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=85.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcC---CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCCChHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQS---TTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIPEPKRAYSR 215 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~---~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~ 215 (520)
.+.|+--..+.|...+...+... .+-.+=++|++||||..+++.+|+.+...+.. .+...++....+..+..+-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~- 161 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED- 161 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH-
Confidence 36677767777777777765543 44556699999999999999999998766421 11112233333333322211
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC----CCCCcEEEEEEEcC
Q psy17062 216 ILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----KPKSRLIILCIANT 285 (520)
Q Consensus 216 i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----~~~~~v~vI~~tn~ 285 (520)
+ ..+....+..... .....++|+||+|.|.+.-.+.|..+|+.+. ....+.++|..+|.
T Consensus 162 ----Y------k~eL~~~v~~~v~-~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 162 ----Y------KEELKNRVRGTVQ-ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred ----H------HHHHHHHHHHHHH-hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 0 0112223333322 2578899999999999988889999998652 23456788888876
No 287
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.47 E-value=1.8e-07 Score=95.28 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHHHH---------hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLL---------SKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~---------~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++.|.+.....+...+. ..++..++.++|||||||||||++|+++|+++.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 44555555555544433 234467899999999999999999999998764
No 288
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.46 E-value=1.1e-06 Score=93.59 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHH---Hc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERH---FT 239 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~---~~ 239 (520)
..++++|.|+.|+||+++++.+...+.. ..+|+.+..... ...++|. -++...|... +.
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~t----------~~~L~Gg----~Dl~~~l~~g~~~~~ 85 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGIA----------DDRLLGG----LDLAATLRAGRPVAQ 85 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCCc----------HHHccCC----chHHhHhhcCCcCCC
Confidence 4578999999999999999999998733 235554433222 1233332 1122222211 11
Q ss_pred ----CCCCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcce
Q psy17062 240 ----RPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTR 305 (520)
Q Consensus 240 ----~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~ 305 (520)
......||||||++.+....++.|++.++.-. ....++.+|++-|..+.. ..+.+++..||...
T Consensus 86 pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~-~~L~~~lLDRf~l~- 163 (584)
T PRK13406 86 RGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED-ERAPAALADRLAFH- 163 (584)
T ss_pred CCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc-cCCCHHhHhheEEE-
Confidence 11456899999999999999999999998431 124678888863332222 34678899999875
Q ss_pred EEeCCCCHHHHH-------HHHHH--HHhCCCCCCHHHHHHHHHHcCCCCC-CHHHHHHHHHhh
Q psy17062 306 LMFKPYDHHQLQ-------EIVQN--RLKNNNCFHPDAVQLVARLEPPTSR-SEIFCANHYTNE 359 (520)
Q Consensus 306 i~~~~~~~~~~~-------~Il~~--~l~~~~~~~~~~l~~la~~~~~~~G-~~r~al~~l~~a 359 (520)
|.+..++..+.. .|+.. ++.+ ..+++..+++++..+....- ..|..+.+++.|
T Consensus 164 v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~-v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraA 226 (584)
T PRK13406 164 LDLDGLALRDAREIPIDADDIAAARARLPA-VGPPPEAIAALCAAAAALGIASLRAPLLALRAA 226 (584)
T ss_pred EEcCCCChHHhcccCCCHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 888887765432 23322 2222 67889999988877655432 445555454444
No 289
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.9e-07 Score=87.53 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
..+.|+++..+.+..++..+.. ...-..+|||||||.|||+||..||+|++-+++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 4578888888888888877655 566678999999999999999999999987654
No 290
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.45 E-value=2.3e-07 Score=95.33 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHH---------hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLL---------SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~---------~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.|.+.++..+..++. ..++..++.++|||||||||||++|++||+++..
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4455555555554443 2345678999999999999999999999998753
No 291
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.44 E-value=1.3e-06 Score=92.12 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++..+|+.||||||||+|+-..+.+..++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ 290 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN 290 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 55669999999999999999998877553
No 292
>KOG0989|consensus
Probab=98.43 E-value=2.4e-07 Score=87.75 Aligned_cols=48 Identities=33% Similarity=0.394 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.+++.....+...+.. . -.-.+|||||||||||.+|++.|.+|+-
T Consensus 36 de~~gQe~vV~~L~~a~~~--~--~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--R--ILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--c--CCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4677888888888777765 2 3345999999999999999999999976
No 293
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.42 E-value=2.3e-07 Score=94.42 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHhhh---------cCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|.+.++..+..++...+ +..++.++|||||||||||++|+++|+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 467888888888877665433 3577899999999999999999999997653
No 294
>PRK06851 hypothetical protein; Provisional
Probab=98.41 E-value=7.3e-06 Score=81.95 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
....++|.|+||+|||++++.+++.+... +..+-.+.|..
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~---g~~Ve~~~~~~ 68 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEK---GYDVEFLHCSS 68 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEcCC
Confidence 44668999999999999999999999765 55555555544
No 295
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.41 E-value=2.5e-07 Score=90.82 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=28.7
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++.++|.+++||||||||||++|++||+++.
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4579999999999999999999999999875
No 296
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.41 E-value=1.9e-06 Score=89.89 Aligned_cols=140 Identities=20% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc----------------cCCChHHHHHHHHHHHhcCCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL----------------SIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~----------------~~~~~~~~~~~i~~~l~g~~~ 225 (520)
..+.+++|+|++|+|||++++.+...+..... -..+++... .+.+|..... ...++|...
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g--~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s--~~~l~GGg~ 283 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSN--EEALESAAILSLVNAESVQKQWRQRPFRSPHHSAS--LTAMVGGGA 283 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCC--cEEEecchhhhhhccccccCCcCCCCccCCCccch--HHHHhCCCc
Confidence 34578999999999999999999987643321 112222110 0111111000 111222110
Q ss_pred ChHHHHHHHH-HHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC----------CCCcEEEEEEEcCCCC---ch-
Q psy17062 226 PPEQAKAMLE-RHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK----------PKSRLIILCIANTMDL---PE- 290 (520)
Q Consensus 226 ~~~~~~~~l~-~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~----------~~~~v~vI~~tn~~~~---~~- 290 (520)
. .. ..+.. ....+|||||++.+....++.|.+.|+.... ...++.+|+++|.... ..
T Consensus 284 ~-------~~pG~l~~-A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~ 355 (506)
T PRK09862 284 I-------PGPGEISL-AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN 355 (506)
T ss_pred e-------ehhhHhhh-ccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCC
Confidence 0 00 11111 4667999999999999889999999864321 2457899999997531 00
Q ss_pred -------------hhhhhhhhccCCcceEEeCCCCHH
Q psy17062 291 -------------RTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 291 -------------~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
..+..++..||+.. +.+++++.+
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plLDRfdL~-v~v~~~~~~ 391 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFLDRFDLS-LEIPLPPPG 391 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHHhhccEE-EEeCCCCHH
Confidence 12566888999875 788877543
No 297
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.38 E-value=1.6e-06 Score=81.45 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
-+.-|...++++.+.+..... .....+||.||.|.||+.+++.+.+.-.......-.||++||..+...... +.
T Consensus 185 giatrnp~fnrmieqierva~-rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~am-----sa 258 (531)
T COG4650 185 GIATRNPHFNRMIEQIERVAI-RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAM-----SA 258 (531)
T ss_pred cccccChHHHHHHHHHHHHHh-hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHH-----HH
Confidence 355667777777777777533 333459999999999999999988654444333668999999988654432 23
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHh
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEY 269 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~ 269 (520)
++|.-...-.....-+..+.......+||+|||..|....|.+|+..++.
T Consensus 259 lfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaiee 308 (531)
T COG4650 259 LFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEE 308 (531)
T ss_pred HHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHh
Confidence 33331111000111112222224678999999999999999999999985
No 298
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.34 E-value=1.9e-07 Score=91.69 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.|++..+.. -..+...+..+.-.+++||||||||||++|+.||..++-+
T Consensus 26 ~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 26 VVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred hcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc
Confidence 4444443322 2234455666677789999999999999999999987654
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.33 E-value=5.1e-07 Score=90.73 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH---hcCCCChHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL---LNVDAPPEQAKAMLERHF 238 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l---~g~~~~~~~~~~~l~~~~ 238 (520)
..+.++||||++|+|||.|...+.+.+........+| ..+...+-..+ .|.......+. ..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF-----------h~Fm~~vh~~l~~~~~~~~~l~~va---~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF-----------HEFMLDVHSRLHQLRGQDDPLPQVA---DELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccc-----------cHHHHHHHHHHHHHhCCCccHHHHH---HHHH
Confidence 4678999999999999999999998874321111111 22333332222 22222222222 2222
Q ss_pred cCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 239 TRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
....||+|||++.-+..+.-+|..+|+.+- ..++++|+|+|..
T Consensus 126 ---~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 126 ---KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNRP 168 (362)
T ss_pred ---hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCCC
Confidence 345699999999887777777888888764 5688999999975
No 300
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.32 E-value=4.2e-06 Score=89.12 Aligned_cols=42 Identities=19% Similarity=0.070 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
..+..+||+|+||+|||+++..++....... +-.+++++...
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~--ge~~lyis~ee 70 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKRF--DEPGVFVTFEE 70 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCEEEEEccC
Confidence 3457799999999999999999987654432 34556665544
No 301
>KOG0651|consensus
Probab=98.32 E-value=3.3e-07 Score=86.77 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=30.3
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++..+++++|.++|||||||||||++|++||..+.
T Consensus 157 lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg 191 (388)
T KOG0651|consen 157 LFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG 191 (388)
T ss_pred hccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC
Confidence 34456689999999999999999999999998763
No 302
>KOG0739|consensus
Probab=98.31 E-value=4.5e-07 Score=85.26 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCCCCCCChHHHhHhhcCCCCC-CCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 440 TAPLTPSTPLQLARESLHLSRV-PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+-|.+..+++.+++.|....+ |-.++.- |. -..+|=.||||||||||||+-||||||++-+
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPql----------Ft--GkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQL----------FT--GKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhh----------hc--CCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 3456677778888888776532 2222111 11 1145667899999999999999999999854
No 303
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.31 E-value=9.6e-05 Score=73.15 Aligned_cols=198 Identities=10% Similarity=0.128 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc-----------------CCChHHH
Q psy17062 150 SIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS-----------------IPEPKRA 212 (520)
Q Consensus 150 ~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~-----------------~~~~~~~ 212 (520)
+|.+.|.......+...++|+|++|||||+++.++....... +..+++|.... ..+--..
T Consensus 9 el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~---~wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~~ 85 (309)
T PF10236_consen 9 ELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYAREN---GWIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPMY 85 (309)
T ss_pred HHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhC---CEEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHHH
Confidence 445566665566777889999999999999998888776655 66666664321 0000011
Q ss_pred HHHHHHHHh------------------c--CCC------------------ChHHHHHHHHHHHcCC-C-CceEEEEcCC
Q psy17062 213 YSRILELLL------------------N--VDA------------------PPEQAKAMLERHFTRP-H-GPCVLLIDEL 252 (520)
Q Consensus 213 ~~~i~~~l~------------------g--~~~------------------~~~~~~~~l~~~~~~~-~-~~~vLiiDEi 252 (520)
...++..+. + ... ........+.+.+... . .|.++.||++
T Consensus 86 a~~~L~~~~~~N~~~L~~i~~s~~~~~~~~~~~~~g~tL~dLv~~g~~~~~~a~~~~~~l~~EL~~~~~~~PVL~avD~~ 165 (309)
T PF10236_consen 86 AAKWLKKFLKANEELLKKIKLSKDYKWSKRESTPKGSTLLDLVEQGINDPKYAWDVFQALIRELKAQSKRPPVLVAVDGF 165 (309)
T ss_pred HHHHHHHHHHHhHHHHHhccccccccccccccCCCCCCHHHHHHhhcccchhHHHHHHHHHHHHHhcccCCceEEEehhh
Confidence 112222221 0 000 0112333444444444 4 6899999999
Q ss_pred ccccccC--------------hHHHHHHHHh--cC--CCCCcEEE-EEEEcCCCCch-hhhhhhhhccC-----------
Q psy17062 253 DYLCNKR--------------QDVIYNILEY--LN--KPKSRLII-LCIANTMDLPE-RTLKGKVSSRM----------- 301 (520)
Q Consensus 253 d~l~~~~--------------~~~L~~ll~~--~~--~~~~~v~v-I~~tn~~~~~~-~~l~~~l~sR~----------- 301 (520)
+.+.... ..+...+++. .. ..++.+++ +.++....... ..+...+..+-
T Consensus 166 n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~ 245 (309)
T PF10236_consen 166 NALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEGFPHLDPYVKR 245 (309)
T ss_pred HHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccCCCCCCCcccc
Confidence 9998752 1233444444 11 12233322 33332211111 11222222211
Q ss_pred ---------CcceEEeCCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 302 ---------GLTRLMFKPYDHHQLQEIVQNRLKNN----NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 302 ---------~~~~i~~~~~~~~~~~~Il~~~l~~~----~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
.++.|.++.++.+|...+++.+.... ...++...+.+.-. ..|+++...
T Consensus 246 d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~---s~GNp~el~ 307 (309)
T PF10236_consen 246 DPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLS---SNGNPRELE 307 (309)
T ss_pred cHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHh---cCCCHHHhc
Confidence 12369999999999999999988764 13445566666554 678887753
No 304
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.30 E-value=8.1e-07 Score=89.12 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+..++..... ..++.++|||||||||||++|+++|+++..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 4688999999888877766544 456678999999999999999999999754
No 305
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=1.7e-05 Score=68.44 Aligned_cols=27 Identities=37% Similarity=0.666 Sum_probs=25.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
..+.|+|+||+||||++..+++.|...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 469999999999999999999999876
No 306
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.28 E-value=1.1e-06 Score=87.20 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+.|++..+..+..++..... ...+.+++||||||||||++|+++|+++...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3578899988888877765444 3445679999999999999999999998643
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.28 E-value=1.3e-06 Score=84.74 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
...++|||||||||||++|+++|+.+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456999999999999999999998854
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.5e-05 Score=80.70 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI---GDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFT 239 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~---~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~ 239 (520)
.+..++|+||+|+||||++..+|..+.... +..+.++.+++.......+ +.. +....|-++........+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ-L~~-~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ-IQT-YGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH-HHH-HhhcCCcceEeeCcHHHHHHHHH
Confidence 356899999999999999999998876432 1145566666554333222 222 22222433332233344455444
Q ss_pred CCCCceEEEEcCCccccccCh--HHHHHHHHhcCCCCCcEEEEEEEc-CCCCchhhhhhhhhccCCcceEEeCCCCHHH
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQ--DVIYNILEYLNKPKSRLIILCIAN-TMDLPERTLKGKVSSRMGLTRLMFKPYDHHQ 315 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~--~~L~~ll~~~~~~~~~v~vI~~tn-~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~ 315 (520)
......+||||.+..+..... ..+..+++... ....+.++..++ ........+ .++ +.+.+..+-|..+|...
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~~~~~~~-~~~-~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-RDAEFHLAVSSTTKTSDVKEIF-HQF-SPFSYKTVIFTKLDETT 326 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHHHHHHHH-HHh-cCCCCCEEEEEeccCCC
Confidence 446789999999998864321 23444444322 122333443232 222111111 111 12344567777777644
No 309
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.26 E-value=9.6e-06 Score=72.14 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=63.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhc--------CC--CChHHHHHHHHH
Q psy17062 167 MYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLN--------VD--APPEQAKAMLER 236 (520)
Q Consensus 167 lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g--------~~--~~~~~~~~~l~~ 236 (520)
++|+|++|+|||+++..++..+... +..++++++................... .. ............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 6899999999999999999988664 5677777776543321110000000000 00 000111111112
Q ss_pred HHcCCCCceEEEEcCCccccccC-----------hHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 237 HFTRPHGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 237 ~~~~~~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.+.....+.+|+|||+..+.... .+.+..+++... ..++.+|++++...
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~vv~~~~~~~ 138 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR--KGGVTVIFTLQVPS 138 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh--cCCceEEEEEecCC
Confidence 22223688999999999875432 234444444332 34666666666554
No 310
>KOG0744|consensus
Probab=98.24 E-value=4.5e-07 Score=86.24 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHHhcCCC
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKF 520 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~~~~~~~ 520 (520)
.-|||.||||||||.|+||+|+.|.=|.+++|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCcc
Confidence 34899999999999999999999988877754
No 311
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.19 E-value=1.7e-06 Score=91.67 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=27.0
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+..++.++|||||||||||++|++||.++.
T Consensus 84 g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 84 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 467888999999999999999999998764
No 312
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.19 E-value=8.1e-05 Score=76.68 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeE
Q psy17062 126 QLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFV 197 (520)
Q Consensus 126 ~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~--------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~ 197 (520)
...++......++..+..++..++.+.+.|...+.. ..+..++|+|++|+||||++..+|..+... +..
T Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~---g~k 125 (437)
T PRK00771 49 KSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK---GLK 125 (437)
T ss_pred HHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc---CCe
Confidence 334433333445555666666666666666554332 246789999999999999999999988764 455
Q ss_pred EEEEccccCCC-hHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHcCCCCceEEEEcCCccccc
Q psy17062 198 YVEMNALSIPE-PKRAYSRILELLLNVDAP----PEQAKAMLERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 198 ~i~v~~~~~~~-~~~~~~~i~~~l~g~~~~----~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+..++|..+.. ....+..+...+ +.+.. .......+...+.......+||||....+..
T Consensus 126 V~lV~~D~~R~aa~eQL~~la~~~-gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 126 VGLVAADTYRPAAYDQLKQLAEKI-GVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL 189 (437)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHc-CCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccc
Confidence 55566544432 122233333332 22111 1122333444444443458999999977654
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.19 E-value=4.1e-05 Score=82.13 Aligned_cols=196 Identities=11% Similarity=0.139 Sum_probs=119.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC-CChHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI-PEPKRAYSRI 216 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~-~~~~~~~~~i 216 (520)
|...+-|...++.+.+ .....-++|+-|.|.||||++-.+++.+.+ +..+.++++.+- .++..++..+
T Consensus 18 ~~~~v~R~rL~~~L~~-------~~~~RL~li~APAGfGKttl~aq~~~~~~~----~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRPRLLDRLRR-------ANDYRLILISAPAGFGKTTLLAQWRELAAD----GAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccHHHHHHHhc-------CCCceEEEEeCCCCCcHHHHHHHHHHhcCc----ccceeEeecCCccCCHHHHHHHH
Confidence 3344556555554432 234467999999999999999999873322 556666666554 5678888888
Q ss_pred HHHHhcC--CCC-----------hHHHHHHHHHHHc---CCCCceEEEEcCCccccccCh-HHHHHHHHhcCCCCCcEEE
Q psy17062 217 LELLLNV--DAP-----------PEQAKAMLERHFT---RPHGPCVLLIDELDYLCNKRQ-DVIYNILEYLNKPKSRLII 279 (520)
Q Consensus 217 ~~~l~g~--~~~-----------~~~~~~~l~~~~~---~~~~~~vLiiDEid~l~~~~~-~~L~~ll~~~~~~~~~v~v 279 (520)
+..+..- ..+ .......+...|. ...+|++|||||.|.+..... ..|..+++. ...++.+
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~l 163 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTL 163 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEE
Confidence 7777411 000 1112223333333 337899999999999987643 445556653 3568888
Q ss_pred EEEEcCCCCchhhhhhhhhccC-CcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 280 LCIANTMDLPERTLKGKVSSRM-GLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 280 I~~tn~~~~~~~~l~~~l~sR~-~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
|.+|.......-. .-++..-+ .+. -.-=.++.++..+++..... ..++...+..|...+.|+.+.++-
T Consensus 164 vv~SR~rP~l~la-~lRlr~~llEi~-~~~Lrf~~eE~~~fl~~~~~--l~Ld~~~~~~L~~~teGW~~al~L 232 (894)
T COG2909 164 VVTSRSRPQLGLA-RLRLRDELLEIG-SEELRFDTEEAAAFLNDRGS--LPLDAADLKALYDRTEGWAAALQL 232 (894)
T ss_pred EEEeccCCCCccc-ceeehhhHHhcC-hHhhcCChHHHHHHHHHcCC--CCCChHHHHHHHhhcccHHHHHHH
Confidence 8888765433210 00111111 000 01113688999999887775 456788888888887776555444
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.18 E-value=4.4e-06 Score=77.15 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC---
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR--- 240 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~--- 240 (520)
....+|.|+||||||++++.+.+.+... +..++.+....- ....+... .|.. ...+...+......
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~-----Aa~~L~~~-~~~~--a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNK-----AAKELREK-TGIE--AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHH-----HHHHHHHH-HTS---EEEHHHHTTEECCEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHH-----HHHHHHHh-hCcc--hhhHHHHHhcCCccccc
Confidence 3568899999999999999999888765 555555433221 11112122 1211 11111111111110
Q ss_pred ----CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 241 ----PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 241 ----~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
.....+|||||+..+... .+..+++.......+++++|
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~---~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSR---QLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHH---HHHHHHHHS-T-T-EEEEEE
T ss_pred ccccCCcccEEEEecccccCHH---HHHHHHHHHHhcCCEEEEEC
Confidence 134579999999999754 55566665544456666666
No 315
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=8.9e-06 Score=88.85 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.8
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++..+.|.||+|+|||+|.++|+-.+
T Consensus 333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345688889999999999999999998654
No 316
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.16 E-value=3.4e-06 Score=83.55 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHHhhhc--CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~--~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|.++.++.+..++..... .....-++|+||||||||++|++||+.|.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578888999999988887765 223455899999999999999999999987
No 317
>PRK04195 replication factor C large subunit; Provisional
Probab=98.15 E-value=2.6e-06 Score=89.93 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++.....+..++.......++..+|||||||||||++|++||+++.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888777667788899999999999999999999874
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=1.7e-05 Score=85.13 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.4
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++..+.|.||+|+|||+|.+.|+-.+
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 446678889999999999999999998543
No 319
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=9.5e-06 Score=67.04 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=23.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 167 MYISGVPGTGKTATVHAVMRKLKQEI 192 (520)
Q Consensus 167 lLl~G~~GtGKT~la~~la~~l~~~~ 192 (520)
|+|+|+||+|||++++.+++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999997654
No 320
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.14 E-value=1.6e-06 Score=99.94 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.2
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++..+|.||||+||||||||+||||||.+..
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 455678999999999999999999999998753
No 321
>KOG0478|consensus
Probab=98.13 E-value=3.9e-06 Score=87.27 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=87.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--- 241 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--- 241 (520)
-|+||+|.||||||.+++.+++.+. +-+|.++..-. -.|.......-. .-++++.+.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~p-------Rg~yTSGkGsS------------avGLTayVtrd~-dtkqlVLesGAL 522 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLP-------RGVYTSGKGSS------------AVGLTAYVTKDP-DTRQLVLESGAL 522 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCC-------cceeecCCccc------------hhcceeeEEecC-ccceeeeecCcE
Confidence 4799999999999999999998763 22344432211 001110000000 000111111
Q ss_pred --CCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcEEEEEEEcCCCCc--------h-hhhhhhhhcc
Q psy17062 242 --HGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRLIILCIANTMDLP--------E-RTLKGKVSSR 300 (520)
Q Consensus 242 --~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v~vI~~tn~~~~~--------~-~~l~~~l~sR 300 (520)
....|..|||+|.|....+++|++.|+... ..+.+..||+++|+...- + -.+.+.|.||
T Consensus 523 VLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSR 602 (804)
T KOG0478|consen 523 VLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSR 602 (804)
T ss_pred EEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhh
Confidence 577899999999999999999999998532 335677788889864321 1 1356889999
Q ss_pred CCcceEEeCCCCHHHHHHHHHH
Q psy17062 301 MGLTRLMFKPYDHHQLQEIVQN 322 (520)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~Il~~ 322 (520)
|+...+-|.++++..=..+..+
T Consensus 603 FDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 603 FDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred hcEEEEEecCcchhHHHHHHHH
Confidence 9887777888877643444333
No 322
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00022 Score=66.26 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCC-CcHHHHHHHHHHHHHHHhCC---CeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPG-TGKTATVHAVMRKLKQEIGD---KFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERH 237 (520)
Q Consensus 162 ~~~~~lLl~G~~G-tGKT~la~~la~~l~~~~~~---~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~ 237 (520)
.-....||.|..+ +||..++..+++.+...... ...+..+....... -.+.....+++.+.....
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~-----------~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSAT-----------SNAKNISIEQIRKLQDFL 81 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEecccccc-----------ccCCcccHHHHHHHHHHH
Confidence 4456799999998 99999999988887553211 12222222110000 001223334444433322
Q ss_pred HcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHH
Q psy17062 238 FTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQ 315 (520)
Q Consensus 238 ~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~ 315 (520)
.... +...|++||++|.|.....+.|+.+|+++ ..++.+|.+++... .+.+.+.|||+. +.|+.+....
T Consensus 82 ~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEP---P~~t~fILit~~~~----~LLpTIrSRCq~--i~~~~p~~~~ 152 (263)
T PRK06581 82 SKTSAISGYKVAIIYSAELMNLNAANSCLKILEDA---PKNSYIFLITSRAA----SIISTIRSRCFK--INVRSSILHA 152 (263)
T ss_pred hhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCC---CCCeEEEEEeCChh----hCchhHhhceEE--EeCCCCCHHH
Confidence 2222 67889999999999999999999999865 55667777666544 356788999965 9999999988
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy17062 316 LQEIVQNRLKNNNCFHPDAVQLVARL 341 (520)
Q Consensus 316 ~~~Il~~~l~~~~~~~~~~l~~la~~ 341 (520)
..++....+. +..+...+++|.+.
T Consensus 153 ~~e~~~~~~~--p~~~~~~l~~i~~~ 176 (263)
T PRK06581 153 YNELYSQFIQ--PIADNKTLDFINRF 176 (263)
T ss_pred HHHHHHHhcc--cccccHHHHHHHHH
Confidence 8888777776 45566667777775
No 323
>PRK13695 putative NTPase; Provisional
Probab=98.12 E-value=1.5e-05 Score=72.10 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=76.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC-ChHHH-------H---HHHHHHHhc-CC-------CC
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP-EPKRA-------Y---SRILELLLN-VD-------AP 226 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~-~~~~~-------~---~~i~~~l~g-~~-------~~ 226 (520)
.++|+|++|+||||+++.+++.+... +..+.-+.+.... ..... . ...+..... .. ..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~---G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE---GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEe
Confidence 47899999999999999999887652 3332211111100 00000 0 000000000 00 00
Q ss_pred hHHHHHHHHHHHcCC-CCceEEEEcCCccccccC---hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCC
Q psy17062 227 PEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKR---QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMG 302 (520)
Q Consensus 227 ~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~---~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~ 302 (520)
............... ..+.+|+|||+..+.... .+.+..+++ .+..+|++++... .. .+..++..|.+
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~------~~~~~i~v~h~~~-~~-~~~~~i~~~~~ 150 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD------SEKPVIATLHRRS-VH-PFVQEIKSRPG 150 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh------CCCeEEEEECchh-hH-HHHHHHhccCC
Confidence 111222222222222 578899999976543322 233333433 2346677777642 22 24567888887
Q ss_pred cceEEeCCCCHHHHHHHHHHHH
Q psy17062 303 LTRLMFKPYDHHQLQEIVQNRL 324 (520)
Q Consensus 303 ~~~i~~~~~~~~~~~~Il~~~l 324 (520)
...+++.+-+.+++...+..++
T Consensus 151 ~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 GRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred cEEEEEcchhhhhHHHHHHHHH
Confidence 7778888777777766665544
No 324
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.11 E-value=0.00027 Score=71.19 Aligned_cols=168 Identities=14% Similarity=0.223 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHH-HHHHHHHHHHhCCCeEEEEEccccCC---ChHHHHHHHHHH
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATV-HAVMRKLKQEIGDKFVYVEMNALSIP---EPKRAYSRILEL 219 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la-~~la~~l~~~~~~~~~~i~v~~~~~~---~~~~~~~~i~~~ 219 (520)
|.+.+++|..||.. .+...++|+||.|+||+.++ ..+.+. ...+++++|..+. +...++..+..+
T Consensus 1 R~e~~~~L~~wL~e----~~~TFIvV~GPrGSGK~elV~d~~L~~-------r~~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE----NPNTFIVVQGPRGSGKRELVMDHVLKD-------RKNVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhc----CCCeEEEEECCCCCCccHHHHHHHHhC-------CCCEEEEEChHhhhccChHHHHHHHHHh
Confidence 45567788888755 45578999999999999999 555553 4458899998664 344555555444
Q ss_pred H-----------------------hcCCCCh-----HHHH-------HHHHHHHc-------------------CC-CCc
Q psy17062 220 L-----------------------LNVDAPP-----EQAK-------AMLERHFT-------------------RP-HGP 244 (520)
Q Consensus 220 l-----------------------~g~~~~~-----~~~~-------~~l~~~~~-------------------~~-~~~ 244 (520)
+ .|+.... .+.. ..|+.+-. .. ...
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 4 2332221 1111 11111100 00 224
Q ss_pred eEEEEcCCccccccChHHHHHH-HHhc----CCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHH
Q psy17062 245 CVLLIDELDYLCNKRQDVIYNI-LEYL----NKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEI 319 (520)
Q Consensus 245 ~vLiiDEid~l~~~~~~~L~~l-l~~~----~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~I 319 (520)
-||+||.+.+-... .+.++.. .+|. ..+-.+| |+.|++..... .|...+.+|.. +.|.+...+.+.-++.
T Consensus 150 PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHV--IFlT~dv~~~k-~LskaLPn~vf-~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHV--IFLTDDVSYSK-PLSKALPNRVF-KTISLSDASPESAKQY 224 (431)
T ss_pred CEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEE--EEECCCCchhh-hHHHhCCCCce-eEEeecCCCHHHHHHH
Confidence 69999999776554 5555554 4664 2233444 44456554443 35666767754 5699999999999999
Q ss_pred HHHHHhCC
Q psy17062 320 VQNRLKNN 327 (520)
Q Consensus 320 l~~~l~~~ 327 (520)
+..+|...
T Consensus 225 V~~~L~~~ 232 (431)
T PF10443_consen 225 VLSQLDED 232 (431)
T ss_pred HHHHhccc
Confidence 99998753
No 325
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.11 E-value=3.6e-06 Score=84.63 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS----------QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+.|+++....+..++..+.. ..++.+|||+||||||||++|++||+.++-.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4688999988888877665321 2346899999999999999999999988543
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=5.2e-06 Score=81.21 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.+|||+||||||||++|+++|+.+.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4458999999999999999999999875
No 327
>PRK04296 thymidine kinase; Provisional
Probab=98.10 E-value=1e-05 Score=74.37 Aligned_cols=109 Identities=14% Similarity=0.265 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC------ChHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA------PPEQAKAMLERHF 238 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~------~~~~~~~~l~~~~ 238 (520)
...+++|++|+|||+++..++..+... +..++.+... +.. ......+.+.+ |... ........+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~~-~d~-~~~~~~i~~~l-g~~~~~~~~~~~~~~~~~~~~-- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKPA-IDD-RYGEGKVVSRI-GLSREAIPVSSDTDIFELIEE-- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEecc-ccc-cccCCcEecCC-CCcccceEeCChHHHHHHHHh--
Confidence 457899999999999999999988665 4455545321 110 00111122222 2111 11222222222
Q ss_pred cCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 239 TRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
......+|+|||++.+... .+..+++.+. ..++.+|++....+
T Consensus 75 -~~~~~dvviIDEaq~l~~~---~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKE---QVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHH---HHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2246789999999887442 2344444332 33455665555433
No 328
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=5.4e-06 Score=81.10 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.+|||+||||||||++|+++|+.+.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445999999999999999999998764
No 329
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.09 E-value=2.1e-06 Score=76.86 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHH
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQL 316 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~ 316 (520)
..+.+|+||||..|-.........+.+.+. ++..+|++-...... .+...+.+|-+...+.+.+-+.+.+
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~--~~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDN--PFLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--S--CCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCc--HHHHHHHhCCCcEEEEeChhHHhhH
Confidence 367899999999987766554444444332 334466655544211 2456777776666677776665544
No 330
>CHL00176 ftsH cell division protein; Validated
Probab=98.08 E-value=4.3e-06 Score=90.12 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.8
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+...+.+||||||||||||++||+||.++.
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999763
No 331
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.08 E-value=7.1e-06 Score=87.64 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=93.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCC--------CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTT--------GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~--------~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
.++.|.+.--+.|.-.|-.......+ -++||.|.||||||.+.+.+++.+ ..-+|.++.....
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-------Pr~vytsgkgss~-- 356 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-------PRGVYTSGKGSSA-- 356 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC-------CceEEEccccccc--
Confidence 45778877555554444332221111 479999999999999999999875 2334554432211
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-----CCceEEEEcCCccccccChHHHHHHHHhcC----------CCCC
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP-----HGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKS 275 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~ 275 (520)
.|.......-.. ...+..++ ..+.|++|||+|.|.......|+..|+... ..+.
T Consensus 357 ----------~GLTAav~rd~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 357 ----------AGLTAAVVRDKV-TGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred ----------cCceeEEEEccC-CCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecch
Confidence 011110000000 01111122 678899999999999999999999998642 1234
Q ss_pred cEEEEEEEcCCCC-------c--hhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 276 RLIILCIANTMDL-------P--ERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 276 ~v~vI~~tn~~~~-------~--~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
++.+++++|+..- + .-.+...+.|||+...+....++.+
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~ 473 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEE 473 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCcc
Confidence 5667788887541 0 1124677999998765555566554
No 332
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=82.32 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCceEEEEcCCccc-cccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 242 HGPCVLLIDELDYL-CNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 242 ~~~~vLiiDEid~l-~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.+|.+||.||.-.. +...|..+++++..+. ...++.+|.+|.+..
T Consensus 171 ~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~-~e~g~a~l~ITHDl~ 216 (539)
T COG1123 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQ-RELGMAVLFITHDLG 216 (539)
T ss_pred CCCCEEEECCCccccCHHHHHHHHHHHHHHH-HHcCcEEEEEcCCHH
Confidence 78999999999554 4456777777776554 345778888888765
No 333
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.1e-06 Score=87.36 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~---~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK---NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4677887776666554442 345556899999999999999999999864
No 334
>KOG1808|consensus
Probab=98.07 E-value=7.1e-06 Score=95.20 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=100.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCce
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPC 245 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~ 245 (520)
.+||.||.|+|||.++..+++.. +..++.++-...++-..++..-...-.|.. .+ .-.........++
T Consensus 442 pillqG~tssGKtsii~~la~~~------g~~~vrinnhehtd~qeyig~y~~~~~g~l-~f-----reg~LV~Alr~G~ 509 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHTDLQEYIGTYVADDNGDL-VF-----REGVLVQALRNGD 509 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh------ccCceehhccccchHHHHHHhhhcCCCCCe-ee-----ehhHHHHHHHhCC
Confidence 59999999999999999999999 889999999988874444332111111111 00 0011111115788
Q ss_pred EEEEcCCccccccChHHHHHHHHhcC-----------CCCCcEEEEEEEcCCCCch--hhhhhhhhccCCcceEEeCCCC
Q psy17062 246 VLLIDELDYLCNKRQDVIYNILEYLN-----------KPKSRLIILCIANTMDLPE--RTLKGKVSSRMGLTRLMFKPYD 312 (520)
Q Consensus 246 vLiiDEid~l~~~~~~~L~~ll~~~~-----------~~~~~v~vI~~tn~~~~~~--~~l~~~l~sR~~~~~i~~~~~~ 312 (520)
++|+||++.......++|..++++-. ..+..+.+.++-|...... ..+.+.|.+||.. ++|-...
T Consensus 510 ~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e--~~f~~~~ 587 (1856)
T KOG1808|consen 510 WIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIE--LHFDDIG 587 (1856)
T ss_pred EEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchh--hhhhhcC
Confidence 99999999999999999999998621 1233444455555544332 2346778888854 8888889
Q ss_pred HHHHHHHHHHHHhC
Q psy17062 313 HHQLQEIVQNRLKN 326 (520)
Q Consensus 313 ~~~~~~Il~~~l~~ 326 (520)
.++...|+..++..
T Consensus 588 e~e~~~i~~~~~~i 601 (1856)
T KOG1808|consen 588 EEELEEILEHRCGI 601 (1856)
T ss_pred chhhhhhhcccccC
Confidence 99999999888764
No 335
>PLN03025 replication factor C subunit; Provisional
Probab=98.06 E-value=4.8e-06 Score=83.17 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++.....+..++. .+...++|||||||||||++|+++|+++.
T Consensus 14 ~~~g~~~~~~~L~~~~~----~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 14 DIVGNEDAVSRLQVIAR----DGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HhcCcHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 45667666666655443 23334699999999999999999999984
No 336
>KOG0927|consensus
Probab=98.06 E-value=4.3e-05 Score=78.00 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~ 290 (520)
..|.+|+|||. .+|+...-.+|-..|..+. +.++|.++.+.+.++
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~d----~~~lVi~sh~QDfln 283 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD----RIILVIVSHSQDFLN 283 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHhcc----CceEEEEecchhhhh
Confidence 68999999998 7777777777888777443 224555566666544
No 337
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.06 E-value=4.6e-06 Score=83.92 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS----------QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+.|++.....+..++..+.. ...+.+|||+||||||||++|++||+.+.-+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4688999999998887765321 1235899999999999999999999988644
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.05 E-value=3.1e-05 Score=84.70 Aligned_cols=273 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-----CeEEEEEccccCCCh---------------------------
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-----KFVYVEMNALSIPEP--------------------------- 209 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-----~~~~i~v~~~~~~~~--------------------------- 209 (520)
..+..+.|.|+.|+|||||++.++..+....+. +..+-++........
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISH 106 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred --------------------------HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--------CCceEEEEcCC-cc
Q psy17062 210 --------------------------KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--------HGPCVLLIDEL-DY 254 (520)
Q Consensus 210 --------------------------~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--------~~~~vLiiDEi-d~ 254 (520)
+.....+...+.+-..........|...-... ..|.||++||. ..
T Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~ 186 (635)
T PRK11147 107 LVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNH 186 (635)
T ss_pred HhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q ss_pred ccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHH
Q psy17062 255 LCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDA 334 (520)
Q Consensus 255 l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~ 334 (520)
|+......|..+|. .....||.++++........+.-+.=+-+. +..-.-+.++...--..+... ....
T Consensus 187 LD~~~~~~L~~~L~-----~~~~tvlivsHd~~~l~~~~d~i~~L~~G~--i~~~~g~~~~~~~~~~~~~~~----~~~~ 255 (635)
T PRK11147 187 LDIETIEWLEGFLK-----TFQGSIIFISHDRSFIRNMATRIVDLDRGK--LVSYPGNYDQYLLEKEEALRV----EELQ 255 (635)
T ss_pred cCHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhcCeEEEEECCE--EEEecCCHHHHHHHHHHHHHH----HHHH
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCC
Q psy17062 335 VQLVARLEPPTSRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSS 414 (520)
Q Consensus 335 l~~la~~~~~~~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
.+...+. +.+....+++.+.. .......-...........................+..
T Consensus 256 ~~~~~~~-------~~~~~~~~~~~~~a--------------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (635)
T PRK11147 256 NAEFDRK-------LAQEEVWIRQGIKA--------------RRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASR 314 (635)
T ss_pred HHHHHHH-------HHHHHHHHHhhhhh--------------hhhhHHHHHHHHHHhhhhhccccccCCceeEEeCCCCC
Q ss_pred CCCCCCCCCCcccccccCCCCCCccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEE
Q psy17062 415 HKPNVSTPSSIKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYIS 494 (520)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLy 494 (520)
.......-..+...+.-.+.+...+. ...++..+.|.
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il~~vsl-------------------------------------------~i~~Ge~~~l~ 351 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLVKDFSA-------------------------------------------QVQRGDKIALI 351 (635)
T ss_pred CCCceEEEeeeEEEECCeEEEcCcEE-------------------------------------------EEcCCCEEEEE
Q ss_pred cCCCCcHHHHHHHHH
Q psy17062 495 GVPGTGKTATVHAVM 509 (520)
Q Consensus 495 GPpGtGKT~lAkalA 509 (520)
||+|+|||+|.+.|+
T Consensus 352 G~NGsGKSTLlk~l~ 366 (635)
T PRK11147 352 GPNGCGKTTLLKLML 366 (635)
T ss_pred CCCCCcHHHHHHHHh
No 339
>PHA02774 E1; Provisional
Probab=98.05 E-value=2e-05 Score=82.05 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHH
Q psy17062 151 IHRFLLSKISQST-TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQ 229 (520)
Q Consensus 151 l~~~L~~~~~~~~-~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~ 229 (520)
+...|...+.+.+ -++++|+||||||||+++.++++.+. +..+.++|..+. ++
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~-----G~vi~fvN~~s~-----Fw---------------- 473 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNSKSH-----FW---------------- 473 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEECccc-----cc----------------
Confidence 3334444434333 46899999999999999999999983 334445665321 10
Q ss_pred HHHHHHHHHcCCCCceEEEEcCCcccc-ccChHHHHHHHHhcC----C---C---CCcEEEEEEEcCCCCchhhhhhhhh
Q psy17062 230 AKAMLERHFTRPHGPCVLLIDELDYLC-NKRQDVIYNILEYLN----K---P---KSRLIILCIANTMDLPERTLKGKVS 298 (520)
Q Consensus 230 ~~~~l~~~~~~~~~~~vLiiDEid~l~-~~~~~~L~~ll~~~~----~---~---~~~v~vI~~tn~~~~~~~~l~~~l~ 298 (520)
+.......|++|||+-.-. ..-...|..+|+... . . -..-.+|.|||..-..+ .--..|.
T Consensus 474 --------Lqpl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~-~~~~yL~ 544 (613)
T PHA02774 474 --------LQPLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAE-DRYKYLH 544 (613)
T ss_pred --------cchhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccc-hhhHHhh
Confidence 1111245699999992221 112346778887431 0 0 01234666777432222 1234677
Q ss_pred ccCCcceEEeCC
Q psy17062 299 SRMGLTRLMFKP 310 (520)
Q Consensus 299 sR~~~~~i~~~~ 310 (520)
+|+.. +.|+.
T Consensus 545 sRi~~--f~F~n 554 (613)
T PHA02774 545 SRITV--FEFPN 554 (613)
T ss_pred hhEEE--EECCC
Confidence 88744 66664
No 340
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.04 E-value=6.1e-06 Score=78.67 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC--ChH-------HHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA--PPE-------QAKA 232 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~--~~~-------~~~~ 232 (520)
+.+..++|.|++|+|||++++.+++.+.........++++-.....+...++..+...++-... +.. ....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999875431111224444444445667777766222221111 111 1111
Q ss_pred HHHHHHcCCCCceEEEEcCCcccccc
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
... .+...+...+|||||++.+...
T Consensus 94 ~a~-~~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 94 KAK-RLVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHH-HHHHCCCCEEEEEECHHHhhhh
Confidence 122 2223378899999999988654
No 341
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.03 E-value=5.3e-06 Score=85.17 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|+++.+..+...+. .+++|||+||||||||++|++||..+..
T Consensus 20 ~~i~gre~vI~lll~aal------ag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHc------cCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 478899998888877766 7788999999999999999999997754
No 342
>KOG2004|consensus
Probab=98.03 E-value=5.9e-06 Score=86.47 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=51.9
Q ss_pred ChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcC--CCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 447 TPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 447 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
-.+..++..|.. +..|.++.-++++.|+..+.-. ..+.=++|+||||+|||.+||.||+.|+|+|-
T Consensus 400 ~dl~~Ak~iLde-----DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 400 LDLARAKEILDE-----DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred hhHHHHHHhhcc-----cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 356778887776 5668888889999988875442 33334799999999999999999999998763
No 343
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.02 E-value=4.9e-06 Score=85.19 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHHhhhc---C---------CCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS---Q---------STTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~---~---------~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|++.....+...+..++. . .+..+|||+||||||||++|++||..+..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 578999888888766643222 1 14578999999999999999999987753
No 344
>PRK10536 hypothetical protein; Provisional
Probab=98.01 E-value=3.1e-05 Score=73.15 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+.++......+..+|.. ...+++.|++|||||+++.+++....... .+..+++.-
T Consensus 56 ~i~p~n~~Q~~~l~al~~------~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~R 111 (262)
T PRK10536 56 PILARNEAQAHYLKAIES------KQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTR 111 (262)
T ss_pred cccCCCHHHHHHHHHHhc------CCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeC
Confidence 355666666666666643 24799999999999999999998543211 455555543
No 345
>KOG0742|consensus
Probab=98.01 E-value=2.7e-06 Score=83.34 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
..+=.+||||||||||||++||-||..
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhh
Confidence 456677999999999999999999864
No 346
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.00 E-value=9.2e-06 Score=78.59 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhhc--CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 459 SRVPESLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+++.+.|+.++-++---.+ ..+. ...+.+||+.||||||||+||=+||++|..
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv-~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIV-KMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred eEcCCcccchHHHHHhhhHHH-HHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345677888877655433222 2222 346677999999999999999999999864
No 347
>KOG0480|consensus
Probab=98.00 E-value=2e-05 Score=81.60 Aligned_cols=172 Identities=20% Similarity=0.132 Sum_probs=101.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQST--------TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~--------~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
..+.|++..-..|.-.|........ -.+++|.|.||+||+.++++++.-+ .+-+|+.+..... .
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs-------PR~vYtsGkaSSa-A 416 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-------PRSVYTSGKASSA-A 416 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC-------CcceEecCccccc-c
Confidence 4577877766666555544322211 1479999999999999999999865 3445555533221 0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC----------CCCcEEEE
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK----------PKSRLIIL 280 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~----------~~~~v~vI 280 (520)
.+ ...+.....+.+-. ++..---.....|..|||+|.|...+|..|+..|+.... .+.+..||
T Consensus 417 GL----TaaVvkD~esgdf~---iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 417 GL----TAAVVKDEESGDFT---IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred cc----eEEEEecCCCCcee---eecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 00 00000000000000 000000015778999999999999999999999986432 23455577
Q ss_pred EEEcCCCCch---------hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHh
Q psy17062 281 CIANTMDLPE---------RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLK 325 (520)
Q Consensus 281 ~~tn~~~~~~---------~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~ 325 (520)
+++|+..-.. -.+..++.|||+.-.|-+..+++..-..|-++.+.
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence 7788754221 12457889999876677777777655555555443
No 348
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.9e-06 Score=85.93 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=50.6
Q ss_pred CChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcC--CCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 446 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
...+.++++.|.. ++-|-++.-+++..++...... ..+.=+||+||||+|||.|++.||+.++|.|
T Consensus 311 ~~Dl~~a~~iLd~-----dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 311 KLDLKKAEKILDK-----DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred hhhHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 3457788887775 4567778888888888765442 2223379999999999999999999998865
No 349
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.98 E-value=8.2e-06 Score=90.97 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=46.5
Q ss_pred hHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc--CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 448 PLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 448 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+..++..|.. .+.|.+...+.+..++..... ...+..+|||||||||||++|++||+.+...
T Consensus 310 ~~~~~~~~l~~-----~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 310 DLKRAKEILDE-----DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35555665543 577888888888887665433 2233469999999999999999999998644
No 350
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.8e-06 Score=86.83 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=35.6
Q ss_pred CCCChHHH---HHHHHHHHHh-----hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 464 SLPCREAE---FQSIHRFLLS-----KISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 464 ~~~~~~~~---~~~l~~~~~~-----~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
++.|.+++ +.++.+++.. .++.+-|.|+||+||||||||+||||+|-+.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 34444443 4444555553 2347899999999999999999999999764
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=97.97 E-value=0.00034 Score=69.64 Aligned_cols=89 Identities=26% Similarity=0.276 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh-HHHHHHHHHHHhcCCC-------ChHH-HHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP-KRAYSRILELLLNVDA-------PPEQ-AKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~-~~~~~~i~~~l~g~~~-------~~~~-~~~~ 233 (520)
.+..++|+|++|+||||++..++..+... +..++.+++..+... ...+......+ |-+. .... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~Dt~R~~a~eqL~~~a~~l-gv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAGDTFRAGAIEQLEEHAERL-GVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcCcHHHHHHHHHHHHHc-CCceecccCCCCHHHHHHHH
Confidence 35679999999999999999999988664 556666665544321 11222222222 2211 1111 1122
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+.... .....+||||....+..
T Consensus 215 i~~~~--~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 215 IEHAK--ARGIDVVLIDTAGRMHT 236 (336)
T ss_pred HHHHH--hCCCCEEEEECCCccCC
Confidence 22211 13567999999988864
No 352
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.96 E-value=8.6e-06 Score=82.94 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---C-----------CCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS---Q-----------STTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~---~-----------~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+..++. . ...++|||+||||||||++|++||..+.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4688999999988877643222 1 1246899999999999999999998764
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.96 E-value=0.00011 Score=61.39 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhc---CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCCC
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQ---STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIPE 208 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~---~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~~ 208 (520)
.|+|+.-..+.+.+.|...+.. ..+-.+-++|++|||||.+++.||+.+...+.. .+...++....+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~ 98 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPH 98 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCC
Confidence 4789988888888888887654 334456699999999999999999998876432 23333444444443
No 354
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.1e-06 Score=86.63 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
.+.|++...+.+.-.. . .+.++|++||||||||+++..+...|.
T Consensus 180 DV~GQ~~AKrAleiAA----A--GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 180 DVKGQEQAKRALEIAA----A--GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hhcCcHHHHHHHHHHH----h--cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 4677776655443322 2 235799999999999999998876653
No 355
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.95 E-value=4.7e-05 Score=69.67 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 167 MYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 167 lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
++|+|+||+|||+++..++...... +..+++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC
Confidence 7899999999999999998877654 5566677654
No 356
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.94 E-value=1.4e-05 Score=69.47 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 468 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++..+..+...+. ...+..++++||||||||+++++++..+.
T Consensus 3 ~~~~~~~i~~~~~----~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 3 QEEAIEALREALE----LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3344444444333 33567899999999999999999999874
No 357
>KOG4658|consensus
Probab=97.93 E-value=0.00022 Score=79.85 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=132.1
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
+|.+..++.+.+.|.. ...+.+=|||..|+||||+++.+.+........--.++++..+.-.+...+..+|+..+.
T Consensus 161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 8999999999888865 223778899999999999999999987522111123455656656778888888888775
Q ss_pred cCCCChH-----HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC-CCCCcEEEEEEEcCCCCchhhhhh
Q psy17062 222 NVDAPPE-----QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN-KPKSRLIILCIANTMDLPERTLKG 295 (520)
Q Consensus 222 g~~~~~~-----~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~-~~~~~v~vI~~tn~~~~~~~~l~~ 295 (520)
-...... .....+.+.+. .+..+|++|+|..=.. ...+.... ....+..++.||+..+....
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~--~krfllvLDDIW~~~d------w~~I~~~~p~~~~g~KvvlTTRs~~V~~~---- 304 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLE--GKRFLLVLDDIWEEVD------WDKIGVPFPSRENGSKVVLTTRSEEVCGR---- 304 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhc--cCceEEEEeccccccc------HHhcCCCCCCccCCeEEEEEeccHhhhhc----
Confidence 3222222 22233333333 6789999999954221 23333221 12234667778876553221
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhccC
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKSK 363 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~~ 363 (520)
...+. ..+.+.-++.++.-.++....-....-+...+..+|+.+...+|.+--|+..+..+...+
T Consensus 305 -~m~~~--~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K 369 (889)
T KOG4658|consen 305 -AMGVD--YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACK 369 (889)
T ss_pred -cccCC--ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCC
Confidence 11222 337888899999999999887654222333488888888888888888888887765543
No 358
>KOG1514|consensus
Probab=97.93 E-value=1.5e-05 Score=83.54 Aligned_cols=72 Identities=60% Similarity=0.897 Sum_probs=64.9
Q ss_pred ChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhcC
Q psy17062 447 TPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD 518 (520)
Q Consensus 447 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~~ 518 (520)
..+.+++..||.+.+|..+++|+.++..|..|+..++.. ..++.|++.|-||||||+++..|..+|+.....
T Consensus 380 S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQ 452 (767)
T ss_pred hHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhh
Confidence 568899999999999999999999999999999999998 555579999999999999999999999965443
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=5.1e-05 Score=76.23 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC-ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP-EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~-~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.+..++|.||+|+||||++..++..+....+ ...+..+.+..+. ...+.+.. +..+.|.+.........+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~EqL~~-~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGHEQLRI-FGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHHHHHHH-HHHHcCCceEecCCcccHHHHHHHh
Confidence 4678999999999999999999988654321 1233333333321 11222222 2233343322111111223333333
Q ss_pred CCceEEEEcCCcccc
Q psy17062 242 HGPCVLLIDELDYLC 256 (520)
Q Consensus 242 ~~~~vLiiDEid~l~ 256 (520)
....+|+||.+....
T Consensus 214 ~~~DlVLIDTaG~~~ 228 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ 228 (374)
T ss_pred cCCCEEEEcCCCCCc
Confidence 567899999998664
No 360
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.92 E-value=1.7e-05 Score=78.14 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 468 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+...+.....++........+.|++||||||||||.||.|||+++.+
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33344444455554433345678999999999999999999999974
No 361
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.91 E-value=8.9e-05 Score=79.90 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQ 190 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~ 190 (520)
..+..+.|.|+.|+|||||++.++..+..
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~p 57 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDKE 57 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45667999999999999999999987643
No 362
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.91 E-value=4e-05 Score=73.58 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHcCCCC
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-------NCFHPDAVQLVARLEPPTS 346 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-------~~~~~~~l~~la~~~~~~~ 346 (520)
.+.+++||+|.. .+.+.+.+++.|||.+ +.|.+++.+++..+|++.+... ..+++++++.|+.. ..
T Consensus 6 ~G~i~LIGATTE--NP~f~vn~ALlSR~~v--~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~---a~ 78 (300)
T PRK14700 6 SGKIILIGATTE--NPTYYLNDALVSRLFI--LRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNY---NE 78 (300)
T ss_pred CCcEEEEeecCC--CccceecHhhhhhhhe--eeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHh---cC
Confidence 678889987754 4555689999999966 9999999999999999998641 46899999999998 99
Q ss_pred CCHHHHHHHHHhhhc
Q psy17062 347 RSEIFCANHYTNEKK 361 (520)
Q Consensus 347 G~~r~al~~l~~a~~ 361 (520)
||.|.++++|+.+..
T Consensus 79 GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 79 GDCRKILNLLERMFL 93 (300)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999764
No 363
>PRK12377 putative replication protein; Provisional
Probab=97.91 E-value=2e-05 Score=75.04 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+++|+||||||||.||.|||+++.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999754
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=97.91 E-value=6.2e-05 Score=82.86 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=25.9
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++..+.|.||+|+|||+|.++|+..+
T Consensus 530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 530 FGIDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 446688889999999999999999998654
No 365
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.91 E-value=0.00012 Score=70.53 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++--++.++.|.+.-+. ...+.+++||.|..|+||+++++.++.-. +..++.+......+..
T Consensus 10 lVlf~~ai~hi~ri~Rv--L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~---------- 71 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRV--LSQPRGHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIK---------- 71 (268)
T ss_dssp ----HHHHHHHHHHHHH--HCSTTEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHH----------
T ss_pred eeeHHHHHHHHHHHHHH--HcCCCCCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHH----------
Confidence 45556666666655544 34567899999999999999999888766 8888888765433211
Q ss_pred hcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHH-----------------------------------
Q psy17062 221 LNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDV----------------------------------- 262 (520)
Q Consensus 221 ~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~----------------------------------- 262 (520)
+..+.++..+..+ +.+.+++|+|-+.....-.+.
T Consensus 72 --------~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~ 143 (268)
T PF12780_consen 72 --------DFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGI 143 (268)
T ss_dssp --------HHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT-
T ss_pred --------HHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCC
Confidence 1233344443333 567788887765543321111
Q ss_pred ------HHHHHHhcCCCCCcEEEEEEEcCCCC--chh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHH
Q psy17062 263 ------IYNILEYLNKPKSRLIILCIANTMDL--PER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPD 333 (520)
Q Consensus 263 ------L~~ll~~~~~~~~~v~vI~~tn~~~~--~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~ 333 (520)
+++++-.. -..++-||.+-++... ..+ ..-|.+.++|.+ .-|.+++.+.+..+-...++.....+++
T Consensus 144 ~~~~~~~~~~F~~r--vr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctI--dW~~~W~~eaL~~Va~~~l~~~~~~~~~ 219 (268)
T PF12780_consen 144 SDSRESLYEFFIER--VRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTI--DWFDPWPEEALLSVANKFLSDIELLSEE 219 (268)
T ss_dssp -SSHHHHHHHHHHH--HCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEE--EEEES--HHHHHHHHHHHCCHHHTSS--
T ss_pred CCchHHHHHHHHHH--HHhheeEEEEECCCCchHHHHHHhCcchhcccEE--EeCCcCCHHHHHHHHHHHHHhhcccchh
Confidence 11111111 1234444444444322 221 123566677754 8899999999999999888764334444
Q ss_pred HHHHHHH
Q psy17062 334 AVQLVAR 340 (520)
Q Consensus 334 ~l~~la~ 340 (520)
..+.++.
T Consensus 220 ~~~~l~~ 226 (268)
T PF12780_consen 220 LKKSLAE 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 366
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00016 Score=65.04 Aligned_cols=101 Identities=21% Similarity=0.392 Sum_probs=58.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc---------ccCCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA---------LSIPEPKRAYSRILELLLNVDAPPEQAKAMLE 235 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~---------~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~ 235 (520)
.-++|+|+||+|||++++.+++.|.+. ...++.+.. ..+.-.++.|.+... +...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~---i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------------ks~~ 65 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE---IWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------------KSVE 65 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh---hhhccccchhhhhheecccccchHHHHHHHHHH-------------HHHH
Confidence 358999999999999999999999876 333443333 222222233332211 1111
Q ss_pred HHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 236 RHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 236 ~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
..+..+-+..++|.|+.+....-+.++.+...+. ....+||-+...
T Consensus 66 rlldSalkn~~VIvDdtNYyksmRrqL~ceak~~----~tt~ciIyl~~p 111 (261)
T COG4088 66 RLLDSALKNYLVIVDDTNYYKSMRRQLACEAKER----KTTWCIIYLRTP 111 (261)
T ss_pred HHHHHHhcceEEEEecccHHHHHHHHHHHHHHhc----CCceEEEEEccC
Confidence 1333333477999999998876555555544442 334555554433
No 367
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=1.1e-05 Score=82.98 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++..+..|...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 18 ~dvVGQe~iv~~L~~~i~~---~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS---GKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHhChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4678888877776665553 233445899999999999999999999864
No 368
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.90 E-value=1.3e-05 Score=80.75 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=35.9
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|++.....+..++.. .....+|||||||||||++|+++|+++..
T Consensus 16 ~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS----PNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HhcCCHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456777777776665542 23336999999999999999999999863
No 369
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.89 E-value=6.6e-06 Score=85.13 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=34.0
Q ss_pred CCCChHHHHHH---HHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQS---IHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~---l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|++..+.. +...+ ......++|||||||||||++|++||+.+..
T Consensus 13 d~vGq~~~v~~~~~L~~~i----~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMI----EAGRLSSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred HhcCcHHHhCcchHHHHHH----HcCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45666665544 43333 3445568999999999999999999987653
No 370
>KOG0732|consensus
Probab=97.89 E-value=7.4e-06 Score=90.19 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhcC
Q psy17062 441 APLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD 518 (520)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~~ 518 (520)
..+..++++....+.|... ..+.-++--++..+.++||.|+||+||||||||+.|+|+|..+....++
T Consensus 262 v~fd~vggl~~~i~~LKEm----------Vl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k 329 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEM----------VLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK 329 (1080)
T ss_pred cCccccccHHHHHHHHHHH----------HHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc
Confidence 3445566555555554431 1244445556777889999999999999999999999999988766544
No 371
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=1.7e-05 Score=80.64 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+.. .+.+-.+|||||||||||++|+++|+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4678888877777655542 23455679999999999999999999986
No 372
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.89 E-value=1.5e-05 Score=78.41 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=34.7
Q ss_pred CCCCCChHHHHHHHHHHHHhhhcC--CCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++.|+.++-++.-..+. .+.. -.+.+|||.||||||||+||-+||++|..
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred cccccChHHHHHHHHHHHH-HHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3567788776555443333 2332 24677999999999999999999999864
No 373
>PRK06893 DNA replication initiation factor; Validated
Probab=97.87 E-value=2e-05 Score=74.71 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 490 CMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 490 ~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.++||||||||||+|++|+|+++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999998654
No 374
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.87 E-value=0.00012 Score=73.19 Aligned_cols=146 Identities=13% Similarity=0.164 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH-HHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLK-QEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~-~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
+++.+.|.||.|+||||++..+|.... ......+.+|.+++.......++-. ...+.|-++......+.+...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~--Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT--YADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH--HHHHhCCceEEecCHHHHHHHHHHh
Confidence 478899999999999999888888776 2222267788888887765443322 2333455443333334444444444
Q ss_pred CCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCC-CCchhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 242 HGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTM-DLPERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~-~~~~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
....+|++|=+..-..+. ...|..+++... ...+.++..++.. ..+.. +..+| +.|.+..+-|..+|+.
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~--~i~~~Lvlsat~K~~dlke-i~~~f-~~~~i~~~I~TKlDET 351 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSH--SIEVYLVLSATTKYEDLKE-IIKQF-SLFPIDGLIFTKLDET 351 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccc--cceEEEEEecCcchHHHHH-HHHHh-ccCCcceeEEEccccc
Confidence 567899999887654432 234555555332 2333333333322 22221 22232 4555556777777663
No 375
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=77.66 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=68.0
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH---HHHHhcCCCChHHHHHHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI---LELLLNVDAPPEQAKAMLERH 237 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i---~~~l~g~~~~~~~~~~~l~~~ 237 (520)
...+.+++|+|+-|+|||.|...+.+.+........++ ..+...+ +..+.|+......... ++
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HF-----------h~FM~~vH~~l~~l~g~~dpl~~iA~---~~ 127 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHF-----------HRFMARVHQRLHTLQGQTDPLPPIAD---EL 127 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccH-----------HHHHHHHHHHHHHHcCCCCccHHHHH---HH
Confidence 34668999999999999999999999874332111111 1122222 2333355422222222 12
Q ss_pred HcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 238 FTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 238 ~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
+ +...||+|||++.=+..+.-+|..+|+.+. ..+|++++|+|..
T Consensus 128 ~---~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN~~ 171 (367)
T COG1485 128 A---AETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSNTA 171 (367)
T ss_pred H---hcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCCCC
Confidence 2 356799999998877766667778887664 4488999999974
No 376
>KOG0743|consensus
Probab=97.86 E-value=1.2e-05 Score=80.49 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHh-----hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 470 AEFQSIHRFLLS-----KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 470 ~~~~~l~~~~~~-----~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++++.+|+.. ..+.-=..|-|||||||||||.+.-|+|+.|.
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 345555555443 22233345689999999999999999999874
No 377
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=1.8e-05 Score=83.90 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....|...+. ..+.+..+|||||||||||++|+++|+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~---~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 15 NELVGQNHVSRALSSALE---RGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888887777666555 234566789999999999999999999986
No 378
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.86 E-value=3e-05 Score=72.36 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|.+.+...+..-...++...+..++||||+.|||||.++||+.+++..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 4678888889999988899999999999999999999999999999998875
No 379
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.85 E-value=3.6e-05 Score=64.28 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHHHhhhcC-CC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQ-ST--TGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~-~~--~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.|+.-+.+.+...+...+.. .| |--+-|.||||||||.+++.||+.|-++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 6778888888888888887763 33 3345699999999999999999997664
No 380
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.85 E-value=2.7e-06 Score=85.13 Aligned_cols=146 Identities=20% Similarity=0.178 Sum_probs=78.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC-CChHHHHHHHH-HHHcCCC
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD-APPEQAKAMLE-RHFTRPH 242 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~-~~~~~~~~~l~-~~~~~~~ 242 (520)
-++||.|.||+|||.+.+.+++.. ...+++++..... ..|...- .........+. ..+.. .
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~---------~gLta~~~~d~~~~~~~leaGalvl-a 120 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSA---------AGLTASVSRDPVTGEWVLEAGALVL-A 120 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTC---------CCCCEEECCCGGTSSECEEE-HHHH-C
T ss_pred cceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCccc---------CCccceeccccccceeEEeCCchhc-c
Confidence 489999999999999999887654 3344555443221 0000000 00000000000 00000 4
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcEEEEEEEcCCCCc---------hhhhhhhhhccCCc
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRLIILCIANTMDLP---------ERTLKGKVSSRMGL 303 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v~vI~~tn~~~~~---------~~~l~~~l~sR~~~ 303 (520)
...|++|||+|.+.......|+..|+... ....+..|++++|+.... ...+...+.+||+.
T Consensus 121 d~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDL 200 (331)
T PF00493_consen 121 DGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDL 200 (331)
T ss_dssp TTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SE
T ss_pred cCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCE
Confidence 67899999999999988999999998531 124577899999976411 11246789999987
Q ss_pred ceEEeCCCCHHHHHHHHHHHHhCC
Q psy17062 304 TRLMFKPYDHHQLQEIVQNRLKNN 327 (520)
Q Consensus 304 ~~i~~~~~~~~~~~~Il~~~l~~~ 327 (520)
..+-...++.+.-..+..+.+...
T Consensus 201 if~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 201 IFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EECC--TTT-HHHHHHHHHHHTTT
T ss_pred EEEeccccccccccccceEEEecc
Confidence 544457777766666666666643
No 381
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.84 E-value=1.3e-05 Score=87.59 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|++..+.. ...+...+......++|||||||||||++|++||+.+..
T Consensus 29 d~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 29 EFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred HhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45566665542 112233333445568999999999999999999988754
No 382
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.84 E-value=2.5e-05 Score=73.93 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
...+..++||||||||||++|+++++++.+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999998764
No 383
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.83 E-value=2.7e-05 Score=74.10 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
....++||||||||||+|++++++++.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457999999999999999999998875
No 384
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.83 E-value=2.8e-05 Score=74.63 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.+++||||||||||.||-|||+++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 778999999999999999999999998
No 385
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=2e-05 Score=82.58 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+...+. ..+.+..+|||||||||||++|+++|+.|.-
T Consensus 21 ~dliGq~~vv~~L~~ai~---~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 21 AELQGQEVLVKVLSYTIL---NDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467788887776655444 2345667999999999999999999999864
No 386
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=3.7e-05 Score=77.17 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC--hHH---HHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP--PEQ---AKAMLE 235 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~--~~~---~~~~l~ 235 (520)
-+.+..++|.||+|+|||++++.+++.+.........++.+......+...++..+...++-.... ... ....+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 356778999999999999999999998755411112344444343456667777664433322211 111 111111
Q ss_pred ---HHHcCCCCceEEEEcCCcccccc
Q psy17062 236 ---RHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 236 ---~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
..+...+...||||||++.+...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHHH
Confidence 12223378899999999998764
No 387
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=2.5e-05 Score=80.41 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....|...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 16 ~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677888777766555542 345556999999999999999999999853
No 388
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=2.1e-05 Score=82.76 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....|..++.. .+.+..+|||||||||||++|+++|+.+.-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4577888877777666553 234445699999999999999999999863
No 389
>KOG0740|consensus
Probab=97.81 E-value=1.1e-05 Score=81.39 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+..++||.||||||||+|++|||.|..-
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhhcc
Confidence 457779999999999999999999998653
No 390
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.81 E-value=7.4e-05 Score=69.59 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVM 185 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la 185 (520)
..+..+||||+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 345679999999999999999886
No 391
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00014 Score=66.49 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=58.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCC--CeEEEEEccccCCChHHHHHHHHHHHhcCCC-----------ChHH--
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGD--KFVYVEMNALSIPEPKRAYSRILELLLNVDA-----------PPEQ-- 229 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~-----------~~~~-- 229 (520)
.+.||.|||||||||+++.+++.+...... ...++.++..+- |...+.|.+. ...+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE---------Iag~~~gvpq~~~g~R~dVld~cpk~~ 208 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE---------IAGCLNGVPQHGRGRRMDVLDPCPKAE 208 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch---------hhccccCCchhhhhhhhhhcccchHHH
Confidence 468999999999999999999988664221 344555554331 1122222110 0111
Q ss_pred -HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 230 -AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 230 -~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
....++. ..|-|+++|||...... ..++.++ ++.+.+|++..--
T Consensus 209 gmmmaIrs-----m~PEViIvDEIGt~~d~--~A~~ta~------~~GVkli~TaHG~ 253 (308)
T COG3854 209 GMMMAIRS-----MSPEVIIVDEIGTEEDA--LAILTAL------HAGVKLITTAHGN 253 (308)
T ss_pred HHHHHHHh-----cCCcEEEEeccccHHHH--HHHHHHH------hcCcEEEEeeccc
Confidence 1222222 48999999999876421 2333333 4678888877543
No 392
>PRK08181 transposase; Validated
Probab=97.80 E-value=3.9e-05 Score=74.01 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.+++||||||||||.||.|||+++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 55679999999999999999999988653
No 393
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=2.3e-05 Score=82.72 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=39.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....|...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 16 ~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678888888877766643 345556899999999999999999999863
No 394
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=2.4e-05 Score=81.43 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.|+
T Consensus 13 ~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 4677888777666554442 34566799999999999999999999885
No 395
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=0.00015 Score=63.05 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQ 190 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~ 190 (520)
.++..++|+||+||||+++.+.+|.....
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 45677999999999999999999987644
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=0.00029 Score=72.76 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HHhCCCeEEEEEccccCCChH-HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLK-QEIGDKFVYVEMNALSIPEPK-RAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~-~~~~~~~~~i~v~~~~~~~~~-~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
+..++|.||+|+||||++..++..+. ... +..+..+++....... ..+.. +....+.+.........+...+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~-~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKT-YAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHH-HHHHhCCceEccCCHHhHHHHHHHh
Confidence 45799999999999999999998876 222 3455566654432100 01111 1122232221111112233333333
Q ss_pred CCceEEEEcCCcccccc--ChHHHHHHHH
Q psy17062 242 HGPCVLLIDELDYLCNK--RQDVIYNILE 268 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~--~~~~L~~ll~ 268 (520)
....+||||........ ....|..+++
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 46799999998765432 2234556665
No 397
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.80 E-value=0.00029 Score=72.26 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=72.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCce
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPC 245 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~ 245 (520)
.++|+||.+|||||+++.+.+.+. -..++++.-+........... ...+..... ....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~------~~~iy~~~~d~~~~~~~l~d~--------------~~~~~~~~~--~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL------EEIIYINFDDLRLDRIELLDL--------------LRAYIELKE--REKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC------cceEEEEecchhcchhhHHHH--------------HHHHHHhhc--cCCc
Confidence 799999999999999987777652 225555554443221111111 111122211 1457
Q ss_pred EEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHH
Q psy17062 246 VLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQE 318 (520)
Q Consensus 246 vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~ 318 (520)
.||||||+.+... +..+..+.+... ..+++.+ ++. .+........+..|. ..+.+.|++..+...
T Consensus 97 yifLDEIq~v~~W-~~~lk~l~d~~~---~~v~itg-sss-~ll~~~~~~~L~GR~--~~~~l~PlSF~Efl~ 161 (398)
T COG1373 97 YIFLDEIQNVPDW-ERALKYLYDRGN---LDVLITG-SSS-SLLSKEISESLAGRG--KDLELYPLSFREFLK 161 (398)
T ss_pred eEEEecccCchhH-HHHHHHHHcccc---ceEEEEC-Cch-hhhccchhhhcCCCc--eeEEECCCCHHHHHh
Confidence 9999999998652 334555555221 1444444 333 223223456777885 449999999999865
No 398
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=3.2e-05 Score=78.83 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 467 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+..++.+...+. .+.+|+||||||||||.+|+++|..+..
T Consensus 179 i~e~~le~l~~~L~------~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 179 IPETTIETILKRLT------IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCHHHHHHHHHHHh------cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33445555555554 4678999999999999999999998853
No 399
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=3e-05 Score=79.04 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc------CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS------QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~------~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....|...+..... .+.+..+|||||||||||++|+++|+.|.-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4677888888888777765431 225667999999999999999999998753
No 400
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.79 E-value=3.6e-05 Score=76.47 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+++||||||||||.||.|||+++-++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3789999999999999999999998654
No 401
>PRK08116 hypothetical protein; Validated
Probab=97.78 E-value=4e-05 Score=74.30 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.+++|||+||||||.||.|||++|.+.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34579999999999999999999999764
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.77 E-value=0.00027 Score=69.14 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
+..++|.||+|+||||++..++..+....+ +..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCc
Confidence 457999999999999999999998865411 23444444433
No 403
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.76 E-value=0.00014 Score=73.23 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
.+.|+.+- ....+..|.+.+.-. ...-|+++.||+|||||+++.++........ + ...+...++.
T Consensus 184 G~~P~~~~-~r~k~~~L~rl~~fv---e~~~Nli~lGp~GTGKThla~~l~~~~a~~s--G---------~f~T~a~Lf~ 248 (449)
T TIGR02688 184 GYEPEGFE-ARQKLLLLARLLPLV---EPNYNLIELGPKGTGKSYIYNNLSPYVILIS--G---------GTITVAKLFY 248 (449)
T ss_pred CCCcccCC-hHHHHHHHHhhHHHH---hcCCcEEEECCCCCCHHHHHHHHhHHHHHHc--C---------CcCcHHHHHH
Confidence 45565554 334444444432211 1336799999999999999999887721111 2 2223222222
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHH
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILE 268 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~ 268 (520)
.+.. ..+.......+|+|||+..+.-.....+.++|.
T Consensus 249 ~L~~-----------------~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK 285 (449)
T TIGR02688 249 NIST-----------------RQIGLVGRWDVVAFDEVATLKFAKPKELIGILK 285 (449)
T ss_pred HHHH-----------------HHHhhhccCCEEEEEcCCCCcCCchHHHHHHHH
Confidence 2211 122222578999999999976665544444443
No 404
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.76 E-value=2.5e-05 Score=70.81 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.+++|+||||||||.||-+||+++-+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999998876
No 405
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.75 E-value=3.3e-05 Score=76.82 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.|++.....+...... ...+++||+||||||||++||++|.-|
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~----~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID----PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc----cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3567777776665543221 123679999999999999999999987
No 406
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.75 E-value=0.0001 Score=74.77 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l 188 (520)
.++|.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 407
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=2.5e-05 Score=85.48 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=38.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+.|++..+..|..++.. .+.+..+|||||||||||++|+++|+.|.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4677888888777665542 2445456999999999999999999999753
No 408
>PHA02244 ATPase-like protein
Probab=97.75 E-value=3.2e-05 Score=76.74 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+..|||+||||||||++|++||..++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44569999999999999999999987543
No 409
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00012 Score=67.69 Aligned_cols=127 Identities=24% Similarity=0.289 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-------------------CeEEEEEccccCCChHHHHHHHHHHHhc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-------------------KFVYVEMNALSIPEPKRAYSRILELLLN 222 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-------------------~~~~i~v~~~~~~~~~~~~~~i~~~l~g 222 (520)
..+.++=|.|++||||||+++.++.......+. .+.+|+-+...-.+|......++..-..
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 566788899999999999999999876543321 1223333333333444333333322111
Q ss_pred C---CCChHHHHHHHHH-----------------------HHcCC--CCceEEEEcCCccc-cccChHHHHHHHHhcCCC
Q psy17062 223 V---DAPPEQAKAMLER-----------------------HFTRP--HGPCVLLIDELDYL-CNKRQDVIYNILEYLNKP 273 (520)
Q Consensus 223 ~---~~~~~~~~~~l~~-----------------------~~~~~--~~~~vLiiDEid~l-~~~~~~~L~~ll~~~~~~ 273 (520)
. ......+.+.+.. .+..+ ..|.+||+||.-.. +...|..++++|.... .
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~-~ 189 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK-K 189 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH-H
Confidence 0 0000001111100 11111 68999999999554 4456777777775543 2
Q ss_pred CCcEEEEEEEcCCCCc
Q psy17062 274 KSRLIILCIANTMDLP 289 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~ 289 (520)
..++.+|.++.+....
T Consensus 190 ~~~lt~l~IsHdl~~v 205 (252)
T COG1124 190 ERGLTYLFISHDLALV 205 (252)
T ss_pred hcCceEEEEeCcHHHH
Confidence 4567788888876543
No 410
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.74 E-value=0.00016 Score=72.22 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc-cccCCChHHHHHHHHHHHhcCCC--ChHH------HHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN-ALSIPEPKRAYSRILELLLNVDA--PPEQ------AKA 232 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~-~~~~~~~~~~~~~i~~~l~g~~~--~~~~------~~~ 232 (520)
+.+...+|+|++|||||++++.+++.+..... +..++++- .....+..+++..+...+..... .... ...
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~-dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~ 209 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHP-EVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVL 209 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHH
Confidence 56677899999999999999999998866422 23333322 22344667777777665543221 1111 112
Q ss_pred HHHHHHcCCCCceEEEEcCCcccccc
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
.+-..|...+...|||+||+..+...
T Consensus 210 ~~Ae~f~~~GkdVVLvlDsltr~A~A 235 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLTRLARA 235 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcHHHHHH
Confidence 22334444488999999999988653
No 411
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.74 E-value=7.5e-05 Score=75.90 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHH-HHHHHHHHhcCCCChHH
Q psy17062 151 IHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRA-YSRILELLLNVDAPPEQ 229 (520)
Q Consensus 151 l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~-~~~i~~~l~g~~~~~~~ 229 (520)
+.+.+...+....+.+++|.|+.|||||++++++.+.+... +..++.+ ++.-.....+ -..-+..+++-+.....
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~-a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVT-APTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEe-cchHHHHHhccCCcchHHhcCccccccc
Confidence 33333333344677899999999999999999999988543 2223222 2221110000 00001122221111100
Q ss_pred -------HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC------CCCCcEEEEEEEc
Q psy17062 230 -------AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN------KPKSRLIILCIAN 284 (520)
Q Consensus 230 -------~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------~~~~~v~vI~~tn 284 (520)
....+...+ ....+|||||+-.+.....+.+...|.... ...+++.+|+.+.
T Consensus 85 ~~~~~~~~~~~~~~~l---~~~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 85 KSQCKISKNSRLRERL---RKADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred cccccccccchhhhhh---hhheeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 001111111 466799999999998765555554444322 2345666666443
No 412
>PRK06526 transposase; Provisional
Probab=97.73 E-value=2.4e-05 Score=75.02 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.+++|+||||||||.||.+|+.++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 4568999999999999999999998764
No 413
>KOG2028|consensus
Probab=97.72 E-value=2.2e-05 Score=76.14 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...+.....-.++|+||||||||+||+.||..-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 3344445555679999999999999999999753
No 414
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.71 E-value=6.4e-05 Score=71.44 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+++|+|+||||||.||.+||+++.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999998763
No 415
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=4.2e-05 Score=80.82 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 16 ~diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677888888777665542 234455899999999999999999998863
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=4.7e-05 Score=64.30 Aligned_cols=32 Identities=31% Similarity=0.631 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.++|.|+||+||||+++.+++.+ ++.++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~------~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL------GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH------TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH------CCeEEEecc
Confidence 37899999999999999999998 888877765
No 417
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.70 E-value=0.0004 Score=65.80 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC-----------------
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA----------------- 225 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~----------------- 225 (520)
.+..++|.|++|+|||+++..++..+... +...+++.... ++.+++..+ ..+ |...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~--~~~~~~~~~-~~~-g~~~~~~~~~~~l~~~~~~~~ 95 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQL--TTTEFIKQM-MSL-GYDINKKLISGKLLYIPVYPL 95 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCC--CHHHHHHHH-HHh-CCchHHHhhcCcEEEEEeccc
Confidence 45689999999999999987777665443 55667777443 334444443 221 1100
Q ss_pred --ChHHHHHHHHHHHcCC--CCceEEEEcCCcccccc-----ChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 226 --PPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNK-----RQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 226 --~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~-----~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
........+...+... ..+.+++|||+-.+... ....+.+++...... +..+|.+++.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~--g~tvi~t~~~ 162 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL--NKVIILTANP 162 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 0111122233333322 46889999999876522 123456666544322 2345555553
No 418
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.70 E-value=4.5e-05 Score=76.20 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.+.+++.....+..++.. ...+..+|||||||||||++|+++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 21 DECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4567888777777766652 33455566699999999999999999874
No 419
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=4.7e-05 Score=80.66 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.|.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 16 KQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677888877776655542 34455699999999999999999999985
No 420
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.69 E-value=0.00012 Score=73.33 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC-CChHHHHHHHHHHHhcCCCC--hHHHHH------
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI-PEPKRAYSRILELLLNVDAP--PEQAKA------ 232 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~-~~~~~~~~~i~~~l~g~~~~--~~~~~~------ 232 (520)
+.+.-.+|.||+|+|||+|++.+++.+..... +..++.+...+. .....+...+...++-.... ......
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhF-Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHP-EVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcC-CeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 56677999999999999999999998866421 333333323232 13333433333211111111 111111
Q ss_pred HHHHHHcCCCCceEEEEcCCcccccc
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
...+.+...+...+|||||++.+...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHHH
Confidence 11112223368899999999998764
No 421
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.69 E-value=0.00017 Score=79.85 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=58.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHc---CC
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFT---RP 241 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~---~~ 241 (520)
..++|.|+||||||++++.+...+... +..++.+... ......+..-.|... ..+...+..... ..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApT------g~Aa~~L~~~~g~~a--~Ti~~~~~~~~~~~~~~ 437 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALS------GKAAEGLQAESGIES--RTLASLEYAWANGRDLL 437 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCc------HHHHHHHHhccCCce--eeHHHHHhhhccCcccC
Confidence 578999999999999999999887654 4454433221 111122222223221 111111111111 11
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
....+|||||+-.+... .+..+++......+++++||
T Consensus 438 ~~~~llIvDEasMv~~~---~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSR---QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred CCCcEEEEECcccCCHH---HHHHHHHHHHhcCCEEEEEC
Confidence 46789999999998654 44555553333456777777
No 422
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.69 E-value=5.1e-05 Score=75.81 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.+++..+..+..++.. ....++|||||||||||++|+++++++.
T Consensus 18 ~~~g~~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HhcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 456777777777666542 2334699999999999999999999874
No 423
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=4.1e-05 Score=81.98 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....|...+.. .+.+..+|||||+|||||++|+++|+.|.-
T Consensus 16 ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678888888877776653 355667999999999999999999999863
No 424
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0016 Score=65.32 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC-hHHHHHHHHHHHhcCCC----ChHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE-PKRAYSRILELLLNVDA----PPEQAKAMLERHF 238 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~-~~~~~~~i~~~l~g~~~----~~~~~~~~l~~~~ 238 (520)
+..++|.||+|+||||++..+|..+... +..+..+++....- ...-+... ....|-+. ........+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQLk~y-ae~lgipv~v~~d~~~L~~aL~~l- 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDY-VKTIGFEVIAVRDEAAMTRALTYF- 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHHH-hhhcCCcEEecCCHHHHHHHHHHH-
Confidence 4679999999999999999999988654 44555555543321 11111111 11122221 222222222222
Q ss_pred cCCCCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHH
Q psy17062 239 TRPHGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQ 315 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~ 315 (520)
.......+||||-........ -..|..+++... ...+.++..++.....-......|.. +.+..+-|..+|...
T Consensus 316 k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~--PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~ 391 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETA 391 (436)
T ss_pred HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC--CCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCC
Confidence 111247899999998765432 122444443221 22333333221111000112233332 455567777776643
No 425
>KOG1942|consensus
Probab=97.68 E-value=5.9e-05 Score=71.12 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCCCCChHHHHHHH---HHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 461 VPESLPCREAEFQSI---HRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 461 ~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+..+.|++..-++. .+.+... .-.+..+||.||||||||+||=+|+++|.
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~K--kmaGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSK--KMAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhh--hccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 345666666544332 2333322 23455699999999999999999999875
No 426
>KOG0991|consensus
Probab=97.68 E-value=5.9e-05 Score=68.92 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.|-+..++++.....+. .--+++|.||||||||+.+.+||++|=.
T Consensus 28 dIVGNe~tv~rl~via~~g----nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEG----NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HhhCCHHHHHHHHHHHHcC----CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 5677777777775544422 3346999999999999999999998743
No 427
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00036 Score=66.43 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
..+..++|+|+||+|||+++.+++...... +..++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~ 63 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTEN 63 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCC
Confidence 345779999999999999999998765443 56777777643
No 428
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.66 E-value=0.00011 Score=77.54 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=34.6
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
.+|.++||||+ ..|++..+..|+++++.. -..+.+|.++.+..+
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~---lp~~tvISV~Hr~tl 576 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEE---LPDATVISVGHRPTL 576 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhh---CCCCEEEEeccchhh
Confidence 79999999999 677777888999999832 146778888887653
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.66 E-value=6e-05 Score=73.97 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
.+.+|||.||||||||++|++||..++..+
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 456799999999999999999999987543
No 430
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.66 E-value=0.00024 Score=76.47 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=61.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC----------CChHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD----------APPEQAKAML 234 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~----------~~~~~~~~~l 234 (520)
+..+|+|+|||||||+++.+...+..........|.+-+........+-..+...+.... .....+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 569999999999999999999887553211122344444443322222222211111000 0111222222
Q ss_pred HHH-----HcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 235 ERH-----FTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 235 ~~~-----~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
... |... -...+|||||+-.+.. ..+..+++... ..+++++||-.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll~al~-~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLIDALP-PHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHHHhcc-cCCEEEEecch
Confidence 111 1110 2346999999988853 56666776543 45778887733
No 431
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.65 E-value=6.5e-05 Score=76.31 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+.. .+.+..+|||||||+|||++|+++|+.+..
T Consensus 14 ~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677888888877766642 344556899999999999999999999863
No 432
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.65 E-value=0.0014 Score=61.81 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=75.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH-------HHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA-------KAMLERH 237 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~-------~~~l~~~ 237 (520)
-.++|.|++|+|||+++..++..+... +..|++-+.... ...+.-|+............. ...+.+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~----f~~I~l~t~~~n--~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK----FDHIFLITPEYN--NEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY 87 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc----CCEEEEEecCCc--hhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999887543 233333333222 112222221111111111111 1222223
Q ss_pred HcCC-----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCC
Q psy17062 238 FTRP-----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYD 312 (520)
Q Consensus 238 ~~~~-----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~ 312 (520)
.... ....+||||++..- ......+.+++... .+.++.+|.++..--. +++.++.-+.. .+-++ .+
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~g--RH~~is~i~l~Q~~~~----lp~~iR~n~~y-~i~~~-~s 158 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNG--RHYNISIIFLSQSYFH----LPPNIRSNIDY-FIIFN-NS 158 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcc--cccceEEEEEeeeccc----CCHHHhhcceE-EEEec-Cc
Confidence 2211 34789999998541 23456677777633 3556777776665432 33344333332 24454 57
Q ss_pred HHHHHHHHHHHH
Q psy17062 313 HHQLQEIVQNRL 324 (520)
Q Consensus 313 ~~~~~~Il~~~l 324 (520)
..++..|++...
T Consensus 159 ~~dl~~i~~~~~ 170 (241)
T PF04665_consen 159 KRDLENIYRNMN 170 (241)
T ss_pred HHHHHHHHHhcc
Confidence 777766655443
No 433
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=97.65 E-value=0.0024 Score=63.92 Aligned_cols=213 Identities=13% Similarity=0.166 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHhhc---------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 145 EAEFQSIHRFLLSKISQ---------------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~~---------------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++.|.+|+...... .-+..+++.|..=..=..+...+...+.... +..++.++..++.+-
T Consensus 55 ~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~~--~~~vv~L~S~dc~~l 132 (330)
T PF07034_consen 55 SKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSSV--GPYVVRLNSKDCSNL 132 (330)
T ss_pred HHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhCC--CcEEEEEecccchHH
Confidence 45677788888875432 2345688889998888899999999987653 567888999999999
Q ss_pred HHHHHHHHHHHhcCCCChHH--------------HHHHHHHHHc-------------CC------CCceEEEEcCCcccc
Q psy17062 210 KRAYSRILELLLNVDAPPEQ--------------AKAMLERHFT-------------RP------HGPCVLLIDELDYLC 256 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~--------------~~~~l~~~~~-------------~~------~~~~vLiiDEid~l~ 256 (520)
+.++..|+.++.+....... ....+...+. .. ..+.||+|+|++.+.
T Consensus 133 k~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~ 212 (330)
T PF07034_consen 133 KSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFD 212 (330)
T ss_pred HHHHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCC
Confidence 99999999999754322211 2233333443 11 358999999999998
Q ss_pred ccChHHHHHHHHhcCCCCCcE-EEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCH
Q psy17062 257 NKRQDVIYNILEYLNKPKSRL-IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHP 332 (520)
Q Consensus 257 ~~~~~~L~~ll~~~~~~~~~v-~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~ 332 (520)
....+-|..++..+. ..-++ .|+|++...+.....+.....+++....+.+++ ....+.+|++..+-.. ..+++
T Consensus 213 ~~VL~dlI~ils~~~-~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~~~F~~~~-~~~~l~~v~~~~l~~~~~~~~l~~ 290 (330)
T PF07034_consen 213 SQVLQDLILILSSYL-DRLPFVLIFGIATSVEAFHSRLPRSTLSLLRIKKFQLQS-SSEILERVLEKVLLSPDFPFKLGP 290 (330)
T ss_pred HHHHHHHHHHHHhcc-CCcCEEEEEecCCChHHHHhhCCHHHHhhcCceEEEeCC-hHHHHHHHHHHHhcCCCCCceECH
Confidence 765555555554332 23344 445666666666666777888888776555554 4555666666654332 56788
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 333 DAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 333 ~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
..++.|..........+...+..++.+..
T Consensus 291 ~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m 319 (330)
T PF07034_consen 291 RVLQFLLDRFLDHDFSVDSFISGLKYAYM 319 (330)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 89999988877777777777777766643
No 434
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.64 E-value=7.7e-05 Score=77.79 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.++.|.++.++.+..++..+.. .....-++|.||||+|||.||+.||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3567899999999998865544 334445899999999999999999998764
No 435
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.64 E-value=7.2e-05 Score=78.75 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhcCCC-CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 469 EAEFQSIHRFLLSKISQST-TGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~~-~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+-++++...+...+.... ..-+||+||||||||++++.||+++.=+
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3446777777777665444 3446889999999999999999998543
No 436
>PRK06921 hypothetical protein; Provisional
Probab=97.64 E-value=4.4e-05 Score=73.84 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
...+++||||||||||.||.|||+++.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46789999999999999999999998765
No 437
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.64 E-value=0.00025 Score=71.74 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC-----hHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP-----PEQAKAMLERH 237 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~-----~~~~~~~l~~~ 237 (520)
++..++|+|+||+|||+++..++..+... +..++|++..+. ..++... ...+ |.... .....+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs--~~qi~~R-a~rl-g~~~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEES--PEQIKLR-ADRL-GISTENLYLLAETNLEDILAS 153 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcC--HHHHHHH-HHHc-CCCcccEEEEccCcHHHHHHH
Confidence 45679999999999999999999888654 457788876542 2222111 1222 21100 00011222222
Q ss_pred HcCCCCceEEEEcCCccccc
Q psy17062 238 FTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 238 ~~~~~~~~vLiiDEid~l~~ 257 (520)
+. ...+.+||||+++.+..
T Consensus 154 i~-~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 154 IE-ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HH-hcCCcEEEEcchHHhhc
Confidence 22 14789999999998864
No 438
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.64 E-value=0.00034 Score=78.77 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC----
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR---- 240 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~---- 240 (520)
..++|.|.+||||||+++.+.+.+... +..++-+... ......+..-.|.. . .....+...+..
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApT------GkAA~~L~e~tGi~--a-~TI~sll~~~~~~~~~ 430 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALS------GIAAENLEGGSGIA--S-RTIASLEHGWGQGRDL 430 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCc------HHHHHHHhhccCcc--h-hhHHHHHhhhcccccc
Confidence 357899999999999999887766543 4444433221 11111122212221 1 122222211111
Q ss_pred CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 241 PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 241 ~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
.....||||||+-.+... .+..+|.......+++++||=.
T Consensus 431 l~~~~vlIVDEASMv~~~---~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 431 LTSRDVLVIDEAGMVGTR---QLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred cccCcEEEEECcccCCHH---HHHHHHHhhhhCCCEEEEECCH
Confidence 146679999999988654 4555665443456778887733
No 439
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.64 E-value=0.00059 Score=65.16 Aligned_cols=189 Identities=15% Similarity=0.057 Sum_probs=109.9
Q ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC-ChHH
Q psy17062 151 IHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA-PPEQ 229 (520)
Q Consensus 151 l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~-~~~~ 229 (520)
+..++..+ ...+....+||.+|.|||+.++.++.. ....+.+......+...+...++....+... ....
T Consensus 83 ~~~~~~~A--~k~g~l~~vyg~~g~gKt~a~~~y~~s-------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d 153 (297)
T COG2842 83 IFFRTRPA--SKTGSLVVVYGYAGLGKTQAAKNYAPS-------NPNALLIEADPSYTALVLILIICAAAFGATDGTIND 153 (297)
T ss_pred Hhhhhhhh--hhcCceEEEeccccchhHHHHHhhccc-------CccceeecCChhhHHHHHHHHHHHHHhcccchhHHH
Confidence 34444443 234447889999999999999999985 3444555555555555555555555444321 1222
Q ss_pred HHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC--CCchh--hhhhhhhccCCcce
Q psy17062 230 AKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM--DLPER--TLKGKVSSRMGLTR 305 (520)
Q Consensus 230 ~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~--~~~~~--~l~~~l~sR~~~~~ 305 (520)
....+...+ ...+.+|++||.+.|.....+.|..+.+ ..++.++.+.++. ....+ ....++.+|..+..
T Consensus 154 ~~~~~~~~l--~~~~~~iivDEA~~L~~~ale~lr~i~d-----~~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv~v~~ 226 (297)
T COG2842 154 LTERLMIRL--RDTVRLIIVDEADRLPYRALEELRRIHD-----KTGIGVVLVGMPRLFKVLRRPEDELSRLYSRVRVGK 226 (297)
T ss_pred HHHHHHHHH--ccCcceeeeehhhccChHHHHHHHHHHH-----hhCceEEEecChHHHhccccchHHHHHHHHHhhhHh
Confidence 222222222 2678899999999999887777877777 3345555544543 11111 11234555554331
Q ss_pred E-EeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 306 L-MFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 306 i-~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+ ...-++.++..++....+.. ..+..+..+... ..|+++..-.++..+..
T Consensus 227 ~~~~~~~d~d~~~~~~~~~l~~---~~~~~v~~~~~~---~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 227 LLGEKFPDADELAEIAALVLPT---EDELVLMQVIKE---TEGNIRRLDKILAGAVG 277 (297)
T ss_pred hhhhhhhhhHHHHHHHHhhCcc---chHHHHHHHHHh---cchhHhHHHHHHhhhhh
Confidence 2 22333446666666666543 456666666555 67788877777766654
No 440
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=5.3e-05 Score=80.79 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.+.|++.....|..++.. .+.+-.+|||||+|||||++|+++|+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA---GRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677888877777666652 23444579999999999999999999987
No 441
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0037 Score=63.54 Aligned_cols=145 Identities=11% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH-HHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK-RAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~-~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
+..++|.||+|+||||++..++..+.... +..+..+++....... ..+.. .....|.+.........+...+.. .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~eQLk~-yAe~lgvp~~~~~~~~~l~~~l~~-~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIEQLKR-YADTMGMPFYPVKDIKKFKETLAR-D 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHHHHHH-HHHhcCCCeeehHHHHHHHHHHHh-C
Confidence 34688999999999999999998653222 4445555554433211 11111 112223222111112223333322 4
Q ss_pred CceEEEEcCCcccccc--ChHHHHHHHHhcCC-CCCcEEEEEEEc-CCCCchhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 243 GPCVLLIDELDYLCNK--RQDVIYNILEYLNK-PKSRLIILCIAN-TMDLPERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~-~~~~v~vI~~tn-~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
...+||||=....... .-+.|..+++.... ....+.++..++ ..+.... ....+ +.+.+..+.|..+|..
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~-~~~~f-~~~~~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT-VLKAY-ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH-HHHHh-cCCCCCEEEEEcccCC
Confidence 6789999976554322 22334444443211 122333443222 2211211 12222 5566667778777764
No 442
>KOG0482|consensus
Probab=97.62 E-value=0.00023 Score=71.91 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=111.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQST--------TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKR 211 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~--------~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~ 211 (520)
.++|++..-+.|.-.|-......+ .-+++|.|.||+-|+.|++++.+.. ..-+|..+..... -.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla-------pRgvYTTGrGSSG-VG 414 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA-------PRGVYTTGRGSSG-VG 414 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC-------cccceecCCCCCc-cc
Confidence 467777766666555544322222 1379999999999999999999864 2223333221110 00
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHH-HHcCCCCceEEEEcCCccccccChHHHHHHHHhcC----------CCCCcEEEE
Q psy17062 212 AYSRILELLLNVDAPPEQAKAMLER-HFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN----------KPKSRLIIL 280 (520)
Q Consensus 212 ~~~~i~~~l~g~~~~~~~~~~~l~~-~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~----------~~~~~v~vI 280 (520)
+ .......+++.. -.|+. .+. .....|..|||+|.+...+...+..+++... ..+.+..|+
T Consensus 415 L----TAAVmkDpvTgE---M~LEGGALV-LAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 415 L----TAAVMKDPVTGE---MVLEGGALV-LADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred c----chhhhcCCCCCe---eEeccceEE-EccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 0 000000000000 00000 000 0467799999999999999889998887532 234567788
Q ss_pred EEEcCCCC-------c--hhhhhhhhhccCCcce-----------------------------EEeCCCCHHHHHHHHHH
Q psy17062 281 CIANTMDL-------P--ERTLKGKVSSRMGLTR-----------------------------LMFKPYDHHQLQEIVQN 322 (520)
Q Consensus 281 ~~tn~~~~-------~--~~~l~~~l~sR~~~~~-----------------------------i~~~~~~~~~~~~Il~~ 322 (520)
+++|+..- + +-.|+.++.|||++-. ..|.|++.+-++.+|..
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ 566 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL 566 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH
Confidence 88886321 1 1124567788876432 33444445555554443
Q ss_pred HHhCCCCCCHHHHHHHHHHcCC-----------CCCCHHHHHHHHHhhhc
Q psy17062 323 RLKNNNCFHPDAVQLVARLEPP-----------TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 323 ~l~~~~~~~~~~l~~la~~~~~-----------~~G~~r~al~~l~~a~~ 361 (520)
.-+..+.++++.-++|...+.. ..-.+|..+.+++....
T Consensus 567 ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~A 616 (721)
T KOG0482|consen 567 AKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTA 616 (721)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH
Confidence 3333356666666665543211 12247777777776654
No 443
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=6e-05 Score=80.04 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 16 ~divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577888877766655552 344556799999999999999999999853
No 444
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.62 E-value=0.00027 Score=66.02 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.+..++|+|+||+|||+++..++...... +..++++++..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 45678999999999999999999887654 66788888865
No 445
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.60 E-value=0.00017 Score=66.25 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
..+.+.||+|||||.+|-+.+-++...
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 579999999999999999999777655
No 446
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=8.1e-05 Score=75.98 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+...+.. .+.+..+|||||||+|||++|+++|+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567887777766665543 345668999999999999999999999864
No 447
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=7.6e-05 Score=80.26 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....|..++.. .+.+..+|||||+|||||++|+++|+.|.-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHHcCcHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678888888777666552 344556799999999999999999999863
No 448
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0012 Score=68.90 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIG-DKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~-~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.+..+.|+||+|+||||++..++..+..... ..+.++..+....... ..+... ....|..+........+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~-EQLk~y-a~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGR-EQLHSY-GRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHH-HHHHHh-hcccCceeEecCcHHHHHHHHHHh
Confidence 4578999999999999999999987755421 1233444433222211 111111 111122111111112233344333
Q ss_pred CCceEEEEcCCccccc
Q psy17062 242 HGPCVLLIDELDYLCN 257 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~ 257 (520)
....+||||.......
T Consensus 427 ~~~DLVLIDTaG~s~~ 442 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR 442 (559)
T ss_pred ccCCEEEecCCCcchh
Confidence 5688999999987643
No 449
>KOG0477|consensus
Probab=97.60 E-value=9.6e-05 Score=76.32 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCC--------CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTT--------GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKR 211 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~--------~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~ 211 (520)
+++|++..-..+.-.|........+ -++||.|.|||||+..++.+++.. ...|...+....+
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s-------~RAV~tTGqGASa--- 519 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS-------PRAVFTTGQGASA--- 519 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC-------cceeEeccCCccc---
Confidence 4677776666666666553322211 379999999999999999999864 2222222211100
Q ss_pred HHHHHHHHHhcCCCC----hHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC----------CCCcE
Q psy17062 212 AYSRILELLLNVDAP----PEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK----------PKSRL 277 (520)
Q Consensus 212 ~~~~i~~~l~g~~~~----~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~----------~~~~v 277 (520)
.|.... +..-+..|+....-.....|.+|||+|.|...+...+...|+.... ...++
T Consensus 520 ---------vGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArc 590 (854)
T KOG0477|consen 520 ---------VGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARC 590 (854)
T ss_pred ---------cceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhh
Confidence 010000 0000111111100004677999999999999888888888875431 24567
Q ss_pred EEEEEEcCCCCch-----h----hhhhhhhccCCcc
Q psy17062 278 IILCIANTMDLPE-----R----TLKGKVSSRMGLT 304 (520)
Q Consensus 278 ~vI~~tn~~~~~~-----~----~l~~~l~sR~~~~ 304 (520)
.+|+++|+..-.. + .+..++.|||.+-
T Consensus 591 tvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 591 TVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDIL 626 (854)
T ss_pred hhheecCCCCCccCCccchhhccccccchhhhccee
Confidence 8999999843211 0 2456788999763
No 450
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=4.5e-05 Score=77.22 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMR 510 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~ 510 (520)
++.|++.....+...-. .+-++|||||||||||++|+-+..
T Consensus 180 DV~GQ~~AKrAleiAAA------GgHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 180 DVKGQEQAKRALEIAAA------GGHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred hhcCcHHHHHHHHHHHh------cCCcEEEecCCCCchHHhhhhhcc
Confidence 56677665555544433 667899999999999999987654
No 451
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=8.9e-05 Score=79.61 Aligned_cols=54 Identities=17% Similarity=0.438 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcC-CCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
+.+.++++.+..+..++...... .++..++|+||||||||+++++||.++..++
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 46778888888887777654433 3444499999999999999999999987654
No 452
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=7.8e-05 Score=80.10 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....|...+. ..+-+..+||+||||||||++|+++|+.|.-
T Consensus 16 ~eivGQe~i~~~L~~~i~---~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 16 ADITAQEHITHTIQNSLR---MDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467788887776655443 2355566999999999999999999999853
No 453
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=8.3e-05 Score=77.48 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.+.-
T Consensus 17 ~diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5678888877766655542 344566899999999999999999999853
No 454
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=4.2e-05 Score=73.05 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++|||.||+|||||+||+.||+.|+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 457899999999999999999999875
No 455
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.59 E-value=0.00012 Score=69.33 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.....++||||||||||.||+++++++.+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45567999999999999999999998743
No 456
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.58 E-value=0.00032 Score=63.04 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=61.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHH--HHHHHHHcC-CC
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAK--AMLERHFTR-PH 242 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~--~~l~~~~~~-~~ 242 (520)
.++|+|+||+|||+++..++..+ +.+++++......+ .+...+|-.........+...+ ..+...+.. ..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~------~~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS------GLQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc------CCCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 58999999999999999999876 55667777655433 2333343222221111111111 123333333 24
Q ss_pred CceEEEEcCCcccccc----C-----hHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 243 GPCVLLIDELDYLCNK----R-----QDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~----~-----~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
.+.+++||-+..+... . ...+..+++++......+ |.++|..
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tv--VlVs~Ev 126 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKI--ILVTNEV 126 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCE--EEEEcCC
Confidence 5668999998777431 1 123445666554333344 4445543
No 457
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.58 E-value=0.00046 Score=60.76 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE---EccccCCChHHHHHHHHHHH----hcCC-----CChHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE---MNALSIPEPKRAYSRILELL----LNVD-----APPEQAKA 232 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~---v~~~~~~~~~~~~~~i~~~l----~g~~-----~~~~~~~~ 232 (520)
+-+.||+++|.|||++|-.++-..... +..+.. +.+........++..+- .+ .|.. ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~---g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH---GYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 468899999999999999999888766 455544 33322233444433320 00 0110 01111111
Q ss_pred HHHHHHcC------CCCceEEEEcCCcccccc---ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 233 MLERHFTR------PHGPCVLLIDELDYLCNK---RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 233 ~l~~~~~~------~~~~~vLiiDEid~l~~~---~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
.....+.. .....+|||||+-..... ..+.+..+++. ....+-+|.|++..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCC
Confidence 11222221 267899999999887554 45667777763 34566777777653
No 458
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=8.1e-05 Score=79.83 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....|...+. ..+.+..+|||||+|||||++|+++|+.|.-
T Consensus 24 ~dliGq~~~v~~L~~~~~---~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFE---TGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 468889888877776665 2455667999999999999999999999863
No 459
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.57 E-value=0.00059 Score=67.30 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH---HHHHh-cCCCChHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI---LELLL-NVDAPPEQAKAMLERHF 238 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i---~~~l~-g~~~~~~~~~~~l~~~~ 238 (520)
.+..++|+||||+|||+|+..++...... +..++++++....++. ....+ +..+. -+.....+....+...+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~-~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV-YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 44678899999999999999988887655 5677888887654442 11111 01111 11122233333333332
Q ss_pred cCCCCceEEEEcCCccccc
Q psy17062 239 TRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~ 257 (520)
....+.+||||-+..+.+
T Consensus 130 -~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 130 -RSGAVDIIVVDSVAALVP 147 (321)
T ss_pred -hccCCcEEEEcchhhhcc
Confidence 225788999999998864
No 460
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=8.6e-05 Score=79.76 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+.|++..+..|...+.. .+.+..+|||||+|||||++|+++|+.|.-+
T Consensus 16 ~divGQe~vv~~L~~~l~~---~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL---GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4678898888877666653 2344557999999999999999999999764
No 461
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=8e-05 Score=79.02 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++|++.....|...+.. .+.+..+|||||+|||||++|+++|+.|.-
T Consensus 16 ddVIGQe~vv~~L~~al~~---gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ---QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678888878777666652 344556799999999999999999999963
No 462
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.57 E-value=0.00026 Score=65.21 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA----PPEQAKAMLERHFT 239 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~----~~~~~~~~l~~~~~ 239 (520)
|..++|.||+|+||||++-.+|..+... ...+.++..+...... .+-+..+.+.+ |-++ ......+.+...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga-~eQL~~~a~~l-~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGA-VEQLKTYAEIL-GVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHH-HHHHHHHHHHH-TEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccH-HHHHHHHHHHh-ccccchhhcchhhHHHHHHHHH
Confidence 3568999999999999999999998776 3355556555544322 22222223332 3221 00011122222222
Q ss_pred CC--CCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 240 RP--HGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 240 ~~--~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
.. ....+||||-........ ...|..+++... ...+.++..++... ........+...+.+..+-|..+|+.
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--~~~~~LVlsa~~~~-~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--PDEVHLVLSATMGQ-EDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--SSEEEEEEEGGGGG-HHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--CccceEEEecccCh-HHHHHHHHHhhcccCceEEEEeecCC
Confidence 21 356899999987665432 234555555442 44555555444321 11111234445555555777777763
No 463
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=8.3e-05 Score=79.65 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.+.|++.....|..++.. .+.+-.+|||||+|||||++|+++|+.|.
T Consensus 16 ~dviGQe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577888877777665553 34455579999999999999999999986
No 464
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.56 E-value=7e-05 Score=75.17 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.+++.........+. .++.+||-||||||||++|+++|..+..+
T Consensus 26 ~~g~~~~~~~~l~a~~------~~~~vll~G~PG~gKT~la~~lA~~l~~~ 70 (329)
T COG0714 26 VVGDEEVIELALLALL------AGGHVLLEGPPGVGKTLLARALARALGLP 70 (329)
T ss_pred eeccHHHHHHHHHHHH------cCCCEEEECCCCccHHHHHHHHHHHhCCC
Confidence 5566666666655555 66789999999999999999999998743
No 465
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.56 E-value=0.00052 Score=64.86 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
.+..++|+|+||+|||+++..++..+... +..++++++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 45678999999999999999999887654 6678888876
No 466
>KOG3347|consensus
Probab=97.56 E-value=8.4e-05 Score=63.16 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
.+++||+|.|||||||++..+|... ++.+| +++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~------~~~~i--~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT------GLEYI--EISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh------CCceE--ehhhHH
Confidence 4679999999999999999999876 66554 444443
No 467
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.55 E-value=0.00065 Score=60.53 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
..|.+|+=||. .+|++.-...+.++|+... .....|+.+|.+.+
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~ 198 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLE 198 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHH
Confidence 68999999999 7888776677888887664 44555666676654
No 468
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.54 E-value=0.00017 Score=74.64 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..++||||||||||+|++|+++++.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 468999999999999999999999875
No 469
>KOG0062|consensus
Probab=97.54 E-value=0.00062 Score=69.36 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=24.6
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
....-.+|...|+.|.||+++.|.+..++.
T Consensus 386 d~e~~sRi~~vg~ng~gkst~lKi~~~~l~ 415 (582)
T KOG0062|consen 386 DRESDSRISRVGENGDGKSTLLKILKGDLT 415 (582)
T ss_pred ccchhhhhheeccCchhHHHHHHHHhccCC
Confidence 344566788999999999999999887664
No 470
>PRK06620 hypothetical protein; Validated
Probab=97.54 E-value=5.6e-05 Score=70.69 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..++||||||||||+|++++++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 569999999999999999988764
No 471
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0001 Score=78.86 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.....+...+.. .+.+-.+|||||+|||||++|+.+|+.+.-
T Consensus 16 ~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5678888877766655553 334445899999999999999999999863
No 472
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00012 Score=79.19 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+...+.. .+.+-.+|||||+|||||++|+++|+.|.-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4577887777766655542 244555799999999999999999999864
No 473
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0096 Score=60.00 Aligned_cols=215 Identities=13% Similarity=0.149 Sum_probs=119.9
Q ss_pred HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCe
Q psy17062 126 QLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKF 196 (520)
Q Consensus 126 ~~~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~ 196 (520)
...++..-...++..+-..+.-+.-+++-|-..+. ..++..+++.|--|+||||++-.+|..+... +.
T Consensus 53 ~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~---~~ 129 (451)
T COG0541 53 KRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK---GK 129 (451)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc---CC
Confidence 34455444455666666666666555555554433 2356779999999999999999999999884 55
Q ss_pred EEEEEccccCC-ChHHHHHHHHHHHh----cC--CCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------
Q psy17062 197 VYVEMNALSIP-EPKRAYSRILELLL----NV--DAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-------- 259 (520)
Q Consensus 197 ~~i~v~~~~~~-~~~~~~~~i~~~l~----g~--~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-------- 259 (520)
.+.-+.|..+. ...+-+..+..++. +. ..++.. .....+..+ ....|+|+|=+..+.-+.
T Consensus 130 kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~---Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~ 206 (451)
T COG0541 130 KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE---IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKE 206 (451)
T ss_pred ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH---HHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHH
Confidence 55555554332 12223333333331 11 112222 223333333 356899999887665431
Q ss_pred -------------------hHH--HHHHHHh-c-----------------------CCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 260 -------------------QDV--IYNILEY-L-----------------------NKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 260 -------------------~~~--L~~ll~~-~-----------------------~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
|+. ....|+. . .....++.+||++...+.++.+-+
T Consensus 207 Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P 286 (451)
T COG0541 207 IKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHP 286 (451)
T ss_pred HHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcCh
Confidence 111 1111110 0 023568999999999988887778
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
.++.+|+ +.--++..+++..-+ .++.+..+.+++.+..-.-++...++-++.
T Consensus 287 ~R~asRI---------LGMGDv~sLvEk~~~---~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~ 338 (451)
T COG0541 287 DRFASRI---------LGMGDVLSLIEKAEE---VVDEEEAEKLAEKLKKGKFTLEDFLEQLEQ 338 (451)
T ss_pred HHHHHHh---------cCcccHHHHHHHHHH---hhhHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8899986 344455555554443 234444445554443333455554444443
No 474
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.53 E-value=0.0041 Score=63.77 Aligned_cols=148 Identities=9% Similarity=0.138 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH--HHHHhcCCCC----hHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI--LELLLNVDAP----PEQAKAMLER 236 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i--~~~l~g~~~~----~~~~~~~l~~ 236 (520)
.+..++|+|++|+||||++..+|..+... +..+..++|..+.. ..+.++ +....+-++. ..........
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~--aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~ 173 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRA--GAFDQLKQNATKARIPFYGSYTESDPVKIASE 173 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccch--hHHHHHHHHhhccCCeEEeecCCCCHHHHHHH
Confidence 35679999999999999999999988654 55566666654432 222221 1111121110 0011111111
Q ss_pred HHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCC-CCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCH
Q psy17062 237 HFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNK-PKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDH 313 (520)
Q Consensus 237 ~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~-~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~ 313 (520)
.+..+ ....+||||=...+... ...+..+...... ....+.+|.-+.. ..........|...+.+.-+.|..+|.
T Consensus 174 ~l~~~~~~~~DvViIDTaGr~~~d-~~lm~El~~i~~~~~p~e~lLVlda~~-Gq~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSGRHKQE-DSLFEEMLQVAEAIQPDNIIFVMDGSI-GQAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred HHHHHHhCCCCEEEEECCCCCcch-HHHHHHHHHHhhhcCCcEEEEEecccc-ChhHHHHHHHHHhccCCcEEEEECccC
Confidence 22211 36789999999876432 2233332222111 1223444442221 111111235565555566677888877
Q ss_pred HHHH
Q psy17062 314 HQLQ 317 (520)
Q Consensus 314 ~~~~ 317 (520)
..+.
T Consensus 252 ~arg 255 (429)
T TIGR01425 252 HAKG 255 (429)
T ss_pred CCCc
Confidence 5444
No 475
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.53 E-value=0.0013 Score=59.30 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
.+++.|+||+|||+++..++..+... +..++.+++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~---g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK---GKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEEcCCC
Confidence 47899999999999999999988765 566777776554
No 476
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.00016 Score=75.18 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
..++||||||||||+|++|+|+++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~ 158 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhC
Confidence 3599999999999999999999987653
No 477
>KOG3928|consensus
Probab=97.52 E-value=0.01 Score=59.05 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=33.8
Q ss_pred ceEEeCCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 304 TRLMFKPYDHHQLQEIVQNRLKNN----NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 304 ~~i~~~~~~~~~~~~Il~~~l~~~----~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
..|++++|+.+|..+++..+++.. ....++.++.+.-+ ..|++...-.+
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fL---SngNP~l~~~l 456 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFL---SNGNPSLMERL 456 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhh---cCCCHHHHHHH
Confidence 349999999999999999999864 22234455555544 67887544333
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.52 E-value=0.0016 Score=62.16 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
++..++|.|+||+|||+++..++..+.... +.+++++++.. ++..+..++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCC--CHHHHHHHHHH
Confidence 455789999999999999999988776543 44566666543 33444444433
No 479
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.51 E-value=0.00058 Score=61.26 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----C-eEEEEEccccCCChHHHHHHHHHHHhcCCCChHHH--HHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----K-FVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQA--KAML 234 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~-~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~--~~~l 234 (520)
.++..+.|.|++|+||||+++.++..+....+. + ..+.++..........+...+... .....+..+. ....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~~~LS~G~~~rv~la 103 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-CCCCCCHHHHHHHHHH
Confidence 456789999999999999999999876543221 0 111222211111111222222110 1112222111 1111
Q ss_pred HHHHcCCCCceEEEEcCCc-cccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 235 ERHFTRPHGPCVLLIDELD-YLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 235 ~~~~~~~~~~~vLiiDEid-~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
+.++ ..|.+|++||.- .|+......+.+++... ...+|.++++.+
T Consensus 104 ral~---~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLL---HKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPS 149 (166)
T ss_pred HHHH---cCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChh
Confidence 1111 689999999995 55566677787887743 245666676643
No 480
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.51 E-value=0.00045 Score=59.14 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
+++|+|++|+|||+++..++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 58999999999999999999888654
No 481
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.50 E-value=0.00039 Score=76.75 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=58.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHH-------
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERH------- 237 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~------- 237 (520)
+.++|+|+||||||++++++++.+..... ... +.+-+...... .. +....|... ..+...+...
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~-v~l~ApTg~AA----~~-L~e~~g~~a--~Tih~lL~~~~~~~~~~ 409 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLP-VGLAAPTGRAA----KR-LGEVTGLTA--STIHRLLGYGPDTFRHN 409 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-Cce-EEEEeCchHHH----HH-HHHhcCCcc--ccHHHHhhccCCccchh
Confidence 57999999999999999999998865421 022 33322221111 11 222223211 1111111110
Q ss_pred -HcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 238 -FTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 238 -~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
........+|||||+..+.. ..+..++.... ...+++++|-.+
T Consensus 410 ~~~~~~~~~llIvDEaSMvd~---~~~~~Ll~~~~-~~~rlilvGD~~ 453 (720)
T TIGR01448 410 HLEDPIDCDLLIVDESSMMDT---WLALSLLAALP-DHARLLLVGDTD 453 (720)
T ss_pred hhhccccCCEEEEeccccCCH---HHHHHHHHhCC-CCCEEEEECccc
Confidence 01113567999999999965 45566665443 456777777333
No 482
>PLN02674 adenylate kinase
Probab=97.50 E-value=0.0014 Score=62.06 Aligned_cols=83 Identities=10% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC-------hH-HHHHHHHHHHhcCCCChHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE-------PK-RAYSRILELLLNVDAPPEQAKAM 233 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~-------~~-~~~~~i~~~l~g~~~~~~~~~~~ 233 (520)
.....++|.||||+||+|.++.+++.+ ++ .++++.++.- +. ..+..++. .|..++..-....
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~------~~--~his~GdllR~~i~~~s~~g~~i~~~~~--~G~lvpd~iv~~l 98 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY------CL--CHLATGDMLRAAVAAKTPLGIKAKEAMD--KGELVSDDLVVGI 98 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc------CC--cEEchhHHHHHHHhccChhhHHHHHHHH--cCCccCHHHHHHH
Confidence 345679999999999999999999976 54 4555544311 00 11111111 2554454445555
Q ss_pred HHHHHcCCCCceEEEEcCCcc
Q psy17062 234 LERHFTRPHGPCVLLIDELDY 254 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~ 254 (520)
+...+.......-+|||-+..
T Consensus 99 v~~~l~~~~~~~g~ilDGfPR 119 (244)
T PLN02674 99 IDEAMKKPSCQKGFILDGFPR 119 (244)
T ss_pred HHHHHhCcCcCCcEEEeCCCC
Confidence 555554432224588888765
No 483
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.50 E-value=0.00045 Score=71.94 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA-----PPEQAKAMLERH 237 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~-----~~~~~~~~l~~~ 237 (520)
.+..++|+|+||+|||+++..++..+... +..++|++..+. ..++... ...+ |... ......+.+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees--~~qi~~r-a~rl-g~~~~~l~~~~e~~l~~i~~~ 151 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEES--ASQIKLR-AERL-GLPSDNLYLLAETNLEAILAT 151 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcccc--HHHHHHH-HHHc-CCChhcEEEeCCCCHHHHHHH
Confidence 34578999999999999999999987643 567788876543 2222211 1222 2110 000011222222
Q ss_pred HcCCCCceEEEEcCCccccc
Q psy17062 238 FTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 238 ~~~~~~~~vLiiDEid~l~~ 257 (520)
+.. ..+.+||||+++.+..
T Consensus 152 i~~-~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 152 IEE-EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHh-hCCCEEEEechhhhcc
Confidence 221 4788999999998865
No 484
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00052 Score=64.13 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEI 192 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~ 192 (520)
..+..+-|.||+|||||||.+.++.......
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~ 57 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4567799999999999999999998765543
No 485
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.00013 Score=77.79 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.|.-
T Consensus 16 ~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4678888888877766653 334555899999999999999999999864
No 486
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.48 E-value=0.00022 Score=63.76 Aligned_cols=114 Identities=13% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC--hHHHHHHHHHHHhcC--CCChHHHH-HHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE--PKRAYSRILELLLNV--DAPPEQAK-AMLER 236 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~--~~~~~~~i~~~l~g~--~~~~~~~~-~~l~~ 236 (520)
.++..+.|.|++|+||||+++.++..+... .--+.++...... ....+ ....+. ..+..+.. -.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v~~~g~~~~~~~~~~~~----~~~i~~~~qLS~G~~qrl~lar 95 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVSFASPRDAR----RAGIAMVYQLSVGERQMVEIAR 95 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEEECCEECCcCCHHHHH----hcCeEEEEecCHHHHHHHHHHH
Confidence 466789999999999999999999876432 2234555544322 11111 110110 01111110 01111
Q ss_pred HHcCCCCceEEEEcCCc-cccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 237 HFTRPHGPCVLLIDELD-YLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 237 ~~~~~~~~~vLiiDEid-~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.+. ..|.+|++||.- .|+......+..++..... . ...+|.++++.+
T Consensus 96 al~--~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sh~~~ 143 (163)
T cd03216 96 ALA--RNARLLILDEPTAALTPAEVERLFKVIRRLRA-Q-GVAVIFISHRLD 143 (163)
T ss_pred HHh--cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHH
Confidence 111 689999999994 5665667778888865532 2 345555666644
No 487
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.48 E-value=0.0012 Score=63.71 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
.+..++|+|+||+|||+++..++...... +..+++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEec
Confidence 45679999999999999999998776543 4455565553
No 488
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00012 Score=78.98 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.+.|++.....|...+... +.+..+|||||||||||++|+++|+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG---RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC---CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888777776655532 3444579999999999999999999985
No 489
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.48 E-value=0.00045 Score=74.16 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
...+|+|+||||||+++..++..+...
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 679999999999999999999887654
No 490
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.48 E-value=0.0011 Score=65.55 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH---HHHHh-cCCCChHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI---LELLL-NVDAPPEQAKAMLERHF 238 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i---~~~l~-g~~~~~~~~~~~l~~~~ 238 (520)
.+..+.|+||||+|||+++..++...... +..++++++....++. ....+ +..+. -+.....+....+..+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~-~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPV-YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHH-HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 44578899999999999999999887655 5677888886654432 11111 11111 11223334444444333
Q ss_pred cCCCCceEEEEcCCccccc
Q psy17062 239 TRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 239 ~~~~~~~vLiiDEid~l~~ 257 (520)
. .....+||||-+-.+.+
T Consensus 130 ~-s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 130 R-SGAVDLIVVDSVAALVP 147 (325)
T ss_pred h-ccCCCEEEEcchHhhcc
Confidence 2 25788999999988864
No 491
>PRK05973 replicative DNA helicase; Provisional
Probab=97.46 E-value=0.0011 Score=62.59 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
++..++|.|+||+|||+++..++...... +.++++++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEe 102 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEY 102 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeC
Confidence 45678999999999999999999877654 55666665543
No 492
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.46 E-value=0.00026 Score=68.36 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC---hHHHHHHHHHHH----hcCCCC----hHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE---PKRAYSRILELL----LNVDAP----PEQAKA 232 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~---~~~~~~~i~~~l----~g~~~~----~~~~~~ 232 (520)
..+++|.||+|+||||+++.++..+... ..-+.+++..+.. ..++.. ....+ .|...+ ..+..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~----~G~i~~~g~~v~~~d~~~ei~~-~~~~~~q~~~~~r~~v~~~~~k~~- 184 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG----ISQLGLRGKKVGIVDERSEIAG-CVNGVPQHDVGIRTDVLDGCPKAE- 184 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC----CceEEECCEEeecchhHHHHHH-HhcccccccccccccccccchHHH-
Confidence 3689999999999999999999988543 2234444444321 112111 11101 011000 01111
Q ss_pred HHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.+...+ .+..|.||++||+. ....+..+++... .+..+|++++..+
T Consensus 185 ~~~~~i-~~~~P~villDE~~-----~~e~~~~l~~~~~---~G~~vI~ttH~~~ 230 (270)
T TIGR02858 185 GMMMLI-RSMSPDVIVVDEIG-----REEDVEALLEALH---AGVSIIATAHGRD 230 (270)
T ss_pred HHHHHH-HhCCCCEEEEeCCC-----cHHHHHHHHHHHh---CCCEEEEEechhH
Confidence 111111 11589999999974 2344555555442 2456777777543
No 493
>PRK08727 hypothetical protein; Validated
Probab=97.46 E-value=0.00018 Score=68.42 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
...++||||+|||||+|++|+++++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3459999999999999999999998764
No 494
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.46 E-value=0.00024 Score=60.53 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 472 FQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 472 ~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
...+...+...+ .++.-|+|.|+.|+|||+++|++++.|.
T Consensus 8 t~~l~~~l~~~l--~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 8 MDKFGKAFAKPL--DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 444444444333 4556799999999999999999999875
No 495
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.46 E-value=0.00017 Score=76.93 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=36.1
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.|++..+..+...+ -...+..+|||||||||||++|+++.++.++.
T Consensus 66 ~iiGqs~~i~~l~~al----~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 113 (531)
T TIGR02902 66 EIIGQEEGIKALKAAL----CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKN 113 (531)
T ss_pred HeeCcHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4677777776665433 23355689999999999999999999876643
No 496
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.45 E-value=0.00017 Score=80.03 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=50.5
Q ss_pred CChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc--CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 446 STPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS--QSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
...+.+++..|.. .+.|.+...+++..++..... ...+..++|+||||||||++|+.||..+...+
T Consensus 310 ~~~~~~~~~~l~~-----~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 310 KKDLRQAQEILDT-----DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred cccHHHHHHHhhh-----hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3467888887775 567888888888877764333 23455699999999999999999999887543
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.45 E-value=0.00013 Score=78.63 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.+.|+++....+...+. .+.+++|+||||||||++|+++|+.+...
T Consensus 18 ~~viG~~~a~~~l~~a~~------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAK------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhccCHHHHHHHHHHHHH------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 467788877776666555 33589999999999999999999999765
No 498
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.44 E-value=0.00012 Score=76.89 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..++||||||||||+|++|+|+++.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 459999999999999999999999875
No 499
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.00017 Score=75.67 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+.. .+.+..+|||||||||||++|+++|+.|.
T Consensus 16 ~diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567887777666555542 23344478999999999999999999986
No 500
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0012 Score=65.79 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA-----PPEQAKAMLERH 237 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~-----~~~~~~~~l~~~ 237 (520)
++..+||-|.||+|||||+..++..+... + +++|+.+.+-.. ++-.+ ...| |... ....-.+.+...
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~~--QiklR-A~RL-~~~~~~l~l~aEt~~e~I~~~ 163 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESLQ--QIKLR-ADRL-GLPTNNLYLLAETNLEDIIAE 163 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCHH--HHHHH-HHHh-CCCccceEEehhcCHHHHHHH
Confidence 45679999999999999999999999775 5 889998876432 11100 1111 2100 011111222222
Q ss_pred HcCCCCceEEEEcCCccccccC
Q psy17062 238 FTRPHGPCVLLIDELDYLCNKR 259 (520)
Q Consensus 238 ~~~~~~~~vLiiDEid~l~~~~ 259 (520)
+.. .+|.+++||-|+.+....
T Consensus 164 l~~-~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 164 LEQ-EKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred HHh-cCCCEEEEeccceeeccc
Confidence 222 589999999999998764
Done!