Query psy17062
Match_columns 520
No_of_seqs 389 out of 3671
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:54:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 100.0 1.9E-32 6.5E-37 268.2 14.0 227 134-362 14-285 (318)
2 3cf2_A TER ATPase, transitiona 100.0 4.7E-32 1.6E-36 294.2 12.9 301 138-514 203-537 (806)
3 4b4t_J 26S protease regulatory 99.9 4.1E-24 1.4E-28 213.9 14.5 199 136-361 145-367 (405)
4 2v1u_A Cell division control p 99.9 6E-23 2E-27 209.3 21.6 232 128-361 8-254 (387)
5 4b4t_I 26S protease regulatory 99.9 1.6E-23 5.6E-28 209.9 13.6 200 135-361 178-401 (437)
6 1r6b_X CLPA protein; AAA+, N-t 99.9 1.4E-23 4.6E-28 232.6 14.4 304 138-513 185-513 (758)
7 1qvr_A CLPB protein; coiled co 99.9 8.5E-24 2.9E-28 236.4 12.7 200 137-361 168-390 (854)
8 4b4t_L 26S protease subunit RP 99.9 3E-23 1E-27 211.1 13.9 200 135-361 177-400 (437)
9 4b4t_H 26S protease regulatory 99.9 3.4E-23 1.2E-27 209.6 14.2 199 136-361 206-428 (467)
10 3pxi_A Negative regulator of g 99.9 3.2E-23 1.1E-27 229.4 11.5 190 138-361 179-383 (758)
11 4b4t_M 26S protease regulatory 99.9 4.4E-23 1.5E-27 209.6 11.4 199 136-361 178-400 (434)
12 2qby_B CDC6 homolog 3, cell di 99.9 7.9E-22 2.7E-26 201.0 20.6 226 129-362 10-251 (384)
13 1ypw_A Transitional endoplasmi 99.9 8.8E-23 3E-27 225.6 14.3 185 137-349 202-410 (806)
14 4b4t_K 26S protease regulatory 99.9 2.1E-22 7E-27 204.6 15.2 199 136-361 169-392 (428)
15 1fnn_A CDC6P, cell division co 99.9 1.7E-21 5.8E-26 198.8 21.1 227 129-361 7-252 (389)
16 2qby_A CDC6 homolog 1, cell di 99.9 1.7E-21 6E-26 198.3 17.9 232 128-361 9-250 (386)
17 3eie_A Vacuolar protein sortin 99.8 7.1E-20 2.4E-24 182.0 19.0 195 138-361 17-233 (322)
18 1w5s_A Origin recognition comp 99.8 2.6E-19 8.8E-24 184.1 19.4 232 128-361 11-271 (412)
19 2qp9_X Vacuolar protein sortin 99.8 2E-19 6.7E-24 181.0 16.0 196 137-361 49-266 (355)
20 1xwi_A SKD1 protein; VPS4B, AA 99.8 5E-19 1.7E-23 175.6 17.3 196 138-361 11-228 (322)
21 3h4m_A Proteasome-activating n 99.8 1.9E-19 6.3E-24 175.8 14.0 196 136-361 14-236 (285)
22 3cf0_A Transitional endoplasmi 99.8 3.6E-19 1.2E-23 175.2 15.8 194 138-361 14-234 (301)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.2E-18 1.4E-22 164.0 21.5 196 137-361 4-227 (262)
24 3pfi_A Holliday junction ATP-d 99.8 3.4E-18 1.2E-22 171.1 19.3 187 139-361 29-232 (338)
25 2ce7_A Cell division protein F 99.8 3.7E-19 1.3E-23 183.8 11.4 195 138-361 15-234 (476)
26 3vfd_A Spastin; ATPase, microt 99.8 3.9E-18 1.3E-22 174.0 18.7 183 138-347 114-319 (389)
27 3syl_A Protein CBBX; photosynt 99.8 1.1E-18 3.8E-23 172.4 13.0 201 140-361 32-260 (309)
28 2chg_A Replication factor C sm 99.8 1.7E-17 5.9E-22 155.0 19.9 188 139-361 17-209 (226)
29 1lv7_A FTSH; alpha/beta domain 99.8 3.1E-18 1.1E-22 164.5 15.1 194 138-361 11-230 (257)
30 3u61_B DNA polymerase accessor 99.8 5.6E-18 1.9E-22 168.5 17.2 182 139-360 26-220 (324)
31 3pvs_A Replication-associated 99.8 4.1E-18 1.4E-22 175.8 16.4 186 138-362 25-221 (447)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 1.5E-17 5.3E-22 165.2 19.8 188 138-361 11-216 (324)
33 3cf2_A TER ATPase, transitiona 99.8 1.8E-19 6.1E-24 195.8 6.2 194 139-361 477-696 (806)
34 1ofh_A ATP-dependent HSL prote 99.8 1.5E-17 5E-22 164.2 18.3 201 140-361 16-271 (310)
35 3uk6_A RUVB-like 2; hexameric 99.8 2.4E-18 8.3E-23 174.2 13.0 234 135-388 40-327 (368)
36 3hu3_A Transitional endoplasmi 99.8 4.7E-18 1.6E-22 177.0 15.0 193 138-360 203-419 (489)
37 3d8b_A Fidgetin-like protein 1 99.8 7.7E-18 2.6E-22 169.6 15.4 193 139-360 84-299 (357)
38 2zan_A Vacuolar protein sortin 99.8 3.6E-18 1.2E-22 176.7 13.3 196 138-361 133-350 (444)
39 3b9p_A CG5977-PA, isoform A; A 99.7 3.2E-17 1.1E-21 160.9 18.3 194 138-360 20-237 (297)
40 1sxj_A Activator 1 95 kDa subu 99.7 1.7E-17 5.7E-22 175.3 15.5 202 139-361 39-257 (516)
41 1d2n_A N-ethylmaleimide-sensit 99.7 3.1E-17 1.1E-21 159.0 16.0 196 136-361 30-247 (272)
42 2dhr_A FTSH; AAA+ protein, hex 99.7 1.1E-17 3.8E-22 173.7 13.2 250 136-414 28-302 (499)
43 2r62_A Cell division protease 99.7 1.5E-19 5E-24 175.0 -1.4 197 137-361 9-231 (268)
44 1sxj_D Activator 1 41 kDa subu 99.7 1.5E-16 5.1E-21 160.0 17.4 203 139-361 37-240 (353)
45 1njg_A DNA polymerase III subu 99.7 3.7E-16 1.3E-20 147.9 19.0 200 139-361 23-233 (250)
46 1iqp_A RFCS; clamp loader, ext 99.7 1.5E-16 5.1E-21 158.1 16.4 188 139-361 25-217 (327)
47 1l8q_A Chromosomal replication 99.7 9.5E-17 3.2E-21 159.6 14.9 203 132-361 4-213 (324)
48 3bos_A Putative DNA replicatio 99.7 7.4E-17 2.5E-21 152.8 13.2 180 146-361 38-222 (242)
49 4fcw_A Chaperone protein CLPB; 99.7 1.1E-16 3.8E-21 158.1 14.3 213 139-361 17-276 (311)
50 2c9o_A RUVB-like 1; hexameric 99.7 7.3E-17 2.5E-21 167.8 12.8 128 244-388 296-434 (456)
51 1sxj_B Activator 1 37 kDa subu 99.7 3E-16 1E-20 155.6 16.6 188 139-361 21-214 (323)
52 2chq_A Replication factor C sm 99.7 1.4E-16 4.7E-21 157.8 13.4 188 139-361 17-209 (319)
53 2bjv_A PSP operon transcriptio 99.7 3.2E-16 1.1E-20 151.2 13.5 212 137-361 4-238 (265)
54 2z4s_A Chromosomal replication 99.7 9.1E-16 3.1E-20 158.4 17.4 207 131-361 97-311 (440)
55 1ojl_A Transcriptional regulat 99.7 4.7E-16 1.6E-20 152.8 12.9 208 140-361 3-233 (304)
56 1ixz_A ATP-dependent metallopr 99.7 8.1E-16 2.8E-20 147.4 14.1 196 137-361 14-234 (254)
57 1sxj_C Activator 1 40 kDa subu 99.7 2.4E-15 8.2E-20 150.5 17.7 187 140-361 26-217 (340)
58 1jr3_A DNA polymerase III subu 99.6 4.3E-15 1.5E-19 150.4 19.4 190 139-361 16-226 (373)
59 1jbk_A CLPB protein; beta barr 99.6 3.3E-16 1.1E-20 142.6 9.6 159 137-320 20-194 (195)
60 3t15_A Ribulose bisphosphate c 99.6 5.3E-16 1.8E-20 151.7 11.6 158 162-350 34-220 (293)
61 1in4_A RUVB, holliday junction 99.6 3.3E-15 1.1E-19 148.9 17.4 187 139-361 25-228 (334)
62 3pxg_A Negative regulator of g 99.6 3E-16 1E-20 163.4 10.0 190 138-361 179-383 (468)
63 3pxi_A Negative regulator of g 99.6 1.8E-15 6.2E-20 167.3 16.7 201 139-361 491-722 (758)
64 1iy2_A ATP-dependent metallopr 99.6 1.8E-15 6.2E-20 147.0 14.7 196 137-361 38-258 (278)
65 2x8a_A Nuclear valosin-contain 99.6 5.8E-15 2E-19 142.7 17.3 194 138-360 9-230 (274)
66 1a5t_A Delta prime, HOLB; zinc 99.6 8.3E-15 2.8E-19 146.1 18.7 185 141-360 4-209 (334)
67 3hws_A ATP-dependent CLP prote 99.6 4E-16 1.4E-20 157.6 8.8 200 141-361 17-320 (363)
68 1um8_A ATP-dependent CLP prote 99.6 1.3E-15 4.4E-20 154.7 12.3 201 140-361 22-337 (376)
69 1sxj_E Activator 1 40 kDa subu 99.6 5.5E-15 1.9E-19 148.6 16.0 208 133-361 5-242 (354)
70 2r44_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 148.8 13.6 197 139-361 27-275 (331)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 4.6E-15 1.6E-19 164.2 14.5 210 139-361 458-713 (758)
72 3m6a_A ATP-dependent protease 99.6 1.3E-14 4.3E-19 153.7 14.3 199 141-359 83-311 (543)
73 1qvr_A CLPB protein; coiled co 99.5 1.5E-14 5E-19 161.8 11.8 213 139-361 558-817 (854)
74 1g8p_A Magnesium-chelatase 38 99.5 2E-14 7E-19 144.2 11.2 115 243-361 144-300 (350)
75 2p65_A Hypothetical protein PF 99.5 2.4E-14 8.3E-19 129.6 9.0 150 138-312 21-187 (187)
76 3n70_A Transport activator; si 99.5 1.3E-14 4.5E-19 126.4 5.6 140 140-311 2-144 (145)
77 3co5_A Putative two-component 99.5 4.4E-14 1.5E-18 122.7 7.5 137 140-311 5-142 (143)
78 1ypw_A Transitional endoplasmi 99.5 3.4E-16 1.2E-20 173.0 -8.4 194 139-361 477-696 (806)
79 2gno_A DNA polymerase III, gam 99.5 6.7E-13 2.3E-17 129.9 15.4 172 143-358 1-175 (305)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.9E-13 9.8E-18 140.8 13.3 198 139-361 22-264 (500)
81 2qen_A Walker-type ATPase; unk 99.5 1.4E-12 4.7E-17 130.5 17.3 198 137-357 10-247 (350)
82 1g41_A Heat shock protein HSLU 99.4 4.5E-13 1.5E-17 136.4 12.3 112 243-360 250-404 (444)
83 4akg_A Glutathione S-transfera 99.4 1.3E-12 4.3E-17 157.8 16.2 180 149-361 632-838 (2695)
84 2fna_A Conserved hypothetical 99.4 2.2E-12 7.7E-17 129.2 14.6 199 136-358 10-252 (357)
85 4akg_A Glutathione S-transfera 99.3 1.5E-11 5E-16 148.6 18.5 160 152-327 1257-1434(2695)
86 1ny5_A Transcriptional regulat 99.3 1.3E-11 4.5E-16 125.2 14.1 210 139-361 137-368 (387)
87 3dzd_A Transcriptional regulat 99.3 2.9E-12 1E-16 128.9 9.0 208 140-362 130-360 (368)
88 3f9v_A Minichromosome maintena 99.2 1.2E-12 3.9E-17 139.9 -0.1 218 138-387 294-583 (595)
89 3k1j_A LON protease, ATP-depen 99.2 3.9E-11 1.3E-15 128.9 9.7 118 242-361 200-353 (604)
90 3vkg_A Dynein heavy chain, cyt 99.2 5E-10 1.7E-14 136.1 19.1 180 149-363 591-800 (3245)
91 3vkg_A Dynein heavy chain, cyt 99.1 2.9E-09 1E-13 129.5 19.3 158 153-326 1295-1471(3245)
92 1jr3_D DNA polymerase III, del 99.0 3.3E-09 1.1E-13 105.8 16.3 171 162-361 16-190 (343)
93 4b4t_J 26S protease regulatory 99.0 1.5E-10 5.1E-15 115.9 4.8 36 479-514 173-208 (405)
94 2kjq_A DNAA-related protein; s 99.0 5.5E-10 1.9E-14 97.2 6.5 106 163-303 35-141 (149)
95 3ec2_A DNA replication protein 99.0 5.7E-10 2E-14 100.5 6.9 124 144-287 19-144 (180)
96 4b4t_H 26S protease regulatory 99.0 8.6E-10 2.9E-14 111.8 8.2 35 480-514 235-269 (467)
97 4b4t_L 26S protease subunit RP 98.9 8.2E-10 2.8E-14 112.3 5.9 34 481-514 208-241 (437)
98 4b4t_M 26S protease regulatory 98.9 7.7E-10 2.6E-14 112.4 5.6 34 481-514 208-241 (434)
99 4b4t_I 26S protease regulatory 98.9 9.2E-10 3.2E-14 110.5 6.1 34 481-514 209-242 (437)
100 4b4t_K 26S protease regulatory 98.9 1.2E-09 4.3E-14 110.8 6.1 34 481-514 199-232 (428)
101 1z6t_A APAF-1, apoptotic prote 98.9 4.4E-08 1.5E-12 105.1 18.0 188 136-350 121-322 (591)
102 3cmu_A Protein RECA, recombina 98.9 2E-08 7E-13 117.9 16.2 87 162-257 1079-1173(2050)
103 2w58_A DNAI, primosome compone 98.9 4.5E-09 1.5E-13 96.4 8.4 120 146-285 36-158 (202)
104 3te6_A Regulatory protein SIR3 98.8 2.2E-09 7.6E-14 104.8 4.8 61 456-516 12-73 (318)
105 3cmw_A Protein RECA, recombina 98.8 1.6E-08 5.6E-13 117.4 12.7 85 163-257 731-824 (1706)
106 2a5y_B CED-4; apoptosis; HET: 98.7 1.6E-07 5.6E-12 99.6 16.9 188 142-356 131-336 (549)
107 2qgz_A Helicase loader, putati 98.7 5.9E-09 2E-13 102.2 4.5 120 145-285 134-257 (308)
108 3sfz_A APAF-1, apoptotic pepti 98.7 5E-07 1.7E-11 105.2 20.1 187 135-342 120-317 (1249)
109 1tue_A Replication protein E1; 98.7 3.6E-08 1.2E-12 88.9 7.2 109 164-310 58-178 (212)
110 2v1u_A Cell division control p 98.6 3.9E-08 1.3E-12 99.4 5.7 67 449-515 5-71 (387)
111 2qby_B CDC6 homolog 3, cell di 98.5 4.9E-08 1.7E-12 98.7 4.9 64 452-515 9-72 (384)
112 3f8t_A Predicted ATPase involv 98.5 1.2E-07 4.1E-12 95.9 7.3 216 141-388 215-480 (506)
113 1xwi_A SKD1 protein; VPS4B, AA 98.5 9.4E-08 3.2E-12 94.3 5.9 49 464-512 13-69 (322)
114 1u0j_A DNA replication protein 98.5 2.6E-06 8.9E-11 80.4 14.6 136 150-323 88-250 (267)
115 3h4m_A Proteasome-activating n 98.5 1.2E-07 4E-12 91.8 5.5 51 463-513 17-76 (285)
116 3eie_A Vacuolar protein sortin 98.4 1.4E-07 5E-12 93.0 5.9 51 463-513 18-76 (322)
117 2qby_A CDC6 homolog 1, cell di 98.4 1.4E-07 4.7E-12 95.2 5.7 67 450-516 7-73 (386)
118 2c9o_A RUVB-like 1; hexameric 98.4 1.6E-07 5.5E-12 97.2 6.1 52 462-513 36-88 (456)
119 3cf0_A Transitional endoplasmi 98.4 1.8E-07 6.3E-12 91.3 6.0 50 464-513 16-74 (301)
120 1fnn_A CDC6P, cell division co 98.4 2.4E-07 8.3E-12 93.6 6.7 63 452-514 6-70 (389)
121 2x8a_A Nuclear valosin-contain 98.4 1.5E-07 5.1E-12 90.6 4.3 33 481-513 37-69 (274)
122 3t15_A Ribulose bisphosphate c 98.4 1.6E-07 5.6E-12 91.3 4.3 30 484-513 32-61 (293)
123 2qp9_X Vacuolar protein sortin 98.4 2.6E-07 8.8E-12 92.4 5.3 50 464-513 52-109 (355)
124 1jbk_A CLPB protein; beta barr 98.4 4.7E-07 1.6E-11 81.4 6.4 48 463-514 22-69 (195)
125 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.8E-07 2E-11 85.6 7.3 51 463-513 6-64 (262)
126 3syl_A Protein CBBX; photosynt 98.3 6.4E-07 2.2E-11 87.6 7.1 51 464-514 32-93 (309)
127 1vt4_I APAF-1 related killer D 98.3 6.8E-06 2.3E-10 90.8 15.6 162 141-325 130-312 (1221)
128 3n70_A Transport activator; si 98.3 5.9E-07 2E-11 77.5 5.7 46 465-512 3-48 (145)
129 1d2n_A N-ethylmaleimide-sensit 98.3 5.9E-07 2E-11 86.3 5.9 52 462-513 32-89 (272)
130 3b9p_A CG5977-PA, isoform A; A 98.3 4.8E-07 1.6E-11 88.0 5.2 51 463-513 21-79 (297)
131 2p65_A Hypothetical protein PF 98.3 5.4E-07 1.8E-11 80.7 5.1 48 463-514 22-69 (187)
132 2r62_A Cell division protease 98.3 4.3E-07 1.5E-11 87.0 4.2 30 484-513 40-69 (268)
133 1lv7_A FTSH; alpha/beta domain 98.3 7.7E-07 2.6E-11 84.7 5.8 50 464-513 13-70 (257)
134 2zan_A Vacuolar protein sortin 98.3 5.5E-07 1.9E-11 92.8 5.0 50 463-512 134-191 (444)
135 1ofh_A ATP-dependent HSL prote 98.3 1.2E-06 4.1E-11 85.5 7.2 51 463-513 15-75 (310)
136 2r2a_A Uncharacterized protein 98.2 6.7E-07 2.3E-11 81.4 4.9 136 165-311 6-153 (199)
137 3uk6_A RUVB-like 2; hexameric 98.2 9.4E-07 3.2E-11 88.7 6.0 53 462-514 43-96 (368)
138 3d8b_A Fidgetin-like protein 1 98.2 8E-07 2.7E-11 88.9 5.4 51 463-513 84-142 (357)
139 1ye8_A Protein THEP1, hypothet 98.2 1.5E-05 5E-10 71.2 12.3 74 242-322 98-174 (178)
140 1w5s_A Origin recognition comp 98.2 9.2E-07 3.1E-11 90.1 4.9 65 451-515 10-79 (412)
141 3vfd_A Spastin; ATPase, microt 98.2 1E-06 3.5E-11 89.2 5.3 51 463-513 115-173 (389)
142 3hws_A ATP-dependent CLP prote 98.2 1.1E-06 3.7E-11 88.2 5.2 50 464-513 16-76 (363)
143 3hu3_A Transitional endoplasmi 98.2 1.2E-06 4.1E-11 91.0 5.4 50 463-512 204-262 (489)
144 3co5_A Putative two-component 98.2 6E-07 2.1E-11 77.3 2.6 46 465-512 6-51 (143)
145 2chg_A Replication factor C sm 98.2 2.1E-06 7E-11 79.1 6.3 48 463-514 17-64 (226)
146 2ce7_A Cell division protein F 98.2 1.9E-06 6.7E-11 88.8 6.6 50 464-513 17-74 (476)
147 2r44_A Uncharacterized protein 98.2 1.2E-06 4E-11 86.7 4.7 45 463-513 27-71 (331)
148 4fcw_A Chaperone protein CLPB; 98.1 2.4E-06 8.2E-11 83.5 6.6 52 463-514 17-73 (311)
149 3pxg_A Negative regulator of g 98.1 1.9E-06 6.5E-11 89.4 6.1 48 463-514 180-227 (468)
150 1g41_A Heat shock protein HSLU 98.1 1.7E-06 5.6E-11 88.1 5.5 51 463-513 15-75 (444)
151 3pfi_A Holliday junction ATP-d 98.1 2.1E-06 7.1E-11 85.1 6.0 51 463-513 29-80 (338)
152 1tue_A Replication protein E1; 98.1 2E-06 6.7E-11 77.6 5.2 25 489-513 59-83 (212)
153 1u0j_A DNA replication protein 98.1 3.4E-06 1.2E-10 79.7 6.0 40 473-512 87-128 (267)
154 2w58_A DNAI, primosome compone 98.1 4.5E-06 1.5E-10 76.1 6.7 44 471-514 37-80 (202)
155 2orw_A Thymidine kinase; TMTK, 98.0 2.3E-05 7.8E-10 70.4 10.5 98 164-268 3-101 (184)
156 1um8_A ATP-dependent CLP prote 98.0 5E-06 1.7E-10 83.7 6.8 50 464-513 22-97 (376)
157 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 1.8E-06 6.1E-11 89.7 3.5 44 463-512 22-65 (500)
158 3bos_A Putative DNA replicatio 98.0 4.6E-06 1.6E-10 77.9 6.0 31 485-515 49-79 (242)
159 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.2E-05 4E-10 77.9 8.8 24 164-187 123-146 (331)
160 3ec2_A DNA replication protein 98.0 4.6E-06 1.6E-10 74.6 5.7 47 468-515 19-65 (180)
161 1iqp_A RFCS; clamp loader, ext 98.0 6.4E-06 2.2E-10 80.9 7.2 47 463-513 25-71 (327)
162 3upu_A ATP-dependent DNA helic 98.0 2.2E-05 7.5E-10 81.2 11.5 27 165-191 46-72 (459)
163 1ixz_A ATP-dependent metallopr 98.0 5E-06 1.7E-10 78.8 6.1 30 484-513 45-74 (254)
164 1hqc_A RUVB; extended AAA-ATPa 98.0 5.2E-06 1.8E-10 81.6 6.4 51 463-513 12-63 (324)
165 1sxj_A Activator 1 95 kDa subu 98.0 2.9E-06 9.8E-11 89.2 4.6 50 463-512 39-101 (516)
166 1in4_A RUVB, holliday junction 98.0 5.8E-06 2E-10 81.8 6.6 50 464-513 26-76 (334)
167 1njg_A DNA polymerase III subu 98.0 7.4E-06 2.5E-10 76.3 6.8 49 463-514 23-71 (250)
168 2dhr_A FTSH; AAA+ protein, hex 98.0 6.8E-06 2.3E-10 85.3 7.1 51 463-513 31-89 (499)
169 1sxj_D Activator 1 41 kDa subu 98.0 3.7E-06 1.3E-10 83.7 4.2 48 463-514 37-84 (353)
170 1l8q_A Chromosomal replication 98.0 1.1E-05 3.8E-10 79.3 7.5 29 487-515 36-64 (324)
171 3pvs_A Replication-associated 98.0 6.3E-06 2.2E-10 84.7 5.7 48 463-514 26-76 (447)
172 1iy2_A ATP-dependent metallopr 97.9 9E-06 3.1E-10 78.2 6.3 30 484-513 69-98 (278)
173 2bjv_A PSP operon transcriptio 97.9 7.7E-06 2.6E-10 78.0 5.5 48 464-513 7-54 (265)
174 1g8p_A Magnesium-chelatase 38 97.9 3.5E-06 1.2E-10 83.8 3.1 46 464-513 25-70 (350)
175 3u61_B DNA polymerase accessor 97.9 9E-06 3.1E-10 80.0 6.0 48 463-513 26-73 (324)
176 1sxj_C Activator 1 40 kDa subu 97.9 1.2E-05 4E-10 79.8 6.3 46 464-513 26-71 (340)
177 2qgz_A Helicase loader, putati 97.9 1.6E-05 5.3E-10 77.7 6.7 27 487-513 151-177 (308)
178 2b8t_A Thymidine kinase; deoxy 97.9 4.6E-05 1.6E-09 70.3 9.2 113 162-287 10-127 (223)
179 1jr3_A DNA polymerase III subu 97.8 2.2E-05 7.6E-10 78.6 7.1 49 463-514 16-64 (373)
180 2chq_A Replication factor C sm 97.8 9.1E-06 3.1E-10 79.5 4.0 46 464-513 18-63 (319)
181 1g5t_A COB(I)alamin adenosyltr 97.8 3.8E-05 1.3E-09 68.9 7.6 117 164-286 28-163 (196)
182 1sxj_B Activator 1 37 kDa subu 97.8 1.6E-05 5.5E-10 77.9 5.5 47 463-513 21-67 (323)
183 2cvh_A DNA repair and recombin 97.8 0.00019 6.4E-09 65.9 11.9 87 162-257 18-119 (220)
184 3cmu_A Protein RECA, recombina 97.8 9.7E-05 3.3E-09 87.3 11.9 86 162-257 1425-1519(2050)
185 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00015 5.2E-09 67.1 11.1 38 163-203 22-59 (235)
186 3cmw_A Protein RECA, recombina 97.7 4.3E-05 1.5E-09 89.2 8.6 112 164-285 1082-1217(1706)
187 3e1s_A Exodeoxyribonuclease V, 97.7 6.3E-05 2.2E-09 79.7 8.6 103 164-281 204-313 (574)
188 2z4s_A Chromosomal replication 97.7 3.7E-05 1.3E-09 79.0 6.4 29 488-516 130-158 (440)
189 3kl4_A SRP54, signal recogniti 97.7 0.00045 1.6E-08 70.1 13.5 170 136-313 60-250 (433)
190 2iut_A DNA translocase FTSK; n 97.6 0.0012 4.1E-08 68.9 16.7 152 164-321 214-420 (574)
191 2r8r_A Sensor protein; KDPD, P 97.6 0.00051 1.8E-08 63.0 12.3 109 165-285 7-126 (228)
192 1cr0_A DNA primase/helicase; R 97.6 0.00022 7.4E-09 69.1 10.3 30 162-191 33-62 (296)
193 2ehv_A Hypothetical protein PH 97.6 0.00018 6.1E-09 67.5 9.4 28 162-189 28-55 (251)
194 3dm5_A SRP54, signal recogniti 97.6 0.001 3.4E-08 67.6 15.1 167 143-315 71-253 (443)
195 3hr8_A Protein RECA; alpha and 97.6 0.0003 1E-08 69.5 10.9 85 163-257 60-153 (356)
196 3m6a_A ATP-dependent protease 97.6 7.7E-05 2.6E-09 78.7 6.8 50 465-514 83-134 (543)
197 2i3b_A HCR-ntpase, human cance 97.6 0.00039 1.3E-08 62.5 10.5 25 165-189 2-26 (189)
198 2zr9_A Protein RECA, recombina 97.6 0.00038 1.3E-08 68.9 11.5 85 163-257 60-153 (349)
199 3bh0_A DNAB-like replicative h 97.5 0.00059 2E-08 66.6 11.8 53 162-219 66-118 (315)
200 2kjq_A DNAA-related protein; s 97.5 4.4E-05 1.5E-09 65.9 3.2 28 487-514 35-62 (149)
201 1sxj_E Activator 1 40 kDa subu 97.5 7.4E-05 2.5E-09 74.3 5.3 46 464-512 15-60 (354)
202 1xp8_A RECA protein, recombina 97.4 0.0016 5.4E-08 64.8 14.0 85 163-257 73-166 (366)
203 4a74_A DNA repair and recombin 97.4 0.00043 1.5E-08 63.9 9.4 44 163-206 24-70 (231)
204 3f9v_A Minichromosome maintena 97.4 2E-05 6.9E-10 83.9 -0.1 24 490-513 329-352 (595)
205 1n0w_A DNA repair protein RAD5 97.4 0.00033 1.1E-08 65.4 8.3 93 163-258 23-134 (243)
206 2dr3_A UPF0273 protein PH0284; 97.4 0.0013 4.3E-08 61.4 12.4 40 163-205 22-61 (247)
207 2j9r_A Thymidine kinase; TK1, 97.4 0.00045 1.6E-08 62.8 8.7 112 163-287 27-139 (214)
208 3tlx_A Adenylate kinase 2; str 97.4 0.0037 1.3E-07 58.5 14.6 34 162-201 27-60 (243)
209 2fz4_A DNA repair protein RAD2 97.3 0.00043 1.5E-08 64.7 8.1 24 165-188 109-132 (237)
210 3gfo_A Cobalt import ATP-bindi 97.3 0.00033 1.1E-08 66.8 7.3 48 242-290 160-208 (275)
211 3k1j_A LON protease, ATP-depen 97.3 0.00015 5E-09 77.7 5.3 44 464-513 42-85 (604)
212 2r6a_A DNAB helicase, replicat 97.3 0.0018 6.3E-08 66.6 13.1 40 162-203 201-240 (454)
213 1u94_A RECA protein, recombina 97.3 0.00072 2.4E-08 67.1 9.4 85 163-257 62-155 (356)
214 2z43_A DNA repair and recombin 97.3 0.00047 1.6E-08 67.7 7.7 93 163-257 106-217 (324)
215 1w36_D RECD, exodeoxyribonucle 97.3 0.0005 1.7E-08 73.5 8.3 27 164-190 164-190 (608)
216 2px0_A Flagellar biosynthesis 97.2 0.0018 6E-08 62.6 11.3 41 163-205 104-144 (296)
217 2qen_A Walker-type ATPase; unk 97.2 0.00024 8.2E-09 70.1 4.9 44 462-511 11-54 (350)
218 2i1q_A DNA repair and recombin 97.2 0.00087 3E-08 65.6 8.7 93 163-257 97-218 (322)
219 1nlf_A Regulatory protein REPA 97.2 0.0019 6.4E-08 61.8 10.7 27 163-189 29-55 (279)
220 3jvv_A Twitching mobility prot 97.2 0.0025 8.4E-08 63.2 11.7 30 162-191 121-150 (356)
221 2fna_A Conserved hypothetical 97.2 0.00023 7.8E-09 70.4 4.1 44 462-513 12-55 (357)
222 1gvn_B Zeta; postsegregational 97.1 0.00022 7.6E-09 68.7 3.7 28 485-512 30-57 (287)
223 1qhx_A CPT, protein (chloramph 97.1 0.0003 1E-08 62.3 4.2 33 164-202 3-35 (178)
224 2ius_A DNA translocase FTSK; n 97.1 0.0035 1.2E-07 64.9 12.8 72 245-321 299-374 (512)
225 2q6t_A DNAB replication FORK h 97.1 0.0035 1.2E-07 64.3 12.4 52 163-218 199-250 (444)
226 3be4_A Adenylate kinase; malar 97.1 0.001 3.6E-08 61.0 7.7 32 164-201 5-36 (217)
227 1w4r_A Thymidine kinase; type 97.1 0.00022 7.5E-09 63.8 2.9 37 162-202 18-55 (195)
228 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00021 7.2E-09 69.1 2.9 24 488-511 123-146 (331)
229 3io5_A Recombination and repai 97.1 0.0025 8.5E-08 61.4 10.3 84 166-257 30-125 (333)
230 4eun_A Thermoresistant glucoki 97.1 0.00033 1.1E-08 63.5 4.1 28 485-512 26-53 (200)
231 3trf_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 62.5 4.0 33 164-202 5-37 (185)
232 2c95_A Adenylate kinase 1; tra 97.1 0.00068 2.3E-08 60.9 6.0 33 163-201 8-40 (196)
233 3vaa_A Shikimate kinase, SK; s 97.0 0.00038 1.3E-08 63.0 4.2 34 163-202 24-57 (199)
234 1xx6_A Thymidine kinase; NESG, 97.0 0.00054 1.8E-08 61.6 5.0 110 163-287 7-119 (191)
235 2pcj_A ABC transporter, lipopr 97.0 0.0012 4.1E-08 61.0 7.4 28 162-189 28-55 (224)
236 3lda_A DNA repair protein RAD5 97.0 0.0022 7.4E-08 64.6 9.8 92 163-257 177-287 (400)
237 1v5w_A DMC1, meiotic recombina 97.0 0.0013 4.6E-08 64.9 8.2 93 163-257 121-233 (343)
238 2p5t_B PEZT; postsegregational 97.0 0.00044 1.5E-08 65.3 4.2 29 485-513 29-57 (253)
239 1svm_A Large T antigen; AAA+ f 97.0 0.002 6.7E-08 64.3 9.0 28 161-188 166-193 (377)
240 1pzn_A RAD51, DNA repair and r 97.0 0.0021 7.3E-08 63.6 9.3 95 162-257 129-245 (349)
241 2bwj_A Adenylate kinase 5; pho 97.0 0.00082 2.8E-08 60.5 5.7 32 164-201 12-43 (199)
242 4a1f_A DNAB helicase, replicat 97.0 0.0037 1.2E-07 61.3 10.5 53 162-219 44-96 (338)
243 3iij_A Coilin-interacting nucl 96.9 0.00058 2E-08 60.6 4.4 32 164-201 11-42 (180)
244 1gvn_B Zeta; postsegregational 96.9 0.00044 1.5E-08 66.6 3.9 35 163-203 32-66 (287)
245 2olj_A Amino acid ABC transpor 96.9 0.0018 6.1E-08 61.3 8.0 28 162-189 48-75 (263)
246 2eyu_A Twitching motility prot 96.9 0.0034 1.2E-07 59.4 9.9 31 161-191 22-52 (261)
247 3kb2_A SPBC2 prophage-derived 96.9 0.00062 2.1E-08 59.7 4.4 31 166-202 3-33 (173)
248 3umf_A Adenylate kinase; rossm 96.9 0.00052 1.8E-08 63.0 3.6 26 487-512 28-53 (217)
249 1svm_A Large T antigen; AAA+ f 96.9 0.00061 2.1E-08 68.0 4.4 30 483-512 164-193 (377)
250 3rlf_A Maltose/maltodextrin im 96.9 0.00058 2E-08 68.0 4.2 28 162-189 27-54 (381)
251 2v3c_C SRP54, signal recogniti 96.9 0.012 4.2E-07 59.7 14.1 38 164-204 99-136 (432)
252 1rz3_A Hypothetical protein rb 96.9 0.0018 6.1E-08 58.7 7.1 48 143-191 2-49 (201)
253 1y63_A LMAJ004144AAA protein; 96.9 0.00067 2.3E-08 60.5 4.2 34 163-202 9-43 (184)
254 3tui_C Methionine import ATP-b 96.9 0.0018 6.1E-08 64.1 7.4 45 242-287 180-225 (366)
255 3bgw_A DNAB-like replicative h 96.8 0.0073 2.5E-07 61.7 12.2 40 162-204 195-234 (444)
256 1zuh_A Shikimate kinase; alpha 96.8 0.00068 2.3E-08 59.4 3.9 32 164-201 7-38 (168)
257 3umf_A Adenylate kinase; rossm 96.8 0.0027 9.2E-08 58.2 7.9 84 162-254 27-118 (217)
258 1vma_A Cell division protein F 96.8 0.0032 1.1E-07 61.0 8.8 38 163-203 103-140 (306)
259 2rhm_A Putative kinase; P-loop 96.8 0.00069 2.4E-08 60.7 3.8 31 164-200 5-35 (193)
260 1via_A Shikimate kinase; struc 96.8 0.00073 2.5E-08 59.7 3.9 30 166-201 6-35 (175)
261 2iyv_A Shikimate kinase, SK; t 96.8 0.00067 2.3E-08 60.4 3.6 32 165-202 3-34 (184)
262 1g6h_A High-affinity branched- 96.8 0.0023 7.8E-08 60.4 7.4 46 242-289 170-216 (257)
263 1vpl_A ABC transporter, ATP-bi 96.8 0.0019 6.4E-08 60.9 6.7 28 162-189 39-66 (256)
264 3tlx_A Adenylate kinase 2; str 96.8 0.00073 2.5E-08 63.3 3.8 28 485-512 26-53 (243)
265 4eun_A Thermoresistant glucoki 96.8 0.0013 4.4E-08 59.5 5.3 28 161-188 26-53 (200)
266 1kag_A SKI, shikimate kinase I 96.8 0.0009 3.1E-08 58.8 4.2 24 165-188 5-28 (173)
267 2cdn_A Adenylate kinase; phosp 96.8 0.00097 3.3E-08 60.3 4.3 34 162-201 18-51 (201)
268 1aky_A Adenylate kinase; ATP:A 96.8 0.0011 3.6E-08 61.1 4.6 33 163-201 3-35 (220)
269 2orv_A Thymidine kinase; TP4A 96.8 0.0024 8.2E-08 58.6 6.9 109 163-289 18-129 (234)
270 2it1_A 362AA long hypothetical 96.7 0.0025 8.5E-08 63.2 7.4 28 162-189 27-54 (362)
271 1z47_A CYSA, putative ABC-tran 96.7 0.0021 7.2E-08 63.5 6.9 28 162-189 39-66 (355)
272 3tif_A Uncharacterized ABC tra 96.7 0.0023 7.8E-08 59.6 6.7 28 162-189 29-56 (235)
273 1sgw_A Putative ABC transporte 96.7 0.0049 1.7E-07 56.3 8.8 46 242-289 150-196 (214)
274 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0021 7.2E-08 63.0 6.6 47 143-189 3-49 (359)
275 1kht_A Adenylate kinase; phosp 96.7 0.00096 3.3E-08 59.6 3.9 26 164-189 3-28 (192)
276 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00089 3.1E-08 66.2 3.8 28 162-189 28-55 (359)
277 3uie_A Adenylyl-sulfate kinase 96.7 0.0019 6.4E-08 58.4 5.7 41 161-204 22-62 (200)
278 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0044 1.5E-07 63.1 8.8 96 162-259 149-261 (473)
279 1e6c_A Shikimate kinase; phosp 96.7 0.0012 4E-08 58.0 4.2 31 165-201 3-33 (173)
280 2yvu_A Probable adenylyl-sulfa 96.7 0.0016 5.5E-08 58.1 5.1 39 161-202 10-48 (186)
281 3cm0_A Adenylate kinase; ATP-b 96.7 0.0013 4.4E-08 58.6 4.3 31 164-200 4-34 (186)
282 2p5t_B PEZT; postsegregational 96.7 0.0016 5.5E-08 61.3 5.2 39 162-206 30-68 (253)
283 3llm_A ATP-dependent RNA helic 96.7 0.0049 1.7E-07 57.2 8.4 24 164-187 76-99 (235)
284 1tev_A UMP-CMP kinase; ploop, 96.6 0.0012 4.2E-08 59.0 4.2 32 164-201 3-34 (196)
285 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.5E-08 59.5 4.3 31 164-200 18-48 (202)
286 1zp6_A Hypothetical protein AT 96.6 0.00084 2.9E-08 60.1 3.0 36 163-204 8-43 (191)
287 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 58.2 3.6 29 166-201 3-31 (179)
288 2j37_W Signal recognition part 96.6 0.015 5E-07 60.2 12.6 37 164-203 101-137 (504)
289 1g29_1 MALK, maltose transport 96.6 0.0015 5.3E-08 65.0 5.1 28 162-189 27-54 (372)
290 2ze6_A Isopentenyl transferase 96.6 0.0014 4.6E-08 61.9 4.5 33 166-204 3-35 (253)
291 1knq_A Gluconate kinase; ALFA/ 96.6 0.0016 5.5E-08 57.3 4.7 26 163-188 7-32 (175)
292 1nks_A Adenylate kinase; therm 96.6 0.0015 5.1E-08 58.3 4.5 34 166-202 3-36 (194)
293 1q57_A DNA primase/helicase; d 96.6 0.011 3.8E-07 61.6 11.7 54 163-220 241-294 (503)
294 1htw_A HI0065; nucleotide-bind 96.6 0.0023 8E-08 55.5 5.4 30 483-512 28-57 (158)
295 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0021 7.2E-08 60.8 5.3 37 164-203 4-40 (260)
296 1ak2_A Adenylate kinase isoenz 96.5 0.0018 6.3E-08 60.1 4.8 33 163-201 15-47 (233)
297 2pez_A Bifunctional 3'-phospho 96.5 0.0023 7.8E-08 56.6 5.1 38 163-203 4-41 (179)
298 1ly1_A Polynucleotide kinase; 96.5 0.0014 4.6E-08 57.9 3.5 22 165-186 3-24 (181)
299 2pjz_A Hypothetical protein ST 96.5 0.0051 1.7E-07 58.2 7.7 120 162-291 29-190 (263)
300 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.8E-08 60.5 3.6 32 164-201 7-38 (227)
301 2pt5_A Shikimate kinase, SK; a 96.5 0.0016 5.4E-08 56.9 3.8 30 166-201 2-31 (168)
302 3c8u_A Fructokinase; YP_612366 96.5 0.0024 8E-08 58.2 5.1 44 162-206 20-63 (208)
303 2ewv_A Twitching motility prot 96.5 0.011 3.9E-07 58.8 10.4 30 162-191 134-163 (372)
304 1qf9_A UMP/CMP kinase, protein 96.5 0.0018 6E-08 57.9 4.0 32 164-201 6-37 (194)
305 3fb4_A Adenylate kinase; psych 96.5 0.0016 5.5E-08 59.5 3.7 30 166-201 2-31 (216)
306 1ukz_A Uridylate kinase; trans 96.5 0.0017 5.7E-08 58.8 3.8 32 164-201 15-46 (203)
307 1oxx_K GLCV, glucose, ABC tran 96.4 0.0023 7.7E-08 63.3 4.9 121 162-282 29-198 (353)
308 1qde_A EIF4A, translation init 96.4 0.0065 2.2E-07 55.7 7.8 42 242-286 154-196 (224)
309 3nwj_A ATSK2; P loop, shikimat 96.4 0.0019 6.5E-08 60.6 4.1 26 488-513 48-73 (250)
310 1v43_A Sugar-binding transport 96.4 0.0025 8.5E-08 63.4 5.1 28 162-189 35-62 (372)
311 3upu_A ATP-dependent DNA helic 96.4 0.0031 1.1E-07 65.0 6.1 44 467-515 29-72 (459)
312 2z0h_A DTMP kinase, thymidylat 96.4 0.0042 1.4E-07 55.6 6.3 35 166-203 2-36 (197)
313 2yyz_A Sugar ABC transporter, 96.4 0.0024 8.1E-08 63.2 4.9 28 162-189 27-54 (359)
314 2vli_A Antibiotic resistance p 96.4 0.0012 4.1E-08 58.5 2.5 30 164-199 5-34 (183)
315 1j8m_F SRP54, signal recogniti 96.4 0.018 6.2E-07 55.4 10.9 40 164-206 98-137 (297)
316 1zak_A Adenylate kinase; ATP:A 96.4 0.0021 7.3E-08 59.1 4.2 25 164-188 5-29 (222)
317 3dl0_A Adenylate kinase; phosp 96.4 0.0015 5.1E-08 59.8 3.0 30 166-201 2-31 (216)
318 2nq2_C Hypothetical ABC transp 96.4 0.0024 8.3E-08 60.1 4.6 120 163-282 30-186 (253)
319 3ice_A Transcription terminati 96.4 0.011 3.7E-07 58.5 9.2 101 154-258 164-276 (422)
320 3iuy_A Probable ATP-dependent 96.4 0.012 3.9E-07 54.2 9.1 29 242-270 166-195 (228)
321 3e70_C DPA, signal recognition 96.4 0.016 5.3E-07 56.7 10.4 31 162-192 127-157 (328)
322 3crm_A TRNA delta(2)-isopenten 96.4 0.0028 9.7E-08 61.5 4.9 35 165-205 6-40 (323)
323 3sr0_A Adenylate kinase; phosp 96.4 0.003 1E-07 57.4 4.9 92 166-269 2-99 (206)
324 2pbr_A DTMP kinase, thymidylat 96.4 0.0056 1.9E-07 54.6 6.6 35 166-203 2-36 (195)
325 3vkw_A Replicase large subunit 96.3 0.0025 8.5E-08 64.5 4.5 24 163-186 160-183 (446)
326 3ice_A Transcription terminati 96.3 0.0037 1.3E-07 61.8 5.6 41 477-517 163-203 (422)
327 1tf7_A KAIC; homohexamer, hexa 96.3 0.012 4.1E-07 61.6 10.0 117 162-286 279-417 (525)
328 2a5y_B CED-4; apoptosis; HET: 96.3 0.0028 9.5E-08 66.9 5.1 44 466-510 131-174 (549)
329 1odf_A YGR205W, hypothetical 3 96.3 0.0052 1.8E-07 59.0 6.6 44 472-515 13-58 (290)
330 1vec_A ATP-dependent RNA helic 96.3 0.02 6.9E-07 51.5 10.3 29 242-270 145-174 (206)
331 1m7g_A Adenylylsulfate kinase; 96.3 0.0058 2E-07 55.6 6.5 40 162-203 23-62 (211)
332 1z6t_A APAF-1, apoptotic prote 96.3 0.0026 9E-08 67.7 4.8 50 461-512 122-171 (591)
333 3b6e_A Interferon-induced heli 96.3 0.011 3.8E-07 53.5 8.4 42 142-190 33-74 (216)
334 3hr8_A Protein RECA; alpha and 96.3 0.0022 7.6E-08 63.3 3.8 28 487-514 60-87 (356)
335 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0019 6.6E-08 58.5 2.9 111 163-287 27-139 (219)
336 2ehv_A Hypothetical protein PH 96.2 0.0023 8E-08 59.7 3.5 27 486-512 28-54 (251)
337 2gxq_A Heat resistant RNA depe 96.2 0.019 6.4E-07 51.7 9.5 29 242-270 143-172 (207)
338 2zr9_A Protein RECA, recombina 96.2 0.0027 9.3E-08 62.8 4.1 29 487-515 60-88 (349)
339 1e4v_A Adenylate kinase; trans 96.2 0.0025 8.7E-08 58.2 3.6 30 166-201 2-31 (214)
340 1nn5_A Similar to deoxythymidy 96.2 0.0047 1.6E-07 56.1 5.4 29 163-191 8-36 (215)
341 3a8t_A Adenylate isopentenyltr 96.2 0.0015 5.1E-08 63.7 2.0 27 487-513 39-65 (339)
342 2v9p_A Replication protein E1; 96.2 0.0032 1.1E-07 60.8 4.3 30 483-512 121-150 (305)
343 2jaq_A Deoxyguanosine kinase; 96.2 0.0039 1.3E-07 56.2 4.7 28 166-199 2-29 (205)
344 3tkl_A RAS-related protein RAB 96.2 0.013 4.5E-07 52.0 8.2 23 165-187 17-39 (196)
345 1nlf_A Regulatory protein REPA 96.2 0.003 1E-07 60.3 4.1 28 487-514 29-56 (279)
346 3kl4_A SRP54, signal recogniti 96.2 0.006 2.1E-07 61.8 6.3 54 462-515 62-124 (433)
347 3d31_A Sulfate/molybdate ABC t 96.2 0.0081 2.8E-07 59.2 7.1 28 162-189 24-51 (348)
348 1cke_A CK, MSSA, protein (cyti 96.2 0.0047 1.6E-07 56.8 5.1 29 165-199 6-34 (227)
349 1u94_A RECA protein, recombina 96.2 0.0035 1.2E-07 62.0 4.5 29 487-515 62-90 (356)
350 1kao_A RAP2A; GTP-binding prot 96.2 0.044 1.5E-06 46.8 11.2 23 165-187 4-26 (167)
351 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0035 1.2E-07 61.5 4.3 111 149-287 158-276 (330)
352 1cr0_A DNA primase/helicase; R 96.1 0.0036 1.2E-07 60.3 4.3 32 484-515 31-62 (296)
353 2xb4_A Adenylate kinase; ATP-b 96.1 0.0047 1.6E-07 56.8 4.9 30 166-201 2-31 (223)
354 2if2_A Dephospho-COA kinase; a 96.1 0.0029 9.9E-08 57.2 3.4 31 166-203 3-33 (204)
355 3dkp_A Probable ATP-dependent 96.1 0.017 5.9E-07 53.7 8.9 24 165-188 67-91 (245)
356 2qmh_A HPR kinase/phosphorylas 96.1 0.0016 5.6E-08 58.3 1.6 27 487-513 33-59 (205)
357 3nwj_A ATSK2; P loop, shikimat 96.1 0.0045 1.5E-07 58.1 4.7 32 164-201 48-79 (250)
358 3foz_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 59.3 4.8 37 164-206 10-46 (316)
359 3dm5_A SRP54, signal recogniti 96.1 0.0069 2.4E-07 61.4 6.2 52 464-515 68-127 (443)
360 1z0j_A RAB-22, RAS-related pro 96.1 0.012 4E-07 50.8 7.1 23 165-187 7-29 (170)
361 3a8t_A Adenylate isopentenyltr 96.1 0.0033 1.1E-07 61.3 3.7 36 164-205 40-75 (339)
362 3r20_A Cytidylate kinase; stru 96.1 0.0058 2E-07 56.6 5.2 31 164-200 9-39 (233)
363 2qor_A Guanylate kinase; phosp 96.1 0.003 1E-07 57.2 3.2 26 163-188 11-36 (204)
364 1kgd_A CASK, peripheral plasma 96.0 0.0042 1.4E-07 55.1 4.1 25 164-188 5-29 (180)
365 4b3f_X DNA-binding protein smu 96.0 0.0074 2.5E-07 65.0 6.7 41 145-191 192-232 (646)
366 2xxa_A Signal recognition part 96.0 0.028 9.5E-07 57.1 10.6 42 163-206 99-140 (433)
367 2plr_A DTMP kinase, probable t 96.0 0.004 1.4E-07 56.5 3.9 26 164-189 4-29 (213)
368 3fe2_A Probable ATP-dependent 96.0 0.048 1.6E-06 50.6 11.5 29 242-270 175-204 (242)
369 2zts_A Putative uncharacterize 96.0 0.0055 1.9E-07 57.1 5.0 30 486-515 28-57 (251)
370 3io5_A Recombination and repai 96.0 0.004 1.4E-07 59.9 3.9 29 487-515 27-55 (333)
371 3e70_C DPA, signal recognition 96.0 0.011 3.6E-07 57.9 6.9 30 486-515 127-156 (328)
372 1r8s_A ADP-ribosylation factor 96.0 0.039 1.3E-06 47.2 9.9 22 166-187 2-23 (164)
373 3zvl_A Bifunctional polynucleo 96.0 0.0039 1.3E-07 63.3 3.9 26 163-188 257-282 (416)
374 3jvv_A Twitching mobility prot 96.0 0.0045 1.5E-07 61.3 4.3 30 486-515 121-150 (356)
375 1q0u_A Bstdead; DEAD protein, 96.0 0.017 5.7E-07 52.8 7.8 29 242-270 149-178 (219)
376 2ffh_A Protein (FFH); SRP54, s 96.0 0.024 8.1E-07 57.3 9.5 37 164-203 98-134 (425)
377 3tau_A Guanylate kinase, GMP k 96.0 0.0048 1.6E-07 56.1 4.0 27 162-188 6-32 (208)
378 2grj_A Dephospho-COA kinase; T 95.9 0.0051 1.8E-07 55.2 4.1 32 165-202 13-44 (192)
379 1ex7_A Guanylate kinase; subst 95.9 0.0044 1.5E-07 55.2 3.6 24 165-188 2-25 (186)
380 2wwf_A Thymidilate kinase, put 95.9 0.005 1.7E-07 55.9 4.0 29 163-191 9-37 (212)
381 2bbw_A Adenylate kinase 4, AK4 95.9 0.0054 1.8E-07 57.3 4.3 26 163-188 26-51 (246)
382 1ls1_A Signal recognition part 95.9 0.021 7.2E-07 54.9 8.6 38 163-203 97-134 (295)
383 3exa_A TRNA delta(2)-isopenten 95.9 0.0052 1.8E-07 59.1 4.1 34 165-204 4-37 (322)
384 3ber_A Probable ATP-dependent 95.9 0.042 1.5E-06 51.3 10.3 29 242-270 185-214 (249)
385 3e1s_A Exodeoxyribonuclease V, 95.8 0.0051 1.7E-07 65.0 4.2 27 488-514 204-230 (574)
386 2v6i_A RNA helicase; membrane, 95.8 0.021 7.3E-07 58.1 8.8 27 164-190 2-29 (431)
387 2px0_A Flagellar biosynthesis 95.8 0.0064 2.2E-07 58.6 4.5 31 487-517 104-134 (296)
388 4e22_A Cytidylate kinase; P-lo 95.8 0.0067 2.3E-07 57.0 4.6 31 163-199 26-56 (252)
389 1rj9_A FTSY, signal recognitio 95.8 0.0061 2.1E-07 59.0 4.4 28 487-514 101-128 (304)
390 3tr0_A Guanylate kinase, GMP k 95.8 0.0063 2.1E-07 54.9 4.2 26 163-188 6-31 (205)
391 3aez_A Pantothenate kinase; tr 95.8 0.012 4E-07 57.2 6.2 29 485-513 87-115 (312)
392 3lxw_A GTPase IMAP family memb 95.8 0.023 7.8E-07 53.1 8.0 23 164-186 21-43 (247)
393 3bor_A Human initiation factor 95.8 0.0077 2.6E-07 55.9 4.7 42 242-286 172-214 (237)
394 1xp8_A RECA protein, recombina 95.8 0.0062 2.1E-07 60.5 4.2 28 487-514 73-100 (366)
395 1s2m_A Putative ATP-dependent 95.8 0.035 1.2E-06 55.5 10.0 22 165-186 59-80 (400)
396 3b9q_A Chloroplast SRP recepto 95.8 0.0063 2.1E-07 58.8 4.1 30 486-515 98-127 (302)
397 1rif_A DAR protein, DNA helica 95.8 0.062 2.1E-06 51.1 11.2 52 142-202 113-164 (282)
398 3t1o_A Gliding protein MGLA; G 95.7 0.031 1E-06 49.5 8.5 24 165-188 15-38 (198)
399 1g8f_A Sulfate adenylyltransfe 95.7 0.007 2.4E-07 62.6 4.7 60 453-514 362-421 (511)
400 1lvg_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 55.1 3.6 25 164-188 4-28 (198)
401 1vma_A Cell division protein F 95.7 0.0065 2.2E-07 58.8 4.1 29 487-515 103-131 (306)
402 2ewv_A Twitching motility prot 95.7 0.0058 2E-07 61.0 3.8 31 485-515 133-163 (372)
403 2j41_A Guanylate kinase; GMP, 95.7 0.0067 2.3E-07 54.7 4.0 26 163-188 5-30 (207)
404 1xjc_A MOBB protein homolog; s 95.7 0.012 4E-07 51.5 5.3 28 164-191 4-31 (169)
405 3ney_A 55 kDa erythrocyte memb 95.7 0.0072 2.4E-07 54.4 4.0 27 162-188 17-43 (197)
406 3asz_A Uridine kinase; cytidin 95.7 0.0083 2.8E-07 54.4 4.5 26 163-188 5-30 (211)
407 3ake_A Cytidylate kinase; CMP 95.7 0.0076 2.6E-07 54.4 4.2 30 166-201 4-33 (208)
408 3fvq_A Fe(3+) IONS import ATP- 95.7 0.0053 1.8E-07 60.6 3.3 29 483-511 25-53 (359)
409 3tqc_A Pantothenate kinase; bi 95.7 0.011 3.7E-07 57.5 5.5 27 487-513 91-117 (321)
410 2zj8_A DNA helicase, putative 95.7 0.058 2E-06 58.8 11.9 115 164-286 39-179 (720)
411 3tif_A Uncharacterized ABC tra 95.7 0.005 1.7E-07 57.2 2.9 29 483-511 26-54 (235)
412 2il1_A RAB12; G-protein, GDP, 95.7 0.056 1.9E-06 48.0 9.8 22 166-187 28-49 (192)
413 1v5w_A DMC1, meiotic recombina 95.6 0.0079 2.7E-07 59.3 4.5 27 486-512 120-146 (343)
414 2cbz_A Multidrug resistance-as 95.6 0.0051 1.7E-07 57.3 2.9 29 483-511 26-54 (237)
415 1hv8_A Putative ATP-dependent 95.6 0.03 1E-06 55.1 8.8 24 165-188 45-68 (367)
416 1odf_A YGR205W, hypothetical 3 95.6 0.015 5.2E-07 55.7 6.3 44 148-191 13-58 (290)
417 3b5x_A Lipid A export ATP-bind 95.6 0.024 8E-07 60.2 8.4 119 162-285 367-538 (582)
418 3eph_A TRNA isopentenyltransfe 95.6 0.01 3.5E-07 59.2 5.2 33 165-203 3-35 (409)
419 3l0o_A Transcription terminati 95.6 0.012 4.1E-07 58.1 5.5 38 479-516 166-203 (427)
420 3bc1_A RAS-related protein RAB 95.6 0.069 2.3E-06 47.0 10.3 23 165-187 12-34 (195)
421 3zvl_A Bifunctional polynucleo 95.6 0.0043 1.5E-07 63.0 2.5 26 487-512 257-282 (416)
422 3pey_A ATP-dependent RNA helic 95.6 0.041 1.4E-06 54.6 9.8 24 163-186 43-66 (395)
423 2z43_A DNA repair and recombin 95.6 0.0067 2.3E-07 59.3 3.7 28 486-513 105-132 (324)
424 2efe_B Small GTP-binding prote 95.6 0.037 1.3E-06 48.3 8.3 23 165-187 13-35 (181)
425 3a00_A Guanylate kinase, GMP k 95.6 0.0057 2E-07 54.5 2.9 25 165-189 2-26 (186)
426 3d3q_A TRNA delta(2)-isopenten 95.6 0.0089 3E-07 58.4 4.5 34 165-204 8-41 (340)
427 2v54_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 54.9 3.2 25 164-188 4-28 (204)
428 2oil_A CATX-8, RAS-related pro 95.6 0.032 1.1E-06 49.5 7.8 23 165-187 26-48 (193)
429 2pcj_A ABC transporter, lipopr 95.5 0.0047 1.6E-07 57.0 2.2 28 484-511 26-53 (224)
430 3dz8_A RAS-related protein RAB 95.5 0.036 1.2E-06 49.1 8.1 23 165-187 24-46 (191)
431 2oxc_A Probable ATP-dependent 95.5 0.019 6.5E-07 52.9 6.4 29 242-270 165-195 (230)
432 1b0u_A Histidine permease; ABC 95.5 0.0059 2E-07 57.7 2.9 29 483-511 27-55 (262)
433 2yyz_A Sugar ABC transporter, 95.5 0.0069 2.4E-07 59.9 3.4 29 483-511 24-52 (359)
434 2zu0_C Probable ATP-dependent 95.5 0.0071 2.4E-07 57.4 3.4 29 483-511 41-69 (267)
435 1q3t_A Cytidylate kinase; nucl 95.5 0.013 4.4E-07 54.3 5.2 33 162-200 14-46 (236)
436 3cr8_A Sulfate adenylyltranfer 95.5 0.0083 2.8E-07 62.9 4.2 29 485-513 366-394 (552)
437 3tqc_A Pantothenate kinase; bi 95.5 0.016 5.5E-07 56.3 6.0 44 163-206 91-135 (321)
438 3rlf_A Maltose/maltodextrin im 95.5 0.0069 2.4E-07 60.2 3.4 29 483-511 24-52 (381)
439 2ew1_A RAS-related protein RAB 95.5 0.041 1.4E-06 49.4 8.4 23 165-187 27-49 (201)
440 1sgw_A Putative ABC transporte 95.5 0.0054 1.8E-07 56.1 2.4 27 485-511 32-58 (214)
441 2va8_A SSO2462, SKI2-type heli 95.5 0.076 2.6E-06 57.8 12.0 37 164-203 46-83 (715)
442 2og2_A Putative signal recogni 95.5 0.009 3.1E-07 59.1 4.1 30 486-515 155-184 (359)
443 2zts_A Putative uncharacterize 95.5 0.016 5.5E-07 53.8 5.7 40 163-204 29-68 (251)
444 1jjv_A Dephospho-COA kinase; P 95.5 0.0067 2.3E-07 54.9 3.0 28 166-200 4-31 (206)
445 2bdt_A BH3686; alpha-beta prot 95.5 0.0066 2.3E-07 54.1 2.9 23 165-187 3-25 (189)
446 2olj_A Amino acid ABC transpor 95.5 0.0064 2.2E-07 57.5 2.9 28 484-511 46-73 (263)
447 2it1_A 362AA long hypothetical 95.5 0.0073 2.5E-07 59.8 3.4 29 483-511 24-52 (362)
448 1htw_A HI0065; nucleotide-bind 95.4 0.0084 2.9E-07 51.9 3.4 27 162-188 31-57 (158)
449 1z06_A RAS-related protein RAB 95.4 0.066 2.3E-06 47.2 9.5 23 165-187 21-43 (189)
450 1t6n_A Probable ATP-dependent 95.4 0.071 2.4E-06 48.4 9.9 24 165-188 52-75 (220)
451 2hup_A RAS-related protein RAB 95.4 0.077 2.6E-06 47.5 10.0 23 165-187 30-52 (201)
452 3thx_A DNA mismatch repair pro 95.4 0.05 1.7E-06 60.5 10.2 23 164-186 662-684 (934)
453 4b3f_X DNA-binding protein smu 95.4 0.015 5.2E-07 62.5 6.1 22 490-511 207-228 (646)
454 1v43_A Sugar-binding transport 95.4 0.0077 2.6E-07 59.9 3.4 28 484-511 33-60 (372)
455 3fmo_B ATP-dependent RNA helic 95.4 0.024 8.1E-07 54.7 6.8 28 161-188 128-156 (300)
456 1z47_A CYSA, putative ABC-tran 95.4 0.0067 2.3E-07 59.9 2.9 28 484-511 37-64 (355)
457 3thx_B DNA mismatch repair pro 95.4 0.036 1.2E-06 61.4 9.1 24 164-187 673-696 (918)
458 3h1t_A Type I site-specific re 95.4 0.066 2.2E-06 56.8 10.9 49 141-191 177-225 (590)
459 3ly5_A ATP-dependent RNA helic 95.4 0.035 1.2E-06 52.3 7.8 29 242-270 200-229 (262)
460 2fg5_A RAB-22B, RAS-related pr 95.4 0.031 1.1E-06 49.6 7.2 23 165-187 24-46 (192)
461 2j37_W Signal recognition part 95.4 0.029 9.9E-07 58.0 7.7 30 486-515 99-128 (504)
462 1s96_A Guanylate kinase, GMP k 95.4 0.011 3.7E-07 54.3 4.1 27 162-188 14-40 (219)
463 2axn_A 6-phosphofructo-2-kinas 95.4 0.0091 3.1E-07 62.3 3.9 28 487-514 34-61 (520)
464 2oap_1 GSPE-2, type II secreti 95.4 0.0097 3.3E-07 61.9 4.1 26 487-512 259-284 (511)
465 1wb9_A DNA mismatch repair pro 95.4 0.076 2.6E-06 58.2 11.3 27 163-189 606-632 (800)
466 1g6h_A High-affinity branched- 95.3 0.0064 2.2E-07 57.3 2.5 27 485-511 30-56 (257)
467 2fwr_A DNA repair protein RAD2 95.3 0.033 1.1E-06 57.3 8.2 38 144-188 95-132 (472)
468 1vht_A Dephospho-COA kinase; s 95.3 0.01 3.5E-07 54.2 3.8 30 165-201 5-34 (218)
469 2z0m_A 337AA long hypothetical 95.3 0.052 1.8E-06 52.6 9.2 23 165-187 32-54 (337)
470 4edh_A DTMP kinase, thymidylat 95.3 0.024 8.2E-07 51.7 6.3 36 164-202 6-41 (213)
471 1pzn_A RAD51, DNA repair and r 95.3 0.0071 2.4E-07 59.8 2.9 29 485-513 128-156 (349)
472 2d2e_A SUFC protein; ABC-ATPas 95.3 0.0075 2.6E-07 56.6 2.9 29 483-511 24-52 (250)
473 1z0f_A RAB14, member RAS oncog 95.3 0.057 1.9E-06 46.8 8.6 23 165-187 16-38 (179)
474 2f6r_A COA synthase, bifunctio 95.3 0.011 3.8E-07 56.5 4.2 32 164-202 75-106 (281)
475 2ixe_A Antigen peptide transpo 95.3 0.0075 2.6E-07 57.3 2.9 29 483-511 40-68 (271)
476 3eiq_A Eukaryotic initiation f 95.3 0.022 7.4E-07 57.3 6.5 41 242-285 182-223 (414)
477 1ji0_A ABC transporter; ATP bi 95.3 0.0065 2.2E-07 56.7 2.4 28 484-511 28-55 (240)
478 2f6r_A COA synthase, bifunctio 95.3 0.0088 3E-07 57.2 3.4 23 488-510 75-97 (281)
479 2pze_A Cystic fibrosis transme 95.3 0.0065 2.2E-07 56.2 2.4 28 484-511 30-57 (229)
480 3bh0_A DNAB-like replicative h 95.3 0.012 4.2E-07 57.2 4.5 29 485-513 65-93 (315)
481 2bme_A RAB4A, RAS-related prot 95.3 0.071 2.4E-06 46.7 9.2 23 165-187 11-33 (186)
482 1sq5_A Pantothenate kinase; P- 95.3 0.019 6.7E-07 55.5 5.9 43 470-512 59-104 (308)
483 1sky_E F1-ATPase, F1-ATP synth 95.3 0.014 4.9E-07 59.3 5.1 34 484-517 147-180 (473)
484 2ghi_A Transport protein; mult 95.3 0.0077 2.6E-07 56.9 2.9 29 483-511 41-69 (260)
485 2yhs_A FTSY, cell division pro 95.3 0.011 3.8E-07 60.6 4.2 31 485-515 290-320 (503)
486 1vpl_A ABC transporter, ATP-bi 95.3 0.0078 2.7E-07 56.6 2.9 28 484-511 37-64 (256)
487 1rj9_A FTSY, signal recognitio 95.3 0.017 5.8E-07 55.8 5.3 29 163-191 101-129 (304)
488 2g6b_A RAS-related protein RAB 95.3 0.099 3.4E-06 45.4 10.0 23 165-187 11-33 (180)
489 2yz2_A Putative ABC transporte 95.3 0.008 2.7E-07 57.0 2.9 29 483-511 28-56 (266)
490 1mv5_A LMRA, multidrug resista 95.3 0.0068 2.3E-07 56.6 2.4 29 483-511 23-51 (243)
491 1znw_A Guanylate kinase, GMP k 95.3 0.01 3.5E-07 53.8 3.5 27 162-188 18-44 (207)
492 2bov_A RAla, RAS-related prote 95.3 0.11 3.6E-06 46.4 10.3 23 165-187 15-37 (206)
493 3gfo_A Cobalt import ATP-bindi 95.3 0.0067 2.3E-07 57.7 2.3 28 484-511 30-57 (275)
494 1uj2_A Uridine-cytidine kinase 95.2 0.0097 3.3E-07 55.8 3.4 26 163-188 21-46 (252)
495 2qmh_A HPR kinase/phosphorylas 95.2 0.0072 2.5E-07 54.1 2.3 25 164-188 34-58 (205)
496 3lxx_A GTPase IMAP family memb 95.2 0.031 1.1E-06 51.7 6.9 23 165-187 30-52 (239)
497 3q72_A GTP-binding protein RAD 95.2 0.041 1.4E-06 47.2 7.2 21 166-186 4-24 (166)
498 3hjn_A DTMP kinase, thymidylat 95.2 0.029 1E-06 50.4 6.4 37 167-206 3-39 (197)
499 2ff7_A Alpha-hemolysin translo 95.2 0.0071 2.4E-07 56.6 2.4 28 484-511 31-58 (247)
500 1zd9_A ADP-ribosylation factor 95.2 0.074 2.5E-06 46.9 9.1 23 165-187 23-45 (188)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-32 Score=268.21 Aligned_cols=227 Identities=18% Similarity=0.216 Sum_probs=193.3
Q ss_pred CCCCCCC-CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCC
Q psy17062 134 LSRVPES-LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPE 208 (520)
Q Consensus 134 ~~~~p~~-l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~ 208 (520)
.++.+.. |+||++|+..|..+|...+..+.++++||+||||||||++++.+++++...... .+.++++||..+.+
T Consensus 14 ~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 14 ESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred hccCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 3444444 899999999999999999999999999999999999999999999999764321 47899999999999
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
+..+|..|+.++.|...........+...|... ..+.||||||+|.+. .+++|+.+++|.....+++++|+++|
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n 171 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGG 171 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEec
Confidence 999999999999887544333445566666542 678999999999998 78999999999876788999999999
Q ss_pred CCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCC------------------------------------
Q psy17062 285 TMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN------------------------------------ 328 (520)
Q Consensus 285 ~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~------------------------------------ 328 (520)
+.+++++.+.+++.+||...+|+|+||+.+++.+||+.++....
T Consensus 172 ~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINH 251 (318)
T ss_dssp SSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECE
T ss_pred CcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc
Confidence 99988877888999999877899999999999999999997631
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 329 CFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 329 ~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
.+++++++++|++++..+||+|+|+++|+.|+..
T Consensus 252 ~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 252 KINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp ECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 3689999999999888999999999999999873
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=4.7e-32 Score=294.18 Aligned_cols=301 Identities=18% Similarity=0.232 Sum_probs=196.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.+.|.++++++|.+.+.-.+. ..++.++|||||||||||++|+++|+++ +.+++.++|.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l-- 274 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEI-- 274 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHH--
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHh--
Confidence 34578888888888887754222 1467899999999999999999999998 999999998764
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh--------HHHHHHH---HhcCCCCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ--------DVIYNIL---EYLNKPKS 275 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~--------~~L~~ll---~~~~~~~~ 275 (520)
.+++.|+ ....++..|..+ ..|+||||||+|.+...+. .++.+++ +... ...
T Consensus 275 --------~sk~~ge------se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-~~~ 339 (806)
T 3cf2_A 275 --------MSKLAGE------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp --------HSSCTTH------HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-GGG
T ss_pred --------hcccchH------HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-ccC
Confidence 2333333 667777888776 7899999999999987532 2344444 4332 356
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
+++||++||+++.++.. +.+ ||.. +|+|+.|+.+++.+||+.+++......+..++.||..++++.|....+
T Consensus 340 ~V~VIaaTN~~d~LD~A----LrR~GRFd~-~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~- 413 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPA----LRRFGRFDR-EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA- 413 (806)
T ss_dssp CEEEEEECSSTTTSCTT----TTSTTSSCE-EEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH-
T ss_pred CEEEEEecCChhhcCHH----HhCCcccce-EEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH-
Confidence 79999999999866544 444 8874 599999999999999999998875566778999999999988865443
Q ss_pred HHHHhhhccCCCCceeccc----ccch-----hhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCC
Q psy17062 354 NHYTNEKKSKSKYWDWVSS----SSDE-----EEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSS 424 (520)
Q Consensus 354 ~~l~~a~~~~~~~~~~~a~----~~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (520)
+|..|+..+.+....... .... ..++.++...+. ... .|..
T Consensus 414 -Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al-------------~~~----------------~ps~ 463 (806)
T 3cf2_A 414 -LCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL-------------SQS----------------NPSA 463 (806)
T ss_dssp -HHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHH-------------SSS----------------SCCC
T ss_pred -HHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHH-------------HhC----------------CCcc
Confidence 455544211000000000 0000 000111111110 000 0111
Q ss_pred cccccccCCCCCCccCCCCCCCChHHHhHhhcCCCCCCC-CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHH
Q psy17062 425 IKKTVTLTPTLPKRLTAPLTPSTPLQLARESLHLSRVPE-SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTA 503 (520)
Q Consensus 425 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~ 503 (520)
.... .+.+|.+ .|.+++++..+++.|....... ..+.. ...++..++.|||||||||||||+
T Consensus 464 ~r~~---~~~~p~v---~w~diggl~~~k~~l~e~v~~p~~~p~~-----------f~~~g~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 464 LRET---VVEVPQV---TWEDIGGLEDVKRELQELVQYPVEHPDK-----------FLKFGMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCC---CCBCCCC---CSTTCCSCHHHHHHHTTTTTTTTTCSGG-----------GSSSCCCCCSCCEEESSTTSSHHH
T ss_pred cccc---cccCCCC---CHHHhCCHHHHHHHHHHHHHhhhhCHHH-----------HHhcCCCCCceEEEecCCCCCchH
Confidence 1111 1223333 4556677788888777644321 11111 233457899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17062 504 TVHAVMRKLKQ 514 (520)
Q Consensus 504 lAkalA~~l~~ 514 (520)
+|+|||+++.-
T Consensus 527 lAkaiA~e~~~ 537 (806)
T 3cf2_A 527 LAKAIANECQA 537 (806)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHhCC
Confidence 99999998753
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-24 Score=213.86 Aligned_cols=199 Identities=18% Similarity=0.282 Sum_probs=154.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+++.++|.+.+.--+ .-.++.++|||||||||||++|+++|.++ +.+++.+++.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 218 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAEL 218 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHh
Confidence 344568899999999888766422 23567889999999999999999999999 999999999887
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN-- 271 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~-- 271 (520)
.+ ++.|+ ....++.+|..+ ..|+||||||+|.+...+ ...+.++|.++.
T Consensus 219 ~s----------k~vGe------se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 219 VQ----------KYIGE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp SC----------SSTTH------HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hc----------cccch------HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 53 33343 667778888777 789999999999998643 224566665442
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
....+++||++||+++.++.++.++ +||+. .|+|+.|+.+++.+||+.+++......+..++.||+.+.|++|....
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRp--GRfD~-~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~ 359 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRP--GRIDR-KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK 359 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHST--TSSCC-EEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCC--CcCce-EEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH
Confidence 3456899999999999766544221 48874 49999999999999999999887555666799999999999887655
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
.+|..|+.
T Consensus 360 --~l~~eA~~ 367 (405)
T 4b4t_J 360 --GVCTEAGM 367 (405)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 36666654
No 4
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.90 E-value=6e-23 Score=209.32 Aligned_cols=232 Identities=27% Similarity=0.404 Sum_probs=187.9
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEEccc
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI---GDKFVYVEMNAL 204 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~---~~~~~~i~v~~~ 204 (520)
.++.+...+.|+.++||+++++.+..++........+.+++|+||+|||||++++.+++.+.... ..+..+++++|.
T Consensus 8 ~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 8 KRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 45667888999999999999999999998876667788999999999999999999999886542 125789999999
Q ss_pred cCCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHcCCCCceEEEEcCCcccccc--ChHHHHHHHHhcCCC--CC
Q psy17062 205 SIPEPKRAYSRILELLLNVDA-----PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK--RQDVIYNILEYLNKP--KS 275 (520)
Q Consensus 205 ~~~~~~~~~~~i~~~l~g~~~-----~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~--~~~~L~~ll~~~~~~--~~ 275 (520)
...++..++..++..+. ... ........+...+.....+.||||||+|.+... .++.|+.++++.... ..
T Consensus 88 ~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVG-VRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp TSCSHHHHHHHHHHHHS-CCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred cCCCHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence 99999999999988873 321 233445555556555467899999999999887 678999999877432 56
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN---NNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~---~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
++.+|+++|..+... .+.+++.+||....+.|++|+.+++.+|+..++.. ...+++++++.+++.+....|++|.+
T Consensus 167 ~~~~I~~t~~~~~~~-~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 167 WVSLVGITNSLGFVE-NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp -CEEEEECSCSTTSS-SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHH
T ss_pred eEEEEEEECCCchHh-hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHH
Confidence 889999999876544 35778889997656999999999999999998864 25788999999999977677999999
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
+++|+.++.
T Consensus 246 ~~~l~~a~~ 254 (387)
T 2v1u_A 246 LDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-23 Score=209.86 Aligned_cols=200 Identities=17% Similarity=0.252 Sum_probs=153.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
+...+.+.|.+++.+.|.+.+.-.+. -..+.++|||||||||||++|+++|.++ +.+++.+++.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~ 251 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSE 251 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGG
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHH
Confidence 34445688999999999887765322 2567899999999999999999999999 99999999988
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL-- 270 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~-- 270 (520)
+.+ .+.|+ ....++.+|..+ ..|+||||||+|.+...+ ...+..+|.++
T Consensus 252 l~s----------k~vGe------sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 LIQ----------KYLGD------GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GCC----------SSSSH------HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hhh----------ccCch------HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 753 33333 566677777766 789999999999998753 23455565543
Q ss_pred CCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 271 NKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 271 ~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
.....+++||++||+++.++.++.++ .||+. .|+|+.|+.+++.+||+.+++......+..++.||..+.+++|...
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRp--GRfD~-~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRP--GRIDR-KILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADI 392 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCT--TTEEE-EECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcC--CceeE-EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHH
Confidence 23456899999999999766544321 48864 4999999999999999999988655556679999999999988655
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
. .+|..|+.
T Consensus 393 ~--~l~~eA~~ 401 (437)
T 4b4t_I 393 Q--AMCTEAGL 401 (437)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 5 36666654
No 6
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.90 E-value=1.4e-23 Score=232.64 Aligned_cols=304 Identities=12% Similarity=0.128 Sum_probs=187.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~ 213 (520)
.+.++||+.++.++.+.|.. ....++||+||||||||++|+.+++.+...... +..++.+++..+...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~---- 256 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG---- 256 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC----
T ss_pred CCCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc----
Confidence 45689999999999888754 356789999999999999999999998654221 456677666554210
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----hHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----QDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
..+.| .....+...+... ..+.||||||+|.+.... ...+.++|.... ....+.+|++++..
T Consensus 257 ----~~~~g------~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 257 ----TKYRG------DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQ 325 (758)
T ss_dssp ----CCCSS------CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SSCCCEEEEEECHH
T ss_pred ----ccccc------hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hCCCeEEEEEeCch
Confidence 00111 1333444444333 357999999999996431 223334443222 25678899988864
Q ss_pred CCchh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHcCCCCC---CHHHHHHHHH
Q psy17062 287 DLPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN-----NNCFHPDAVQLVARLEPPTSR---SEIFCANHYT 357 (520)
Q Consensus 287 ~~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~-----~~~~~~~~l~~la~~~~~~~G---~~r~al~~l~ 357 (520)
+.... ..++++.+||. .+.|++|+.+++.+||...+.. ...+++++++.++....++.+ .+..++++++
T Consensus 326 ~~~~~~~~d~aL~~Rf~--~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld 403 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQ--KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_dssp HHHCCCCCTTSSGGGEE--EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCce--EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHH
Confidence 32211 13567888996 4999999999999999987754 266889999999887666444 3567888888
Q ss_pred hhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCCCCCCCCCCCCcccccccCCCCCC
Q psy17062 358 NEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSSHKPNVSTPSSIKKTVTLTPTLPK 437 (520)
Q Consensus 358 ~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (520)
.++...... ........++..++..+... . ...|.. .
T Consensus 404 ~a~~~~~~~----~~~~~~~~v~~~di~~~~~~-------------~-------------------------~~ip~~-~ 440 (758)
T 1r6b_X 404 EAGARARLM----PVSKRKKTVNVADIESVVAR-------------I-------------------------ARIPEK-S 440 (758)
T ss_dssp HHHHHHHHS----SSCCCCCSCCHHHHHHHHHH-------------H-------------------------SCCCCC-C
T ss_pred HHHHHHhcc----cccccCCccCHHHHHHHHHH-------------h-------------------------cCCCcc-c
Confidence 776421000 00000111111111111000 0 000100 0
Q ss_pred ccCCCCCCCChHHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhc-----CCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 438 RLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.....+....+.|. ..+.|++..+..+...+..... .++.+++|||||||||||++|++||+.+
T Consensus 441 ---~~~~~~~~l~~l~~~l~-----~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 441 ---VSQSDRDTLKNLGDRLK-----MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp ---SSSSHHHHHHHHHHHHT-----TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ---cchhHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 00111123444444444 4678899989888877765432 2455579999999999999999999988
Q ss_pred H
Q psy17062 513 K 513 (520)
Q Consensus 513 ~ 513 (520)
.
T Consensus 513 ~ 513 (758)
T 1r6b_X 513 G 513 (758)
T ss_dssp T
T ss_pred c
Confidence 4
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.90 E-value=8.5e-24 Score=236.42 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=135.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~ 212 (520)
..+.++||+.++.++...|.. +..++++|+||||||||++++.+++.+...... +..++++++..+...
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g--- 240 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG--- 240 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred CCcccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc---
Confidence 345689999999999988854 445679999999999999999999998653221 678899998765321
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCcccccc--------ChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 213 YSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNK--------RQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~--------~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
..+.|. ....+...+... ..++||||||+|.+... ..+.|..+++ ...+.+|+
T Consensus 241 -----~~~~g~------~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i~~I~ 304 (854)
T 1qvr_A 241 -----AKYRGE------FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGELRLIG 304 (854)
T ss_dssp ----------C------HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-----TTCCCEEE
T ss_pred -----CccchH------HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCeEEEE
Confidence 112222 333344444332 46899999999999743 2345666665 45778899
Q ss_pred EEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHH
Q psy17062 282 IANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCA 353 (520)
Q Consensus 282 ~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al 353 (520)
++|..+.....+++++.+||.. |.|++|+.+++.+||+..+... ..++++++..++....++..+ +..++
T Consensus 305 at~~~~~~~~~~d~aL~rRf~~--i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALERRFQP--VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp EECHHHHHHHTTCTTTCSCCCC--EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred ecCchHHhhhccCHHHHhCCce--EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 8886543222246789999975 9999999999999998776532 567899999999987776555 88899
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
++++.++.
T Consensus 383 ~lldea~a 390 (854)
T 1qvr_A 383 DLIDEAAA 390 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887763
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3e-23 Score=211.07 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=153.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
+...+.+.|.+++++.|.+.+.-.+. -.++.++|||||||||||++|+++|.++ +.+++.+++.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~ 250 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASG 250 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhh
Confidence 44456688999999998887765322 2567899999999999999999999999 99999999998
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC-
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN- 271 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~- 271 (520)
+.+ ++.|+ ....++..|..+ ..|+||||||+|.+...+ ...+..+|.++.
T Consensus 251 l~s----------k~~Ge------se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 251 IVD----------KYIGE------SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp TCC----------SSSSH------HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred hcc----------ccchH------HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 753 23333 556677777766 789999999999998653 224555555442
Q ss_pred -CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 272 -KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 272 -~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
....+++||++||+++.++..+.++ .||.. .|+|+.|+.+++.+||+.++......++..++.+|+.+.+++|...
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRp--GRfD~-~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi 391 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRP--GRLDR-KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADI 391 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTST--TSEEE-EECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHH
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCC--Cccce-eeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHH
Confidence 2356789999999999776554322 46763 5999999999999999999998765566779999999999988655
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
. .+|..|+.
T Consensus 392 ~--~l~~eA~~ 400 (437)
T 4b4t_L 392 R--NCATEAGF 400 (437)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 4 35666654
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-23 Score=209.61 Aligned_cols=199 Identities=16% Similarity=0.260 Sum_probs=152.7
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+++.++|.+.+.-.+ .-.++.++|||||||||||++|+++|.++ +.+++.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSEL 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHh
Confidence 444678999999999988765421 23578899999999999999999999999 999999999887
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhc--C
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYL--N 271 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~--~ 271 (520)
.+ .+.|+ ....++.+|..+ ..|+||||||+|.+...+ ...+..+|.++ .
T Consensus 280 ~s----------k~vGe------sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 280 VQ----------KYVGE------GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp CC----------CSSSH------HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred hc----------ccCCH------HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 53 33333 566777777766 789999999999998653 22455555544 2
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
....+++||++||+++.++..+.+ .+||.. .|+|+.|+.+++.+||+.+++......+..++.||+.+.+++|....
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlR--pGRFD~-~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~ 420 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLR--PGRIDR-KVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR 420 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHS--TTTCCE-EECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhc--cccccE-EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHH
Confidence 345689999999999876644322 148874 59999999999999999999886555566789999999999886554
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
.+|..|+.
T Consensus 421 --~l~~eAa~ 428 (467)
T 4b4t_H 421 --SVCTEAGM 428 (467)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 36666654
No 10
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.88 E-value=3.2e-23 Score=229.36 Aligned_cols=190 Identities=13% Similarity=0.122 Sum_probs=127.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~ 213 (520)
.+.++||+++++++...|.. ...+++||+||||||||++|+++++.+.....+ +..++.+++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g--------- 245 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---------
Confidence 35689999999999988854 455789999999999999999999998543211 5566766661
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch-
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE- 290 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~- 290 (520)
..+.|. ....+...|... ..++||||| .....++.|...++ ...+.+|+++|..+...
T Consensus 246 ----~~~~G~------~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~-----~~~v~~I~at~~~~~~~~ 306 (758)
T 3pxi_A 246 ----TKYRGE------FEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLA-----RGELQCIGATTLDEYRKY 306 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTT-----SSSCEEEEECCTTTTHHH
T ss_pred ----ccccch------HHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHh-----cCCEEEEeCCChHHHHHH
Confidence 111222 112222233222 478999999 22223334444443 56789999999876422
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCC---CHHHHHHHHHhhhc
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSR---SEIFCANHYTNEKK 361 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G---~~r~al~~l~~a~~ 361 (520)
..+++++.+||.. |.|++|+.+++.+||+..+... ..+++++++.++....++.+ .+..++++++.++.
T Consensus 307 ~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 307 IEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp HTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred hhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 1256788899954 9999999999999999877653 56899999999887766533 46788888887753
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.4e-23 Score=209.64 Aligned_cols=199 Identities=17% Similarity=0.259 Sum_probs=150.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+++.++|.+.+...+ .-.++.++|||||||||||++|+++|.++ +.+++.+++.++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQL 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhh
Confidence 334568899999999887755422 22567899999999999999999999999 999999999887
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN-- 271 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~-- 271 (520)
.+ .+.|+ ....++.+|..+ ..|+||||||+|.+...+ ...+..+|.++.
T Consensus 252 ~~----------~~vGe------se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 VQ----------MYIGE------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CS----------SCSSH------HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hh----------cccch------HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 53 23333 556667777665 689999999999997653 124555555442
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
....+++||++||+++.++.++.+ ..||.. .|+|+.|+.+++.+||+.+++......+..++.||+.+.+++|....
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllR--pGRfD~-~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLR--SGRLDR-KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK 392 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCS--TTSEEE-EEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHhHhc--CCceeE-EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH
Confidence 235678999999999976654422 248864 59999999999999999999886555566789999999999886555
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
.+|..|+.
T Consensus 393 --~l~~eA~~ 400 (434)
T 4b4t_M 393 --AVTVEAGM 400 (434)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 36666654
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.88 E-value=7.9e-22 Score=201.04 Aligned_cols=226 Identities=17% Similarity=0.271 Sum_probs=181.1
Q ss_pred HhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----C-CeEEEEEcc
Q psy17062 129 RESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG----D-KFVYVEMNA 203 (520)
Q Consensus 129 ~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----~-~~~~i~v~~ 203 (520)
+..+...+.|+.++||+++++.+..++.....+..+.+++|+||+|||||++++.+++.+..... . +..+++++|
T Consensus 10 ~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 10 KVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred HhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 34455566788999999999999999998877777889999999999999999999999866421 1 468899999
Q ss_pred ccCC-ChHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHcCCCCceEEEEcCCccccccC-hHH-HHHHHHhcCCCCC
Q psy17062 204 LSIP-EPKRAYSRILELLLNVDAP-----PEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR-QDV-IYNILEYLNKPKS 275 (520)
Q Consensus 204 ~~~~-~~~~~~~~i~~~l~g~~~~-----~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~-~~~-L~~ll~~~~~~~~ 275 (520)
.... ++..++..++..+.|.... .......+...+.. .+.||||||+|.+.... ++. ++.++++. .
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~ 163 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----A 163 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTTSHHHHHHHHTSS----S
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCCCceeHHHHhcCC----c
Confidence 9988 9999999999988655322 23344445444433 22399999999998764 778 88888755 6
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN---NNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~---~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
++.+|+++|...... .+.+++.+||.. .+.|++|+.+++.+|+..++.. ...+++++++.+++.+....|++|.+
T Consensus 164 ~~~iI~~t~~~~~~~-~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a 241 (384)
T 2qby_B 164 NISVIMISNDINVRD-YMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKA 241 (384)
T ss_dssp CEEEEEECSSTTTTT-TSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHH
T ss_pred ceEEEEEECCCchHh-hhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHH
Confidence 889999999875444 256778889865 6999999999999999998863 15688999999999987778999999
Q ss_pred HHHHHhhhcc
Q psy17062 353 ANHYTNEKKS 362 (520)
Q Consensus 353 l~~l~~a~~~ 362 (520)
+++|+.+...
T Consensus 242 ~~~l~~a~~~ 251 (384)
T 2qby_B 242 VNLLFRAAQL 251 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=8.8e-23 Score=225.55 Aligned_cols=185 Identities=19% Similarity=0.266 Sum_probs=134.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
..+.++|.+.++++|.+++...+. ...+.++||+||||||||+++++++..+ +..++.++|.++.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 275 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEEHHHHS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEEchHhh
Confidence 345689999999999998876322 2456789999999999999999999988 8889999986653
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcCCCC
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNKPK 274 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~~~ 274 (520)
. .+ .......+...|..+ ..+++|||||+|.+.... ...|+.+++... ..
T Consensus 276 ~----------~~------~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 276 S----------KL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp S----------SS------TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred h----------hh------hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 2 11 111333444444444 468999999999987642 123555555433 34
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSE 349 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~ 349 (520)
..+++|+++|+.+.++. .+.+ ||. ..+.++.|+.+++.+|++.++.......+..+..++..+.++.|..
T Consensus 339 ~~v~vI~atn~~~~ld~----al~r~gRf~-~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~d 410 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDP----ALRRFGRFD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp SCCEEEEECSCTTTSCT----TTTSTTSSC-EEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHH
T ss_pred ccEEEecccCCchhcCH----HHhcccccc-cccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHH
Confidence 67889999999875543 3333 775 4489999999999999999888766666667888888877766643
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-22 Score=204.62 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=151.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
...+.+.|.+++.+.|.+.+...+. -.++.++|||||||||||++|+++|.++ +.+++.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 3445688999999998887765322 2567889999999999999999999999 999999999887
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN-- 271 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~-- 271 (520)
.+ .+.|+ ....++.+|..+ ..|+||||||+|.+...+ ...+.++|.++.
T Consensus 243 ~~----------~~~Ge------~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 243 VH----------KYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp CC----------SSCSH------HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hc----------cccch------hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 53 23333 566677777766 789999999999997653 224555554432
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeC-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFK-PYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~-~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
....+++||++||+++.++..+.++ .||.. .|+|| .|+.+++..|++.+++.....++..++.||..+.+++|...
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRp--GRfd~-~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi 383 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRP--GRLDR-KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVI 383 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSS--SSEEE-EEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcC--CcceE-EEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHH
Confidence 2456899999999998766544221 47864 49997 78999999999999998765566679999999999988655
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
. .+|+.|+.
T Consensus 384 ~--~l~~eA~~ 392 (428)
T 4b4t_K 384 A--AIMQEAGL 392 (428)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 5 36777664
No 15
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.88 E-value=1.7e-21 Score=198.79 Aligned_cols=227 Identities=19% Similarity=0.272 Sum_probs=177.6
Q ss_pred HhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCC--eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 129 RESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTG--CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 129 ~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~--~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
++.+...+.|+.++||+.+++.+..++.....+..+. +++|+||+|+|||++++.+++.+.... +..+++++|...
T Consensus 7 ~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~ 84 (389)
T 1fnn_A 7 DSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIY 84 (389)
T ss_dssp GGGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTC
T ss_pred HhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccC
Confidence 3457778899999999999999999999877766666 899999999999999999999874421 368899999998
Q ss_pred CChHHHHHHHHHHHhcC----CCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCC-C---CcEE
Q psy17062 207 PEPKRAYSRILELLLNV----DAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKP-K---SRLI 278 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~----~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~-~---~~v~ 278 (520)
.++..++..++..+... ..........+...+.....+.||||||+|.+.. ..+..++.+.... . .++.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~---~~~~~L~~~~~~~~~~~~~~~~ 161 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP---DILSTFIRLGQEADKLGAFRIA 161 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH---HHHHHHHHHTTCHHHHSSCCEE
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch---HHHHHHHHHHHhCCCCCcCCEE
Confidence 88889988888776321 1234445555665655556789999999999944 4444444443221 2 5888
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHcCCC------CCCH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN---NNCFHPDAVQLVARLEPPT------SRSE 349 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~---~~~~~~~~l~~la~~~~~~------~G~~ 349 (520)
+|+++|..+.... +.+++.+||....+.|++++.+++.+++..++.. ...+++++++.++..+.+. .|++
T Consensus 162 iI~~~~~~~~~~~-l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~ 240 (389)
T 1fnn_A 162 LVIVGHNDAVLNN-LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDA 240 (389)
T ss_dssp EEEEESSTHHHHT-SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCH
T ss_pred EEEEECCchHHHH-hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcH
Confidence 9999998754333 5677888887657999999999999999998864 2578999999999997655 8999
Q ss_pred HHHHHHHHhhhc
Q psy17062 350 IFCANHYTNEKK 361 (520)
Q Consensus 350 r~al~~l~~a~~ 361 (520)
|.++++|+.+..
T Consensus 241 r~~~~~l~~a~~ 252 (389)
T 1fnn_A 241 RLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 16
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.87 E-value=1.7e-21 Score=198.27 Aligned_cols=232 Identities=25% Similarity=0.400 Sum_probs=179.2
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
.++.+...+.|+.++||+.+++.+..++........+.+++|+||+|||||++++.+++.+......+..+++++|....
T Consensus 9 ~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 9 NREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred chhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 34567778899999999999999999998766677778999999999999999999999886653214678999998888
Q ss_pred ChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHcCCCCceEEEEcCCccccccC-hHHHHHHHHhcCC-CCCcEEEE
Q psy17062 208 EPKRAYSRILELLLNVDA-----PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR-QDVIYNILEYLNK-PKSRLIIL 280 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~-----~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~-~~~L~~ll~~~~~-~~~~v~vI 280 (520)
++..++..++..+ +... ........+...+.....+.||||||+|.+.... ++.+..++++... ...++.+|
T Consensus 89 ~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 89 TPYRVLADLLESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp SHHHHHHHHTTTT-SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEE
T ss_pred CHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEE
Confidence 8887777776655 2211 2334455555555554569999999999998764 6777777765522 35688999
Q ss_pred EEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 281 ~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
++++..+.... +...+.+||....+.|++++.+++.+++..++... ..+++++++.++..+....|+++.++++|.
T Consensus 168 ~~~~~~~~~~~-~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~ 246 (386)
T 2qby_A 168 GITNDVKFVDL-LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLR 246 (386)
T ss_dssp EEESCGGGGGG-CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEECCCChHhh-hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99998764443 46678888865579999999999999999987632 578899999999986545599999999999
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.++.
T Consensus 247 ~a~~ 250 (386)
T 2qby_A 247 VSGE 250 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=7.1e-20 Score=181.97 Aligned_cols=195 Identities=14% Similarity=0.228 Sum_probs=145.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|.+...+.|.+.+..... ..++.++||+||||||||++|+++++++ +.++++++|.++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l--- 87 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDL--- 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHH---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHH---
Confidence 35688999999999888753221 2345789999999999999999999998 889999998654
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcCCCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNKPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~~~~~ 276 (520)
...+.|. ....+...|..+ ..++||||||+|.+...+ +..|+..++.......+
T Consensus 88 -------~~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 88 -------VSKWMGE------SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -------HTTTGGG------HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -------hhcccch------HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 2223332 344455555544 578999999999998753 34456666655445678
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||++||.++. +++++.+||.. .+.|+.|+.+++.+|++.++... ..++++.++.|+..+.+++|.. ...+
T Consensus 155 v~vi~atn~~~~----ld~al~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d--i~~l 227 (322)
T 3eie_A 155 VLVLGATNIPWQ----LDSAIRRRFER-RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD--IAVV 227 (322)
T ss_dssp EEEEEEESCGGG----SCHHHHHHCCE-EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH--HHHH
T ss_pred eEEEEecCChhh----CCHHHHcccCe-EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH--HHHH
Confidence 999999998764 45677778864 49999999999999999999876 4568999999999988776633 2245
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
|+.|+.
T Consensus 228 ~~~a~~ 233 (322)
T 3eie_A 228 VKDALM 233 (322)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 665543
No 18
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.82 E-value=2.6e-19 Score=184.11 Aligned_cols=232 Identities=18% Similarity=0.249 Sum_probs=174.3
Q ss_pred HHhhccCCCCCCCCCchHHHHHHHHHHH-HHHhhc--CCCCeEEE--EcCCCCcHHHHHHHHHHHHHHHh---CCCeEEE
Q psy17062 128 ARESLHLSRVPESLPCREAEFQSIHRFL-LSKISQ--STTGCMYI--SGVPGTGKTATVHAVMRKLKQEI---GDKFVYV 199 (520)
Q Consensus 128 ~~~~l~~~~~p~~l~gr~~ei~~l~~~L-~~~~~~--~~~~~lLl--~G~~GtGKT~la~~la~~l~~~~---~~~~~~i 199 (520)
.+..+...+.|..++||+.+++.+..++ .....+ ..+.+++| +|++|+|||++++.+++.+.... ..+..++
T Consensus 11 ~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 11 DRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp CGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3455777888999999999999999999 776555 46678999 99999999999999999886531 1146789
Q ss_pred EEccccCCChHHHHHHHHHHHhcCC----CChHHHHHHHHHHHcCCCCceEEEEcCCcccccc---ChHHHHHHHHhcCC
Q psy17062 200 EMNALSIPEPKRAYSRILELLLNVD----APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK---RQDVIYNILEYLNK 272 (520)
Q Consensus 200 ~v~~~~~~~~~~~~~~i~~~l~g~~----~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~---~~~~L~~ll~~~~~ 272 (520)
+++|....++..++..++..+.... .........+...+.....+.||||||+|++... ..+.+..++.+...
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 9999888889999999888873221 1233445555555543357899999999999764 45666666554421
Q ss_pred -C--C--CcEEEEEEEcCCCCchhhhh---hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHH
Q psy17062 273 -P--K--SRLIILCIANTMDLPERTLK---GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHPDAVQLVARL 341 (520)
Q Consensus 273 -~--~--~~v~vI~~tn~~~~~~~~l~---~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~~~l~~la~~ 341 (520)
. . .++.+|++++..+... .+. +.+.+++... +.|++++.+++.+++..++... ..+++++++.++..
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~-~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALS-YMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHH-HHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred cccCCCCceEEEEEEeccccHHH-HHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 1 3 7888999888665433 234 5666777654 9999999999999998877532 35789999999999
Q ss_pred cCCCC---CCHHHHHHHHHhhhc
Q psy17062 342 EPPTS---RSEIFCANHYTNEKK 361 (520)
Q Consensus 342 ~~~~~---G~~r~al~~l~~a~~ 361 (520)
+.... |+++.++.++..+..
T Consensus 249 ~~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHH
Confidence 65444 999999999887654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=2e-19 Score=180.96 Aligned_cols=196 Identities=14% Similarity=0.219 Sum_probs=139.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
..+.++|.+..++.|.+.+...+. ..++.++||+||||||||++|+++++++ +.+++.++|.++.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~- 121 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV- 121 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh-
Confidence 345689999999999888754311 1345679999999999999999999999 8899999887542
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcCCCCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLNKPKS 275 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~~~~~ 275 (520)
..+.|. ....+...|..+ ..++||||||+|.+...+ .+.|+..++.......
T Consensus 122 ---------~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 122 ---------SKWMGE------SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---------SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ---------hhhcch------HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 222222 223334444433 578999999999998642 3445566665544456
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHcCCCCCCHHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN-CFHPDAVQLVARLEPPTSRSEIFCAN 354 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~-~~~~~~l~~la~~~~~~~G~~r~al~ 354 (520)
+++||+++|..+. +++.+.+||.. .+.|++|+.+++.+||+.++.... .+++..++.|++.+.++.|.. ...
T Consensus 187 ~v~vI~atn~~~~----ld~al~rRf~~-~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~d--l~~ 259 (355)
T 2qp9_X 187 GVLVLGATNIPWQ----LDSAIRRRFER-RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD--IAV 259 (355)
T ss_dssp CEEEEEEESCGGG----SCHHHHHTCCE-EEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHH--HHH
T ss_pred CeEEEeecCCccc----CCHHHHcccCE-EEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHH--HHH
Confidence 8999999998763 45567778864 499999999999999999998763 468999999999988776632 223
Q ss_pred HHHhhhc
Q psy17062 355 HYTNEKK 361 (520)
Q Consensus 355 ~l~~a~~ 361 (520)
+|+.|+.
T Consensus 260 l~~~A~~ 266 (355)
T 2qp9_X 260 VVKDALM 266 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 20
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=175.57 Aligned_cols=196 Identities=16% Similarity=0.243 Sum_probs=141.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.+.|.+...+.|.+.+...+. ..++.++||+||||||||++|+++++++. +..++.+++.++.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLVS- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECCSSCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhHHHHh-
Confidence 45688999999988887754222 23457899999999999999999999872 56889999987643
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcCCCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLNKPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~~~~~~ 276 (520)
.+.|. ....+...|..+ ..++||||||+|.+...+. +.|+..++.......+
T Consensus 85 ---------~~~g~------~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ---------KWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ---------SSCCS------CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ---------hhhhH------HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 12222 223334444333 5789999999999966431 2234444443334578
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||+++|.++. +++++.+||.. .+.++.|+.+++.+|++.++... ..+++..++.|++.+.+++|.... .+
T Consensus 150 v~vI~atn~~~~----ld~al~rRf~~-~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~--~l 222 (322)
T 1xwi_A 150 ILVLGATNIPWV----LDSAIRRRFEK-RIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS--II 222 (322)
T ss_dssp EEEEEEESCTTT----SCHHHHHTCCE-EEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH--HH
T ss_pred EEEEEecCCccc----CCHHHHhhcCe-EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH--HH
Confidence 999999999864 45567778863 49999999999999999999875 346899999999998887775333 35
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
|+.|+.
T Consensus 223 ~~~A~~ 228 (322)
T 1xwi_A 223 VRDALM 228 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 565553
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=1.9e-19 Score=175.84 Aligned_cols=196 Identities=17% Similarity=0.242 Sum_probs=142.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQ---------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~---------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
+..+.++|.+..+++|.+++...... ..+.++||+||||||||++|+++++.+ +.+++++++..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~ 87 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSEL 87 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHH
Confidence 34566899999999999888664332 567889999999999999999999998 889999998876
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCcccccc-----------ChHHHHHHHHhcC--
Q psy17062 207 PEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNK-----------RQDVIYNILEYLN-- 271 (520)
Q Consensus 207 ~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~-----------~~~~L~~ll~~~~-- 271 (520)
.... .| .....+...|..+ ..++||||||+|.+... .+..|..+++...
T Consensus 88 ~~~~----------~~------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VKKF----------IG------EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CCCS----------TT------HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HHhc----------cc------hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 4321 11 1223333333333 57899999999999532 3456777776542
Q ss_pred CCCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCC-C
Q psy17062 272 KPKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSR-S 348 (520)
Q Consensus 272 ~~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G-~ 348 (520)
....+++||+++|..+. +++.+.+ ||.. .+.|++|+.+++.+|++.++.......+..++.++..+.++.| +
T Consensus 152 ~~~~~~~vI~ttn~~~~----l~~~l~~~~Rf~~-~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDI----LDPAILRPGRFDR-IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp CSSSSEEEEEECSCGGG----BCHHHHSTTSEEE-EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHH
T ss_pred CCCCCEEEEEeCCCchh----cCHHHcCCCcCCe-EEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHH
Confidence 23468999999998754 3455555 7753 5999999999999999999987655556678999999777655 3
Q ss_pred HHHHHHHHHhhhc
Q psy17062 349 EIFCANHYTNEKK 361 (520)
Q Consensus 349 ~r~al~~l~~a~~ 361 (520)
++. +|..|..
T Consensus 227 i~~---l~~~a~~ 236 (285)
T 3h4m_A 227 LKA---ICTEAGM 236 (285)
T ss_dssp HHH---HHHHHHH
T ss_pred HHH---HHHHHHH
Confidence 444 4555443
No 22
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=3.6e-19 Score=175.15 Aligned_cols=194 Identities=17% Similarity=0.280 Sum_probs=141.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.++|.+..++.|.+++...+ .-..+.++||+||||||||++|+++++.+ +..++.++|.++
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l-- 85 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL-- 85 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHH--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHH--
Confidence 3458899999999988876531 12466789999999999999999999988 889999998654
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------------hHHHHHHHHhcCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------------QDVIYNILEYLNK 272 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------------~~~L~~ll~~~~~ 272 (520)
...+.|... ..+...|..+ ..|+||||||+|.+...+ ...|+..++...
T Consensus 86 --------~~~~~g~~~------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~- 150 (301)
T 3cf0_A 86 --------LTMWFGESE------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150 (301)
T ss_dssp --------HHHHHTTCT------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-
T ss_pred --------HhhhcCchH------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-
Confidence 455556531 2233334333 478999999999987542 234555555332
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
...+++||++||..+.++ +.+.+ ||. ..|+|+.|+.+++.+|++.+++......+..++.++..+.+++|+
T Consensus 151 ~~~~v~vi~atn~~~~ld----~al~r~gRf~-~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~-- 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIID----PAILRPGRLD-QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA-- 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSC----GGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH--
T ss_pred CCCCEEEEEecCCccccC----hHHhcCCccc-eEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH--
Confidence 346799999999876443 44545 886 459999999999999999999876544566688899988888886
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
...++|+.|+.
T Consensus 224 dl~~l~~~a~~ 234 (301)
T 3cf0_A 224 DLTEICQRACK 234 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34456666654
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.80 E-value=4.2e-18 Score=163.98 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=132.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
..+.++|.+...+.+.+++..... ...+.++||+||||||||++|+++++++ +.++++++|..+.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEFVE 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTTSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHHHh
Confidence 345689999988888887654321 1456789999999999999999999998 88999999987643
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCcccccc------------ChHHHHHHHHhcCC--
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNK------------RQDVIYNILEYLNK-- 272 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~------------~~~~L~~ll~~~~~-- 272 (520)
.. .| .....+...|..+ ..++||||||+|.+... .+..|..+++.+..
T Consensus 78 ~~----------~~------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 VI----------GG------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp SS----------TT------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred hc----------cC------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 11 01 1222333344333 46899999999999532 34566666665422
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHcCCCCCC
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNN-CFHPD-AVQLVARLEPPTSRS 348 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~-~~~~~-~l~~la~~~~~~~G~ 348 (520)
...++++|+++|..+. +++.+.+ ||.. .++|++|+.+++.+|++.++.... ..+.+ .++.++..+.++.|
T Consensus 142 ~~~~~~vi~~tn~~~~----ld~~l~~~~R~~~-~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~- 215 (262)
T 2qz4_A 142 TTDHVIVLASTNRADI----LDGALMRPGRLDR-HVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG- 215 (262)
T ss_dssp TTCCEEEEEEESCGGG----GGSGGGSTTSCCE-EEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH-
T ss_pred CCCCEEEEecCCChhh----cCHHHhcCCcCCe-EEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH-
Confidence 3457899999998664 3455666 8863 499999999999999999998752 22333 45788888766665
Q ss_pred HHHHHHHHHhhhc
Q psy17062 349 EIFCANHYTNEKK 361 (520)
Q Consensus 349 ~r~al~~l~~a~~ 361 (520)
+....++..++.
T Consensus 216 -~~l~~l~~~a~~ 227 (262)
T 2qz4_A 216 -ADIANICNEAAL 227 (262)
T ss_dssp -HHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHH
Confidence 344456666655
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=3.4e-18 Score=171.15 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=149.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
+.++|++..++.+..++..... .....++||+||||||||++|+++++.+ +.+++.++|.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~~~------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTAAPMIEKSG------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEGGGCCSHH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecchhccchh-------
Confidence 4589999999999999987643 3456689999999999999999999987 7889999998765321
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC---------------CCCcEEEEEE
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK---------------PKSRLIILCI 282 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~---------------~~~~v~vI~~ 282 (520)
.+...+.....+.+|||||+|.+....++.|+.+++.... ...++.+|++
T Consensus 96 ---------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 96 ---------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp ---------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred ---------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 2223333445789999999999998888899998875421 0114789999
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+|.... +.+.+.+||. ..+.|++|+.+++..++...+... ..+++++++.++.. +.|++|.+.++++.+..
T Consensus 161 tn~~~~----l~~~L~~R~~-~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~---~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 161 TTRAGM----LSNPLRDRFG-MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKR---SRSTPRIALRLLKRVRD 232 (338)
T ss_dssp ESCGGG----SCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHT---TTTCHHHHHHHHHHHHH
T ss_pred CCCccc----cCHHHHhhcC-EEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HCcCHHHHHHHHHHHHH
Confidence 997542 5677889985 349999999999999999988765 45789999999995 88999999999988754
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.78 E-value=3.7e-19 Score=183.77 Aligned_cols=195 Identities=18% Similarity=0.303 Sum_probs=136.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|.++.+.++.+.+.... ....+.++||+||||||||+++++++.++ +.++++++|.++...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDFVEL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGTTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHHHHH
Confidence 3458899988888887765431 12346789999999999999999999988 889999999887531
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcC--CCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLN--KPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~--~~~ 274 (520)
+.|. ....++..|..+ ..|+||||||+|.+...++ ..+.+++..+. ...
T Consensus 89 ----------~~g~------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------FVGV------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------CTTH------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------Hhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 1121 223344455544 5799999999999976532 24555554332 124
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhh--ccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVS--SRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~--sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.+++||++||..+.++. .+. .||.. .|.|++|+.+++.+|++.+++.....++..+..++..+.++.| +..
T Consensus 153 ~~viVIaaTn~~~~Ld~----allR~gRFd~-~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sg--adL 225 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDP----ALLRPGRFDK-KIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVG--ADL 225 (476)
T ss_dssp GTEEEEEEESCGGGSCG----GGGSTTSSCE-EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH--HHH
T ss_pred CCEEEEEecCChhhhch----hhcccCccee-EeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcH--HHH
Confidence 57999999999765443 333 48863 5999999999999999999987654455558889998665554 334
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
.++|..|+.
T Consensus 226 ~~lv~~Aal 234 (476)
T 2ce7_A 226 ENLVNEAAL 234 (476)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.78 E-value=3.9e-18 Score=173.96 Aligned_cols=183 Identities=16% Similarity=0.241 Sum_probs=131.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|++..++.|..++..... ...+.++||+||||||||++|+++++.+ +.++++++|..+..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTS- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhc-
Confidence 35689999999999998865432 2346789999999999999999999988 89999999988753
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC-CCCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN-KPKS 275 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~-~~~~ 275 (520)
.+.|. ....+...|..+ ..++||||||||.|.... +..|+..++... ....
T Consensus 187 ---------~~~g~------~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 ---------KYVGE------GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred ---------cccch------HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 22222 122233333333 468999999999995432 223444454432 2356
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCC
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSR 347 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G 347 (520)
+++||+++|..+. +++.+.+||.. .|.|+.|+.+++.+||..++... ..++++.++.|+..+.++.|
T Consensus 252 ~v~vI~atn~~~~----l~~~l~~R~~~-~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 252 RVLVMGATNRPQE----LDEAVLRRFIK-RVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp CEEEEEEESCGGG----CCHHHHTTCCE-EEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCH
T ss_pred CEEEEEecCCchh----cCHHHHcCcce-EEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 7999999998653 46678889863 49999999999999999998765 56789999999999666554
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=1.1e-18 Score=172.38 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=145.3
Q ss_pred CCCchHHHHHHHHHHHHHHhh-----------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEccccCC
Q psy17062 140 SLPCREAEFQSIHRFLLSKIS-----------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALSIP 207 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~-----------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~~~ 207 (520)
.++|++...+.|.+++..... ...+.++||+||||||||++|+++++.+...... ..+++++++..+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 368999999999887765321 3456689999999999999999999998664321 3478899987764
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCcccccc---------ChHHHHHHHHhcCCCCCcEE
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK---------RQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~---------~~~~L~~ll~~~~~~~~~v~ 278 (520)
. .+.|. ....+...|..+ .++||||||+|.+... .++.|+.+++. ...++.
T Consensus 112 ~----------~~~g~------~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~---~~~~~~ 171 (309)
T 3syl_A 112 G----------QYIGH------TAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN---NRDDLV 171 (309)
T ss_dssp C----------SSTTC------HHHHHHHHHHHH-TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH---CTTTCE
T ss_pred h----------hcccc------cHHHHHHHHHhc-CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc---CCCCEE
Confidence 2 11121 122233333322 5679999999999532 23455555553 356788
Q ss_pred EEEEEcCCCCchh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcC-----CCCCCHHH
Q psy17062 279 ILCIANTMDLPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEP-----PTSRSEIF 351 (520)
Q Consensus 279 vI~~tn~~~~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~-----~~~G~~r~ 351 (520)
+|+++|....... .+.+.+.+||. ..|+|++|+.+++.+|++.++... ..+++++++.++..+. .+.|++|.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 8998886532211 23578899985 459999999999999999999865 5688999999988754 57899999
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
+.++++.+..
T Consensus 251 l~~~l~~a~~ 260 (309)
T 3syl_A 251 IRNALDRARL 260 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 28
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.7e-17 Score=154.97 Aligned_cols=188 Identities=18% Similarity=0.210 Sum_probs=143.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..++.+..++.. +...+++|+||+|||||++++.+++.+..... ...++.+++........+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~------ 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGIDVV------ 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG-GGGEEEEETTCTTCHHHH------
T ss_pred HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc-ccceEEeccccccChHHH------
Confidence 4588999999999988864 23345999999999999999999998854422 356788888765542222
Q ss_pred HHhcCCCChHHHHHHHHHHHcC----CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTR----PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~----~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
...+...... ...+.||||||+|.+....++.|..+++.. ..++.+|+++|... .+.
T Consensus 86 ------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~----~~~ 146 (226)
T 2chg_A 86 ------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNYVS----RII 146 (226)
T ss_dssp ------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGG----GSC
T ss_pred ------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCeEEEEeCChh----hcC
Confidence 1122222221 157899999999999888888888888754 44677888888653 346
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.+.+||. .+.|++++.+++.+++..++... ..+++++++.++.. +.|+++.+++.++.++.
T Consensus 147 ~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 147 EPIQSRCA--VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI---SGGDFRKAINALQGAAA 209 (226)
T ss_dssp HHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 67888986 49999999999999999988643 45789999999987 78999999999998876
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=3.1e-18 Score=164.52 Aligned_cols=194 Identities=16% Similarity=0.248 Sum_probs=136.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|.+...+.+.+.+..... ...+.+++|+||||||||++++++++.+ +.+++++++.++...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDFVEM 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSSTTS
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHHHHHH
Confidence 45688999888888776654211 1346689999999999999999999988 778999999876431
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcC--CCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLN--KPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~--~~~ 274 (520)
+.|. ....+...|..+ ..+++|||||+|.+....+ ..+..++..+. ...
T Consensus 85 ----------~~~~------~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 85 ----------FVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ----------CCCC------CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ----------hhhh------hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 1122 112233333333 4689999999999876432 34444544331 235
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCC-CHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSR-SEIF 351 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G-~~r~ 351 (520)
.++++|+++|..+.++ +++.+ ||.. .+.|+.|+.+++.+|++.+++.....++..+..++.. +.| +.+.
T Consensus 149 ~~~~vI~~tn~~~~l~----~~l~r~~rf~~-~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~---~~G~~~~d 220 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLD----PALLRPGRFDR-QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG---TPGFSGAD 220 (257)
T ss_dssp SCEEEEEEESCTTTSC----GGGGSTTSSCE-EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT---CTTCCHHH
T ss_pred CCEEEEEeeCCchhCC----HHHcCCCcCCe-EEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHH---cCCCCHHH
Confidence 6789999999987544 34444 7764 5999999999999999999987644445557778876 666 7787
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
..++|..|+.
T Consensus 221 l~~l~~~a~~ 230 (257)
T 1lv7_A 221 LANLVNEAAL 230 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788887765
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=5.6e-18 Score=168.51 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=139.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..+..+..++.. +..+..+|++||||||||++++++++.+ +..++++++.... ...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~~--~~~------ 88 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDCK--IDF------ 88 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTCC--HHH------
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEcccccC--HHH------
Confidence 5689999999999888873 3445667888889999999999999998 8899999987753 111
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCcccc-ccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLC-NKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~-~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
....+....... +.+.||||||+|.+. ...++.|+.+++.. ..++.+|+++|... .+.
T Consensus 89 -----------i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~---~~~~~iI~~~n~~~----~l~ 150 (324)
T 3u61_B 89 -----------VRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY---SSNCSIIITANNID----GII 150 (324)
T ss_dssp -----------HHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH---GGGCEEEEEESSGG----GSC
T ss_pred -----------HHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC---CCCcEEEEEeCCcc----ccC
Confidence 111122222221 478999999999998 77888899999864 34677888898765 356
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC--------CCCCH-HHHHHHHHHcCCCCCCHHHHHHHHHhhh
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN--------NCFHP-DAVQLVARLEPPTSRSEIFCANHYTNEK 360 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~--------~~~~~-~~l~~la~~~~~~~G~~r~al~~l~~a~ 360 (520)
+++.+||. .+.|++|+.+++.+|+...+... ..+++ ++++.++.. +.||+|.+++.++.++
T Consensus 151 ~~l~sR~~--~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 151 KPLQSRCR--VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK---NFPDFRKTIGELDSYS 220 (324)
T ss_dssp TTHHHHSE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHH---TCSCTTHHHHHHHHHG
T ss_pred HHHHhhCc--EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh---CCCCHHHHHHHHHHHh
Confidence 78889995 49999999998766655443321 56677 999999998 8899999999999886
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=4.1e-18 Score=175.81 Aligned_cols=186 Identities=13% Similarity=0.199 Sum_probs=137.5
Q ss_pred CCCCCchHHHH---HHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 138 PESLPCREAEF---QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 138 p~~l~gr~~ei---~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
.+.++|++..+ ..+...+.. +...++||+||||||||++|+.+++.+ +..++.+++..... ..+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~----~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~~~~--~~ir 92 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA----GHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVTSGV--KEIR 92 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH----TCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTTCCH--HHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHc----CCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEeccCCH--HHHH
Confidence 35689999888 566666654 344789999999999999999999998 88899998865431 1111
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 215 RILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
.++ ........ ...+.||||||+|.+....++.|+..++ ...+++|++++... ...+.
T Consensus 93 ~~~--------------~~a~~~~~-~~~~~iLfIDEI~~l~~~~q~~LL~~le-----~~~v~lI~att~n~--~~~l~ 150 (447)
T 3pvs_A 93 EAI--------------ERARQNRN-AGRRTILFVDEVHRFNKSQQDAFLPHIE-----DGTITFIGATTENP--SFELN 150 (447)
T ss_dssp HHH--------------HHHHHHHH-TTCCEEEEEETTTCC------CCHHHHH-----TTSCEEEEEESSCG--GGSSC
T ss_pred HHH--------------HHHHHhhh-cCCCcEEEEeChhhhCHHHHHHHHHHHh-----cCceEEEecCCCCc--ccccC
Confidence 111 11111111 2478999999999999988999999998 35688888875432 22367
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhcc
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKKS 362 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~~ 362 (520)
+.+.+||.+ +.|++++.+++..++...+... ..+++++++.|+.. +.||+|.++++|+.++..
T Consensus 151 ~aL~sR~~v--~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 151 SALLSRARV--YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHTTEEE--EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHHHHHHHHH
T ss_pred HHHhCceeE--EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHHHHHHHHh
Confidence 889999864 9999999999999999998762 45899999999998 789999999999998864
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=1.5e-17 Score=165.23 Aligned_cols=188 Identities=16% Similarity=0.222 Sum_probs=148.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
.+.++|++..+..+..++..... ...+.+++|+||+|||||++|+++++.+ +.++++++|........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~~~~~----- 79 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIEKPGD----- 79 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCCSHHH-----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccCChHH-----
Confidence 45689999999999999886543 2355789999999999999999999988 78889999987654221
Q ss_pred HHHHhcCCCChHHHHHHHHHHHcC-CCCceEEEEcCCccccccChHHHHHHHHhcCC---------------CCCcEEEE
Q psy17062 217 LELLLNVDAPPEQAKAMLERHFTR-PHGPCVLLIDELDYLCNKRQDVIYNILEYLNK---------------PKSRLIIL 280 (520)
Q Consensus 217 ~~~l~g~~~~~~~~~~~l~~~~~~-~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~---------------~~~~v~vI 280 (520)
+...+.. ...+.+|||||+|.+....++.|+.+++.... ...++.+|
T Consensus 80 -----------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 -----------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 2223333 35788999999999998888889988875420 01357899
Q ss_pred EEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 281 ~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
+++|.... +.+.+.+||. ..+.|++|+.+++.+++..++... ..+++++++.++.. +.|++|.+.+++..+
T Consensus 143 ~~t~~~~~----~~~~l~~R~~-~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGL----ITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR---SRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSS----CSCSTTTTCS-CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH---SCSCHHHHHHHHHHH
T ss_pred EeCCCccc----CCHHHHhccc-EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHH
Confidence 99998753 4456778984 349999999999999999998765 56889999999998 679999999999887
Q ss_pred hc
Q psy17062 360 KK 361 (520)
Q Consensus 360 ~~ 361 (520)
..
T Consensus 215 ~~ 216 (324)
T 1hqc_A 215 RD 216 (324)
T ss_dssp TT
T ss_pred HH
Confidence 65
No 33
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.77 E-value=1.8e-19 Score=195.83 Aligned_cols=194 Identities=19% Similarity=0.316 Sum_probs=121.1
Q ss_pred CCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
+.+.|.++..+.|.+.+.... ...++.++|||||||||||++|+++|.++ +.+++.+++.++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l--- 547 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL--- 547 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH---
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh---
Confidence 345566655555555443221 12456789999999999999999999999 999999988764
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcC--CCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLN--KPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~--~~~ 274 (520)
++++.|+ ....++.+|..+ ..|+||||||+|.+...+. .++.++|.++. ...
T Consensus 548 -------~s~~vGe------se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 548 -------LTMWFGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -------HTTTCSS------CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -------hccccch------HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 5667676 566788888777 6799999999999986531 24555554432 235
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.+++||++||.++.++. ++.+ ||.. .|+|+.|+.+++.+||+.++++.....+..++.||+.+.+++|....+
T Consensus 615 ~~V~vi~aTN~p~~lD~----AllRpgRfd~-~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~ 689 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDP----AILRPGRLDQ-LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp SSEEEECC-CCSSSSCH----HHHSTTTSCC-EEEC-----CHHHHTTTTTSSCC--CCC----------------CHHH
T ss_pred CCEEEEEeCCCchhCCH----hHcCCCcceE-EEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH
Confidence 67999999999986654 4444 8874 599999999999999999998876666778999999999998865443
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
+|+.|+.
T Consensus 690 --l~~~A~~ 696 (806)
T 3cf2_A 690 --ICQRACK 696 (806)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5555543
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=1.5e-17 Score=164.19 Aligned_cols=201 Identities=13% Similarity=0.187 Sum_probs=143.0
Q ss_pred CCCchHHHHHHHHHHHHHHh----------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 140 SLPCREAEFQSIHRFLLSKI----------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~----------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.++|++..++.+...+.... ....+.++||+||||||||++|+++++.+ +.++++++|..+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTEV 89 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSSC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEcchhcccC
Confidence 47899999999998887621 12456789999999999999999999998 788999999876531
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-------CCceEEEEcCCccccccC------------hHHHHHHHHhc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP-------HGPCVLLIDELDYLCNKR------------QDVIYNILEYL 270 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-------~~~~vLiiDEid~l~~~~------------~~~L~~ll~~~ 270 (520)
.+.|.. ....+...+... ..+.||||||+|.+.... ++.|+.+++..
T Consensus 90 ---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 90 ---------GYVGKE-----VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp ---------CSGGGS-----TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC
T ss_pred ---------CccCcc-----HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC
Confidence 011110 001111222111 247899999999998876 77888888843
Q ss_pred C-------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHH-----------HhCC---CC
Q psy17062 271 N-------KPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNR-----------LKNN---NC 329 (520)
Q Consensus 271 ~-------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~-----------l~~~---~~ 329 (520)
. ....++++|++++........+.+++.+||. ..|+|++|+.+++.+|++.+ +... ..
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 234 (310)
T 1ofh_A 156 TVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP-IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA 234 (310)
T ss_dssp EEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEE
T ss_pred eEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC-ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeec
Confidence 1 0134678888876432222346788999997 35999999999999999831 1111 35
Q ss_pred CCHHHHHHHHHHcCC-----CCCCHHHHHHHHHhhhc
Q psy17062 330 FHPDAVQLVARLEPP-----TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 330 ~~~~~l~~la~~~~~-----~~G~~r~al~~l~~a~~ 361 (520)
+++++++.|++.... ..|++|.+.++++.+..
T Consensus 235 ~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 235 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred cCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 899999999997422 16999999999998763
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=2.4e-18 Score=174.22 Aligned_cols=234 Identities=15% Similarity=0.179 Sum_probs=153.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhcC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC----Ch
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQS-TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP----EP 209 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~~-~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~----~~ 209 (520)
....+.++|++..+..+..++.....+. ++.++||+||||||||++|+++++.+.. ..+++.++|..+. ..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEEEGGGGSCSSSCH
T ss_pred CcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccccchhhhhcccch
Confidence 3445678999999888766665543333 3468999999999999999999999832 3577788876532 23
Q ss_pred HHHHHHHHHHHhcCCC----------------------------C-----hHHHHHHHHHHHcCC-------CCceEEEE
Q psy17062 210 KRAYSRILELLLNVDA----------------------------P-----PEQAKAMLERHFTRP-------HGPCVLLI 249 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~----------------------------~-----~~~~~~~l~~~~~~~-------~~~~vLii 249 (520)
...+...+....|... . .......+....... ..|+||||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333333222100 0 111222222221111 22689999
Q ss_pred cCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCC-------CCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHH
Q psy17062 250 DELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM-------DLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQN 322 (520)
Q Consensus 250 DEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~-------~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~ 322 (520)
||+|.+....++.|+.+++.. ..+++++++.+.. ......+.+.+.+||.. +.|++|+.+++.+|++.
T Consensus 196 DEi~~l~~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~--i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI--VSTTPYSEKDTKQILRI 270 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE--EEECCCCHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE--EEecCCCHHHHHHHHHH
Confidence 999999988778888777643 3455555443211 11122356789999965 99999999999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHcCCCC-CCHHHHHHHHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 323 RLKNN-NCFHPDAVQLVARLEPPTS-RSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 323 ~l~~~-~~~~~~~l~~la~~~~~~~-G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
++... ..+++++++.|++. .. |++|.++++|+.++.. +...+...++.+++..+.
T Consensus 271 ~~~~~~~~~~~~~l~~l~~~---~~~G~~r~~~~ll~~a~~~--------A~~~~~~~It~~~v~~a~ 327 (368)
T 3uk6_A 271 RCEEEDVEMSEDAYTVLTRI---GLETSLRYAIQLITAASLV--------CRKRKGTEVQVDDIKRVY 327 (368)
T ss_dssp HHHHTTCCBCHHHHHHHHHH---HHHSCHHHHHHHHHHHHHH--------HHHTTCSSBCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHH--------HHHhCCCCCCHHHHHHHH
Confidence 88764 66899999999998 55 9999999999998762 323334455555555443
No 36
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=4.7e-18 Score=176.99 Aligned_cols=193 Identities=19% Similarity=0.259 Sum_probs=143.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh---------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~---------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.++|.+.++++|.+++..... ...+.++||+||||||||++|+++++++ +.++++++|..+.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~~l~- 275 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM- 275 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEchHhh-
Confidence 35689999999999998875321 3567789999999999999999999988 8899999987653
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcCCCCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLNKPKS 275 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~~~~~ 275 (520)
..+.| .....+...|..+ ..+++|||||||.+...++ ..|+.+|+... ...
T Consensus 276 ---------~~~~g------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~ 339 (489)
T 3hu3_A 276 ---------SKLAG------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (489)
T ss_dssp ---------TSCTT------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTS
T ss_pred ---------hhhcc------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCC
Confidence 22222 2444555566555 6789999999999987532 34666666443 456
Q ss_pred cEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 276 RLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 276 ~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
+++||++||..+.+ ++.+.+ ||.. .|.|+.|+.+++.+||+.+++......+..++.++..+.++.|.. ..
T Consensus 340 ~v~vIaaTn~~~~L----d~al~r~gRf~~-~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~d--L~ 412 (489)
T 3hu3_A 340 HVIVMAATNRPNSI----DPALRRFGRFDR-EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD--LA 412 (489)
T ss_dssp CEEEEEEESCGGGB----CGGGGSTTSSCE-EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHH--HH
T ss_pred ceEEEEecCCcccc----CHHHhCCCcCce-EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHH--HH
Confidence 89999999987643 445555 6753 599999999999999999998765556667889999877766633 23
Q ss_pred HHHHhhh
Q psy17062 354 NHYTNEK 360 (520)
Q Consensus 354 ~~l~~a~ 360 (520)
.+|..|+
T Consensus 413 ~L~~~A~ 419 (489)
T 3hu3_A 413 ALCSEAA 419 (489)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3555554
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=169.59 Aligned_cols=193 Identities=17% Similarity=0.294 Sum_probs=139.1
Q ss_pred CCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPK 210 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~ 210 (520)
+.++|++..++.|.+.+...+ ....+.++||+||||||||++|+++++.+ +.++++++|..+...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhhcc-
Confidence 468999999999999886532 12457789999999999999999999988 889999999876432
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC-CCCCc
Q psy17062 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN-KPKSR 276 (520)
Q Consensus 211 ~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~-~~~~~ 276 (520)
+.| .....+...|..+ ..++||||||+|.|...+ ++.|+..++... ....+
T Consensus 157 ---------~~g------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 ---------WVG------EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ---------STT------HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ---------ccc------hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 111 1222333333333 578999999999997643 123444444322 23568
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||+++|..+. +++.+.+||. ..+.++.|+.+++.+|+..++... ..++++.++.|++.+.++.|.... .+
T Consensus 222 v~vI~atn~~~~----l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~--~l 294 (357)
T 3d8b_A 222 ILVVGATNRPQE----IDEAARRRLV-KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT--QL 294 (357)
T ss_dssp EEEEEEESCGGG----BCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH--HH
T ss_pred EEEEEecCChhh----CCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH--HH
Confidence 999999998653 4567778986 348999999999999999999765 457899999999998776653333 35
Q ss_pred HHhhh
Q psy17062 356 YTNEK 360 (520)
Q Consensus 356 l~~a~ 360 (520)
|..+.
T Consensus 295 ~~~a~ 299 (357)
T 3d8b_A 295 CREAS 299 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.75 E-value=3.6e-18 Score=176.74 Aligned_cols=196 Identities=16% Similarity=0.252 Sum_probs=136.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|.+...+.|.+.+...+. ..++.++||+||||||||++|+++++++. +.+++.+++.++.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~~l~-- 205 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLV-- 205 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC-----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHHHHH--
Confidence 45689999999998887743211 23567899999999999999999999861 5688999998763
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------hHHHHHHHHhcC---CCCCc
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------QDVIYNILEYLN---KPKSR 276 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~---~~~~~ 276 (520)
..+.|... ..+...|..+ ..++||||||+|.+...+ ..++..++..+. ....+
T Consensus 206 --------~~~~g~~~------~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 206 --------SKWLGESE------KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------CC------CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred --------hhhcchHH------HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 23333321 1122223222 478999999999996542 234455555442 23578
Q ss_pred EEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHcCCCCCCHHHHHHH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN-CFHPDAVQLVARLEPPTSRSEIFCANH 355 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~-~~~~~~l~~la~~~~~~~G~~r~al~~ 355 (520)
++||++||.++. +++.+.+||.. .+.++.|+.+++..|++.++.... .+++..++.|+..+.+++|.... .+
T Consensus 272 v~vI~atn~~~~----ld~al~rRf~~-~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~--~l 344 (444)
T 2zan_A 272 ILVLGATNIPWV----LDSAIRRRFEK-RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS--II 344 (444)
T ss_dssp CEEEEEESCGGG----SCHHHHTTCCE-EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH--HH
T ss_pred EEEEecCCCccc----cCHHHHhhcce-EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH--HH
Confidence 999999998753 45677889963 499999999999999999998753 46899999999998887774333 35
Q ss_pred HHhhhc
Q psy17062 356 YTNEKK 361 (520)
Q Consensus 356 l~~a~~ 361 (520)
|+.|+.
T Consensus 345 ~~~a~~ 350 (444)
T 2zan_A 345 VRDALM 350 (444)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555543
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=3.2e-17 Score=160.90 Aligned_cols=194 Identities=16% Similarity=0.272 Sum_probs=136.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 138 PESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+.++|++..++.+.+.+..... ..++.++||+||||||||++|+++++.+ +.+++.++|..+...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFLNISAASLTSK 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEEEEESTTTSSS
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEeeHHHHhhc
Confidence 35689999999999988765321 2356789999999999999999999988 889999999876421
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccCh-----------HHHHHHHHhcCC--CC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQ-----------DVIYNILEYLNK--PK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~-----------~~L~~ll~~~~~--~~ 274 (520)
+.|. ....+...|..+ ..++||||||+|.+....+ ..|+..++.... ..
T Consensus 94 ----------~~~~------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 94 ----------YVGD------GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp ----------SCSC------HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred ----------ccch------HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 1111 122222233222 5789999999999976532 234444554321 12
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
.++++|+++|..+. +++.+.+||. ..+.++.|+.+++..|++.++... ..+++++++.++..+.++.|....
T Consensus 158 ~~v~vi~~tn~~~~----l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~-- 230 (297)
T 3b9p_A 158 DRIVVLAATNRPQE----LDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT-- 230 (297)
T ss_dssp -CEEEEEEESCGGG----BCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH--
T ss_pred CcEEEEeecCChhh----CCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH--
Confidence 56899999998763 4556777886 459999999999999999998765 457899999999996665552221
Q ss_pred HHHHhhh
Q psy17062 354 NHYTNEK 360 (520)
Q Consensus 354 ~~l~~a~ 360 (520)
.+|+.++
T Consensus 231 ~l~~~a~ 237 (297)
T 3b9p_A 231 ALAKDAA 237 (297)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3555554
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.7e-17 Score=175.28 Aligned_cols=202 Identities=14% Similarity=0.152 Sum_probs=140.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-------------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-------------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
+.++|++..++.+..++...... +...++||+||||||||++|+++++++ +..+++++|.+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l------~~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT------TCEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeCCC
Confidence 46899999999999999874322 145789999999999999999999998 89999999998
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccCh---HHHHHHHHhcCCCCCcEEEEEE
Q psy17062 206 IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQ---DVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 206 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~---~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
......+... +....+.. ............+.....+.||||||+|.+....+ ..|..+++. ...+ +|++
T Consensus 113 ~~~~~~~~~~-i~~~~~~~-~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~--iIli 185 (516)
T 1sxj_A 113 VRSKTLLNAG-VKNALDNM-SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTP--LILI 185 (516)
T ss_dssp CCCHHHHHHT-GGGGTTBC-CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSC--EEEE
T ss_pred cchHHHHHHH-HHHHhccc-cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCC--EEEE
Confidence 8764422111 11111100 00000000000111225789999999999988776 455566553 2333 5555
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+|...... .+.+.+|+. .+.|++|+.+++.++|...+... ..+++++++.|++. +.||+|.++++++.++.
T Consensus 186 ~~~~~~~~---l~~l~~r~~--~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~---s~GdiR~~i~~L~~~~~ 257 (516)
T 1sxj_A 186 CNERNLPK---MRPFDRVCL--DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT---TRGDIRQVINLLSTIST 257 (516)
T ss_dssp ESCTTSST---TGGGTTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH---TTTCHHHHHHHHTHHHH
T ss_pred EcCCCCcc---chhhHhceE--EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHh
Confidence 56543221 235667764 49999999999999999887643 56889999999998 78999999999987754
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=3.1e-17 Score=158.95 Aligned_cols=196 Identities=10% Similarity=0.137 Sum_probs=134.9
Q ss_pred CCCCCCCchHHHHHHHHHH---HHHHhh---cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 136 RVPESLPCREAEFQSIHRF---LLSKIS---QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~---L~~~~~---~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
.+...++|++..++.+... +...+. ...+.++||+||||||||++|+++++.+ +.+++.++|.+..
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~-- 101 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKM-- 101 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGC--
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHh--
Confidence 3445678888888777774 333332 4566789999999999999999999987 8889999886521
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccc------cChHHHHHHH----HhcCCCCCcE
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCN------KRQDVIYNIL----EYLNKPKSRL 277 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~------~~~~~L~~ll----~~~~~~~~~v 277 (520)
.|. ........+...|..+ ..+.+|||||+|.+.. ..+..+.+.| +.......++
T Consensus 102 -----------~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 102 -----------IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp -----------TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred -----------cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 121 1111222333333332 4689999999999833 2334444433 3222245678
Q ss_pred EEEEEEcCCCCchhhhhh-hhhccCCcceEEeCCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCC--CCCHHHHH
Q psy17062 278 IILCIANTMDLPERTLKG-KVSSRMGLTRLMFKPYDH-HQLQEIVQNRLKNNNCFHPDAVQLVARLEPPT--SRSEIFCA 353 (520)
Q Consensus 278 ~vI~~tn~~~~~~~~l~~-~l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~--~G~~r~al 353 (520)
++|+++|..+.+ .. .+.+||.. .|.||+++. +++..++... ..++++.++.+++.+.++ .|++|.++
T Consensus 169 ~ii~ttn~~~~l----~~~~l~~rf~~-~i~~p~l~~r~~i~~i~~~~----~~~~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 169 LIIGTTSRKDVL----QEMEMLNAFST-TIHVPNIATGEQLLEALELL----GNFKDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp EEEEEESCHHHH----HHTTCTTTSSE-EEECCCEEEHHHHHHHHHHH----TCSCHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred EEEEecCChhhc----chhhhhcccce-EEcCCCccHHHHHHHHHHhc----CCCCHHHHHHHHHHhcCCCccccHHHHH
Confidence 899999986533 33 46678754 489999987 7777777653 356899999999997764 66999999
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
++++.+..
T Consensus 240 ~~l~~a~~ 247 (272)
T 1d2n_A 240 MLIEMSLQ 247 (272)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999876
No 42
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.73 E-value=1.1e-17 Score=173.71 Aligned_cols=250 Identities=16% Similarity=0.226 Sum_probs=159.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhh--------cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP 207 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~--------~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~ 207 (520)
...+.++|.++...++.+.+..... ...+.+++|+||||||||+++++++..+ +.+++++++.++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~~~ 101 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFV 101 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGGGT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhHHH
Confidence 3455688998888887776654311 1235679999999999999999999988 7889999998764
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--C
Q psy17062 208 EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--K 272 (520)
Q Consensus 208 ~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~ 272 (520)
.. +.| .....+...|..+ ..|+++||||+|.+.... ...+.+++..+. .
T Consensus 102 ~~----------~~g------~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 102 EM----------FVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp SS----------CTT------HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred Hh----------hhh------hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 31 111 1344566777776 468999999999986542 235666665543 2
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
....+++|+++|.++.+ ++++.+ ||.. .|.|+.|+.+++.+||+.+++.....++..+..++..+.++.| +
T Consensus 166 ~~~~viviAatn~p~~L----D~aLlr~gRfdr-~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~g--a 238 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDIL----DPALLRPGRFDR-QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG--A 238 (499)
T ss_dssp SSCCCEEEECCSCGGGS----CTTTSSTTSSCC-EEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCH--H
T ss_pred cCccEEEEEecCChhhc----Ccccccccccce-EEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCH--H
Confidence 34567889999987653 445555 6653 5999999999999999988876544445568888888555443 4
Q ss_pred HHHHHHHhhhccCCCCceecccccchhhhhccccccccccCCCcccccccccccCCcccccCCC
Q psy17062 351 FCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKLDTAPVENLRPRSLKSTKKSQHATPSS 414 (520)
Q Consensus 351 ~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (520)
.+.++|.+|+..+...........+.....+.++..................++|+.+++....
T Consensus 239 dL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~ 302 (499)
T 2dhr_A 239 DLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAH 302 (499)
T ss_dssp HHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHh
Confidence 4455666665432221111122233333333333333222233333344556777777665443
No 43
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.73 E-value=1.5e-19 Score=174.97 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=130.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
..+.++|.+..++.+.+.+.... ....+.++||+||||||||++|+++++.+ +.+++.++|..+.+
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------HVPFFSMGGSSFIE 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH------TCCCCCCCSCTTTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEechHHHHH
Confidence 34568888887777777665321 12345679999999999999999999998 77888888877642
Q ss_pred hHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHcCCCCceEEEEcCCccccccCh------------HHHHHHH---HhcCC
Q psy17062 209 PKRAYSRILELLLNVDAP-PEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQ------------DVIYNIL---EYLNK 272 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~-~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~------------~~L~~ll---~~~~~ 272 (520)
. +.|.... ....+..... ..++||||||+|.+...+. ..+..++ +....
T Consensus 83 ~----------~~~~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 M----------FVGLGASRVRDLFETAKK-----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp S----------CSSSCSSSSSTTHHHHHH-----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred h----------hcchHHHHHHHHHHHHHh-----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 1 1222110 0011111111 3689999999999976431 1233333 33322
Q ss_pred CCCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 273 PKSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
...+++||+++|..+.++ +.+.+ ||.. .+.|++|+.+++.+||+.+++.....++..++.++..+.++.| +
T Consensus 148 ~~~~v~vi~ttn~~~~ld----~~l~r~~Rf~~-~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g--~ 220 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILD----PALMRPGRFDR-QVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAG--A 220 (268)
T ss_dssp SCSCCEEEECBSCCTTSC----GGGGSSSSSCC-CCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCH--H
T ss_pred CCCCEEEEEecCCchhcC----HhHcCCCCCCe-EEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCH--H
Confidence 345689999999887544 34444 7753 4999999999999999999987644455567778887777666 5
Q ss_pred HHHHHHHhhhc
Q psy17062 351 FCANHYTNEKK 361 (520)
Q Consensus 351 ~al~~l~~a~~ 361 (520)
.+.+++..|+.
T Consensus 221 dl~~l~~~a~~ 231 (268)
T 2r62_A 221 DLANIINEAAL 231 (268)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55567777765
No 44
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.5e-16 Score=159.96 Aligned_cols=203 Identities=14% Similarity=0.134 Sum_probs=141.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..++.+..++. .+...+++|+||||||||++++++++.+.........++.+++.+..... .+...+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 111 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLK----SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKVK 111 (353)
T ss_dssp TTCCSCCTTHHHHHHHTT----CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHHH
T ss_pred HHhhCCHHHHHHHHHHHh----cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHHH
Confidence 568899988887777664 34445599999999999999999999986421114567888887754322 1111111
Q ss_pred HHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVS 298 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~ 298 (520)
.+......... .. .........+.||||||+|.+....++.|+.+++... ....+|+++|... .+.+++.
T Consensus 112 ~~~~~~~~~~~--~~-~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~---~~~~~il~~~~~~----~l~~~l~ 181 (353)
T 1sxj_D 112 NFARLTVSKPS--KH-DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS---GVTRFCLICNYVT----RIIDPLA 181 (353)
T ss_dssp HHHHSCCCCCC--TT-HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TTEEEEEEESCGG----GSCHHHH
T ss_pred HHhhhcccccc--hh-hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC---CCceEEEEeCchh----hCcchhh
Confidence 11100000000 00 0001112456899999999999888889999998653 3456667777644 2567888
Q ss_pred ccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 299 SRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 299 sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+||. .+.|++++.+++..++..++... ..+++++++.|+.. ..|++|.++++++.++.
T Consensus 182 sR~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 182 SQCS--KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDI---SAGDLRRGITLLQSASK 240 (353)
T ss_dssp HHSE--EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH---TSSCHHHHHHHHHHTHH
T ss_pred ccCc--eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 9985 49999999999999999988754 56899999999998 67999999999988765
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=3.7e-16 Score=147.86 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=134.5
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++||+.+++.+..++.. ...+..++|+||+|+|||++++.+++.+..... .+...|..+.+ ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG----ITATPCGVCDN----CREIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC----SCSSCCSCSHH----HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC----CCCCCCcccHH----HHHHhc
Confidence 4589999999999998865 233457999999999999999999998854211 11111111100 000000
Q ss_pred H----HhcCCCChHHHHHHHHHHHcCC------CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCC
Q psy17062 219 L----LLNVDAPPEQAKAMLERHFTRP------HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288 (520)
Q Consensus 219 ~----l~g~~~~~~~~~~~l~~~~~~~------~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~ 288 (520)
. +.............+...+... ..+.+|||||+|.+....++.|..+++.. ..++.+|++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~t~~~~- 167 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQ- 167 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC---CTTEEEEEEESCGG-
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC---CCceEEEEEeCChH-
Confidence 0 0000000000111222233222 46799999999999877777787777633 45788888888654
Q ss_pred chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 289 ~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+...+.+|+ ..+.|++++.+++.+++..++... ..+++++++.+++. +.|+++.+.++++.+..
T Consensus 168 ---~~~~~l~~r~--~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 168 ---KLPVTILSRC--LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA---AEGSLRDALSLTDQAIA 233 (250)
T ss_dssp ---GSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHT
T ss_pred ---hCCHHHHHHh--hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 2455677886 449999999999999999988654 56789999999998 68899999999998865
No 46
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.5e-16 Score=158.11 Aligned_cols=188 Identities=15% Similarity=0.234 Sum_probs=140.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..++.+..++.. +...+++|+||+|+|||++++.+++.+..... ...++++++.+..... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~------ 92 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGENW-RHNFLELNASDERGIN-V------ 92 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-HHHEEEEETTCHHHHH-T------
T ss_pred HHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCceEEeeccccCchH-H------
Confidence 4689999999999888765 34456999999999999999999999854311 2457778775431100 0
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
....+....... ..+.||||||+|.+....++.|..+++.. ...+.+|+++|... .+.
T Consensus 93 -----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~~~----~l~ 154 (327)
T 1iqp_A 93 -----------IREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNYSS----KII 154 (327)
T ss_dssp -----------THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGG----GSC
T ss_pred -----------HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCCcc----ccC
Confidence 111111111111 46889999999999888888899988864 34677888887654 256
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.+.+||. .+.|++++.+++.+++...+... ..+++++++.|+.. +.|++|.+++.++.+..
T Consensus 155 ~~l~sr~~--~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 155 EPIQSRCA--IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYI---AEGDMRRAINILQAAAA 217 (327)
T ss_dssp HHHHHTEE--EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHH---HTTCHHHHHHHHHHHHT
T ss_pred HHHHhhCc--EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---CCCCHHHHHHHHHHHHh
Confidence 67888986 49999999999999999988765 45899999999998 68999999999987764
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.70 E-value=9.5e-17 Score=159.62 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=135.5
Q ss_pred ccCCCCCCCCC-ch--HHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 132 LHLSRVPESLP-CR--EAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 132 l~~~~~p~~l~-gr--~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
+...+.++.++ |. ...+..+..++.. ....+.+++|+||||||||++++++++.+... +..+++++|..+
T Consensus 4 l~~~~~f~~fv~g~~~~~a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~-- 76 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDF-- 76 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH--
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHH--
Confidence 44456666665 43 3333333333332 11245789999999999999999999998765 577889988654
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccc--cChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCN--KRQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~--~~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
...+...+... ....+...+ ..+.+|||||+|.+.. ..++.|+.+++.... ....+|+++++..
T Consensus 77 ----~~~~~~~~~~~------~~~~~~~~~---~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~ 142 (324)
T 1l8q_A 77 ----AQAMVEHLKKG------TINEFRNMY---KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHP 142 (324)
T ss_dssp ----HHHHHHHHHHT------CHHHHHHHH---HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCG
T ss_pred ----HHHHHHHHHcC------cHHHHHHHh---cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCCh
Confidence 12222222111 111122222 2578999999999986 456677777765421 2234444444333
Q ss_pred CCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 287 DLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 287 ~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.... .+.+++.+||.. ..+.|++ +.+++.+|+..++... ..++++++++|+.. . |++|.+.+.+..+..
T Consensus 143 ~~l~-~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~---~-g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 143 QKLD-GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLEN---T-KNVREIEGKIKLIKL 213 (324)
T ss_dssp GGCT-TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH---C-SSHHHHHHHHHHHHH
T ss_pred HHHH-HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---C-CCHHHHHHHHHHHHH
Confidence 3222 357788899842 3499999 9999999999998754 67899999999998 5 999999999888766
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.70 E-value=7.4e-17 Score=152.83 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~ 225 (520)
..+..+..++ ....+.+++|+||+|||||++++.+++.+... +..++++++..+... +
T Consensus 38 ~~~~~l~~~~----~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~----------~----- 95 (242)
T 3bos_A 38 ELIGALKSAA----SGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI----------S----- 95 (242)
T ss_dssp HHHHHHHHHH----HTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS----------C-----
T ss_pred HHHHHHHHHH----hCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH----------H-----
Confidence 4444444444 33466889999999999999999999998765 567888888764310 0
Q ss_pred ChHHHHHHHHHHHcCCCCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCCC-CchhhhhhhhhccCC
Q psy17062 226 PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVSSRMG 302 (520)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~sR~~ 302 (520)
...+.....+.+|||||++.+.... ++.|+.+++.... ...+.+|++++... ... .+.+.+.+||.
T Consensus 96 ---------~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~-~~~~~l~~r~~ 164 (242)
T 3bos_A 96 ---------TALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAG-FVLPDLVSRMH 164 (242)
T ss_dssp ---------GGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTT-CCCHHHHHHHH
T ss_pred ---------HHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHH-HhhhhhhhHhh
Confidence 0111112467899999999998766 7778888765431 22333555555432 222 23467788872
Q ss_pred -cceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 303 -LTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 303 -~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
...+.|++|+.+++.+++..++... ..+++++++.++.. +.|++|.+.++++.+..
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNR---MARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHH---TTTCHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHH
Confidence 1349999999999999999998754 56899999999998 78999999999988765
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=1.1e-16 Score=158.06 Aligned_cols=213 Identities=12% Similarity=0.156 Sum_probs=150.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~ 213 (520)
..++|++..++.+...+.....+ .+..+++|+||||||||++|+++++.+... +.++++++|..+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~-- 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHA-- 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTH--
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeeccccccccc--
Confidence 35779999999999999886432 223579999999999999999999998654 45688999988765432
Q ss_pred HHHHHHHhcCCCChHHHH--HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCC--------CCcEEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQAK--AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKP--------KSRLIILCIA 283 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~--~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~--------~~~v~vI~~t 283 (520)
...+.|......... ..+...+.. ..+.||||||+|.+....++.|+.+++..... ..++++|+++
T Consensus 92 ---~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 92 ---VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp ---HHHHHCCCTTSTTTTTCCHHHHHHHH-CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred ---HHHhcCCCCccccccccchHHHHHHh-CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 233333321110000 112222221 25689999999999998899999999854211 1367799999
Q ss_pred cCC---------------CCc-------hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCC
Q psy17062 284 NTM---------------DLP-------ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFH 331 (520)
Q Consensus 284 n~~---------------~~~-------~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~ 331 (520)
|.. ++. ...+.+.|.+||.. .+.|+||+.+++..|+...+... ..++
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~-~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 246 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDE-IVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELT 246 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSE-EEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEEC
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCe-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 972 110 12356778899964 48999999999999999877652 4589
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 332 PDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 332 ~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+++++.|+.......|++|.+.++++.+..
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 999999999743337888888888887654
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.69 E-value=7.3e-17 Score=167.80 Aligned_cols=128 Identities=14% Similarity=0.222 Sum_probs=95.1
Q ss_pred ceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC-------CC-Cc-hhhhhhhhhccCCcceEEeCCCCHH
Q psy17062 244 PCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT-------MD-LP-ERTLKGKVSSRMGLTRLMFKPYDHH 314 (520)
Q Consensus 244 ~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~-------~~-~~-~~~l~~~l~sR~~~~~i~~~~~~~~ 314 (520)
+.|+||||+|.|....++.|+..++.. ..++ +|.++|. .+ .. ...+.+.+.+||.. ++|++|+.+
T Consensus 296 ~~VliIDEa~~l~~~a~~aLlk~lEe~---~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~--~~~~~~~~~ 369 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIECFTYLHRALESS---IAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI--IRTMLYTPQ 369 (456)
T ss_dssp ECEEEEESGGGCBHHHHHHHHHHTTST---TCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE--EECCCCCHH
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhcc---CCCE-EEEecCCccccccccccccccccCChhHHhhcce--eeCCCCCHH
Confidence 369999999999988888888888754 3344 4544543 21 11 12367789999976 899999999
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCC-CCCHHHHHHHHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 315 QLQEIVQNRLKNN-NCFHPDAVQLVARLEPPT-SRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 315 ~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~-~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
++.++|+.++... ..+++++++.|+.. . .|++|.|+.+++.+.. .+...+...++.++|..+.
T Consensus 370 e~~~iL~~~~~~~~~~~~~~~~~~i~~~---a~~g~~r~a~~ll~~a~~--------~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 370 EMKQIIKIRAQTEGINISEEALNHLGEI---GTKTTLRYSVQLLTPANL--------LAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHH---HHHSCHHHHHHTHHHHHH--------HHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHH---ccCCCHHHHHHHHHHHHH--------HHhhcCCCccCHHHHHHHH
Confidence 9999999988643 56899999999997 4 6899999999998865 2333444566666665554
No 51
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=3e-16 Score=155.63 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=140.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..++.+..++.. +...+++|+||+|+|||++++.+++.+..... ...++++++.+..... .+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~i~---- 90 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-ADGVLELNASDDRGID-VVR---- 90 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-HHHEEEECTTSCCSHH-HHH----
T ss_pred HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCCEEEecCccccChH-HHH----
Confidence 4588999999998888753 33344999999999999999999999854311 3567888887653311 111
Q ss_pred HHhcCCCChHHHHHHHHHHHc---C--CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFT---R--PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTL 293 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~---~--~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l 293 (520)
+.+..... . ...+.||||||+|.+....++.|..+++.. ...+.+|+++|... .+
T Consensus 91 -------------~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~~~~~----~l 150 (323)
T 1sxj_B 91 -------------NQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY---SNSTRFAFACNQSN----KI 150 (323)
T ss_dssp -------------THHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTEEEEEEESCGG----GS
T ss_pred -------------HHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc---CCCceEEEEeCChh----hc
Confidence 11222220 1 134889999999999888788888888754 35677888887643 35
Q ss_pred hhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 294 KGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 294 ~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+.+||. .+.|++++.+++.+++..++... ..+++++++.++.. +.|+++.+++.++.++.
T Consensus 151 ~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 151 IEPLQSQCA--ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFT---AEGDMRQAINNLQSTVA 214 (323)
T ss_dssp CHHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred hhHHHhhce--EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 678889986 49999999999999999987643 46789999999998 68999999999987753
No 52
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=1.4e-16 Score=157.79 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=138.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
+.++|++..++.+..++.. +...+++|+||+|||||++++.+++.+..... ...++++++........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGIDV------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT----TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTCTTT-------
T ss_pred HHHhCCHHHHHHHHHHHhC----CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccChHH-------
Confidence 3588999998888777643 34445999999999999999999998743211 24567888876432100
Q ss_pred HHhcCCCChHHHHHHHHHHHcC----CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhh
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTR----PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLK 294 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~----~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~ 294 (520)
....+...... ...+.||||||+|.+....++.|..+++. ...++.+|+++|... .+.
T Consensus 85 -----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~~~i~~~~~~~----~l~ 146 (319)
T 2chq_A 85 -----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSCRFILSCNYVS----RII 146 (319)
T ss_dssp -----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS---SSSSEEEEEEESCGG----GSC
T ss_pred -----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh---cCCCCeEEEEeCChh----hcc
Confidence 11111111111 14689999999999987666666666653 346788888888654 356
Q ss_pred hhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 295 GKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 295 ~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+.+.+||. .+.|++++.+++.+++..++... ..+++++++.++.. +.|++|.+++.++.++.
T Consensus 147 ~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~---~~G~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 147 EPIQSRCA--VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI---SGGDFRKAINALQGAAA 209 (319)
T ss_dssp HHHHTTCE--EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT---TTTCHHHHHHHHHHHHH
T ss_pred hHHHhhCe--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 78889985 49999999999999999998765 56899999999986 78999999999988765
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.67 E-value=3.2e-16 Score=151.16 Aligned_cols=212 Identities=14% Similarity=0.125 Sum_probs=141.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i 216 (520)
..+.++|++..+.++.+.+..... ...++||+|++|||||++|+++++.+... +.++++++|..+... . +
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~~~~--~---~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALNEN--L---L 73 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGSCHH--H---H
T ss_pred ccccceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCCChh--H---H
Confidence 345688999999999988887543 34679999999999999999999876432 468999999987521 1 1
Q ss_pred HHHHhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC
Q psy17062 217 LELLLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMD 287 (520)
Q Consensus 217 ~~~l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~ 287 (520)
...+.|..... ..........+.. ..+.+|||||+|.+....+..|+.+++... ....++.+|+++|...
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~-a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFER-ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp HHHHHCCC---------CCCCHHHH-TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCH
T ss_pred HHHhcCCcccccccccccccchhhh-cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCH
Confidence 23344432100 0000000011111 246799999999999988899999998531 1124678899998741
Q ss_pred C--c-hhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC---------CCCCHHHHHHHHHHcCCCCCCHHHHH
Q psy17062 288 L--P-ERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN---------NCFHPDAVQLVARLEPPTSRSEIFCA 353 (520)
Q Consensus 288 ~--~-~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~---------~~~~~~~l~~la~~~~~~~G~~r~al 353 (520)
. . ...+.+.+.+||....|.+|+++. +++..++..+++.. ..+++++++.+... .+.|++|...
T Consensus 153 ~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~--~~~gn~reL~ 230 (265)
T 2bjv_A 153 PAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY--RWPGNIRELK 230 (265)
T ss_dssp HHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS--CCTTHHHHHH
T ss_pred HHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC--CCCCCHHHHH
Confidence 1 1 112457788898655689999976 77777776665431 25899999999764 5799999999
Q ss_pred HHHHhhhc
Q psy17062 354 NHYTNEKK 361 (520)
Q Consensus 354 ~~l~~a~~ 361 (520)
++++.+..
T Consensus 231 ~~l~~~~~ 238 (265)
T 2bjv_A 231 NVVERSVY 238 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.67 E-value=9.1e-16 Score=158.45 Aligned_cols=207 Identities=13% Similarity=0.180 Sum_probs=137.4
Q ss_pred hccCCCCCCCCC-chHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 131 SLHLSRVPESLP-CREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 131 ~l~~~~~p~~l~-gr~~ei~~l~~~L~~~~~~-~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+...+.++.++ |....+ .+ ..+...... +.+++++|+||+|+|||++++++++.+..... +..++++++..+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~-a~-~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~~~-- 171 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF-AY-HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKF-- 171 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH-HH-HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHHHH--
T ss_pred CCCCCCChhhcCCCCchHH-HH-HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHH--
Confidence 345555666666 544333 11 222222222 22678999999999999999999999866533 567888888664
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC-CceEEEEcCCccccc--cChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH-GPCVLLIDELDYLCN--KRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~-~~~vLiiDEid~l~~--~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
...+...+... ....+...+ . .+.||||||+|.+.. ..++.|+.+++.... .+..+|| +++.
T Consensus 172 ----~~~~~~~~~~~------~~~~~~~~~---~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIi-tt~~ 236 (440)
T 2z4s_A 172 ----LNDLVDSMKEG------KLNEFREKY---RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVI-CSDR 236 (440)
T ss_dssp ----HHHHHHHHHTT------CHHHHHHHH---TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEE-EESS
T ss_pred ----HHHHHHHHHcc------cHHHHHHHh---cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEE-EECC
Confidence 22223332211 011122222 3 688999999999987 467778888876532 2334444 4443
Q ss_pred -CCCchhhhhhhhhccCCc-ceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 286 -MDLPERTLKGKVSSRMGL-TRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 286 -~~~~~~~l~~~l~sR~~~-~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
..... .+.+++.+||.. ..+.|++|+.+++.+||...+... ..++++++++|+.. +.|++|.+.+++..+..
T Consensus 237 ~~~~l~-~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~---~~gn~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 237 EPQKLS-EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAEN---VDDNLRRLRGAIIKLLV 311 (440)
T ss_dssp CGGGCS-SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH---CCSCHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Confidence 33222 256788888831 248999999999999999988643 56789999999998 68999999999988765
No 55
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=4.7e-16 Score=152.79 Aligned_cols=208 Identities=13% Similarity=0.151 Sum_probs=147.0
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|++..+.++.+.+.... ....++||+|+||||||++|+++++..... +.+++.++|..+... . +.+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~~~~~~--l---~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA--PSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNES--L---LESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC--STTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECSSCCHH--H---HHHH
T ss_pred CcEECCHHHHHHHHHHHHHh--CCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCCCCChH--H---HHHH
Confidence 57899999999999998853 445679999999999999999999865322 578899999887531 1 2234
Q ss_pred HhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCCch
Q psy17062 220 LLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDLPE 290 (520)
Q Consensus 220 l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~~~ 290 (520)
++|..... ..........|.. ..+.+||||||+.+....+..|+.+++.... ...++.+|++||.. ...
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~-a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~-l~~ 150 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVE-ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD-LAE 150 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHH-HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC-HHH
T ss_pred hcCccccccCchhhhhcCHHHh-cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc-HHH
Confidence 45542110 0000000001111 1457999999999999888889999885421 13458899999874 111
Q ss_pred ----hhhhhhhhccCCcceEEeCCCC--HHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 291 ----RTLKGKVSSRMGLTRLMFKPYD--HHQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 291 ----~~l~~~l~sR~~~~~i~~~~~~--~~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+.+.+.+||....|.+||+. .+++..++.+++... ..+++++++.+... .+.||+|.+.+++
T Consensus 151 ~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~--~wpGnvReL~~~l 228 (304)
T 1ojl_A 151 EVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY--DWPGNIRELENAI 228 (304)
T ss_dssp HHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC--CCSSHHHHHHHHH
T ss_pred HHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC--CCCCCHHHHHHHH
Confidence 1245678889876678899998 578888887766532 46899999999885 4799999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+.++.
T Consensus 229 ~~~~~ 233 (304)
T 1ojl_A 229 ERAVV 233 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=8.1e-16 Score=147.36 Aligned_cols=196 Identities=16% Similarity=0.271 Sum_probs=126.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
..+.++|.+....++.+...... .-..+.+++|+||+|||||+++++++..+ +..++.+++.++.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~------~~~~i~~~~~~~~- 86 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFV- 86 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHH-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeeHHHHH-
Confidence 34557788777666665544321 11234569999999999999999999987 6677888775421
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KP 273 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~ 273 (520)
..+.+ .....+...|..+ ..+++++|||+|.+.... ...+..++..+. ..
T Consensus 87 ---------~~~~~------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 87 ---------EMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp ---------HSCTT------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred ---------HHHhh------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11111 1223344444443 368999999999886432 123444444332 22
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
...+++++++|.++.+ ++++.+ ||.. .|.|+.|+.+++.+|++.+++......+..+..++..+.++.| +.
T Consensus 152 ~~~~i~~a~t~~p~~l----d~~l~r~~rf~~-~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~--~d 224 (254)
T 1ixz_A 152 DTAIVVMAATNRPDIL----DPALLRPGRFDR-QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG--AD 224 (254)
T ss_dssp TCCEEEEEEESCGGGS----CGGGGSTTSSCE-EEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH--HH
T ss_pred CCCEEEEEccCCchhC----CHHHcCCCcCCe-EEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCH--HH
Confidence 4457888899987654 445555 6754 5999999999999999988876544445568899998666554 34
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
+.++|..++.
T Consensus 225 l~~~~~~a~~ 234 (254)
T 1ixz_A 225 LENLLNEAAL 234 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555544
No 57
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.4e-15 Score=150.47 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=138.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|++..++.|...+.. +...+++|+||+|+|||++++++++.+..... ...++++++.+..... .
T Consensus 26 ~~~g~~~~~~~L~~~i~~----g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~~-~------- 92 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRGID-V------- 92 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCSHH-H-------
T ss_pred HhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCcccccHH-H-------
Confidence 467888888877777653 33345999999999999999999999864311 2456778876543211 1
Q ss_pred HhcCCCChHHHHHHHHHHHcCC----CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhh
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRP----HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKG 295 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~----~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~ 295 (520)
..+.+....... ..+.|+||||+|.+....++.|..+++.+ .....+|+++|... .+.+
T Consensus 93 ----------ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~n~~~----~i~~ 155 (340)
T 1sxj_C 93 ----------VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY---TKNTRFCVLANYAH----KLTP 155 (340)
T ss_dssp ----------HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGG----GSCH
T ss_pred ----------HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC---CCCeEEEEEecCcc----ccch
Confidence 111122222111 35789999999999988888999999865 34566777787643 3567
Q ss_pred hhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 296 KVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 296 ~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
.+.+||. .+.|++++.+++.+++...++.. ..+++++++.++.. +.|++|+++++++.++.
T Consensus 156 ~i~sR~~--~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~---s~G~~r~~~~~l~~~~~ 217 (340)
T 1sxj_C 156 ALLSQCT--RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIEL---SNGDMRRVLNVLQSCKA 217 (340)
T ss_dssp HHHTTSE--EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHH---HTTCHHHHHHHTTTTTT
T ss_pred hHHhhce--eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 8999986 49999999999999999988643 56899999999998 78999999999987654
No 58
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=4.3e-15 Score=150.42 Aligned_cols=190 Identities=21% Similarity=0.217 Sum_probs=135.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEE
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVE 200 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~ 200 (520)
+.++|++..++.+...+.. +..+..++|+||+|+|||++++.+++.+...... ...++.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE
T ss_pred hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE
Confidence 4589999999999988864 3345578999999999999999999988432110 001122
Q ss_pred EccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEE
Q psy17062 201 MNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI 278 (520)
Q Consensus 201 v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~ 278 (520)
+++... .........+....... ..+.||||||+|.+....++.|+.+++.. ..+++
T Consensus 93 ~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~---~~~~~ 151 (373)
T 1jr3_A 93 IDAASR------------------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVK 151 (373)
T ss_dssp EETTCS------------------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC---CSSEE
T ss_pred eccccc------------------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC---CCceE
Confidence 222110 00111222222221111 56789999999999887788888888743 45788
Q ss_pred EEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy17062 279 ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 279 vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~ 357 (520)
+|++++... .+...+.+||. .+.|++++.+++.+++..+++.. ..+++++++.|+.. ..|+++.++++++
T Consensus 152 ~Il~~~~~~----~l~~~l~sr~~--~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~---~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 152 FLLATTDPQ----KLPVTILSRCL--QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA---AEGSLRDALSLTD 222 (373)
T ss_dssp EEEEESCGG----GSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH---SSSCHHHHHHHHH
T ss_pred EEEEeCChH----hCcHHHHhhee--EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 888887544 24567888984 49999999999999999988654 46789999999998 6899999999998
Q ss_pred hhhc
Q psy17062 358 NEKK 361 (520)
Q Consensus 358 ~a~~ 361 (520)
.+..
T Consensus 223 ~~~~ 226 (373)
T 1jr3_A 223 QAIA 226 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 59
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=3.3e-16 Score=142.61 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=109.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----CCeEEEEEccccCCChHHH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG----DKFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----~~~~~i~v~~~~~~~~~~~ 212 (520)
..+.++||+++++++.+.+.. ..+.+++|+|++|||||++++.+++.+..... .+..++++++.....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 91 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---- 91 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT----
T ss_pred cccccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc----
Confidence 345689999999999888754 45678999999999999999999999865211 157788888754321
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHc---CCCCceEEEEcCCcccccc--------ChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 213 YSRILELLLNVDAPPEQAKAMLERHFT---RPHGPCVLLIDELDYLCNK--------RQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 213 ~~~i~~~l~g~~~~~~~~~~~l~~~~~---~~~~~~vLiiDEid~l~~~--------~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
+. .........+...+. ....+.||||||+|.+... ..+.|..+++ ..++.+|+
T Consensus 92 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~~i~ 156 (195)
T 1jbk_A 92 ---------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVG 156 (195)
T ss_dssp ---------TT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCCEEE
T ss_pred ---------cC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeEEEE
Confidence 00 001112222222222 2356889999999999643 3566777665 45677888
Q ss_pred EEcCCCCchh-hhhhhhhccCCcceEEeCCCCHHHHHHHH
Q psy17062 282 IANTMDLPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 282 ~tn~~~~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il 320 (520)
++|....... .+.+++.+||. .|.|++|+.+++.+||
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~--~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEE--EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhc--eeecCCCCHHHHHHHh
Confidence 8886542221 24678889996 3999999999998875
No 60
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.64 E-value=5.3e-16 Score=151.70 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC-
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR- 240 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~- 240 (520)
..+.++||+||||||||++|+++|+.+ +.++++++|..+.+. +.|. ....+...|..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~----------~~g~------~~~~i~~~f~~a 91 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESG----------NAGE------PAKLIRQRYREA 91 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-------------H------HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhc----------cCch------hHHHHHHHHHHH
Confidence 456789999999999999999999999 899999998765321 1111 22223333322
Q ss_pred -----CCCceEEEEcCCccccccCh-------------HHHHHHHHhcC----------CCCCcEEEEEEEcCCCCchhh
Q psy17062 241 -----PHGPCVLLIDELDYLCNKRQ-------------DVIYNILEYLN----------KPKSRLIILCIANTMDLPERT 292 (520)
Q Consensus 241 -----~~~~~vLiiDEid~l~~~~~-------------~~L~~ll~~~~----------~~~~~v~vI~~tn~~~~~~~~ 292 (520)
...++||||||||.+..... ..|+++++... ....+++||++||..+.++..
T Consensus 92 ~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a 171 (293)
T 3t15_A 92 AEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 171 (293)
T ss_dssp HHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH
T ss_pred HHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH
Confidence 25789999999999987322 55667765221 134679999999998765543
Q ss_pred hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 293 LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 293 l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
+.++ .||... |. .|+.+++.+|++.++.. ..++.+.+..+... +.|...
T Consensus 172 l~R~--~R~d~~-i~--~P~~~~r~~Il~~~~~~-~~~~~~~l~~~~~~---~~~~~l 220 (293)
T 3t15_A 172 LIRD--GRMEKF-YW--APTREDRIGVCTGIFRT-DNVPAEDVVKIVDN---FPGQSI 220 (293)
T ss_dssp HHHH--HHEEEE-EE--CCCHHHHHHHHHHHHGG-GCCCHHHHHHHHHH---SCSCCH
T ss_pred HhCC--CCCcee-Ee--CcCHHHHHHHHHHhccC-CCCCHHHHHHHhCC---CCcccH
Confidence 3221 466432 44 35999999999988875 34455555555444 666533
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.64 E-value=3.3e-15 Score=148.94 Aligned_cols=187 Identities=16% Similarity=0.208 Sum_probs=136.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~-~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~ 217 (520)
+.++|++..++.+...+..... +..+.+++|+||||+||||+++.++..+ +..+...++........
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l------~~~~~~~sg~~~~~~~~------ 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTNIHVTSGPVLVKQGD------ 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCCEEEEETTTCCSHHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEechHhcCHHH------
Confidence 4578888888888887765422 3455789999999999999999999998 66666665544332111
Q ss_pred HHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCC---------------CCcEEEEEE
Q psy17062 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKP---------------KSRLIILCI 282 (520)
Q Consensus 218 ~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~---------------~~~v~vI~~ 282 (520)
. ...+.......|+||||++.+....++.|+..++..... -..+.++++
T Consensus 93 ------------l----~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 93 ------------M----AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ------------H----HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ------------H----HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 1 111111235679999999999887777787777543110 124677787
Q ss_pred EcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
++... .+.+.+.+||.. .+.|++++.+++.+||+..++.. ..++++++..|++. ..|++|.++++|+.+..
T Consensus 157 t~~~~----~Ls~~l~sR~~l-~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~---~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 157 TTRSG----LLSSPLRSRFGI-ILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR---SRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp ESCGG----GSCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT---STTCHHHHHHHHHHHHH
T ss_pred cCCcc----cCCHHHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh---cCCChHHHHHHHHHHHH
Confidence 77654 356788899964 38999999999999999887654 56789999999987 78999999999988754
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.64 E-value=3e-16 Score=163.44 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=130.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~i~v~~~~~~~~~~~~ 213 (520)
.+.++||+.+++++...|.. ...+++||+||||||||++|+.+++.+.....+ +..++.+++..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------- 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------- 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc--------
Confidence 34689999999999988864 445789999999999999999999998653211 56678887761
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch-
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE- 290 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~- 290 (520)
.+.|. ....+..+|... ..+.||||| .....++.|..+++ .+.+.+|+++|..+...
T Consensus 247 -----~~~g~------~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~-----~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 247 -----KYRGE------FEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLA-----RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTT-----SSSCEEEEECCTTTTHHH
T ss_pred -----cccch------HHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhc-----CCCEEEEecCCHHHHHHH
Confidence 11122 111122222221 368899999 22223334444443 56789999999876432
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHcCCCCCC---HHHHHHHHHhhhc
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----NCFHPDAVQLVARLEPPTSRS---EIFCANHYTNEKK 361 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----~~~~~~~l~~la~~~~~~~G~---~r~al~~l~~a~~ 361 (520)
..+++.+.+||.. |.|++|+.+++.+||+.++... ..++++++..++....++.++ ++.++++++.++.
T Consensus 307 ~~~~~al~~Rf~~--i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 307 IEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred hhcCHHHHHhCcc--ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 1256789999964 9999999999999999887653 678999999999987777665 7789999988764
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=1.8e-15 Score=167.26 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=148.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~ 213 (520)
..++|++..+..+...+.....+ .+.+++||+||||||||++|+++++.+... +.++++++|..+.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 45789999999999999886433 122379999999999999999999998544 6789999998876421110
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcC
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANT 285 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~ 285 (520)
.......+.. ..++|||||||+.+....++.|+++|+.... ...++++|++||.
T Consensus 568 -------------~~~l~~~~~~-----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 -------------GGQLTEKVRR-----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------------CHHHHHH-----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------cchhhHHHHh-----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0001111111 3678999999999999999999999986321 2346789999996
Q ss_pred CCCc--------hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHcCCCCC
Q psy17062 286 MDLP--------ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHPDAVQLVARLEPPTSR 347 (520)
Q Consensus 286 ~~~~--------~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~~~l~~la~~~~~~~G 347 (520)
.... ...+.+.|.+||.. .|.|++|+.+++.+|+...+... ..++++++++|+.....+.|
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~-~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 708 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDE-IIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEY 708 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSE-EEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTT
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCe-EEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCC
Confidence 4321 12356789999964 59999999999999999877642 46899999999998777888
Q ss_pred CHHHHHHHHHhhhc
Q psy17062 348 SEIFCANHYTNEKK 361 (520)
Q Consensus 348 ~~r~al~~l~~a~~ 361 (520)
++|...+.++++..
T Consensus 709 ~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 709 GARPLRRAIQKHVE 722 (758)
T ss_dssp TTTTHHHHHHHHTH
T ss_pred CChHHHHHHHHHHH
Confidence 88887777776653
No 64
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.64 E-value=1.8e-15 Score=146.95 Aligned_cols=196 Identities=16% Similarity=0.275 Sum_probs=127.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHh--------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~--------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
..+.++|.+....++.+...... .-..+.+++|+||+|||||+++++++..+ ...++.+++.++.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~------~~~~i~~~~~~~~- 110 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFV- 110 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHH-
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc------CCCEEEecHHHHH-
Confidence 34557788877777666554321 11234569999999999999999999987 6677888875431
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CC
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KP 273 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~ 273 (520)
..+.+ .....+...|..+ ..++++|+||+|.+.... ...+..++..+. ..
T Consensus 111 ---------~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 111 ---------EMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---------HSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---------HHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11111 1222333344433 368999999999875432 234555555442 22
Q ss_pred CCcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHH
Q psy17062 274 KSRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIF 351 (520)
Q Consensus 274 ~~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~ 351 (520)
...+++++++|.++.++ +++.+ ||.. .|.|++|+.+++.+||+.+++......+..+..++..+.++.| +.
T Consensus 176 ~~~~i~~a~t~~p~~ld----~~l~r~~rf~~-~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~--~d 248 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILD----PALLRPGRFDR-QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG--AD 248 (278)
T ss_dssp TCCEEEEEEESCTTSSC----HHHHSTTSSCC-EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH--HH
T ss_pred CCCEEEEEecCCchhCC----HhHcCCCcCCe-EEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCH--HH
Confidence 34578889999887544 44554 6764 5999999999999999998876544445568889998655543 33
Q ss_pred HHHHHHhhhc
Q psy17062 352 CANHYTNEKK 361 (520)
Q Consensus 352 al~~l~~a~~ 361 (520)
+.++|..++.
T Consensus 249 l~~l~~~a~~ 258 (278)
T 1iy2_A 249 LENLLNEAAL 258 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 65
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.63 E-value=5.8e-15 Score=142.66 Aligned_cols=194 Identities=17% Similarity=0.272 Sum_probs=128.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Q psy17062 138 PESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~ 208 (520)
.+.+.|-++..+.|.+.+...+ .-..+.+++|+||||||||+++++++..+ +..++.+++.++.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHHHHh
Confidence 3456777777777766442211 12345669999999999999999999987 77899999887643
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--------hHHHHHHHHhcC--CCCCc
Q psy17062 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--------QDVIYNILEYLN--KPKSR 276 (520)
Q Consensus 209 ~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--------~~~L~~ll~~~~--~~~~~ 276 (520)
.+ .......+..+|..+ ..|+++|+||++.+...+ ...+.+++..+. .....
T Consensus 83 ~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 21 111233344444443 478999999999876432 123444444332 23456
Q ss_pred EEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHc--CCCCCCH
Q psy17062 277 LIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNN---NCFHPDAVQLVARLE--PPTSRSE 349 (520)
Q Consensus 277 v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~---~~~~~~~l~~la~~~--~~~~G~~ 349 (520)
+++++++|.++.++ +++.+ ||. ..|.|+.|+.+++.+||+.+++.. ....+..++.++..+ .+++|..
T Consensus 147 ~i~ia~tn~p~~LD----~al~r~gRfd-~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgad 221 (274)
T 2x8a_A 147 VFIMAATNRPDIID----PAILRPGRLD-KTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGAD 221 (274)
T ss_dssp EEEEEEESCGGGSC----HHHHSTTSSC-EEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHH
T ss_pred EEEEeecCChhhCC----HhhcCcccCC-eEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHH
Confidence 78899999988654 45554 887 459999999999999999988642 233456688888764 4787765
Q ss_pred HHHHHHHHhhh
Q psy17062 350 IFCANHYTNEK 360 (520)
Q Consensus 350 r~al~~l~~a~ 360 (520)
..+ +|++|+
T Consensus 222 l~~--l~~~a~ 230 (274)
T 2x8a_A 222 LSA--LVREAS 230 (274)
T ss_dssp HHH--HHHHHH
T ss_pred HHH--HHHHHH
Confidence 443 555554
No 66
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.63 E-value=8.3e-15 Score=146.05 Aligned_cols=185 Identities=14% Similarity=0.186 Sum_probs=129.3
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC------------------CeEEEEEc
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGD------------------KFVYVEMN 202 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~------------------~~~~i~v~ 202 (520)
++-+++.++.+...+. .+..+..+||+||+|+|||++|+.+++.+...... ...++.++
T Consensus 4 ~pw~~~~~~~l~~~i~---~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQ---AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp CGGGHHHHHHHHHHHH---TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred CCchHHHHHHHHHHHH---cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 3455666666666554 23445679999999999999999999998543210 01233333
Q ss_pred cccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEE
Q psy17062 203 ALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLII 279 (520)
Q Consensus 203 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~v 279 (520)
.... +.......+.+ +...+... +...|+||||+|.|....++.|+..++.+ ..++++
T Consensus 81 ~~~~---------------~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep---~~~~~~ 141 (334)
T 1a5t_A 81 PEKG---------------KNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP---PAETWF 141 (334)
T ss_dssp CCTT---------------CSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC---CTTEEE
T ss_pred cccc---------------CCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC---CCCeEE
Confidence 3200 01111222222 22222222 56899999999999988888888888743 457888
Q ss_pred EEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q psy17062 280 LCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTNE 359 (520)
Q Consensus 280 I~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a 359 (520)
|++++..+ .+.+.+.|||.. +.|++++.+++.++|..++ .+++++++.+++. ..|+++.++++++..
T Consensus 142 Il~t~~~~----~l~~ti~SRc~~--~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~---s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 142 FLATREPE----RLLATLRSRCRL--HYLAPPPEQYAVTWLSREV----TMSQDALLAALRL---SAGSPGAALALFQGD 208 (334)
T ss_dssp EEEESCGG----GSCHHHHTTSEE--EECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHH---TTTCHHHHHHTTSSH
T ss_pred EEEeCChH----hCcHHHhhccee--eeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHH---cCCCHHHHHHHhccc
Confidence 88888653 357789999954 9999999999999999876 4689999999988 789999999888754
Q ss_pred h
Q psy17062 360 K 360 (520)
Q Consensus 360 ~ 360 (520)
.
T Consensus 209 ~ 209 (334)
T 1a5t_A 209 N 209 (334)
T ss_dssp H
T ss_pred h
Confidence 3
No 67
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.62 E-value=4e-16 Score=157.57 Aligned_cols=200 Identities=14% Similarity=0.202 Sum_probs=137.6
Q ss_pred CCchHHHHHHHHHHHHHHhhc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 141 LPCREAEFQSIHRFLLSKISQ-----------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~-----------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
++|++..++.+...+...... ..+.++||+||||||||++|+++++.+ +.+++.++|..+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTEA 90 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhccc
Confidence 689999999998888533211 255789999999999999999999998 889999999876432
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC------CCceEEEEcCCcccccc--------------ChHHHHHHHHh
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP------HGPCVLLIDELDYLCNK--------------RQDVIYNILEY 269 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~------~~~~vLiiDEid~l~~~--------------~~~~L~~ll~~ 269 (520)
. +.|.. ....+...+... ..++||||||+|.+... .++.|+.+|+.
T Consensus 91 ~---------~~g~~-----~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 91 G---------YVGED-----VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp H---------HHHHH-----HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred c---------ccccc-----HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 1 11110 112222222222 35789999999999876 57788888882
Q ss_pred c------------------CCCCCcEEEEEEEcCCCCc-----------------------------------------h
Q psy17062 270 L------------------NKPKSRLIILCIANTMDLP-----------------------------------------E 290 (520)
Q Consensus 270 ~------------------~~~~~~v~vI~~tn~~~~~-----------------------------------------~ 290 (520)
. .....++.+|++++..++. .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 1 1123466777777753110 0
Q ss_pred hhhhhhhhccCCcceEEeCCCCHHHHHHHHHH----HHh-------CC---CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 291 RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQN----RLK-------NN---NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~----~l~-------~~---~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+.+.|.+||.. .+.|.+|+.+++.+|+.. .+. .. ..++++++++|+.......+++|...+++
T Consensus 237 ~~~~~~l~~R~~~-~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~i 315 (363)
T 3hws_A 237 FGLIPEFIGRLPV-VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIV 315 (363)
T ss_dssp HTCCHHHHTTCCE-EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHH
T ss_pred cCCCHHHhcccCe-eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHH
Confidence 1146788899975 477999999999999885 221 11 45799999999986444667777777777
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
+++..
T Consensus 316 e~~~~ 320 (363)
T 3hws_A 316 EAALL 320 (363)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=1.3e-15 Score=154.66 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=133.6
Q ss_pred CCCchHHHHHHHHHHHHH----Hh----------------------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC
Q psy17062 140 SLPCREAEFQSIHRFLLS----KI----------------------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 193 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~----~~----------------------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~ 193 (520)
.++|++...+.|...+.. .. ......++||+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 357999999988887732 11 11245679999999999999999999988
Q ss_pred CCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC------CCceEEEEcCCcccccc---------
Q psy17062 194 DKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP------HGPCVLLIDELDYLCNK--------- 258 (520)
Q Consensus 194 ~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~------~~~~vLiiDEid~l~~~--------- 258 (520)
+.+++.++|..+... .+.|... ...+...+... ..+.||||||+|.+...
T Consensus 97 -~~~~~~~~~~~~~~~---------~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~ 161 (376)
T 1um8_A 97 -DIPIAISDATSLTEA---------GYVGEDV-----ENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD 161 (376)
T ss_dssp -TCCEEEEEGGGCC-----------------C-----THHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------
T ss_pred -CCCEEEecchhhhhc---------CcCCccH-----HHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc
Confidence 788999999886521 1222210 11122222111 36789999999999887
Q ss_pred -----ChHHHHHHHHhcC------------------CCCCcEEEEEEEcCCCCc--------------------------
Q psy17062 259 -----RQDVIYNILEYLN------------------KPKSRLIILCIANTMDLP-------------------------- 289 (520)
Q Consensus 259 -----~~~~L~~ll~~~~------------------~~~~~v~vI~~tn~~~~~-------------------------- 289 (520)
.++.|+.+|+... ....++++|+++|...+.
T Consensus 162 ~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~ 241 (376)
T 1um8_A 162 VSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEA 241 (376)
T ss_dssp --CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTT
T ss_pred cchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhH
Confidence 6778888888431 012556788887731100
Q ss_pred -----------hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHH----H-------HhC---CCCCCHHHHHHHHHHcCC
Q psy17062 290 -----------ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQN----R-------LKN---NNCFHPDAVQLVARLEPP 344 (520)
Q Consensus 290 -----------~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~----~-------l~~---~~~~~~~~l~~la~~~~~ 344 (520)
...+.+.|.+||.. .+.|++++.+++..|+.. . +.. ...++++++++|+.....
T Consensus 242 ~~~~~~~~~l~~~~~~p~l~~R~~~-~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 320 (376)
T 1um8_A 242 ILHLVQTHDLVTYGLIPELIGRLPV-LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE 320 (376)
T ss_dssp SGGGCCHHHHHHTTCCHHHHTTCCE-EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHhhcCCChHHhcCCCc-eeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc
Confidence 11245778899964 499999999999999962 1 111 145889999999998433
Q ss_pred CCCCHHHHHHHHHhhhc
Q psy17062 345 TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 345 ~~G~~r~al~~l~~a~~ 361 (520)
..|++|.+.++++.+..
T Consensus 321 ~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 321 RKTGARGLRAIIEDFCL 337 (376)
T ss_dssp TTCTGGGHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHH
Confidence 34888888888887654
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=5.5e-15 Score=148.62 Aligned_cols=208 Identities=11% Similarity=0.111 Sum_probs=134.8
Q ss_pred cCCCCC---CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCC--------------
Q psy17062 133 HLSRVP---ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDK-------------- 195 (520)
Q Consensus 133 ~~~~~p---~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~-------------- 195 (520)
...+.| +.++|++..++.+..++. ..+...+++|+||+|+|||++++.+++.+.......
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~---~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh---hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 334445 357899988777766651 233334499999999999999999999763321100
Q ss_pred ---------eEEEEEccccCCC-hHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC-CCCceEEEEcCCccccccChHHHH
Q psy17062 196 ---------FVYVEMNALSIPE-PKRAYSRILELLLNVDAPPEQAKAMLERHFTR-PHGPCVLLIDELDYLCNKRQDVIY 264 (520)
Q Consensus 196 ---------~~~i~v~~~~~~~-~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~-~~~~~vLiiDEid~l~~~~~~~L~ 264 (520)
..++.+++..... .......++..+... ...... + .+.. ...+.||||||++.|....++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~---~--~ls~l~~~~~vlilDE~~~L~~~~~~~L~ 155 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM-EQVDFQ---D--SKDGLAHRYKCVIINEANSLTKDAQAALR 155 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTT-TC-----------------CCEEEEEECTTSSCHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHh-cccccc---c--cccccCCCCeEEEEeCccccCHHHHHHHH
Confidence 0123333322110 000111111111100 000000 0 0001 236889999999999888888899
Q ss_pred HHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHc
Q psy17062 265 NILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFH-PDAVQLVARLE 342 (520)
Q Consensus 265 ~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~-~~~l~~la~~~ 342 (520)
.+++.+. .+..+|++++..+. +.+.+.+||. .+.|++++.+++.+++...++.. ..++ +++++.|+..
T Consensus 156 ~~le~~~---~~~~~Il~t~~~~~----l~~~l~sR~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~- 225 (354)
T 1sxj_E 156 RTMEKYS---KNIRLIMVCDSMSP----IIAPIKSQCL--LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA- 225 (354)
T ss_dssp HHHHHST---TTEEEEEEESCSCS----SCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH-
T ss_pred HHHHhhc---CCCEEEEEeCCHHH----HHHHHHhhce--EEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH-
Confidence 9998653 35778888887653 4567889994 49999999999999999988654 4567 8999999988
Q ss_pred CCCCCCHHHHHHHHHhhhc
Q psy17062 343 PPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 343 ~~~~G~~r~al~~l~~a~~ 361 (520)
+.|++|.+++.++.++.
T Consensus 226 --~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 226 --SNGNLRVSLLMLESMAL 242 (354)
T ss_dssp --HTTCHHHHHHHHTHHHH
T ss_pred --cCCCHHHHHHHHHHHHH
Confidence 78999999999998765
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=3.4e-15 Score=148.78 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=137.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|++..+..+...+.. +.++||+||||||||++++++++.+ +..++.++|.....+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~-------- 86 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPS-------- 86 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHH--------
T ss_pred cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChh--------
Confidence 4578999998888777754 2579999999999999999999988 7778888886544332
Q ss_pred HHhcCCCChHHHHHHHHHH--HcCC-CCceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcCCC
Q psy17062 219 LLLNVDAPPEQAKAMLERH--FTRP-HGPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANTMD 287 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~--~~~~-~~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~~~ 287 (520)
.+.|...... -... +... -...||||||+|.+....++.|+.+++... ....++++|+++|..+
T Consensus 87 ~l~g~~~~~~-----~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 87 DLIGTMIYNQ-----HKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp HHHEEEEEET-----TTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred hcCCceeecC-----CCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 2222210000 0000 0000 123799999999999988999999987531 1244678888888665
Q ss_pred Cchh-hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHcC
Q psy17062 288 LPER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-----------------------NCFHPDAVQLVARLEP 343 (520)
Q Consensus 288 ~~~~-~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-----------------------~~~~~~~l~~la~~~~ 343 (520)
.... .+.+++.+||... +.|++|+.+++.+|++.++... ..++++.+++++..+.
T Consensus 162 ~~~~~~l~~~l~~Rf~~~-i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~ 240 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMK-IHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVF 240 (331)
T ss_dssp CSCCCCCCHHHHTTSSEE-EECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred ccCcccCCHHHHhheeEE-EEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3321 2678899999643 9999999999999999887642 3467888888877642
Q ss_pred C-----------------CCCCHHHHHHHHHhhhc
Q psy17062 344 P-----------------TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 344 ~-----------------~~G~~r~al~~l~~a~~ 361 (520)
. +..++|.++.+++.+..
T Consensus 241 ~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a 275 (331)
T 2r44_A 241 ATRFPAEYGLEAEASYILYGASTRAAINLNRVAKA 275 (331)
T ss_dssp HHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHH
T ss_pred HHhccccccccccccccccCcChhHHHHHHHHHHH
Confidence 1 12268888888877654
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=4.6e-15 Score=164.21 Aligned_cols=210 Identities=11% Similarity=0.147 Sum_probs=148.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~ 213 (520)
..++|++..+..+...+.....+ .+.+++||+||||||||++|+++++.+ +.+++.++|.++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhh--
Confidence 35789999999999988875432 234579999999999999999999998 78899999988754211
Q ss_pred HHHHHHHhcCCCChHHH--HHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQA--KAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIA 283 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~--~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~t 283 (520)
...+.|....+... ...+...+.. ..++||||||++.+....++.|+++|+.... ...+++||+++
T Consensus 530 ---~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp ---CSSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred ---HhhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 12223332222111 0112222222 3689999999999999889999999985321 12468899999
Q ss_pred cCCCCc---------------------hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCCH
Q psy17062 284 NTMDLP---------------------ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFHP 332 (520)
Q Consensus 284 n~~~~~---------------------~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~~ 332 (520)
|..... ...+.+.|.+||... |.|++|+.+++..|+..++... ..+++
T Consensus 606 N~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp CSSCC-----------------CHHHHHHHSCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred CcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 973210 114578899999744 9999999999999999988632 35799
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 333 DAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 333 ~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
+++++|+.......+++|.+.++++.+..
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 99999998753334447777777666553
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.57 E-value=1.3e-14 Score=153.71 Aligned_cols=199 Identities=16% Similarity=0.225 Sum_probs=127.1
Q ss_pred CCchHHHHHHHHHHHHHHh--hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKI--SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~--~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
++|.+.....+..++.... ....+.+++|+||||||||+++++++..+ +.+++.++|....+....... ..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~-~~ 155 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGH-RR 155 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC-------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhH-HH
Confidence 5688777777766544321 22356789999999999999999999999 888999998776542222111 11
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC-CCceEEEEcCCccccccCh----HHHHHHHHhcCC------------CCCcEEEEE
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP-HGPCVLLIDELDYLCNKRQ----DVIYNILEYLNK------------PKSRLIILC 281 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~-~~~~vLiiDEid~l~~~~~----~~L~~ll~~~~~------------~~~~v~vI~ 281 (520)
.+.|. ....+...|..+ ....||||||+|.+....+ +.|+.+|+.... ...++++|+
T Consensus 156 ~~ig~------~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp --------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HHhcc------CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 22222 223344455555 3445999999999988743 566666653211 015688999
Q ss_pred EEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 282 IANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN-----------NNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 282 ~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~-----------~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
++|..+ .++++|.+||. .|.|++|+.+++.+|+..++-. ...++++++..++..+.. .|++|
T Consensus 230 ttN~~~----~l~~aL~~R~~--vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~-~~~vR 302 (543)
T 3m6a_A 230 TANNLA----TIPGPLRDRME--IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR-EAGVR 302 (543)
T ss_dssp ECSSTT----TSCHHHHHHEE--EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC-CSSSH
T ss_pred ccCccc----cCCHHHHhhcc--eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh-hhchh
Confidence 999876 35678888995 4999999999999999987621 135689999998886553 46666
Q ss_pred HHHHHHHhh
Q psy17062 351 FCANHYTNE 359 (520)
Q Consensus 351 ~al~~l~~a 359 (520)
.+.+.+..+
T Consensus 303 ~L~~~i~~~ 311 (543)
T 3m6a_A 303 SLERQLAAI 311 (543)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.5e-14 Score=161.78 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=148.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQ-----STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~-----~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~ 213 (520)
..++|++..+..+...+.....+ .+..++||+||+|||||++|+++++.+... +.++++++|..+.....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~-- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHA-- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGG--
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhH--
Confidence 35789999999999999886543 223589999999999999999999998654 56899999988765321
Q ss_pred HHHHHHHhcCCCChHHHH--HHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEE
Q psy17062 214 SRILELLLNVDAPPEQAK--AMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIA 283 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~--~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~t 283 (520)
...++|......... ..+...+.. ..+.||||||++.+....++.|+++|+.... ...+++||++|
T Consensus 633 ---~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 ---VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp ---GGGC--------------CHHHHHHH-CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred ---HHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 112222111000000 112222211 3578999999999999889999999985321 12367899999
Q ss_pred cCCC---------------C-------chhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------CCCC
Q psy17062 284 NTMD---------------L-------PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN----------NCFH 331 (520)
Q Consensus 284 n~~~---------------~-------~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~----------~~~~ 331 (520)
|... + ....+.+.|.+||... +.|.||+.+++..|+..++... ..++
T Consensus 709 n~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~-i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 709 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI-VVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELT 787 (854)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBC-CBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred CcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeE-EeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 8621 0 0112456788999643 8889999999999999887632 4589
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 332 PDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 332 ~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
++++++|+.......|++|.+.++++++..
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 999999999854447999988888887754
No 74
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.53 E-value=2e-14 Score=144.16 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=86.1
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhc----CCC------CCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCC-
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYL----NKP------KSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPY- 311 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~----~~~------~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~- 311 (520)
.+.||||||+|.+....++.|+.+++.. ... ..++.+|+++|..+ ..+.+++.+||.. .+.+++|
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~~l~~~L~~R~~~-~~~l~~~~ 219 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGL-SVEVLSPR 219 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSE-EEECCCCC
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC---CCCCHHHHhhcce-EEEcCCCC
Confidence 4789999999999998889999998852 111 13788999999643 1357789999965 4899999
Q ss_pred CHHHHHHHHHHHHh------------------------------CCCCCCHHHHHHHHHHcCCCCC-CHHHHHHHHHhhh
Q psy17062 312 DHHQLQEIVQNRLK------------------------------NNNCFHPDAVQLVARLEPPTSR-SEIFCANHYTNEK 360 (520)
Q Consensus 312 ~~~~~~~Il~~~l~------------------------------~~~~~~~~~l~~la~~~~~~~G-~~r~al~~l~~a~ 360 (520)
+.+++.+|+..++. ....++++++++|+....+..+ ++|.++++++.+.
T Consensus 220 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 220 DVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 56666688765311 0147899999999998766555 7999999998776
Q ss_pred c
Q psy17062 361 K 361 (520)
Q Consensus 361 ~ 361 (520)
.
T Consensus 300 ~ 300 (350)
T 1g8p_A 300 A 300 (350)
T ss_dssp H
T ss_pred H
Confidence 5
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=2.4e-14 Score=129.61 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=98.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC----CCeEEEEEccccCCChHHHH
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG----DKFVYVEMNALSIPEPKRAY 213 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~----~~~~~i~v~~~~~~~~~~~~ 213 (520)
.+.++||+.++..+.+.+.. ....+++|+||+|||||++++.+++.+..... .+..++++++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 91 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA----- 91 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH-----
T ss_pred cchhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc-----
Confidence 45689999999998888743 45678999999999999999999999855211 156777777654310
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHc---CCCCceEEEEcCCccccc---------cChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 214 SRILELLLNVDAPPEQAKAMLERHFT---RPHGPCVLLIDELDYLCN---------KRQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 214 ~~i~~~l~g~~~~~~~~~~~l~~~~~---~~~~~~vLiiDEid~l~~---------~~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
+. .........+...+. ....+.+|||||+|.+.. ...+.|..+++ ...+.+|+
T Consensus 92 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~~~ii~ 157 (187)
T 2p65_A 92 --------GA-KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGELRCIG 157 (187)
T ss_dssp --------HC-CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTCSCEEE
T ss_pred --------CC-CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCCeeEEE
Confidence 00 001111222222222 224688999999999972 23345555555 45678888
Q ss_pred EEcCCCCch-hhhhhhhhccCCcceEEeCCCC
Q psy17062 282 IANTMDLPE-RTLKGKVSSRMGLTRLMFKPYD 312 (520)
Q Consensus 282 ~tn~~~~~~-~~l~~~l~sR~~~~~i~~~~~~ 312 (520)
++|..+... ..+++++.+||.. |.+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~R~~~--i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALERRFQQ--ILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHHHEEE--EECCSCC
T ss_pred ecCHHHHHHHHhccHHHHHhcCc--ccCCCCC
Confidence 888654211 1246788899964 8888875
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.50 E-value=1.3e-14 Score=126.37 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=98.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|++..+.++.+.+.... ....++||+|+||||||++|+++++..... +.+++ ++|..+.+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a--~~~~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~~~~~~~~~--------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS--ETDIAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YRELTPDNAP--------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT--TCCSCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EEECCTTTSS---------
T ss_pred CceeCCHHHHHHHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EECCCCCcch---------
Confidence 47899999999999998753 345679999999999999999999865433 55777 9998765420
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc---hhhhhhh
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP---ERTLKGK 296 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~---~~~l~~~ 296 (520)
.....+... ...+|||||+|.+....|..|+.++.. ...++.+|+++|..... ...+...
T Consensus 67 ---------~~~~~~~~a-----~~g~l~ldei~~l~~~~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~~~~~ 129 (145)
T 3n70_A 67 ---------QLNDFIALA-----QGGTLVLSHPEHLTREQQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNHIIAE 129 (145)
T ss_dssp ---------CHHHHHHHH-----TTSCEEEECGGGSCHHHHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSCCCHH
T ss_pred ---------hhhcHHHHc-----CCcEEEEcChHHCCHHHHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCCCCHH
Confidence 011112111 457999999999999888888888853 24467788888864210 1123456
Q ss_pred hhccCCcceEEeCCC
Q psy17062 297 VSSRMGLTRLMFKPY 311 (520)
Q Consensus 297 l~sR~~~~~i~~~~~ 311 (520)
+..|+....|++||+
T Consensus 130 L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 130 LYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHHEEECCCC
T ss_pred HHHHhcCCEEeCCCC
Confidence 677776667999986
No 77
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.48 E-value=4.4e-14 Score=122.70 Aligned_cols=137 Identities=11% Similarity=0.107 Sum_probs=99.4
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|++..+.++.+.+..... ...+++|+|+||||||++|+++++.. . ++++++|..+.. .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~----------~ 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLI----------D 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHH----------H
T ss_pred CceeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCCh----------H
Confidence 468999999999999987543 44569999999999999999999876 5 788999876421 1
Q ss_pred HhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC-Cchhhhhhhhh
Q psy17062 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD-LPERTLKGKVS 298 (520)
Q Consensus 220 l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~-~~~~~l~~~l~ 298 (520)
+ ....+..+ .+.+|||||+|.+....+..|+.+++... ..++.+|+++|... .....+...+.
T Consensus 66 ~-------------~~~~~~~a-~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 66 M-------------PMELLQKA-EGGVLYVGDIAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp C-------------HHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred h-------------hhhHHHhC-CCCeEEEeChHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHH
Confidence 0 12222222 45799999999999988888999888543 45677888888542 11111667888
Q ss_pred ccCCcceEEeCCC
Q psy17062 299 SRMGLTRLMFKPY 311 (520)
Q Consensus 299 sR~~~~~i~~~~~ 311 (520)
.|+....|.+||+
T Consensus 130 ~rl~~~~i~lPpL 142 (143)
T 3co5_A 130 GLFSESVVRIPPL 142 (143)
T ss_dssp HHSSSEEEEECCC
T ss_pred HHhcCcEEeCCCC
Confidence 8987777999986
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=3.4e-16 Score=173.01 Aligned_cols=194 Identities=18% Similarity=0.310 Sum_probs=129.5
Q ss_pred CCCCchHHHHHHHHHHHHHHh---------hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh
Q psy17062 139 ESLPCREAEFQSIHRFLLSKI---------SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP 209 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~---------~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~ 209 (520)
+.+.|.+...+.|.+++.... .-.++.++||+||||||||++|++++..+ +..++.+++.++.+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~~l~~- 549 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLT- 549 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH------TCCCCCCCCSSSTT-
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh------CCCEEEEechHhhh-
Confidence 345666666666655543211 11356779999999999999999999998 78888999888643
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC-----------hHHHHHHHHhcC--CCC
Q psy17062 210 KRAYSRILELLLNVDAPPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR-----------QDVIYNILEYLN--KPK 274 (520)
Q Consensus 210 ~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~-----------~~~L~~ll~~~~--~~~ 274 (520)
.+.|+ ....+...|..+ ..|+||||||+|.+...+ ..++..++..+. ...
T Consensus 550 ---------~~~g~------~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 550 ---------MWFGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ---------CCTTT------SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred ---------hhcCc------cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 22233 122333344333 368999999999987543 234556665543 234
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhc--cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSS--RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFC 352 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~s--R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~a 352 (520)
.+++||++||.++.+ ++++.+ ||.. .|+|+.|+.+++.+|++.+++......+..++.+++.+.+++|....
T Consensus 615 ~~v~vI~tTN~~~~l----d~allrpgRf~~-~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~- 688 (806)
T 1ypw_A 615 KNVFIIGATNRPDII----DPAILRPGRLDQ-LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT- 688 (806)
T ss_dssp -CCBCCCCCBSCGGG----SCTTSSGGGTTS-CCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH-
T ss_pred CCeEEEEecCCcccC----CHHHhCccccCc-eeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH-
Confidence 578899999988754 445555 8863 49999999999999999999876555556677788888888775443
Q ss_pred HHHHHhhhc
Q psy17062 353 ANHYTNEKK 361 (520)
Q Consensus 353 l~~l~~a~~ 361 (520)
.+|+.|+.
T Consensus 689 -~l~~~a~~ 696 (806)
T 1ypw_A 689 -EICQRACK 696 (806)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 25555553
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=6.7e-13 Score=129.88 Aligned_cols=172 Identities=9% Similarity=0.073 Sum_probs=117.1
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhc
Q psy17062 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLN 222 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g 222 (520)
|+++.+..+...+.. +...++||+||+|+|||++++++++.+.........++++++.....
T Consensus 1 g~~~~~~~L~~~i~~----~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~-------------- 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENI-------------- 62 (305)
T ss_dssp ---CHHHHHHHHHHT----CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCB--------------
T ss_pred ChHHHHHHHHHHHHC----CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCC--------------
Confidence 344556666666543 33678999999999999999999986421101134567777642111
Q ss_pred CCCChHHHHHHHHHHHcCC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhc
Q psy17062 223 VDAPPEQAKAMLERHFTRP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSS 299 (520)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~s 299 (520)
....+.+.+ ..+... ....|+||||+|.|....++.|+..++.+ ...+++|++++.+. .+.+.+.|
T Consensus 63 ---~id~ir~li-~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep---~~~t~fIl~t~~~~----kl~~tI~S 131 (305)
T 2gno_A 63 ---GIDDIRTIK-DFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP---PEYAVIVLNTRRWH----YLLPTIKS 131 (305)
T ss_dssp ---CHHHHHHHH-HHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC---CTTEEEEEEESCGG----GSCHHHHT
T ss_pred ---CHHHHHHHH-HHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC---CCCeEEEEEECChH----hChHHHHc
Confidence 111122222 222222 45789999999999988899999999854 45677888777543 36678999
Q ss_pred cCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 300 RMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 300 R~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
| . +.|++++.+++.++|...+. ++++++ .. ..|+++.|+++++.
T Consensus 132 R--~--~~f~~l~~~~i~~~L~~~~~----i~~~~~----~~---~~g~~~~al~~l~~ 175 (305)
T 2gno_A 132 R--V--FRVVVNVPKEFRDLVKEKIG----DLWEEL----PL---LERDFKTALEAYKL 175 (305)
T ss_dssp T--S--EEEECCCCHHHHHHHHHHHT----THHHHC----GG---GGTCHHHHHHHHHH
T ss_pred e--e--EeCCCCCHHHHHHHHHHHhC----CCHHHH----HH---HCCCHHHHHHHHHH
Confidence 9 3 99999999999999998872 455554 22 58999999988864
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=2.9e-13 Score=140.81 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=127.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|++..++.+...+... .++||+||||||||++|+++++.+.. +.++.+++|.- .++ .
T Consensus 22 ~~ivGq~~~i~~l~~al~~~------~~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~~~~~~~-~t~--------~ 82 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG------ESVFLLGPPGIAKSLIARRLKFAFQN----ARAFEYLMTRF-STP--------E 82 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT------CEEEEECCSSSSHHHHHHHGGGGBSS----CCEEEEECCTT-CCH--------H
T ss_pred hhhHHHHHHHHHHHHHHhcC------CeeEeecCchHHHHHHHHHHHHHHhh----hhHHHHHHHhc-CCH--------H
Confidence 34789999998887776542 68999999999999999999987621 34566666653 233 3
Q ss_pred HHhcCCCChHHHHHHHHHHHcCC-C----CceEEEEcCCccccccChHHHHHHHHhcC--------CCCCcEEEEEEEcC
Q psy17062 219 LLLNVDAPPEQAKAMLERHFTRP-H----GPCVLLIDELDYLCNKRQDVIYNILEYLN--------KPKSRLIILCIANT 285 (520)
Q Consensus 219 ~l~g~~~~~~~~~~~l~~~~~~~-~----~~~vLiiDEid~l~~~~~~~L~~ll~~~~--------~~~~~v~vI~~tn~ 285 (520)
.+.|...... . .-...+... . .+.|||||||+.+....++.|+.+++... ....++ +|++||.
T Consensus 83 dL~G~~~~~~-~--~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~ 158 (500)
T 3nbx_X 83 EVFGPLSIQA-L--KDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNE 158 (500)
T ss_dssp HHHCCBC-------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESS
T ss_pred HhcCcccHHH-H--hhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhcccc
Confidence 4444211110 0 001223222 1 46799999999999888999999997421 112233 5777885
Q ss_pred CCCchhhhhhhhhccCCcceEEeCCCCH-HHHHHHHHHHHhC------------------------CCCCCHHHHHHHHH
Q psy17062 286 MDLPERTLKGKVSSRMGLTRLMFKPYDH-HQLQEIVQNRLKN------------------------NNCFHPDAVQLVAR 340 (520)
Q Consensus 286 ~~~~~~~l~~~l~sR~~~~~i~~~~~~~-~~~~~Il~~~l~~------------------------~~~~~~~~l~~la~ 340 (520)
...... +..++.+||. ..+.+++|+. +++..|+..+... ...++++.+++++.
T Consensus 159 lpe~~~-~~~aLldRF~-~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~ 236 (500)
T 3nbx_X 159 LPEADS-SLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFM 236 (500)
T ss_dssp CCCTTC-TTHHHHTTCC-EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred CCCccc-cHHHHHHHHH-HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHH
Confidence 432222 3468889995 4599999987 6778888765421 14578888888887
Q ss_pred HcC-------CCCCCHHHHHHHHHhhhc
Q psy17062 341 LEP-------PTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 341 ~~~-------~~~G~~r~al~~l~~a~~ 361 (520)
.+. ......|.++.+++.+..
T Consensus 237 l~~~lr~~r~~~~iS~R~~~~llr~A~A 264 (500)
T 3nbx_X 237 LRQQLDKLPDAPYVSDRRWKKAIRLLQA 264 (500)
T ss_dssp HHHHHHHCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCccchhHHHHHHHHHHH
Confidence 762 123467887777766543
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.45 E-value=1.4e-12 Score=130.47 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=125.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC------ChH
Q psy17062 137 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP------EPK 210 (520)
Q Consensus 137 ~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~------~~~ 210 (520)
.+..++||+.+++.|.+++.. +..++|+|++|+|||++++.+++.+ + +++++|.... +..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHH
Confidence 345689999999999998865 1689999999999999999999875 4 6777776542 455
Q ss_pred HHHHHHHHHHhc----------------CC-----CChHHHHHHHHHHHcCCCCceEEEEcCCccccc----cCh---HH
Q psy17062 211 RAYSRILELLLN----------------VD-----APPEQAKAMLERHFTRPHGPCVLLIDELDYLCN----KRQ---DV 262 (520)
Q Consensus 211 ~~~~~i~~~l~g----------------~~-----~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~----~~~---~~ 262 (520)
.++..+...+.. .. .........+...... ..+.+|+|||+|++.. ... ..
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE-LGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH-HSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc-cCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 555555443321 11 1122233333332221 1389999999999986 122 23
Q ss_pred HHHHHHhcCCCCCcEEEEEEEcCCCCchhh-----hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q psy17062 263 IYNILEYLNKPKSRLIILCIANTMDLPERT-----LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFHPDAVQ 336 (520)
Q Consensus 263 L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~-----l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~~~~l~ 336 (520)
|..+++.. .++.+|.++......... ....+..|+. ..+.+++++.++..+++...+... ..++++.+.
T Consensus 155 L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~-~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIA-GEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIE 229 (350)
T ss_dssp HHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHH
T ss_pred HHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 33444422 367777766543211111 1122334442 359999999999999999887643 346788888
Q ss_pred HHHHHcCCCCCCHHHHHHHHH
Q psy17062 337 LVARLEPPTSRSEIFCANHYT 357 (520)
Q Consensus 337 ~la~~~~~~~G~~r~al~~l~ 357 (520)
.+... +.|++.....++.
T Consensus 230 ~i~~~---tgG~P~~l~~~~~ 247 (350)
T 2qen_A 230 EAVEL---LDGIPGWLVVFGV 247 (350)
T ss_dssp HHHHH---HTTCHHHHHHHHH
T ss_pred HHHHH---hCCCHHHHHHHHH
Confidence 88887 5677765444443
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.44 E-value=4.5e-13 Score=136.40 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=76.7
Q ss_pred CceEEEEcCCcccccc------------ChHHHHHHHHhcC-------CCCCcEEEEEEE-----cCCCCchhhhhhhhh
Q psy17062 243 GPCVLLIDELDYLCNK------------RQDVIYNILEYLN-------KPKSRLIILCIA-----NTMDLPERTLKGKVS 298 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~------------~~~~L~~ll~~~~-------~~~~~v~vI~~t-----n~~~~~~~~l~~~l~ 298 (520)
...+|++||+|.+... .|+.|+.+++... ....++.+|+++ |..+ +.+.|.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-----lipel~ 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-----LIPELQ 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-----SCHHHH
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-----cchHHh
Confidence 3569999999999764 2457888888421 135678899887 3322 457899
Q ss_pred ccCCcceEEeCCCCHHHHHHHHHH-----------HHh--CC-CCCCHHHHHHHHHHcCC-----CCCCHHHHHHHHHhh
Q psy17062 299 SRMGLTRLMFKPYDHHQLQEIVQN-----------RLK--NN-NCFHPDAVQLVARLEPP-----TSRSEIFCANHYTNE 359 (520)
Q Consensus 299 sR~~~~~i~~~~~~~~~~~~Il~~-----------~l~--~~-~~~~~~~l~~la~~~~~-----~~G~~r~al~~l~~a 359 (520)
+||.+ +|.|++|+.++..+|+.. .+. .. ..+++++++.|++.... ..+.+|.+..++...
T Consensus 325 ~R~~i-~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~ 403 (444)
T 1g41_A 325 GRLPI-RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 403 (444)
T ss_dssp TTCCE-EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred cccce-eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHH
Confidence 99974 489999999999999941 111 11 57899999999986321 234555555555444
Q ss_pred h
Q psy17062 360 K 360 (520)
Q Consensus 360 ~ 360 (520)
.
T Consensus 404 ~ 404 (444)
T 1g41_A 404 M 404 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.41 E-value=1.3e-12 Score=157.76 Aligned_cols=180 Identities=16% Similarity=0.026 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChH
Q psy17062 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228 (520)
Q Consensus 149 ~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~ 228 (520)
++....|..++... .++++.||+|||||++++.+|+.+ +..++.++|.+..+...+ ..+
T Consensus 632 dr~~~tl~~Al~~~--~~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~l-g~~------------ 690 (2695)
T 4akg_A 632 LIGFATLTDSLHQK--YGGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVL-SRL------------ 690 (2695)
T ss_dssp HHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHH-HHH------------
T ss_pred HHHHHHHHHHHHhC--CCCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHh-hHH------------
Confidence 34444444433322 458899999999999999999999 999999999988764333 111
Q ss_pred HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHh----c---C----------CCCCcEEEEEEEcCCCCchh
Q psy17062 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEY----L---N----------KPKSRLIILCIANTMDLPER 291 (520)
Q Consensus 229 ~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~----~---~----------~~~~~v~vI~~tn~~~~~~~ 291 (520)
+.... ..+.+++|||++.+.....+.+.+.++. + . ..+..+.+++|.|+...-..
T Consensus 691 -----~~g~~---~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~ 762 (2695)
T 4akg_A 691 -----LVGIT---QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRS 762 (2695)
T ss_dssp -----HHHHH---HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSC
T ss_pred -----HHHHH---hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcc
Confidence 11111 2468999999999988776666433321 1 0 12335567777886322223
Q ss_pred hhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHcCC---CCCCHHHHHHHHHhhhc
Q psy17062 292 TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQ-------LVARLEPP---TSRSEIFCANHYTNEKK 361 (520)
Q Consensus 292 ~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~~~~l~-------~la~~~~~---~~G~~r~al~~l~~a~~ 361 (520)
.++..+.+||.. |.+..|+.+.+.+|+.....- .......+ .+.+.... |...+|....++..|+.
T Consensus 763 eLP~~Lk~~Fr~--v~m~~Pd~~~i~ei~l~s~Gf--~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 763 ELPENLKKSFRE--FSMKSPQSGTIAEMILQIMGF--EDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp CCCHHHHTTEEE--EECCCCCHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred cccHHHHhheEE--EEeeCCCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 467788899854 999999999999987654431 11222222 22223222 45578888777877765
No 84
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=2.2e-12 Score=129.22 Aligned_cols=199 Identities=14% Similarity=0.143 Sum_probs=121.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC-----CChH
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI-----PEPK 210 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~-----~~~~ 210 (520)
..+..++||+++++.|.+ +.. ..++|+|++|+|||++++.+++.+ ...++++++... .+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINEL------NLPYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHH------TCCEEEEEGGGGTTCSCCCHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhc------CCCEEEEEchhhccccCCCHH
Confidence 345678999999999888 643 589999999999999999999987 445678887654 3455
Q ss_pred HHHHHHHHHHhc-------------C-----------CCC----hHHHHHHHHHHHcCCC-CceEEEEcCCcccccc---
Q psy17062 211 RAYSRILELLLN-------------V-----------DAP----PEQAKAMLERHFTRPH-GPCVLLIDELDYLCNK--- 258 (520)
Q Consensus 211 ~~~~~i~~~l~g-------------~-----------~~~----~~~~~~~l~~~~~~~~-~~~vLiiDEid~l~~~--- 258 (520)
.++..+...+.. . ... .......+...+.... .+.+|+|||+|++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 555555443310 0 000 0001122222232222 4899999999999752
Q ss_pred -ChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhh-----hhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC-CCCC
Q psy17062 259 -RQDVIYNILEYLNKPKSRLIILCIANTMDLPERT-----LKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN-NCFH 331 (520)
Q Consensus 259 -~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~-----l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~-~~~~ 331 (520)
-...|..+.+.. .++.+|++++........ ....+..|+. ..+.+++++.++..+++...+... ...+
T Consensus 156 ~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~ 230 (357)
T 2fna_A 156 NLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF-STVELKPFSREEAIEFLRRGFQEADIDFK 230 (357)
T ss_dssp CCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC-EEEEECCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCcc-ceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233455555532 367777777653211111 1122334442 459999999999999999877532 2222
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHh
Q psy17062 332 PDAVQLVARLEPPTSRSEIFCANHYTN 358 (520)
Q Consensus 332 ~~~l~~la~~~~~~~G~~r~al~~l~~ 358 (520)
+. ..+... +.|++.....++..
T Consensus 231 ~~--~~i~~~---t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 231 DY--EVVYEK---IGGIPGWLTYFGFI 252 (357)
T ss_dssp CH--HHHHHH---HCSCHHHHHHHHHH
T ss_pred cH--HHHHHH---hCCCHHHHHHHHHH
Confidence 22 667776 66777655444443
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.33 E-value=1.5e-11 Score=148.62 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=102.7
Q ss_pred HHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHH
Q psy17062 152 HRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAK 231 (520)
Q Consensus 152 ~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 231 (520)
..++...+..+ .++||+||||||||++|+.++..+ .+..++.++++..++...+...+ .........
T Consensus 1257 ~~ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i-~~~~~~~~~----- 1323 (2695)
T 4akg_A 1257 EKIFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSAL-HRHTNYVTT----- 1323 (2695)
T ss_dssp HHHHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHH-HHHBCCEEE-----
T ss_pred HHHHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHH-HHHhhhccc-----
Confidence 33444433333 579999999999999997666543 16788889998887754433222 111110000
Q ss_pred HHHHHHHcC--CCCceEEEEcCCcccccc------ChHHHHHHHHhc---CCCC------CcEEEEEEEcCCC-Cchhhh
Q psy17062 232 AMLERHFTR--PHGPCVLLIDELDYLCNK------RQDVIYNILEYL---NKPK------SRLIILCIANTMD-LPERTL 293 (520)
Q Consensus 232 ~~l~~~~~~--~~~~~vLiiDEid~l~~~------~~~~L~~ll~~~---~~~~------~~v~vI~~tn~~~-~~~~~l 293 (520)
.-...+.. .++.+||||||++....+ ..+.|.++++.. .... .++.+|+++|+.. .-...+
T Consensus 1324 -~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l 1402 (2695)
T 4akg_A 1324 -SKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM 1402 (2695)
T ss_dssp -TTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCC
T ss_pred -cCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccC
Confidence 00000111 145689999999876554 245788888742 1111 3588999999875 222346
Q ss_pred hhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC
Q psy17062 294 KGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN 327 (520)
Q Consensus 294 ~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~ 327 (520)
.++|.+||.+ |.++.|+.+++..|+..++...
T Consensus 1403 ~~rllRrf~v--i~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1403 SERFTRHAAI--LYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CHHHHTTEEE--EECCCCTTTHHHHHHHHHHHHH
T ss_pred ChhhhheeeE--EEeCCCCHHHHHHHHHHHHHHH
Confidence 8899999954 9999999999999999888643
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.31 E-value=1.3e-11 Score=125.19 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=146.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 139 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 139 ~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
..++|....+.++.+.+.... ....+++|+|++||||+++++.+....... ..+++.+||..+... . +-+
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a--~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~---~~~fv~v~~~~~~~~--~---~~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS--CAECPVLITGESGVGKEVVARLIHKLSDRS---KEPFVALNVASIPRD--I---FEA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT--TCCSCEEEECSTTSSHHHHHHHHHHHSTTT---TSCEEEEETTTSCHH--H---HHH
T ss_pred hhhhhccHHhhHHHHHHHHhc--CCCCCeEEecCCCcCHHHHHHHHHHhcCCC---CCCeEEEecCCCCHH--H---HHH
Confidence 457888889999998888743 345568999999999999999998765332 568999999987531 1 234
Q ss_pred HHhcCCCChH-HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCC-
Q psy17062 219 LLLNVDAPPE-QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDL- 288 (520)
Q Consensus 219 ~l~g~~~~~~-~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~- 288 (520)
.++|.....- .....-...|.. ....+||||||+.|....|..|+.+++.... ....+.+|++||..-.
T Consensus 207 elfg~~~g~~tga~~~~~g~~~~-a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~ 285 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSSKEGFFEL-ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKE 285 (387)
T ss_dssp HHHCBCTTSSTTCCSCBCCHHHH-TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHH
T ss_pred HhcCCCCCCCCCcccccCCceee-CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHH
Confidence 5555431100 000000011111 2567999999999999999999999985311 1236778998886311
Q ss_pred --chhhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 289 --PERTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 289 --~~~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
....+...+..|+....|++||+.. +++..++.+.+... ..+++++++.+... .+.||+|...+++
T Consensus 286 ~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~--~wpGNvreL~~~i 363 (387)
T 1ny5_A 286 LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY--PWYGNVRELKNVI 363 (387)
T ss_dssp HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS--CCTTHHHHHHHHH
T ss_pred HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCCcHHHHHHHHH
Confidence 0112345677788777799999975 88888877766542 34789999998875 6899999999999
Q ss_pred Hhhhc
Q psy17062 357 TNEKK 361 (520)
Q Consensus 357 ~~a~~ 361 (520)
++++.
T Consensus 364 ~~~~~ 368 (387)
T 1ny5_A 364 ERAVL 368 (387)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.31 E-value=2.9e-12 Score=128.95 Aligned_cols=208 Identities=15% Similarity=0.173 Sum_probs=144.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 140 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 140 ~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++|....+.++...+..... ....++|+|++||||+.+++.+.+.... ...++.+||..+.... +.+.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~--~~~~vli~GesGtGKe~lAr~ih~~s~r----~~~fv~vnc~~~~~~~-----~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK--SKAPVLITGESGTGKEIVARLIHRYSGR----KGAFVDLNCASIPQEL-----AESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT--SCSCEEEECCTTSSHHHHHHHHHHHHCC----CSCEEEEESSSSCTTT-----HHHH
T ss_pred cccccchHHHHHHhhhhhhhc--cchhheEEeCCCchHHHHHHHHHHhccc----cCCcEEEEcccCChHH-----HHHH
Confidence 478888888888888877533 3445999999999999999999876522 2239999999875421 2344
Q ss_pred HhcCCCCh-HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC--------CCCcEEEEEEEcCCCCch
Q psy17062 220 LLNVDAPP-EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK--------PKSRLIILCIANTMDLPE 290 (520)
Q Consensus 220 l~g~~~~~-~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~--------~~~~v~vI~~tn~~~~~~ 290 (520)
++|..... ......-...|.. .....||||||+.|....|..|+.+++.... ....+.+|++||.. +..
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~-a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-l~~ 276 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLEL-ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN-LEE 276 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHH-TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC-HHH
T ss_pred hcCccccccCCcccccCChHhh-cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC-HHH
Confidence 44432110 0000000001111 2456899999999999999999999975321 12356789988853 211
Q ss_pred ----hhhhhhhhccCCcceEEeCCCCH--HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 291 ----RTLKGKVSSRMGLTRLMFKPYDH--HQLQEIVQNRLKNN--------NCFHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 291 ----~~l~~~l~sR~~~~~i~~~~~~~--~~~~~Il~~~l~~~--------~~~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..+...+..|+....|++||+.+ +++..++.+.+.+. ..+++++++.|... .|.||+|.+.+++
T Consensus 277 ~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpGNvreL~n~i 354 (368)
T 3dzd_A 277 EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ--EWKGNVRELKNLI 354 (368)
T ss_dssp HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC--CCTTHHHHHHHHH
T ss_pred HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC--CCCcHHHHHHHHH
Confidence 12345678888877799999988 88888888777543 45899999999875 5899999999999
Q ss_pred Hhhhcc
Q psy17062 357 TNEKKS 362 (520)
Q Consensus 357 ~~a~~~ 362 (520)
++++..
T Consensus 355 ~~~~~~ 360 (368)
T 3dzd_A 355 ERAVIL 360 (368)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 88
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=1.2e-12 Score=139.89 Aligned_cols=218 Identities=14% Similarity=0.053 Sum_probs=125.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcCC-----------CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE----c
Q psy17062 138 PESLPCREAEFQSIHRFLLSKISQST-----------TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM----N 202 (520)
Q Consensus 138 p~~l~gr~~ei~~l~~~L~~~~~~~~-----------~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v----~ 202 (520)
...++|++.....+...+ .++. ..++||+||||||||++|+++++.+ +...+.. +
T Consensus 294 ~~~I~G~e~vk~al~~~l----~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~------~r~~~~~~~~~~ 363 (595)
T 3f9v_A 294 APSIYGHWELKEALALAL----FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA------PRAVYTTGKGST 363 (595)
T ss_dssp SSTTSCCHHHHHHHTTTT----TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC------SCEECCCTTCST
T ss_pred cchhcChHHHHHHHHHHH----hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC------CCceecCCCccc
Confidence 345789887655443332 2221 1279999999999999999999876 3332221 1
Q ss_pred cccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCC----------
Q psy17062 203 ALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK---------- 272 (520)
Q Consensus 203 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~---------- 272 (520)
+..+.... +.....|...... ..+.. ....||||||+|.+....++.|+++|+....
T Consensus 364 ~~~l~~~~-----~~~~~~g~~~~~~---G~l~~-----A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~ 430 (595)
T 3f9v_A 364 AAGLTAAV-----VREKGTGEYYLEA---GALVL-----ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAK 430 (595)
T ss_dssp TTTSEEEC-----SSGGGTSSCSEEE---CHHHH-----HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEE
T ss_pred ccccccee-----eeccccccccccC---CeeEe-----cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEE
Confidence 11110000 0000001000000 00000 1467999999999999999999999985321
Q ss_pred CCCcEEEEEEEcCCCCch---------hhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCC----------------
Q psy17062 273 PKSRLIILCIANTMDLPE---------RTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNN---------------- 327 (520)
Q Consensus 273 ~~~~v~vI~~tn~~~~~~---------~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~---------------- 327 (520)
...++.+|+++|...... ..+.+++.+||+...+..+.++.+ ...|+++.+...
T Consensus 431 ~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~ 509 (595)
T 3f9v_A 431 LNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRK 509 (595)
T ss_dssp ECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHH
T ss_pred ecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHH
Confidence 135678999999863111 036778999997654555655656 777777666531
Q ss_pred ----------CCCCHHHHHHHHHHcC------------CCCCCHHHHHHHHHhhhccCCCCceecccccchhhhhccccc
Q psy17062 328 ----------NCFHPDAVQLVARLEP------------PTSRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVI 385 (520)
Q Consensus 328 ----------~~~~~~~l~~la~~~~------------~~~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~ 385 (520)
+.+++++.+.|...+. ...+++|.+..+++.+... |.......++.+++.
T Consensus 510 ~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~--------A~l~~~~~V~~~dv~ 581 (595)
T 3f9v_A 510 YIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAY--------AKMALKAEVTREDAE 581 (595)
T ss_dssp HHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHH--------HHTTSSCCSSHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHH--------HHHhCcCCCCHHHHH
Confidence 2556666666666643 2455677766666665441 223333445555554
Q ss_pred cc
Q psy17062 386 GK 387 (520)
Q Consensus 386 ~a 387 (520)
.|
T Consensus 582 ~A 583 (595)
T 3f9v_A 582 RA 583 (595)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.18 E-value=3.9e-11 Score=128.88 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=83.2
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcC------------------CCCCcEEEEEEEcCCCCchhhhhhhhhccCCc
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLN------------------KPKSRLIILCIANTMDLPERTLKGKVSSRMGL 303 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------------------~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~ 303 (520)
..+.+|||||++.|....++.|+.+|+... ....++.||+++|.. ....+.+.|.+||..
T Consensus 200 a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~--~~~~l~~~l~~R~~v 277 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD--TVDKMHPALRSRIRG 277 (604)
T ss_dssp TTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH--HHHHSCHHHHHHHHH
T ss_pred cCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH--HHhhcCHHHHHHhhc
Confidence 356799999999998888999999997431 112467899999874 112467889999853
Q ss_pred --ceEEeCCC---CHHHHHHHHHHHHh------CCCCCCHHHHHHHHHHcCCCCC-------CHHHHHHHHHhhhc
Q psy17062 304 --TRLMFKPY---DHHQLQEIVQNRLK------NNNCFHPDAVQLVARLEPPTSR-------SEIFCANHYTNEKK 361 (520)
Q Consensus 304 --~~i~~~~~---~~~~~~~Il~~~l~------~~~~~~~~~l~~la~~~~~~~G-------~~r~al~~l~~a~~ 361 (520)
..+.|+.. +.+.+..++....+ ....+++++++.|.+.+.+..| ++|.+.++++.|..
T Consensus 278 ~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~ 353 (604)
T 3k1j_A 278 YGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGD 353 (604)
T ss_dssp HSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHH
T ss_pred cceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHH
Confidence 23565533 44556666654433 2257899999999987654455 69999999998764
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.16 E-value=5e-10 Score=136.11 Aligned_cols=180 Identities=13% Similarity=0.028 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChH
Q psy17062 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228 (520)
Q Consensus 149 ~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~ 228 (520)
++.+-.|..++.... +..+.||+|||||.+++.+++.+ +..++.++|.+..+...+ .++
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~-g~i------------ 649 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAM-SRI------------ 649 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHH-HHH------------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHH-HHH------------
Confidence 333444444333333 35689999999999999999999 899999999887653311 111
Q ss_pred HHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhc-----------CC-------CCCcEEEEEEEcCCCCc-
Q psy17062 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYL-----------NK-------PKSRLIILCIANTMDLP- 289 (520)
Q Consensus 229 ~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~-----------~~-------~~~~v~vI~~tn~~~~~- 289 (520)
+.... ..+.+.+|||++.+......++.+.+... .. .+..+.+++|.|+ ...
T Consensus 650 -----~~G~~---~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~g 720 (3245)
T 3vkg_A 650 -----FVGLC---QCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAG 720 (3245)
T ss_dssp -----HHHHH---HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGG
T ss_pred -----HhhHh---hcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccC
Confidence 11111 25779999999999887666655544310 00 1234567777775 322
Q ss_pred hhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCCCC-HHHH-------HHHHHHcC---CCCCCHHHHHHHHHh
Q psy17062 290 ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFH-PDAV-------QLVARLEP---PTSRSEIFCANHYTN 358 (520)
Q Consensus 290 ~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~~~-~~~l-------~~la~~~~---~~~G~~r~al~~l~~ 358 (520)
...++..+..||.. |.+..|+.+.+.+|+..... ..+ .... +.+.+.+. .|.-.+|....+|..
T Consensus 721 r~eLP~nLk~lFr~--v~m~~Pd~~~i~ei~L~s~G---f~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~ 795 (3245)
T 3vkg_A 721 RSNLPDNLKKLFRS--MAMIKPDREMIAQVMLYSQG---FKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVS 795 (3245)
T ss_dssp CCCSCHHHHTTEEE--EECCSCCHHHHHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHH
T ss_pred cccChHHHHhhcEE--EEEeCCCHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 22467789999965 99999999999998764332 111 1111 12222222 256678888888888
Q ss_pred hhccC
Q psy17062 359 EKKSK 363 (520)
Q Consensus 359 a~~~~ 363 (520)
|+..+
T Consensus 796 AG~lk 800 (3245)
T 3vkg_A 796 AGGIK 800 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.06 E-value=2.9e-09 Score=129.48 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=102.6
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHH
Q psy17062 153 RFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKA 232 (520)
Q Consensus 153 ~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~ 232 (520)
.++...+..+ .++||+||+|||||.++..++..+. +..++.++++..+++..+...+-..+..... ..
T Consensus 1295 ~ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~-~~---- 1362 (3245)
T 3vkg_A 1295 DVLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRT-PS---- 1362 (3245)
T ss_dssp HHHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEEC-TT----
T ss_pred HHHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEec-cC----
Confidence 3444444433 4599999999999998877665441 5678899999988865554443221100000 00
Q ss_pred HHHH-HHcCC--CCceEEEEcCCcccccc------ChHHHHHHHHhc---CCC------CCcEEEEEEEcCCCC-chhhh
Q psy17062 233 MLER-HFTRP--HGPCVLLIDELDYLCNK------RQDVIYNILEYL---NKP------KSRLIILCIANTMDL-PERTL 293 (520)
Q Consensus 233 ~l~~-~~~~~--~~~~vLiiDEid~l~~~------~~~~L~~ll~~~---~~~------~~~v~vI~~tn~~~~-~~~~l 293 (520)
.. .+... ++..||||||++.-..+ ..+.|.++++.. ... -.++.+|+++|++.. -...+
T Consensus 1363 --~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l 1440 (3245)
T 3vkg_A 1363 --GETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQL 1440 (3245)
T ss_dssp --SCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCC
T ss_pred --CCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccC
Confidence 00 01111 34679999999876654 245788888742 211 136789999998742 22347
Q ss_pred hhhhhccCCcceEEeCCCCHHHHHHHHHHHHhC
Q psy17062 294 KGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN 326 (520)
Q Consensus 294 ~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~ 326 (520)
.++|.+||.+ +.++.|+.+++..|+...+..
T Consensus 1441 ~~Rf~r~F~v--i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1441 THRFLRHAPI--LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CHHHHTTCCE--EECCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHhhceE--EEeCCCCHHHHHHHHHHHHHH
Confidence 8899999976 999999999999998776653
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.04 E-value=3.3e-09 Score=105.81 Aligned_cols=171 Identities=11% Similarity=0.040 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
+..+.+||+|+.|+||++.++.+++.+.........++.++. . .+...+...+ .....|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~----------------~~~plf--- 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-N-TDWNAIFSLC----------------QAMSLF--- 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-T-CCHHHHHHHH----------------HHHHHC---
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-C-CCHHHHHHHh----------------cCcCCc---
Confidence 456789999999999999999999988765211223444443 1 2222211110 001122
Q ss_pred CCceEEEEcCCcc-ccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc--hhhhhhhhhccCCcceEEeCCCCHHHHHH
Q psy17062 242 HGPCVLLIDELDY-LCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP--ERTLKGKVSSRMGLTRLMFKPYDHHQLQE 318 (520)
Q Consensus 242 ~~~~vLiiDEid~-l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~--~~~l~~~l~sR~~~~~i~~~~~~~~~~~~ 318 (520)
....|++|||+|. +....++.|...++.+ ...+++|.+++..+.. ...+...+.+|+.. +.|.+++.+++..
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~--~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRSVQ--VTCQTPEQAQLPR 149 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE--EEECCCCTTHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCceE--EEeeCCCHHHHHH
Confidence 4678999999999 8877788888888744 3456666666554321 12356788899854 9999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhhhc
Q psy17062 319 IVQNRLKNN-NCFHPDAVQLVARLEPPTSRSEIFCANHYTNEKK 361 (520)
Q Consensus 319 Il~~~l~~~-~~~~~~~l~~la~~~~~~~G~~r~al~~l~~a~~ 361 (520)
++...++.. ..+++++++.|+.. ..||++.+++.++..+.
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~---~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYC---YEGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHS---STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH---hchHHHHHHHHHHHHHH
Confidence 999998765 57899999999997 78999999999887765
No 93
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.5e-10 Score=115.87 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=31.3
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+...++..++.|||||||||||||++|+|||++++-
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 344566899999999999999999999999998753
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=5.5e-10 Score=97.24 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
.+..++|+||+|+|||+++++++..+... +...+++++.++... ..+ .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------------------------~~~---~ 82 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------------------------DAA---F 82 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------------------------GGG---G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------------------------HHH---h
Confidence 56789999999999999999999988753 566788888766431 011 2
Q ss_pred CceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC-CCCchhhhhhhhhccCCc
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT-MDLPERTLKGKVSSRMGL 303 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~-~~~~~~~l~~~l~sR~~~ 303 (520)
.+.+|||||++.+....++.|+.+++........ .+|.+++. +..+.. . +++.+|+..
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~-~iiits~~~p~~l~~-~-~~L~SRl~~ 141 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKG-FLLLGSEYTPQQLVI-R-EDLRTRMAY 141 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCC-EEEEEESSCTTTSSC-C-HHHHHHGGG
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCc-EEEEECCCCHHHccc-c-HHHHHHHhc
Confidence 5789999999998876788888888765322222 24446663 333332 3 788888854
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=5.7e-10 Score=100.48 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
+...++.+.+++... ....+.+++|+||+|+|||+++++++..+.... +..++++++.++ +..+...+...
T Consensus 19 ~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~~~------~~~~~~~~~~~ 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTKDL------IFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHHHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHHHH------HHHHHHHhcCc
Confidence 445555555555543 223467899999999999999999999986433 445555554432 22222222111
Q ss_pred CCChHHHHHHHHHHHcCCCCceEEEEcCCcc--ccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 224 DAPPEQAKAMLERHFTRPHGPCVLLIDELDY--LCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~--l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
... ..+... ..+.+|||||++. +....+..|+.+++... ..+..+|.+||...
T Consensus 90 ~~~-----~~~~~~----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 90 KDT-----KFLKTV----LNSPVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYSL 144 (180)
T ss_dssp CCS-----HHHHHH----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCCS
T ss_pred hHH-----HHHHHh----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCCh
Confidence 111 112222 2688999999984 44556677888887542 12345666777653
No 96
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=8.6e-10 Score=111.82 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=30.9
Q ss_pred HhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 480 LSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 480 ~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
...++..++.|||||||||||||++|+|||+++.-
T Consensus 235 f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp HHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred HHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 34566899999999999999999999999998754
No 97
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=8.2e-10 Score=112.29 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=30.2
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++..++.|||||||||||||++|+|||+++.-
T Consensus 208 ~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456899999999999999999999999998753
No 98
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=7.7e-10 Score=112.41 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.2
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++..++.|||||||||||||++|+|||+++.-
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999998753
No 99
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=9.2e-10 Score=110.50 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.2
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++..++.|||||||||||||++|+|||+++.-
T Consensus 209 ~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 209 EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999998753
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.2e-09 Score=110.78 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=30.2
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..++..++.|||||||||||||++|+|||++++.
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999999999998753
No 101
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.87 E-value=4.4e-08 Score=105.10 Aligned_cols=188 Identities=15% Similarity=0.129 Sum_probs=109.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHH---HHHhCCCeEEEEEccccCCChHHH
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL---KQEIGDKFVYVEMNALSIPEPKRA 212 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l---~~~~~~~~~~i~v~~~~~~~~~~~ 212 (520)
..+..++||+.++++|.+.|... .+....++|+|++|+|||++|..+++.. .... ...+++++.... +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f--~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF--PGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC--TTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC--CCceEEEECCCC-chHHH
Confidence 44567999999999999998752 2345679999999999999999998654 2221 112444544433 23333
Q ss_pred HHHH---HHHHhc-------CCCChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 213 YSRI---LELLLN-------VDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 213 ~~~i---~~~l~g-------~~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
+..+ +..+.. ...........+...+....++.+||||+++.. . .+++. ..+..||.|
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~----~l~~l---~~~~~ilvT 263 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----W----VLKAF---DSQCQILLT 263 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----H----HHHTT---CSSCEEEEE
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----H----HHHHh---cCCCeEEEE
Confidence 3333 333321 011233445555555554447899999999763 1 23333 234556666
Q ss_pred EcCCCCchhhhhhhhhccCCcceEE-eCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCCCHH
Q psy17062 283 ANTMDLPERTLKGKVSSRMGLTRLM-FKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350 (520)
Q Consensus 283 tn~~~~~~~~l~~~l~sR~~~~~i~-~~~~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~~~~~G~~r 350 (520)
|+...... ..... ...+. +.+++.++..+++...+.......++....|++. +.|.+.
T Consensus 264 sR~~~~~~-----~~~~~--~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~---~~G~PL 322 (591)
T 1z6t_A 264 TRDKSVTD-----SVMGP--KYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKE---CKGSPL 322 (591)
T ss_dssp ESCGGGGT-----TCCSC--EEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHH---HTTCHH
T ss_pred CCCcHHHH-----hcCCC--ceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHH---hCCCcH
Confidence 76543211 11111 11132 2589999999999988764211124566778877 445543
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.87 E-value=2e-08 Score=117.87 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC--------ChHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA--------PPEQAKAM 233 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~--------~~~~~~~~ 233 (520)
..+.+++|+|+||||||+++.+++.+.... +...++++..+..++.. ..-.|-.. ........
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ee~~~~L~------a~~~G~dl~~l~~~~pd~~e~~~~ 1149 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQPDTGEQALE 1149 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH------HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEccccHHHHH------HHHcCCChhHheeecCcchHHHHH
Confidence 356789999999999999999999988766 67788888887765433 11122211 11111222
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+...+.....+.+||||++..+..
T Consensus 1150 i~~~l~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1150 ICDALARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHhCCCCEEEECCcccccc
Confidence 222333335799999999999854
No 103
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.86 E-value=4.5e-09 Score=96.40 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC
Q psy17062 146 AEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 146 ~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~ 225 (520)
..++.+..++........+.+++|+||+|||||++++++++.+... +..++++++..+ ...+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~-- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVPEL------FRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHHHH------HHHHHHC---C--
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhHHH------HHHHHHHhccc--
Confidence 3445555555442111223789999999999999999999998654 566777777542 12221111111
Q ss_pred ChHHHHHHHHHHHcCCCCceEEEEcCCccccc--cChH-HHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 226 PPEQAKAMLERHFTRPHGPCVLLIDELDYLCN--KRQD-VIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~--~~~~-~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
..... +. .+. .+.+|||||++.... ..+. .|..+++... ..+..+|+++|.
T Consensus 105 ~~~~~---~~-~~~---~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~--~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEK---LD-YIK---KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRM--FENLPTFFTSNF 158 (202)
T ss_dssp CCHHH---HH-HHH---HSSEEEEEEECCC---CCGGGTTHHHHHHHHH--HTTCCEEEEESS
T ss_pred hHHHH---HH-Hhc---CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHH--hCCCCEEEEcCC
Confidence 11111 11 121 345999999976543 3355 4455665431 123346667775
No 104
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.2e-09 Score=104.81 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=53.0
Q ss_pred cCCCCCCCC-CCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 456 LHLSRVPES-LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 456 l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
|..++.+.. +++|++++..+..++...+....+.++|||||||||||+++++|+++|.+..
T Consensus 12 l~~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 12 IRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred hhhccCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 333344433 8999999999999999999999999999999999999999999999998653
No 105
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.81 E-value=1.6e-08 Score=117.43 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhc---------CCCChHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLN---------VDAPPEQAKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g---------~~~~~~~~~~~ 233 (520)
++..++|+|+||+|||+++..++..+... +..+++++........ + ..-.| ......+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~ql--~----A~~lGvd~~~L~i~~~~~leei~~~ 801 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI--Y----ARKLGVDIDNLLCSQPDTGEQALEI 801 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH--H----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHHH--H----HHHcCCChhheEEecCCcHHHHHHH
Confidence 45689999999999999999999988764 5577888877665432 1 22223 12233444444
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
++..... ..+.+||||.++.+..
T Consensus 802 l~~lv~~-~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 802 CDALARS-GAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHHHH-TCCSEEEESCSTTCCC
T ss_pred HHHHHHc-cCCCEEEEechhhhcc
Confidence 4433322 4789999999999874
No 106
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.74 E-value=1.6e-07 Score=99.62 Aligned_cols=188 Identities=12% Similarity=0.116 Sum_probs=113.6
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHH----HHHHHhCCCeEEEEEccccCC--ChHHHHHH
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMR----KLKQEIGDKFVYVEMNALSIP--EPKRAYSR 215 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~----~l~~~~~~~~~~i~v~~~~~~--~~~~~~~~ 215 (520)
+||+.++++|.++|... .......+.|+|+.|+|||+||+.+++ .+.... -..++++..... +...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY---DSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB---SEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC---CcEEEEEECCCCCCCHHHHHHH
Confidence 49999999999999653 233456789999999999999999996 232211 134456555443 57788888
Q ss_pred HHHHHhcCCC----------ChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 216 ILELLLNVDA----------PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 216 i~~~l~g~~~----------~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
|+.++.+... ........+...+.. ++..+||||+++.... + .+.. ..+..||.||+.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~-----~-~~~~-----~~gs~ilvTTR~ 274 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEET-----I-RWAQ-----ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHH-----H-HHHH-----HTTCEEEEEESB
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchh-----h-cccc-----cCCCEEEEEcCC
Confidence 8888865411 112234455555542 1389999999988532 1 1111 124456666765
Q ss_pred CCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHcCCCCCCHHHHHHHH
Q psy17062 286 MDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNC--FHPDAVQLVARLEPPTSRSEIFCANHY 356 (520)
Q Consensus 286 ~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~~~l~~~~~--~~~~~l~~la~~~~~~~G~~r~al~~l 356 (520)
..... .. . .....+.+++++.++..+++..+...... -..+....|++. +.|.+.. +.++
T Consensus 275 ~~v~~-----~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~---c~GlPLA-l~~~ 336 (549)
T 2a5y_B 275 VEISN-----AA-S-QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIEL---SSGNPAT-LMMF 336 (549)
T ss_dssp GGGGG-----GC-C-SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHH---HTTCHHH-HHHH
T ss_pred HHHHH-----Hc-C-CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH---hCCChHH-HHHH
Confidence 33211 11 0 01134899999999999999987543211 012244556665 4555543 3344
No 107
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.72 E-value=5.9e-09 Score=102.18 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHH-HHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC
Q psy17062 145 EAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK-QEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV 223 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~-~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~ 223 (520)
...+..+.+++... ......+++|+||+|||||+++.++++.+. .. +..++++++..+ +..+...
T Consensus 134 ~~~~~~~~~~i~~~-~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~~l----------~~~l~~~ 199 (308)
T 2qgz_A 134 MEAFSAILDFVEQY-PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFPSF----------AIDVKNA 199 (308)
T ss_dssp HHHHHHHHHHHHHC-SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHHHH----------HHHHHCC
T ss_pred HHHHHHHHHHHHhc-cccCCceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHHHH----------HHHHHHH
Confidence 33444555555542 112357899999999999999999999987 54 566777776542 2333221
Q ss_pred CCChHHHHHHHHHHHcCCCCceEEEEcCCccccc--cChH-HHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 224 DAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCN--KRQD-VIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~--~~~~-~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
.. .......+. .+ ....+|||||++.... ..++ +|..+++... ..+..+|++||.
T Consensus 200 ~~-~~~~~~~~~-~~---~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~--~~~~~~IitSN~ 257 (308)
T 2qgz_A 200 IS-NGSVKEEID-AV---KNVPVLILDDIGAEQATSWVRDEVLQVILQYRM--LEELPTFFTSNY 257 (308)
T ss_dssp CC-----CCTTH-HH---HTSSEEEEETCCC------CTTTTHHHHHHHHH--HHTCCEEEEESS
T ss_pred hc-cchHHHHHH-Hh---cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHH--HCCCcEEEECCC
Confidence 10 000001111 11 2567999999965433 3344 4555776431 113357777885
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.68 E-value=5e-07 Score=105.23 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=114.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEEccccCCC--hHH
Q psy17062 135 SRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG-DKFVYVEMNALSIPE--PKR 211 (520)
Q Consensus 135 ~~~p~~l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~-~~~~~i~v~~~~~~~--~~~ 211 (520)
...+..++||++++++|.+.|... ......+.|+|+.|+|||+||+.+++....... ....+++++...... ...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL--NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT--TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhc--cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 344567999999999999999652 344567889999999999999999876432211 122334555444222 233
Q ss_pred HHHHHHHHHhcCC-------CChHHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEc
Q psy17062 212 AYSRILELLLNVD-------APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIAN 284 (520)
Q Consensus 212 ~~~~i~~~l~g~~-------~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn 284 (520)
.+..++..+.... .......+.+...+....+..+||||+++... .++.. ..+..||.||+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~---~~~~~ilvTtR 265 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAF---DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTT---CSSCEEEEEES
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhh---cCCCEEEEEcC
Confidence 3555555554322 12344556666666554558999999998652 12211 23445677777
Q ss_pred CCCCchhhhhhhhhccCCcceEEeCC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHc
Q psy17062 285 TMDLPERTLKGKVSSRMGLTRLMFKP-YDHHQLQEIVQNRLKNNNCFHPDAVQLVARLE 342 (520)
Q Consensus 285 ~~~~~~~~l~~~l~sR~~~~~i~~~~-~~~~~~~~Il~~~l~~~~~~~~~~l~~la~~~ 342 (520)
........ ... ...+.+++ ++.++-.+++..+......-.++....|++.+
T Consensus 266 ~~~~~~~~-----~~~--~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 266 DKSVTDSV-----MGP--KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 317 (1249)
T ss_dssp STTTTTTC-----CSC--BCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT
T ss_pred CHHHHHhh-----cCC--ceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh
Confidence 65432211 111 13478886 99999999999887543222345567777773
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.65 E-value=3.6e-08 Score=88.93 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE-ccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM-NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPH 242 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v-~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~~ 242 (520)
.++++|+||||||||++|.++++.+ .-.++.+ +.... . .+....
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l------~g~i~~fans~s~-----------------------f------~l~~l~ 102 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI------QGAVISFVNSTSH-----------------------F------WLEPLT 102 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH------TCEECCCCCSSSC-----------------------G------GGGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh------CCCeeeEEeccch-----------------------h------hhcccC
Confidence 3579999999999999999999988 3333222 11110 0 011112
Q ss_pred CceEEEEcCCccccccC-hHHHHHHHHhcC----CCC------CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCC
Q psy17062 243 GPCVLLIDELDYLCNKR-QDVIYNILEYLN----KPK------SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKP 310 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~-~~~L~~ll~~~~----~~~------~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~ 310 (520)
...||+|||++.-.... +..+..+++... ..+ ....+|.|||..-..+. ...++.||+.. +.|+.
T Consensus 103 ~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~-~~~~L~SRi~~--f~F~~ 178 (212)
T 1tue_A 103 DTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDN-RWPYLESRITV--FEFPN 178 (212)
T ss_dssp TCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSS-SCHHHHTSCEE--EECCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccccc-chhhhhhhEEE--EEcCC
Confidence 34599999998543221 345777777531 111 12457778886432222 23678899854 77773
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.57 E-value=3.9e-08 Score=99.35 Aligned_cols=67 Identities=31% Similarity=0.464 Sum_probs=58.7
Q ss_pred HHHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 449 LQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 449 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+.+.++.+.+.+.|..+.|++.++..+...+...+....+.+++||||||||||++|+++++++.+.
T Consensus 5 ~f~~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 5 IFRKRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp SBSCHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred hhhCHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3445777888899999999999999999888777667788899999999999999999999999765
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.52 E-value=4.9e-08 Score=98.66 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred hHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 452 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 452 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+..+...+.|..+.|++.++..+...+...+....+..++||||||||||++|+++++++.+.
T Consensus 9 ~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 9 PKVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp TTTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred cHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3445555567788999999999999999888777778899999999999999999999998765
No 112
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.51 E-value=1.2e-07 Score=95.94 Aligned_cols=216 Identities=13% Similarity=0.004 Sum_probs=121.7
Q ss_pred CCchHHHHHHHHHHHHHHhhcCC-----CCeEEEEcCCCCcHHHHHHHH-HHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQST-----TGCMYISGVPGTGKTATVHAV-MRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~-----~~~lLl~G~~GtGKT~la~~l-a~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
++|++.....|.-.+ .++. ..++||.|+||+ ||.+++++ ++.+ .+.++..+. ..+..
T Consensus 215 I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-------pR~~ft~g~-~ss~~---- 277 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-------PRGVYVDLR-RTELT---- 277 (506)
T ss_dssp STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-------SSEEEEEGG-GCCHH----
T ss_pred cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-------CCeEEecCC-CCCcc----
Confidence 778876543333333 2221 127999999999 99999999 6543 222333222 11111
Q ss_pred HHHHHHhcCCCChHHHHHHHH-HHHcCCCCceEEEEcCCccccccChHHHHHHHHhcC------CCCCcEEEEEEEcCCC
Q psy17062 215 RILELLLNVDAPPEQAKAMLE-RHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN------KPKSRLIILCIANTMD 287 (520)
Q Consensus 215 ~i~~~l~g~~~~~~~~~~~l~-~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~------~~~~~v~vI~~tn~~~ 287 (520)
.+.+. .... ....++ ..+.. ....++||||++.+....+..|++.|+... ....++.||+++|+..
T Consensus 278 ----gLt~s-~r~~-tG~~~~~G~l~L-AdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 278 ----DLTAV-LKED-RGWALRAGAAVL-ADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ----HHSEE-EEES-SSEEEEECHHHH-TTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred ----CceEE-EEcC-CCcccCCCeeEE-cCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 11111 0000 000000 00000 356899999999999999999999998532 1245788999999876
Q ss_pred Cc-------hhhhhhhhhccCCcceEEeCC-------------CCHHHHHHHHHHHH-hC-CCCCCHHHHHHHHHHcC--
Q psy17062 288 LP-------ERTLKGKVSSRMGLTRLMFKP-------------YDHHQLQEIVQNRL-KN-NNCFHPDAVQLVARLEP-- 343 (520)
Q Consensus 288 ~~-------~~~l~~~l~sR~~~~~i~~~~-------------~~~~~~~~Il~~~l-~~-~~~~~~~~l~~la~~~~-- 343 (520)
.. ...+..++.+||+...+.+.. ++.+++.+++...- .. .+.+++++.++|...+.
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~t 430 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETR 430 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHH
Confidence 11 114678899999764333333 34455555555433 12 26778888877765432
Q ss_pred -------------CCCCCHHHHHHHHHhhhccCCCCceecccccchhhhhcccccccc
Q psy17062 344 -------------PTSRSEIFCANHYTNEKKSKSKYWDWVSSSSDEEEKEENHVIGKL 388 (520)
Q Consensus 344 -------------~~~G~~r~al~~l~~a~~~~~~~~~~~a~~~~~~~~~~~~v~~a~ 388 (520)
...-.+|..+.+++.+.. .|.....+.++.+++..+.
T Consensus 431 R~~~~~~~~~~~~~~giSpR~leaLiRlA~A--------~A~L~gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 431 REEVEERLGMGLPTLPVTRRQLESVERLAKA--------HARMRLSDDVEPEDVDIAA 480 (506)
T ss_dssp HHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH--------HHHHTTCSEECHHHHHHHH
T ss_pred hcCcccccccccccccccHHHHHHHHHHHHH--------HHHHcCcCCCCHHHHHHHH
Confidence 123356776666665544 2444445566666655553
No 113
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.49 E-value=9.4e-08 Score=94.25 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHHHHhhhc--------CCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~--------~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
++.|.+.....+...+...+. ..++.+||||||||||||++|++||+++
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455556555555554433222 4567899999999999999999999987
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.46 E-value=2.6e-06 Score=80.42 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhcC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh
Q psy17062 150 SIHRFLLSKISQS--TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP 227 (520)
Q Consensus 150 ~l~~~L~~~~~~~--~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~ 227 (520)
.+..++...+... +.++++|+||||||||+++.++++.+ .. +..++..... .
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~------~l-~G~vn~~~~~-----------------f-- 141 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV------PF-YGCVNWTNEN-----------------F-- 141 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS------SC-EEECCTTCSS-----------------C--
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh------cc-cceeeccccc-----------------c--
Confidence 4455555555543 24689999999999999999999865 33 2333332110 0
Q ss_pred HHHHHHHHHHHcCCCCceEEEEcCCccccccChHHHHHHHHhc----CCC------CCcEEEEEEEcCCCCc-------h
Q psy17062 228 EQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYL----NKP------KSRLIILCIANTMDLP-------E 290 (520)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~----~~~------~~~v~vI~~tn~~~~~-------~ 290 (520)
.+.......|++.||.... ....+.+..+++.. ... -.+..+|.+||..-.. .
T Consensus 142 ---------~l~~~~~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s 211 (267)
T 1u0j_A 142 ---------PFNDCVDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT 211 (267)
T ss_dssp ---------TTGGGSSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE
T ss_pred ---------ccccccccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc
Confidence 1112234557777777655 44556777888622 111 1345567778862211 0
Q ss_pred hhhhhhhhccCCcceEEeC--------CCCHHHHHHHHHHH
Q psy17062 291 RTLKGKVSSRMGLTRLMFK--------PYDHHQLQEIVQNR 323 (520)
Q Consensus 291 ~~l~~~l~sR~~~~~i~~~--------~~~~~~~~~Il~~~ 323 (520)
......|.+|+.. +.|+ +++.++....+...
T Consensus 212 ~~~~~~L~sR~~~--f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 212 FEHQQPLQDRMFK--FELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp CTTHHHHHTTEEE--EECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred hhhhHHHhhhEEE--EECCCcCCcccCCCCHHHHHHHHHHH
Confidence 1234678999854 8898 89999999999865
No 115
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=1.2e-07 Score=91.81 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS---------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|.+..+..+...+...+. ..++.++|||||||||||++|++||+++.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4577788877777766654332 47888999999999999999999998864
No 116
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.45 E-value=1.4e-07 Score=92.98 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|.+.....+...+...+ ...++.+||||||||||||++|++||+++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345666666666665553222 245678999999999999999999999864
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.44 E-value=1.4e-07 Score=95.16 Aligned_cols=67 Identities=33% Similarity=0.534 Sum_probs=57.4
Q ss_pred HHhHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 450 QLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
...++.+...+.|..+.||+.++..+...+...+....+..++||||||||||++|+++++.+....
T Consensus 7 ~~~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 7 FINREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp BSCGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred ccchhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3456667778889999999999999988887766677788999999999999999999999987654
No 118
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.44 E-value=1.6e-07 Score=97.25 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
...+.|++.....+...+..... ..++.++|||||||||||++|++||+++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45678888887776655543333 45668999999999999999999999985
No 119
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.43 E-value=1.8e-07 Score=91.28 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHHHHHHh---------hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLS---------KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~---------~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|.+.....+...+.. .++..++.+||||||||||||++|++||+++.
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 455566655555555443 23467888999999999999999999998764
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=2.4e-07 Score=93.59 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=54.6
Q ss_pred hHhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCC--cEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 452 ARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTG--CMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 452 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+..+...+.|..+.||+.++..+..++...+....+. .++||||||||||++|++++..+..
T Consensus 6 ~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 6 DDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp CGGGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35567777888999999999999999998877776767 8999999999999999999998754
No 121
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=90.56 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=28.3
Q ss_pred hhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 481 ~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++...+.|+|||||||||||+||++||.++.
T Consensus 37 ~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 37 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 445567888899999999999999999998753
No 122
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.38 E-value=1.6e-07 Score=91.26 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=27.0
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++|.++|||||||||||++|++||+++.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999999874
No 123
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.36 E-value=2.6e-07 Score=92.40 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHHHHhhh--------cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~--------~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|.+.....+...+...+ ...++.+||||||||||||++|++||+++.
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666666666665543221 246678899999999999999999999874
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=4.7e-07 Score=81.38 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.++..+...+.. ..+.++|||||||||||++|+++|+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678898888887766543 46678999999999999999999999865
No 125
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=5.8e-07 Score=85.56 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHHHhh--------hcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSK--------ISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|.+.....+...+... ++...+.+||||||||||||++|++||+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35666666666665444321 1246778899999999999999999999874
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.32 E-value=6.4e-07 Score=87.62 Aligned_cols=51 Identities=24% Similarity=0.218 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHhhhc-----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS-----------QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.|.+.....+...+..... ..++.++|||||||||||++|+++|+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467787777777655443211 455667999999999999999999999976
No 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.32 E-value=6.8e-06 Score=90.84 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=100.1
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHH--HHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRK--LKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~--l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
.+||+.++++|.+.|... .....+.|+|+.|+|||+||+.+++. +.... ...+++++.....+...++..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~---d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~F--d~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC---CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHH--SSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc---CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999752 23567999999999999999999863 33333 334566666666667677666665
Q ss_pred HHhcC------CC----C----hHHHHHHHHHHHcC-CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEE
Q psy17062 219 LLLNV------DA----P----PEQAKAMLERHFTR-PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIA 283 (520)
Q Consensus 219 ~l~g~------~~----~----~~~~~~~l~~~~~~-~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~t 283 (520)
.+... .. . .......+...+.. ..+..+||||+++.. +.+..+ . .. ..||.||
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~-----eqLe~f-~----pG--SRILVTT 272 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAF-N----LS--CKILLTT 272 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH-----HHHHHH-H----SS--CCEEEEC
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH-----HHHHhh-C----CC--eEEEEec
Confidence 43211 00 0 11233455555522 367899999999882 233222 2 23 3355566
Q ss_pred cCCCCchhhhhhhhhccCCcceEEeC----CCCHHHHHHHHHHHHh
Q psy17062 284 NTMDLPERTLKGKVSSRMGLTRLMFK----PYDHHQLQEIVQNRLK 325 (520)
Q Consensus 284 n~~~~~~~~l~~~l~sR~~~~~i~~~----~~~~~~~~~Il~~~l~ 325 (520)
+...... .+... ....+.++ +++.++..+++..++.
T Consensus 273 Rd~~Va~-----~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 273 RFKQVTD-----FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp SCSHHHH-----HHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred cChHHHH-----hcCCC-eEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 6543211 11111 11225555 7999999999998865
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.31 E-value=5.9e-07 Score=77.49 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+.|+...+..+...+.... ..+..|||+||||||||++|++|++..
T Consensus 3 iiG~s~~~~~~~~~~~~~a--~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLS--ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHT--TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred ceeCCHHHHHHHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4566666777766665543 355669999999999999999999864
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.29 E-value=5.9e-07 Score=86.27 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCCCCChHHHHHHHHHH---HHhhhc---CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRF---LLSKIS---QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~---~~~~~~---~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
...+.++...+..+... +...+. ..++.++|||||||||||++|+++|+++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566666666666653 333332 56778899999999999999999999854
No 130
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.29 E-value=4.8e-07 Score=88.02 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|.+.....+...+..... ..++.++|||||||||||++|++||+++.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3567777777777766544321 34678999999999999999999999764
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.28 E-value=5.4e-07 Score=80.66 Aligned_cols=48 Identities=29% Similarity=0.390 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.++..+...+.. ..+.++|||||||||||++|+++|+++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678898888877666543 45778999999999999999999999854
No 132
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.27 E-value=4.3e-07 Score=86.98 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.7
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+...+.++|||||||||||++|++||.++.
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 456778899999999999999999999864
No 133
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=7.7e-07 Score=84.66 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHHHHHh--------hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLS--------KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~--------~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|.+.....+...+.. .++...+.++|||||||||||++|++||.++.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 455555555555443322 12245678899999999999999999998864
No 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.25 E-value=5.5e-07 Score=92.77 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------cCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.|.+.....+...+...+ ...++.+||||||||||||++|++||+++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345666666666665543221 14577899999999999999999999986
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.25 E-value=1.2e-06 Score=85.55 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS----------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+..... ...+.++|||||||||||++|+++|+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578898888888877765211 34677899999999999999999999874
No 136
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.25 E-value=6.7e-07 Score=81.38 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=68.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHh--CCC-eEEEEEccccCCChHHH-H-HH-HHHHHhcCCCChHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEI--GDK-FVYVEMNALSIPEPKRA-Y-SR-ILELLLNVDAPPEQAKAMLERHF 238 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~--~~~-~~~i~v~~~~~~~~~~~-~-~~-i~~~l~g~~~~~~~~~~~l~~~~ 238 (520)
...+++|+||+|||+++...+....... ..+ .++++.++..+..+... + .. .+....++.. ....+...+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~----~~~~~~~~~ 81 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQL----SAHDMYEWI 81 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCE----EGGGHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccc----cHHHHHHHh
Confidence 4689999999999999877654432000 013 44444554433210000 0 00 0000000000 011222232
Q ss_pred cCC-CCceEEEEcCCccccccC---hH--HHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCC
Q psy17062 239 TRP-HGPCVLLIDELDYLCNKR---QD--VIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPY 311 (520)
Q Consensus 239 ~~~-~~~~vLiiDEid~l~~~~---~~--~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~ 311 (520)
..+ +...||||||++.+.+.+ .+ .++..++. .....+.+|.+++... .+...+..|+..+ +++.++
T Consensus 82 ~~~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~--~r~~~~~iil~tq~~~----~l~~~lr~ri~~~-~~l~~~ 153 (199)
T 2r2a_A 82 KKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNT--HRHQGIDIFVLTQGPK----LLDQNLRTLVRKH-YHIASN 153 (199)
T ss_dssp TSGGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGG--TTTTTCEEEEEESCGG----GBCHHHHTTEEEE-EEEEEC
T ss_pred hccccCceEEEEEChhhhccCccccchhHHHHHHHHh--cCcCCeEEEEECCCHH----HHhHHHHHHhheE-EEEcCc
Confidence 111 468899999999995432 11 23333332 2344566777788744 3455677887644 666653
No 137
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=9.4e-07 Score=88.70 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhhcC-CCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKISQ-STTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.+.|++.....+.......... .++.++|||||||||||++|+++|+++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356788888777655444333333 34478999999999999999999999863
No 138
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.23 E-value=8e-07 Score=88.91 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKI--------SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|.+..+..+...+...+ ...++.+||||||||||||++|++||+++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 457788888888877665432 135788999999999999999999998763
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.19 E-value=1.5e-05 Score=71.20 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=42.4
Q ss_pred CCceEEEEcCCccc---cccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHH
Q psy17062 242 HGPCVLLIDELDYL---CNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQE 318 (520)
Q Consensus 242 ~~~~vLiiDEid~l---~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~ 318 (520)
..|.+|+|||++-. +......+..+++. .+..+|.+++...... +...+.+|-....+.|...+.+++..
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~-----~~~~~i~~~H~~h~~~--~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-----PNVNVVATIPIRDVHP--LVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-----TTSEEEEECCSSCCSH--HHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-----CCCeEEEEEccCCCch--HHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 47899999996433 33344556666652 2333445554222222 34567777544568888877666655
Q ss_pred HHHH
Q psy17062 319 IVQN 322 (520)
Q Consensus 319 Il~~ 322 (520)
-+..
T Consensus 171 ~l~~ 174 (178)
T 1ye8_A 171 DILS 174 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.19 E-value=9.2e-07 Score=90.08 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=54.8
Q ss_pred HhHhhcCCCCCCCCCCChHHHHHHHHHHH-HhhhcC--CCCCcEEE--EcCCCCcHHHHHHHHHHHHHHH
Q psy17062 451 LARESLHLSRVPESLPCREAEFQSIHRFL-LSKISQ--STTGCMYI--SGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 451 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~--~~~~~iLL--yGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+..+...+.|..+.||+.++..+...+ ...... ..+..+++ |||||||||+||+++++.+...
T Consensus 10 ~~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~ 79 (412)
T 1w5s_A 10 KDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA 79 (412)
T ss_dssp SCGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHH
T ss_pred ccHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHH
Confidence 45666777788899999999999999988 766555 46668999 9999999999999999998764
No 141
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=1e-06 Score=89.22 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=40.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS--------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+..... ..++.+||||||||||||++|++||+++.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4678888888888776654332 34578999999999999999999998754
No 142
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.18 E-value=1.1e-06 Score=88.17 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHHHhhhc-----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS-----------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++.....+...+..... ..++.+||||||||||||++|++||+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 367888888887776643221 13678899999999999999999999873
No 143
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.17 E-value=1.2e-06 Score=91.04 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhh---------hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSK---------ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.|.+..+..+...+... ++..++.+||||||||||||++|++||+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 45788888888877666543 336788899999999999999999999875
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.17 E-value=6e-07 Score=77.25 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+.|+...+..+...+.... ..+.+||||||||||||++|++|++..
T Consensus 6 ~iG~s~~~~~l~~~~~~~~--~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAA--KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp --CCCHHHHHHHHHHHHHH--TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred ceeCCHHHHHHHHHHHHHh--CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4566666777776666543 345569999999999999999998653
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.16 E-value=2.1e-06 Score=79.08 Aligned_cols=48 Identities=31% Similarity=0.447 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+... ...++|||||||||||++|+++++++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT----CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHcCcHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35678888888887766532 4445999999999999999999998854
No 146
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.16 E-value=1.9e-06 Score=88.79 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHHHHHHh--------hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLS--------KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~--------~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
++.|.+.....+...+.. .++...+.+||||||||||||++|++||.++.
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455666655555543322 23456788999999999999999999999764
No 147
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.15 E-value=1.2e-06 Score=86.69 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=37.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+.. +.++|||||||||||++|+++|+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3577888888777766653 46899999999999999999999764
No 148
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.14 E-value=2.4e-06 Score=83.52 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-----QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+..... .++...+||+||||||||++|++||..+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3577899998888888776543 234457999999999999999999999854
No 149
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.14 E-value=1.9e-06 Score=89.40 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++.++..+...+.. ....++|||||||||||++|++||..+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999988776653 46678999999999999999999999854
No 150
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.14 E-value=1.7e-06 Score=88.11 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS----------QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++.....+...+..... ..++.+||||||||||||++|++||+.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578888888888766644321 13578899999999999999999999874
No 151
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.13 E-value=2.1e-06 Score=85.13 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+..... ..+..+||||||||||||++|+++|+++.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4578898888888887776543 45667899999999999999999998764
No 152
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=2e-06 Score=77.59 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 489 GCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 489 ~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.++|||||||||||++|.+||+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999885
No 153
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.08 E-value=3.4e-06 Score=79.65 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhcCC-C-CCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 473 QSIHRFLLSKISQS-T-TGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 473 ~~l~~~~~~~~~~~-~-~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+..++...+..+ + ..+||||||||||||++|++||+.+
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34445566666665 3 4579999999999999999999863
No 154
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.08 E-value=4.5e-06 Score=76.12 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 471 EFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 471 ~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+..+..++........+.+++||||||||||++|++|+.++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444444443322223378999999999999999999998864
No 155
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.04 E-value=2.3e-05 Score=70.37 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-C
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP-H 242 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~-~ 242 (520)
+...+++|++|+||||++..++..+... +..++.+.... .+... ...+...+ |...... ....+...+... .
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~-d~r~~-~~~i~s~~-g~~~~~~-~~~~~~~~~~~~~~ 75 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI-DSRYH-STMIVSHS-GNGVEAH-VIERPEEMRKYIEE 75 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC------C-CCEECC-----CEECE-EESSGGGGGGGCCT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc-ccccC-cccEEecC-CCceeeE-EECCHHHHHHHhcC
Confidence 3568899999999999998888777554 44444432211 00000 00000000 1000000 000011222222 3
Q ss_pred CceEEEEcCCccccccChHHHHHHHH
Q psy17062 243 GPCVLLIDELDYLCNKRQDVIYNILE 268 (520)
Q Consensus 243 ~~~vLiiDEid~l~~~~~~~L~~ll~ 268 (520)
...+|+|||++.+.....+.|..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~ 101 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLD 101 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHH
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHH
Confidence 57899999999986654455555555
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.04 E-value=5e-06 Score=83.75 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHHHHhhh--------------------------cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKI--------------------------SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++.....+...+...+ ...++.+||||||||||||++|++||+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 56788888888876663111 123567899999999999999999999873
No 157
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.04 E-value=1.8e-06 Score=89.71 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.|++..+..+...+. .+.+||||||||||||++|++||..+
T Consensus 22 ~~ivGq~~~i~~l~~al~------~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH------HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHh------cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 467888888877776665 45689999999999999999999876
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.03 E-value=4.6e-06 Score=77.94 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
...+.++|||||||||||++|+++|+++...
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3367789999999999999999999998764
No 159
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.03 E-value=1.2e-05 Score=77.88 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~ 187 (520)
+..++|+||||+|||+++.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 355799999999999999999987
No 160
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.03 E-value=4.6e-06 Score=74.60 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 468 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++..+..+..++. .+....+.+++|+||||||||+||++|+..+...
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 19 QNRALLTIRVFVH-NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp HHHHHHHHHHHHH-SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444444333 3344567889999999999999999999998743
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=6.4e-06 Score=80.91 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+... ...++|||||||||||++|+++|+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG----SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC----CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 46788888888887766543 334599999999999999999999975
No 162
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=2.2e-05 Score=81.22 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
++++|.|+||||||+++..++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999999999999765
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.02 E-value=5e-06 Score=78.81 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.9
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+...+.|++||||||||||+||++||..+.
T Consensus 45 ~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 45 GARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356677899999999999999999998753
No 164
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.02 E-value=5.2e-06 Score=81.61 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+..... ...+.++|||||||||||++|+++|+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678888888888777665433 34567899999999999999999999874
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=2.9e-06 Score=89.22 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=40.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcC-------------CCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQ-------------STTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..+.|++..+..+...+...... .++.++|||||||||||++|+++|+++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788888888888877753321 245689999999999999999999987
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.01 E-value=5.8e-06 Score=81.81 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCCChHHHHHHHHHHHHhhhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKIS-QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++..+..+...+..... ..++..++||||||||||+||++||.++.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345666677777666654322 34557899999999999999999999873
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.00 E-value=7.4e-06 Score=76.32 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++.++..+...+.. ...+..+|||||||||||++|+++++.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3578888888888777653 233457999999999999999999998864
No 168
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.00 E-value=6.8e-06 Score=85.26 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCCCChHHHHHHHHHHHHh--------hhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLS--------KISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.++.|.+.....+...+.. .++...+.++|||||||||||+||++||.++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456666555555443322 12345677899999999999999999998763
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=3.7e-06 Score=83.67 Aligned_cols=48 Identities=25% Similarity=0.444 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+ ......++|||||||||||++|+++|+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTL----KSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp TTCCSCCTTHHHHHHHT----TCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHH----hcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34566666665554443 3333345999999999999999999999874
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.96 E-value=1.1e-05 Score=79.34 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+.++|||||||||||++|++|++++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45679999999999999999999998654
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.95 E-value=6.3e-06 Score=84.67 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCCCChHHHH---HHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEF---QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~---~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.+.|++..+ ..+...+... ...++|||||||||||++|++||+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~----~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG----HLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT----CCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCcHHHHhchHHHHHHHHcC----CCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4577887766 4555544432 4468999999999999999999998743
No 172
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.94 E-value=9e-06 Score=78.19 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.7
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+...+.+++||||||||||+||++||..+.
T Consensus 69 ~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 69 GARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp TCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 345667799999999999999999998753
No 173
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.93 E-value=7.7e-06 Score=78.02 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|+...+..+...+..... .+.+||||||||||||++|++|++.+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 455666667776665554433 456799999999999999999998765
No 174
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.92 E-value=3.5e-06 Score=83.82 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++.....+..... ....+++|||||||||||++|+++|+.+.
T Consensus 25 ~i~G~~~~~~~l~~~~~----~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAV----DPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GSCSCHHHHHHHHHHHH----CGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hccChHHHHHHHHHHhh----CCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 45666664444322222 22345699999999999999999999875
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.92 E-value=9e-06 Score=80.00 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+.+.|++.....+...+. ....+..+||+||||||||++|+++|+++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 26 DECILPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTSCCCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 457788888777776666 234556688899999999999999998873
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=1.2e-05 Score=79.78 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++..+..+...+.. +...++|||||||||||++|+++|+.+.
T Consensus 26 ~~~g~~~~~~~L~~~i~~----g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 355677777766665553 2223499999999999999999999985
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.87 E-value=1.6e-05 Score=77.70 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.+++||||||||||.||++||+++.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999987
No 178
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.86 E-value=4.6e-05 Score=70.34 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP--EQAKAMLERHFT 239 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~--~~~~~~l~~~~~ 239 (520)
..+..++++|++|+||||++..++..+... +..++.+...... . ....+.+.+ |..... ......+...+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~--r-~~~~i~srl-G~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDT--R-SIRNIQSRT-GTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCG--G-GCSSCCCCC-CCSSCCEEESSTHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCc--h-HHHHHHHhc-CCCccccccCCHHHHHHHHH
Confidence 345678899999999999999999988766 4444544322110 0 000111111 211110 000111222222
Q ss_pred CC---CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 240 RP---HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 240 ~~---~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
.. ..+.+|+|||++.+.....+.+..+.+ . ++.||+++...+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~----~--gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE----N--GFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH----T--TCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh----C--CCeEEEEecccc
Confidence 21 458899999999986543333433333 1 466666666554
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.83 E-value=2.2e-05 Score=78.59 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
..+.|++..+..+...+.. .+.+..+|||||||||||++|+++|+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578898888888777653 234456899999999999999999998853
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.82 E-value=9.1e-06 Score=79.50 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++..+..+...+. .+...++|||||||||||++|+++|+.+.
T Consensus 18 ~~~g~~~~~~~l~~~l~----~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVE----RKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp GSCSCHHHHHHHHTTTT----TTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 46677776666554433 33334599999999999999999999974
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.81 E-value=3.8e-05 Score=68.86 Aligned_cols=117 Identities=9% Similarity=0.051 Sum_probs=66.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc---CCChHHHHHHHHHHH--hcCCCC---------hHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS---IPEPKRAYSRILELL--LNVDAP---------PEQ 229 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~---~~~~~~~~~~i~~~l--~g~~~~---------~~~ 229 (520)
.+.+++++++|.||||+|-.++-..... +..+..+.... ...+..++..+.-.+ .|.... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 4679999999999999999999988776 56666653322 122333333220000 011000 011
Q ss_pred HHHHHHHHHcCC--CCceEEEEcCCcccccc---ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 230 AKAMLERHFTRP--HGPCVLLIDELDYLCNK---RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 230 ~~~~l~~~~~~~--~~~~vLiiDEid~l~~~---~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
....+....... ....+|||||+.....- ..+.+++++. ......-||.|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECCCC
Confidence 222222222222 57899999999765332 3345555554 345667788888864
No 182
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=1.6e-05 Score=77.85 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 463 ESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..+.|++..+..+...+.. .....+|||||||||||++|+++|+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3567888888777666542 2333499999999999999999999984
No 183
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.77 E-value=0.00019 Score=65.95 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH-----------h-cCCCChHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL-----------L-NVDAPPEQ 229 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l-----------~-g~~~~~~~ 229 (520)
..+..++|+|++|+|||+++..++. .. +..+++++.....+...+. .+...+ . .......+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHH
Confidence 3556799999999999999999998 22 5677788776533433332 222111 0 11111111
Q ss_pred ---HHHHHHHHHcCCCCceEEEEcCCccccc
Q psy17062 230 ---AKAMLERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 230 ---~~~~l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
....+...+.. .+.+|||||+..+..
T Consensus 91 ~~~~~~~~~~l~~~--~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 91 QRRVIGSLKKTVDS--NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHHHHHHCCT--TEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHhhc--CCCEEEEcCcHHHhh
Confidence 22222222221 599999999988753
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.76 E-value=9.7e-05 Score=87.29 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC---------CCChHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV---------DAPPEQAKA 232 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~---------~~~~~~~~~ 232 (520)
..+.+++|+||||||||+||.+++.+.... +..++++++....++.. ...+ |. .....+...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~-----a~~~-G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKL-GVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHT-TCCTTTCEEECCSSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH-----HHHc-CCCchhceeecCChHHHHHH
Confidence 356789999999999999999999987665 66778888877655443 1222 31 112223333
Q ss_pred HHHHHHcCCCCceEEEEcCCccccc
Q psy17062 233 MLERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 233 ~l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
.+...... ..+++|||||++.+.+
T Consensus 1496 ~~~~lvr~-~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1496 ICDALARS-GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHH-TCCSEEEESCGGGCCC
T ss_pred HHHHHHhc-CCCCEEEEcChhHhcc
Confidence 33333222 5799999999987765
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.75 E-value=0.00015 Score=67.07 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+..++|+|++|+|||++++.++..+... +..+++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 45679999999999999999999877655 344555554
No 186
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.75 E-value=4.3e-05 Score=89.22 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCC------hHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP------PEQAKAMLERH 237 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~------~~~~~~~l~~~ 237 (520)
+..++||||||||||++|++++.+.... +-+.++++.....++. +.+-.|-... +...+..++.+
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~---g~~~~fi~~~~~~~~~------~~~~~G~d~~~~~~~~~~~~e~~l~~~ 1152 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI------YARKLGVDIDNLLCSQPDTGEQALEIC 1152 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH------HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc---CCceeEEEcccchHHH------HHHHhCCCHHHHhhccccchHHHHHHH
Confidence 4459999999999999999999987665 5566777776654322 1122232111 11133444444
Q ss_pred HcCC--CCceEEEEcCCccccccCh----------H----HHHHHHHhcCC--CCCcEEEEEEEcC
Q psy17062 238 FTRP--HGPCVLLIDELDYLCNKRQ----------D----VIYNILEYLNK--PKSRLIILCIANT 285 (520)
Q Consensus 238 ~~~~--~~~~vLiiDEid~l~~~~~----------~----~L~~ll~~~~~--~~~~v~vI~~tn~ 285 (520)
+..+ ..+++||+|+++.|.+.+. . .+.++|..+.. ...+++|| ++|.
T Consensus 1153 ~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1153 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred HHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 4322 5799999999998877621 1 35666654421 13567676 5665
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.71 E-value=6.3e-05 Score=79.69 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=56.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHH---HHcC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLER---HFTR 240 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~---~~~~ 240 (520)
.+.++|+|+||||||+++..++..+... +..++.+.. .. .....+ ....+... ..+...+.. .|..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~Ap-T~----~Aa~~L-~e~~~~~a--~Tih~ll~~~~~~~~~ 272 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAP-TG----KAARRL-GEVTGRTA--STVHRLLGYGPQGFRH 272 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEES-SH----HHHHHH-HHHHTSCE--EEHHHHTTEETTEESC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecC-cH----HHHHHh-HhhhcccH--HHHHHHHcCCcchhhh
Confidence 3689999999999999999999988765 444443321 11 111111 11112211 011111100 0111
Q ss_pred ----CCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEE
Q psy17062 241 ----PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILC 281 (520)
Q Consensus 241 ----~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~ 281 (520)
.....+|||||+..+.. ..+..++.... ...+++++|
T Consensus 273 ~~~~~~~~dvlIIDEasml~~---~~~~~Ll~~~~-~~~~lilvG 313 (574)
T 3e1s_A 273 NHLEPAPYDLLIVDEVSMMGD---ALMLSLLAAVP-PGARVLLVG 313 (574)
T ss_dssp SSSSCCSCSEEEECCGGGCCH---HHHHHHHTTSC-TTCEEEEEE
T ss_pred hhcccccCCEEEEcCccCCCH---HHHHHHHHhCc-CCCEEEEEe
Confidence 13568999999998864 35556665443 345666666
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=3.7e-05 Score=78.97 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
+.+++||||||||||+||++||+++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999997653
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.65 E-value=0.00045 Score=70.07 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=84.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhc---------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 136 RVPESLPCREAEFQSIHRFLLSKISQ---------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 136 ~~p~~l~gr~~ei~~l~~~L~~~~~~---------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
.++..+-..+..+..+.+.|...+.. ..+..++|.|++|+||||++..++..+... +..+..+++...
T Consensus 60 ~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~ 136 (433)
T 3kl4_A 60 KPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVY 136 (433)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCS
T ss_pred cccccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCcc
Confidence 33344444455555555555543332 235678999999999999999999999775 445555554433
Q ss_pred CChHHHHHHH--HHHHhcCCC----ChHHHHHHHHHHHcCC--CCceEEEEcCCcccc--ccC--hHHHHHHHHhcCCCC
Q psy17062 207 PEPKRAYSRI--LELLLNVDA----PPEQAKAMLERHFTRP--HGPCVLLIDELDYLC--NKR--QDVIYNILEYLNKPK 274 (520)
Q Consensus 207 ~~~~~~~~~i--~~~l~g~~~----~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~--~~~--~~~L~~ll~~~~~~~ 274 (520)
.. . .+.++ +....|.+. ............+..+ ..+.+||||....+. ... ...+..++.... .
T Consensus 137 r~-~-a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--p 212 (433)
T 3kl4_A 137 RP-A-AYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--P 212 (433)
T ss_dssp CH-H-HHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--C
T ss_pred ch-h-HHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--C
Confidence 21 1 11111 122222211 0011112222233333 478899999998765 221 122333333332 3
Q ss_pred CcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCH
Q psy17062 275 SRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDH 313 (520)
Q Consensus 275 ~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~ 313 (520)
..++++.-+..-.... .....|...+.+.-+.+..++.
T Consensus 213 d~vlLVlDa~~gq~a~-~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 213 DDVILVIDASIGQKAY-DLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp SEEEEEEEGGGGGGGH-HHHHHHHHHCSSEEEEEECGGG
T ss_pred cceEEEEeCccchHHH-HHHHHHhcccCCcEEEEecccc
Confidence 3455554333211111 1223444444445567777764
No 190
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.64 E-value=0.0012 Score=68.89 Aligned_cols=152 Identities=12% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEEcccc----------------CCChHHHHHHHHHHHhcC---
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGD-KFVYVEMNALS----------------IPEPKRAYSRILELLLNV--- 223 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~-~~~~i~v~~~~----------------~~~~~~~~~~i~~~l~g~--- 223 (520)
..++||.|.+|+|||++++.++..+...... .+.++.++... .+++..+. .++..+..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~-~~L~~lv~EMer 292 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAA-NALRWSVAEMER 292 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHH-HHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHH-HHHHHHHHHHHH
Confidence 4689999999999999999998887654322 56777776542 11222211 111111110
Q ss_pred --------C-CChHHHHHHHHHHHc----------------------CCCCceEEEEcCCccccccC----hHHHHHHHH
Q psy17062 224 --------D-APPEQAKAMLERHFT----------------------RPHGPCVLLIDELDYLCNKR----QDVIYNILE 268 (520)
Q Consensus 224 --------~-~~~~~~~~~l~~~~~----------------------~~~~~~vLiiDEid~l~~~~----~~~L~~ll~ 268 (520)
. .......+.+..... ..-.+.+|||||++.+.... .+.|..+..
T Consensus 293 R~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~~~~~~~L~~Iar 372 (574)
T 2iut_A 293 RYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQ 372 (574)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhhHHHHHHHHHHHH
Confidence 0 000001111111000 01235799999999886532 233444444
Q ss_pred hcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHHH
Q psy17062 269 YLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQ 321 (520)
Q Consensus 269 ~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il~ 321 (520)
.. ...++.+|+++.++... .+...+.+.|.. +|.|...+..+...||.
T Consensus 373 ~G--Ra~GIhLIlaTQRPs~d--~I~~~Iran~~~-RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 373 KA--RAAGIHLILATQRPSVD--VITGLIKANIPT-RIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HC--TTTTEEEEEEESCCCTT--TSCHHHHHTCCE-EEEECCSCHHHHHHHHS
T ss_pred HH--hhCCeEEEEEecCcccc--cccHHHHhhhcc-EEEEEcCCHHHHHHhcC
Confidence 33 35678888888876521 134445555653 37888888888877764
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.64 E-value=0.00051 Score=62.96 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh------H---HHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP------E---QAKAMLE 235 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~------~---~~~~~l~ 235 (520)
.++++.|++|||||+++-.++..+... +..++.++........ . +..+.+..... . .....+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~---G~~V~v~d~D~q~~~~-~----~al~~gl~~~~~~~~~~~~~~~~e~~l~ 78 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ---GVRVMAGVVETHGRAE-T----EALLNGLPQQPLLRTEYRGMTLEEMDLD 78 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCTTCHH-H----HHHHTTSCBCCCEEEEETTEEEEECCHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CCCEEEEEeCCCCChh-H----HHHhcCccccCcceeecCCcccccccHH
Confidence 469999999999999999999998776 4444444443222211 1 11122211100 0 0000111
Q ss_pred HHHcCCCCceEEEEcCCccccc--cChHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 236 RHFTRPHGPCVLLIDELDYLCN--KRQDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 236 ~~~~~~~~~~vLiiDEid~l~~--~~~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
..+. ..|.+++|||+-+... .....+++.+.... .+.+-++.++|-
T Consensus 79 ~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l--~sgidVitT~Nl 126 (228)
T 2r8r_A 79 ALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELL--AAGIDVYTTVNV 126 (228)
T ss_dssp HHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH--HTTCEEEEEEEG
T ss_pred HHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHH--cCCCCEEEEccc
Confidence 1111 2689999999986522 22233333333221 345667777774
No 192
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.62 E-value=0.00022 Score=69.06 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
..+..++|.|++|+||||+++.++..+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988654
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.61 E-value=0.00018 Score=67.53 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+||||+++.++....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3556799999999999999999995443
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.60 E-value=0.001 Score=67.57 Aligned_cols=167 Identities=11% Similarity=0.112 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHhhc--------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHH
Q psy17062 143 CREAEFQSIHRFLLSKISQ--------STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYS 214 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~--------~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~ 214 (520)
..+..+..+.+.|...+.. ..+..++|.|++|+||||++..++..+... +..++.++|...........
T Consensus 71 ~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa~eqL 147 (443)
T 3dm5_A 71 KKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGAYHQL 147 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHH
Confidence 3444455555555544321 235689999999999999999999998765 55666666654433111111
Q ss_pred HHHHHHhcCCC----ChHHHHHHHHHHHcCC--CCceEEEEcCCccccccC--hHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 215 RILELLLNVDA----PPEQAKAMLERHFTRP--HGPCVLLIDELDYLCNKR--QDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 215 ~i~~~l~g~~~----~~~~~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~--~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
..+....|.+. ........+...+..+ ..+.++|||....+.... -..+..+..... ...+++|.-+..-
T Consensus 148 ~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~--pd~vlLVvDA~~g 225 (443)
T 3dm5_A 148 RQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH--PHEVILVIDGTIG 225 (443)
T ss_dssp HHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEEGGGG
T ss_pred HHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhc--CceEEEEEeCCCc
Confidence 11111112110 0011112222222222 358899999997665331 112333333222 2234444433221
Q ss_pred CCchhhhhhhhhccCCcceEEeCCCCHHH
Q psy17062 287 DLPERTLKGKVSSRMGLTRLMFKPYDHHQ 315 (520)
Q Consensus 287 ~~~~~~l~~~l~sR~~~~~i~~~~~~~~~ 315 (520)
. ........|...+.+.-+.+..++...
T Consensus 226 q-~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 226 Q-QAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp G-GHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred h-hHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 1 111122344445544446667766543
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.0003 Score=69.53 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC---------CCChHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV---------DAPPEQAKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~---------~~~~~~~~~~ 233 (520)
.+..++|+||||+|||+++..++..+... +..+++++........ . ...+ |. .....+....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-r----a~rl-gv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-Y----AKNL-GVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-H----HHHH-TCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-H----HHHc-CCchhhhhhhhccCHHHHHHH
Confidence 45679999999999999999999988765 5567788876655443 1 2222 21 1223344444
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+...+.. ..+.+++||.+..+..
T Consensus 131 ~~~l~~~-~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 131 VDELVRS-GVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHT-SCCSEEEEECTTTCCC
T ss_pred HHHHhhh-cCCCeEEehHhhhhcC
Confidence 4443332 4678999999988875
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.58 E-value=7.7e-05 Score=78.67 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHh-hhc-CCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 465 LPCREAEFQSIHRFLLS-KIS-QSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 465 ~~~~~~~~~~l~~~~~~-~~~-~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
+.|.++....+...+.. .+. ..++..+||+||||||||++|++||..+..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 44555554444433321 111 225668999999999999999999998854
No 197
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=0.00039 Score=62.48 Aligned_cols=25 Identities=36% Similarity=0.702 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+.|.|++|+||||+++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3588999999999999999999886
No 198
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.57 E-value=0.00038 Score=68.94 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC---------CChHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD---------APPEQAKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~---------~~~~~~~~~ 233 (520)
.+..++|+|+||+|||+++..++..+... +..+++++.....++. + ... .|.. ....+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~--~---a~~-lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE--Y---AKK-LGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH--H---HHH-TTCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH--H---HHH-cCCCHHHeEEecCCCHHHHHHH
Confidence 45679999999999999999999887655 4566777776544432 1 122 2311 122333333
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+.... ....+.+||||++..+..
T Consensus 131 ~~~l~-~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 131 ADMLV-RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHH-TTTCCSEEEEECGGGCCC
T ss_pred HHHHH-hcCCCCEEEEcChHhhcc
Confidence 33333 234689999999999873
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.51 E-value=0.00059 Score=66.64 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++..++|.|+||+|||+++..++..+... +.++++++.. .+...+..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC--CCHHHHHHHHHHH
Confidence 456679999999999999999999877554 4567777654 3445555554443
No 200
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.51 E-value=4.4e-05 Score=65.95 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++..++|+||+|||||+|+++++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5667999999999999999999998864
No 201
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=7.4e-05 Score=74.28 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.+.|++.....+...+. .......+|||||||||||++|+++|.++
T Consensus 15 ~~vg~~~~~~~l~~~~~---~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GCCSCHHHHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHHHHHHh---hCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566665555433321 33333339999999999999999999976
No 202
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.45 E-value=0.0016 Score=64.79 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC---------CChHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD---------APPEQAKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~---------~~~~~~~~~ 233 (520)
.+..++|+|+||+|||+++..++..+... +..+++++.....++. + ...+ |.. ....+....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~--~---a~~~-g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV--Y---ARAL-GVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH--H---HHHT-TCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH--H---HHHc-CCCHHHceeecCCcHHHHHHH
Confidence 45679999999999999999999887654 5567778776544432 1 1222 221 223344444
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+..+.. ...+.+||||.+..+..
T Consensus 144 l~~l~~-~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 144 MELLVR-SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHT-TTCCSEEEEECTTTCCC
T ss_pred HHHHHh-cCCCCEEEEeChHHhcc
Confidence 444332 24688999999999874
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.44 E-value=0.00043 Score=63.94 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh--C-CCeEEEEEccccC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI--G-DKFVYVEMNALSI 206 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~--~-~~~~~i~v~~~~~ 206 (520)
.+..+.|.||+|+||||+++.++..+.... . .+...++++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 456799999999999999999998653210 0 1334677776554
No 204
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.42 E-value=2e-05 Score=83.92 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 490 CMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 490 ~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+|||+||||||||++|++||+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999999999998653
No 205
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00033 Score=65.37 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEEccccCCChHHHHHHHHHHHhcC-------------CCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI---GDKFVYVEMNALSIPEPKRAYSRILELLLNV-------------DAP 226 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~---~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~-------------~~~ 226 (520)
.+..++|+||+|+|||++++.++..+.... ..+...++++......+..+. .+...+ |. ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY-GLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT-TCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc-CCCHHHHhhCeEEEecCC
Confidence 556799999999999999999998532110 013467788776643333222 222222 11 111
Q ss_pred hHHHHHH---HHHHHcCCCCceEEEEcCCcccccc
Q psy17062 227 PEQAKAM---LERHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 227 ~~~~~~~---l~~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
....... +...+.. ..+.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVE-SRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHH-SCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhc-CCceEEEEeCchHHHHH
Confidence 2222122 2222211 47899999999887643
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.0013 Score=61.39 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.+..++|+|+||+|||+++..++..+... +..+++++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 45679999999999999999998877654 44566666543
No 207
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.41 E-value=0.00045 Score=62.77 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP- 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~- 241 (520)
.+...+++|+.|+|||+.+..++..+... +..++.+..... +.+ -...+.+.+ |........ ......+...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d-~R~-ge~~i~s~~-g~~~~a~~~-~~~~~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID-NRY-SEEDVVSHN-GLKVKAVPV-SASKDIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--------------------CCEEEC-SSGGGGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC-Ccc-hHHHHHhhc-CCeeEEeec-CCHHHHHHHHh
Confidence 34566799999999999999999888766 455555543211 111 111222222 221110000 0001233322
Q ss_pred CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 242 HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
....+|+|||++.+.....+.|..+.+ .++.||+++-+.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~------~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN------RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH------TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh------CCCEEEEEecccc
Confidence 247899999999986553333433333 2566777777665
No 208
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.35 E-value=0.0037 Score=58.47 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
..+..++|.|+||+||||+++.+++.+ +..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~------g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH------CYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh------CCeEEec
Confidence 356689999999999999999999988 7666654
No 209
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.35 E-value=0.00043 Score=64.66 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..++|+||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999999888765
No 210
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.33 E-value=0.00033 Score=66.85 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=32.3
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCch
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPE 290 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~ 290 (520)
..|.|||+||. -.|+......+..++..+.... +..+|.++.+.+...
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVP 208 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHH
Confidence 68999999998 4556666677777776542112 456777788776543
No 211
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.33 E-value=0.00015 Score=77.69 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.|++..+..+...+. .+..+||+||||||||++|++||..+.
T Consensus 42 ~i~G~~~~l~~l~~~i~------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAAN------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHHHHH------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhcccccc------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45677777766666555 456899999999999999999998763
No 212
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.31 E-value=0.0018 Score=66.57 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.++..++|.|+||+|||+++..++..+.... +.++++++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC
Confidence 3456799999999999999999999886542 345555554
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.29 E-value=0.00072 Score=67.06 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC---------CChHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD---------APPEQAKAM 233 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~---------~~~~~~~~~ 233 (520)
.+..++|+|+||+|||+++..++..+... +..+++++.....++.. ...+ |.. .......+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~-----a~~~-g~~~~~l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKL-GVDIDNLLCSQPDTGEQALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH-----HHHT-TCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHH-----HHHc-CCChhheeeeCCCCHHHHHHH
Confidence 45679999999999999999999888665 55677888765444321 1222 221 122233333
Q ss_pred HHHHHcCCCCceEEEEcCCccccc
Q psy17062 234 LERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 234 l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
+..+.. ...+.+||||.+..+..
T Consensus 133 ~~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 133 CDALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHHh-ccCCCEEEEcCHHHhcc
Confidence 333222 24688999999998874
No 214
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.27 E-value=0.00047 Score=67.66 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH---hCCCeEEEEEccccCCChHHHHHHHHHHHhcC-------------CCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQE---IGDKFVYVEMNALSIPEPKRAYSRILELLLNV-------------DAP 226 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~---~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~-------------~~~ 226 (520)
.+..++|+|+||+|||+++..++..+... .+.+..++|++.....++..+.. +...+ |. ...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~-g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL-GLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT-TCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh-CCCHHHHhccEEEEeCCC
Confidence 45679999999999999999999875321 01134678888766444443332 22222 11 111
Q ss_pred hHH---HHHHHHHHHcCCCCceEEEEcCCccccc
Q psy17062 227 PEQ---AKAMLERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 227 ~~~---~~~~l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
..+ ....+...+.....+.+||||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 121 2233333443324789999999998864
No 215
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.25 E-value=0.0005 Score=73.48 Aligned_cols=27 Identities=48% Similarity=0.583 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQ 190 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~ 190 (520)
...++|+|+||||||+++..++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999988864
No 216
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.24 E-value=0.0018 Score=62.57 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
.+..++|.|++|+||||++..++..+.... +..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCc
Confidence 466899999999999999999999987532 44445555433
No 217
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.21 E-value=0.00024 Score=70.12 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+..+.||+.++..+...+.. +..++++||+|+|||+|++.+++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHH
Confidence 34678999999999887764 267999999999999999999876
No 218
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.18 E-value=0.00087 Score=65.63 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh---------CCC----eEEEEEccccCCChHHHHHHHHHHHhcCC-----
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI---------GDK----FVYVEMNALSIPEPKRAYSRILELLLNVD----- 224 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~---------~~~----~~~i~v~~~~~~~~~~~~~~i~~~l~g~~----- 224 (520)
.+..++|+|+||+|||+++..++....-.. ..+ ..++|++.....++..+.. +...+ |..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~-g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA-GIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH-TCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc-CCCHHHHh
Confidence 456799999999999999999997642110 002 6788888776544444432 22332 211
Q ss_pred --------CChHH---HHHHHHHHHcCCCCceEEEEcCCccccc
Q psy17062 225 --------APPEQ---AKAMLERHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 225 --------~~~~~---~~~~l~~~~~~~~~~~vLiiDEid~l~~ 257 (520)
....+ ....+...+.....+.+||||.+..+..
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 11121 2223444444324688999999998854
No 219
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.18 E-value=0.0019 Score=61.81 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
.+..++|+|++|+||||++..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 220
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.17 E-value=0.0025 Score=63.17 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.+++.++|.||+|+||||++++++..+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 345689999999999999999999998765
No 221
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.15 E-value=0.00023 Score=70.43 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=36.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+..+.||+.++..+.. +.. ..++++||+|+|||+|++.+++++.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899998888866 442 4799999999999999999998764
No 222
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00022 Score=68.69 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=23.9
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
...+.-|+|.||||+|||++|++|+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445568999999999999999999876
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.0003 Score=62.32 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
+..++|+|++|+||||+++.+++.+ +..++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l------~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL------PEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS------SSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc------CCCeEEec
Confidence 3579999999999999999999988 66666544
No 224
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.13 E-value=0.0035 Score=64.85 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=43.5
Q ss_pred eEEEEcCCccccccCh----HHHHHHHHhcCCCCCcEEEEEEEcCCCCchhhhhhhhhccCCcceEEeCCCCHHHHHHHH
Q psy17062 245 CVLLIDELDYLCNKRQ----DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIV 320 (520)
Q Consensus 245 ~vLiiDEid~l~~~~~----~~L~~ll~~~~~~~~~v~vI~~tn~~~~~~~~l~~~l~sR~~~~~i~~~~~~~~~~~~Il 320 (520)
.+|+|||+..+..... +.|..+.... ...++.+|.++.++... .+...+.+.|. .+|.|.-.+..+...|+
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~~d--vl~~~i~~n~~-~RI~lrv~s~~dsr~il 373 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKA--RAAGIHLVLATQRPSVD--VITGLIKANIP-TRIAFTVSSKIDSRTIL 373 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGGTEEEEEEESCCCTT--TSCHHHHHHCC-EEEEECCSSHHHHHHHH
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhCCcEEEEEecCCccc--cccHHHHhhcC-CeEEEEcCCHHHHHHhc
Confidence 5999999977765322 2333333322 23478888888876521 13334445454 34788888888888776
Q ss_pred H
Q psy17062 321 Q 321 (520)
Q Consensus 321 ~ 321 (520)
.
T Consensus 374 g 374 (512)
T 2ius_A 374 D 374 (512)
T ss_dssp S
T ss_pred C
Confidence 4
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.10 E-value=0.0035 Score=64.30 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILE 218 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~ 218 (520)
++..++|.|+||+|||+++..++..+.... +.++++++.. .+...+..+++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC--CCHHHHHHHHHH
Confidence 456799999999999999999999876532 4456666553 234444444443
No 226
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.001 Score=61.03 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|+||+||||+++.+++.+ +..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l------~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY------GLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh------CceEEeh
Confidence 3579999999999999999999998 7776654
No 227
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.09 E-value=0.00022 Score=63.81 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCcHH-HHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 162 STTGCMYISGVPGTGKT-ATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT-~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
..+...++||+.|+||| .|++.+.+.... +..++++.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEc
Confidence 34567899999999999 666666665433 45555554
No 228
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.08 E-value=0.00021 Score=69.12 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+..+|||||||||||+||.++|.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 344799999999999999999987
No 229
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.08 E-value=0.0025 Score=61.42 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=54.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCC---------CChHHH-HHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD---------APPEQA-KAMLE 235 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~---------~~~~~~-~~~l~ 235 (520)
.++|+||||+|||+|+..++..+..... +..++|+++.....+.. ...+ |.. ....+. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s~~~~r-----a~~l-Gvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFGITPAY-----LRSM-GVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCCCCHHH-----HHHT-TCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccchhhHHH-----HHHh-CCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999999988765421 45778898876655431 2222 322 122233 33222
Q ss_pred HHH--cCCCCceEEEEcCCccccc
Q psy17062 236 RHF--TRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 236 ~~~--~~~~~~~vLiiDEid~l~~ 257 (520)
.+ .....+.+||||-|..|..
T Consensus 103 -~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 -QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp -HHHTCCTTCCEEEEEECSTTCBC
T ss_pred -HHHHhhccCceEEEEeccccccc
Confidence 22 2236799999999999974
No 230
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.07 E-value=0.00033 Score=63.48 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.7
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..++.-|+|.||||+|||++++.|+..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3466779999999999999999999875
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.07 E-value=0.00033 Score=62.46 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
+.+++|+|++|+||||+++.+++.+ +..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l------~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT------KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH------CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh------CCCEEECh
Confidence 4579999999999999999999998 77776543
No 232
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.06 E-value=0.00068 Score=60.89 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.+..++|.|++|+||||+++.+++.+ +..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l------~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY------GYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh------CCeEEcH
Confidence 34679999999999999999999988 7766544
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00038 Score=63.02 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
++..++|.|++|+||||+++.+++.+ +..++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l------~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL------NVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc------CCCEEcch
Confidence 45689999999999999999999998 77766543
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.03 E-value=0.00054 Score=61.59 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA---PPEQAKAMLERHFT 239 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~---~~~~~~~~l~~~~~ 239 (520)
.+...+++|+.|+|||+.+..+++.+... +..++.+.... .+.+. ...+.+.+ |... ..... ..+...+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~-d~r~~-~~~i~s~~-g~~~~a~~~~~~-~~i~~~~~ 79 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI-DNRYS-KEDVVSHM-GEKEQAVAIKNS-REILKYFE 79 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC---------CEEECTT-SCEEECEEESSS-THHHHHCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc-Cccch-HHHHHhhc-CCceeeEeeCCH-HHHHHHHh
Confidence 34578899999999999999999988655 44444443111 11000 00011111 1100 00001 11222221
Q ss_pred CCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
....+|+|||++.+.....+.+..+.+ . ++.||+++-+.+
T Consensus 80 --~~~dvViIDEaqfl~~~~v~~l~~l~~-----~-~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDDEIVEIVNKIAE-----S-GRRVICAGLDMD 119 (191)
T ss_dssp --TTCSEEEECSGGGSCTHHHHHHHHHHH-----T-TCEEEEEECSBC
T ss_pred --ccCCEEEEECCCCCCHHHHHHHHHHHh-----C-CCEEEEEecccc
Confidence 246899999999986543333333333 2 455666665544
No 235
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.02 E-value=0.0012 Score=60.98 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3556788999999999999999997653
No 236
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.02 E-value=0.0022 Score=64.56 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH--h-CCCeEEEEEccccCCChHHHHHHHHHHHhcC-------------CCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQE--I-GDKFVYVEMNALSIPEPKRAYSRILELLLNV-------------DAP 226 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~--~-~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~-------------~~~ 226 (520)
.+..++|+||+|+|||+|++.++-.+... . ..+...++++......+..+ ..+...+ |. ...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~-gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRF-GLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHT-TCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHc-CCChHhHhhcEEEeccCC
Confidence 45679999999999999999876443211 0 01356788887664443322 2222222 21 111
Q ss_pred hHHHHHHHH---HHHcCCCCceEEEEcCCccccc
Q psy17062 227 PEQAKAMLE---RHFTRPHGPCVLLIDELDYLCN 257 (520)
Q Consensus 227 ~~~~~~~l~---~~~~~~~~~~vLiiDEid~l~~ 257 (520)
.......+. ..+.. ..+.+|+||++..+..
T Consensus 255 ~~~~~~~l~~~~~~l~~-~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSE-SRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-SCEEEEEEETGGGGCC
T ss_pred hHHHHHHHHHHHHHHHh-cCCceEEecchhhhCc
Confidence 112222222 22211 4789999999988765
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.01 E-value=0.0013 Score=64.90 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEEccccCCChHHHHHHHHHHHhcCC-------------CC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI---GDKFVYVEMNALSIPEPKRAYSRILELLLNVD-------------AP 226 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~---~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~-------------~~ 226 (520)
.+..++|+|+||+|||+++..++....... +.+..++|++.....++..+.. +...+ |.. ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~-g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF-NVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT-TCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc-CCCHHHHHhceeEeecCC
Confidence 456789999999999999999998642210 0145778888766544443332 22222 111 11
Q ss_pred hHHH---HHHHHHHHcCC-CCceEEEEcCCccccc
Q psy17062 227 PEQA---KAMLERHFTRP-HGPCVLLIDELDYLCN 257 (520)
Q Consensus 227 ~~~~---~~~l~~~~~~~-~~~~vLiiDEid~l~~ 257 (520)
..+. ...+...+... ..+.+||||.+..+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 2222 22233444332 4788999999998864
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.00044 Score=65.29 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.0
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
...+..|+|.||||+|||++|+.|+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44566799999999999999999998764
No 239
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.98 E-value=0.002 Score=64.32 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
-..+..++|+||+|+||||+++.++..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556789999999999999999999876
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.98 E-value=0.0021 Score=63.57 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHH--HhC-CCeEEEEEccccCCChHHHHHHHHHHHh------------cCCCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQ--EIG-DKFVYVEMNALSIPEPKRAYSRILELLL------------NVDAP 226 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~--~~~-~~~~~i~v~~~~~~~~~~~~~~i~~~l~------------g~~~~ 226 (520)
..+..+.|+||+|+|||++++.++..+.. ..+ .+-.+++++......+..+ ..+...+. .....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 35567999999999999999999987621 110 0135678887654322222 22222110 01111
Q ss_pred hH---HHHHHHHHHHcCC----CCceEEEEcCCccccc
Q psy17062 227 PE---QAKAMLERHFTRP----HGPCVLLIDELDYLCN 257 (520)
Q Consensus 227 ~~---~~~~~l~~~~~~~----~~~~vLiiDEid~l~~ 257 (520)
.. .....+...+... ..+.+|||||+-.+..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 11 1222333333322 4799999999987753
No 241
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.97 E-value=0.00082 Score=60.50 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|++|+||||+++.+++.+ +..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l------~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY------GFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH------TCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh------CCeEEcH
Confidence 3579999999999999999999988 7666544
No 242
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.96 E-value=0.0037 Score=61.31 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILEL 219 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~ 219 (520)
.++..++|.|+||+|||+++..++..+... +.++++++.. .+...+..+++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 455679999999999999999999988764 5666666553 3455555555443
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00058 Score=60.59 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|+|++|+||||+++.+++.+ +..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~------~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS------GLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh------CCeEEEH
Confidence 4579999999999999999999988 7766543
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.95 E-value=0.00044 Score=66.56 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+..++|.|+||+||||+++.+++.+ +..++.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~------~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET------QGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT------TTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh------CCCeEEEec
Confidence 45679999999999999999999876 334456665
No 245
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.94 E-value=0.0018 Score=61.33 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4667789999999999999999998653
No 246
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.94 E-value=0.0034 Score=59.36 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=26.7
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
-.++..++|.||+|+||||+++.++..+...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 3456789999999999999999999988654
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00062 Score=59.69 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
.++|.|++|+||||+++.+++.+ +..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l------~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL------KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH------CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCeeecCc
Confidence 58999999999999999999988 77766544
No 248
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.89 E-value=0.00052 Score=62.96 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.+.-|+|.||||+||++.|+.||+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55568899999999999999999875
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.89 E-value=0.00061 Score=68.00 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.3
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++..++|+||||||||+|+++||..+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777889999999999999999999765
No 250
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.88 E-value=0.00058 Score=68.00 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4566789999999999999999998764
No 251
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.88 E-value=0.012 Score=59.75 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
+..++|+|++|+||||++..++..+... +..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecc
Confidence 4579999999999999999999998766 4455556654
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.87 E-value=0.0018 Score=58.67 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.|++.++.+.+.+... ....+..+.|.|++|+||||+++.++..+...
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp CHHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4566777777776543 23445678999999999999999999988654
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.87 E-value=0.00067 Score=60.55 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHH-HHHHhCCCeEEEEEc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRK-LKQEIGDKFVYVEMN 202 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~-l~~~~~~~~~~i~v~ 202 (520)
.+..++|+|++|+||||+++.+++. + ++.++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~------g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELD------GFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST------TEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC------CCEEeeHH
Confidence 4567999999999999999999998 5 66666443
No 254
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.85 E-value=0.0018 Score=64.10 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
..|.||++||. -.|+...+..++.++..+.. ..++.+|.+|.+.+
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~-~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINR-RLGLTILLITHEMD 225 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HSCCEEEEEESCHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHH
Confidence 68999999999 45555666777777765421 22456777777654
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.85 E-value=0.0073 Score=61.74 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
.++..++|.|+||+|||+++..++..+... +.++++++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 355679999999999999999999988765 5677777654
No 256
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.84 E-value=0.00068 Score=59.38 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
..+++|.|++|+||||+++.+++.+ +.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l------g~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL------KLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh------CCCEEEC
Confidence 4689999999999999999999998 8777654
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.83 E-value=0.0027 Score=58.17 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCC-----ChHHHHHHHHHHH--hcCCCChHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIP-----EPKRAYSRILELL--LNVDAPPEQAKAML 234 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~-----~~~~~~~~i~~~l--~g~~~~~~~~~~~l 234 (520)
..+..++|.||||+||+|.++.+++.+ ++.. ++..++. ....+-.. +..+ .|..++..-....+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~------g~~h--IstGdllR~~i~~~t~lg~~-~~~~~~~G~lVpde~~~~lv 97 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF------HFNH--LSSGDLLRAEVQSGSPKGKE-LKAMMERGELVPLEVVLALL 97 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH------CCEE--ECHHHHHHHHHTTCCHHHHH-HHHHHHHTCCCCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH------CCce--EcHHHHHHHHHHcCCchHHH-HHHHHhcCCCCCHHHHHHHH
Confidence 345678899999999999999999987 6554 4443221 00011111 1111 25555555555555
Q ss_pred HHHHcCC-CCceEEEEcCCcc
Q psy17062 235 ERHFTRP-HGPCVLLIDELDY 254 (520)
Q Consensus 235 ~~~~~~~-~~~~vLiiDEid~ 254 (520)
...+... ....-++||-+..
T Consensus 98 ~~~l~~~~~~~~g~ilDGfPR 118 (217)
T 3umf_A 98 KEAMIKLVDKNCHFLIDGYPR 118 (217)
T ss_dssp HHHHHHHTTTCSEEEEETBCS
T ss_pred HHHHhhccccccCcccccCCC
Confidence 5554432 3344577887643
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.0032 Score=61.00 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+..++|.|++|+||||++..++..+... +..+..+++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcc
Confidence 45678999999999999999999998765 333444444
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00069 Score=60.68 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
+..++|.|+||+||||+++.+++.+ +..++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l------~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL------RLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH------TCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc------CCeEec
Confidence 4578999999999999999999988 666554
No 260
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.81 E-value=0.00073 Score=59.65 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|++|+||||+++.+++.+ +..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l------~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL------DLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH------TCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc------CCCEEcc
Confidence 58999999999999999999998 7776643
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.80 E-value=0.00067 Score=60.39 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
..++|+|+||+||||+++.+++.+ ++.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCEEeCc
Confidence 358999999999999999999998 77766543
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.79 E-value=0.0023 Score=60.44 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
..|.||++||. -.|+......+..++..... . +..+|.++++.+..
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIV 216 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTT
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHH
Confidence 68999999998 55666667777777765532 2 45567777776644
No 263
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.79 E-value=0.0019 Score=60.93 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566789999999999999999997653
No 264
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00073 Score=63.34 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
..++..|+|.||||+|||++|+.|++.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466789999999999999999999865
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.0013 Score=59.51 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.1
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
...+..+.|.|++|+||||+++.++..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999987
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.77 E-value=0.0009 Score=58.81 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+.|+|++|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999987
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.76 E-value=0.00097 Score=60.33 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
..+..++|.|+||+||||+++.+++.+ +..++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l------~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL------GIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH------TCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh------CCcEEeh
Confidence 344579999999999999999999988 7766554
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.0011 Score=61.07 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.+..++|.|+||+||||+++.+++.+ +..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l------~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF------HAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc------CceEEeh
Confidence 45679999999999999999999988 7766544
No 269
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.75 E-value=0.0024 Score=58.58 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP---EQAKAMLERHFT 239 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~---~~~~~~l~~~~~ 239 (520)
.+...+++|+.|+||||.+...+...... +..++.+.... .+.+. ..+.+.+ |..... ....+ +....
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~-D~Ryg--~~i~sr~-G~~~~a~~i~~~~d-i~~~~- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK-DTRYS--SSFCTHD-RNTMEALPACLLRD-VAQEA- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT-CCCC--------------CEEEEESSGGG-GHHHH-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC-Cccch--HHHHhhc-CCeeEEEecCCHHH-HHHHh-
Confidence 34568899999999998888877776554 44444443211 11111 1233333 221100 00011 11111
Q ss_pred CCCCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
....+|+|||++.+.. ...+..+++ ..++.||+++-+.+..
T Consensus 89 --~~~dvViIDEaQF~~~--v~el~~~l~-----~~gi~VI~~GL~~DF~ 129 (234)
T 2orv_A 89 --LGVAVIGIDEGQFFPD--IVEFCEAMA-----NAGKTVIVAALDGTFQ 129 (234)
T ss_dssp --TTCSEEEESSGGGCTT--HHHHHHHHH-----HTTCEEEEECCSBCTT
T ss_pred --ccCCEEEEEchhhhhh--HHHHHHHHH-----hCCCEEEEEecccccc
Confidence 4578999999999953 333444444 2456777777765543
No 270
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.0025 Score=63.17 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4566788999999999999999998653
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.73 E-value=0.0021 Score=63.47 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3556789999999999999999997653
No 272
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.72 E-value=0.0023 Score=59.55 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567799999999999999999997653
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.72 E-value=0.0049 Score=56.35 Aligned_cols=46 Identities=7% Similarity=0.027 Sum_probs=31.6
Q ss_pred CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCCCc
Q psy17062 242 HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLP 289 (520)
Q Consensus 242 ~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~~~ 289 (520)
..|.+|++||. -.|+......+..++..... . +..+|.++.+.+..
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-E-KGIVIISSREELSY 196 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-H-HSEEEEEESSCCTT
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHH
Confidence 78999999999 55566677777777765431 2 34566677776644
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.72 E-value=0.0021 Score=63.05 Aligned_cols=47 Identities=17% Similarity=0.377 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 143 gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
.-+...+.+...+...+..+...+++|+|++|+||||+++.+++.+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34555666777776655555566799999999999999999999984
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.70 E-value=0.00096 Score=59.56 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
+..++|.|++|+||||+++.+++.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999884
No 276
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.69 E-value=0.00089 Score=66.16 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4566789999999999999999998664
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.0019 Score=58.44 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=31.5
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
...+..+.|.|++|+||||+++.++..+... +...++++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~---G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQK---GKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEecCc
Confidence 4566789999999999999999999998633 4444456543
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.68 E-value=0.0044 Score=63.13 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh-HHHHHHHHHH--H------hcCCCCh--HH-
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP-KRAYSRILEL--L------LNVDAPP--EQ- 229 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~-~~~~~~i~~~--l------~g~~~~~--~~- 229 (520)
..+..++|.|++|+|||+|++.++........ .+ .+++.+...++. ..++..+... + .+..... .+
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i-~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~ 226 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG-GI-SVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM 226 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC-CC-EEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhhhccC-cE-EEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence 34567999999999999999999988765432 22 344444443322 2222222111 0 0000000 00
Q ss_pred ----HHHHHHHHHcC-CCCceEEEEcCCccccccC
Q psy17062 230 ----AKAMLERHFTR-PHGPCVLLIDELDYLCNKR 259 (520)
Q Consensus 230 ----~~~~l~~~~~~-~~~~~vLiiDEid~l~~~~ 259 (520)
..-.+.+.|.. .+...+||+|++..+....
T Consensus 227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~ 261 (473)
T 1sky_E 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAG 261 (473)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHH
Confidence 11134455655 4788999999999887543
No 279
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.68 E-value=0.0012 Score=58.02 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
..++|.|++|+||||+++.+++.+ +..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l------g~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL------GYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH------TCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCcEEcc
Confidence 358999999999999999999998 7776653
No 280
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0016 Score=58.05 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=30.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 161 QSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
...+..++|.|++|+||||+++.+++.+... +..++.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~---~~~~~~~~ 48 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE---GYRVEVLD 48 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEee
Confidence 3456679999999999999999999998654 44444444
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.0013 Score=58.55 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
+..++|.|++|+||||+++.+++.+ +..++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l------~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL------GFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH------TCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------CCeEec
Confidence 3468999999999999999999988 765543
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.0016 Score=61.35 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
..+..++|.|+||+||||+++.+++.+ +..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l------~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF------QGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT------TTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc------CCCcEEEecHHH
Confidence 345679999999999999999999987 444455666543
No 283
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.65 E-value=0.0049 Score=57.23 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~ 187 (520)
+..+++.|++|+|||+++..++-.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 367999999999999877666543
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0012 Score=59.04 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|++|+||||+++.+++.+ +..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~------~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY------GYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh------CCeEEeH
Confidence 3568999999999999999999988 7666543
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.0013 Score=59.52 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
+..++|.|++|+||||+++.+++.+ +..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l------g~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC------GYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH------TCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------CCEEEe
Confidence 4579999999999999999999988 665554
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.64 E-value=0.00084 Score=60.08 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
.+..++|.|++|+||||+++.++..+ +...++++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~------~~g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP------GVPKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS------SSCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc------CCCeEEEccc
Confidence 45679999999999999999999863 4455666643
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.64 E-value=0.0011 Score=58.18 Aligned_cols=29 Identities=24% Similarity=0.498 Sum_probs=24.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|++|+||||+++.+ +.+ ++.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~------g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER------GAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT------TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHC------CCcEEEH
Confidence 5899999999999999999 666 7776654
No 288
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.63 E-value=0.015 Score=60.20 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
+..++|.|++|+||||++..++..+... +..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 4579999999999999999999988765 344444554
No 289
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.63 E-value=0.0015 Score=64.99 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3556789999999999999999997653
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.0014 Score=61.89 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
.++|.||+|+||||+++.+++.+ +..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~------~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET------GWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------CCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcC------CCeEEeccHH
Confidence 58899999999999999999988 7777766553
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.62 E-value=0.0016 Score=57.33 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..++|.|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35679999999999999999999987
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.0015 Score=58.33 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
.++|.|++|+||||+++.+++.+... +..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~---g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ---GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEEE
Confidence 58999999999999999999998543 44455554
No 293
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.61 E-value=0.011 Score=61.58 Aligned_cols=54 Identities=6% Similarity=-0.063 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l 220 (520)
++..++|.|+||+|||+++..++..+.... +.++++++... ++..+..+++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC--CHHHHHHHHHHHH
Confidence 456799999999999999999998875431 34556665432 3445555544433
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.60 E-value=0.0023 Score=55.50 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=26.0
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++.-+.|.||+|+|||+|+|+|+..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345677779999999999999999999876
No 295
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.55 E-value=0.0021 Score=60.81 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
+..++|.|+||+||||+++.+++.+... +..++.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~---g~~~i~~~~ 40 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN---NIDVIVLGS 40 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC---CCEEEEECc
Confidence 4579999999999999999999987543 566665554
No 296
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.55 E-value=0.0018 Score=60.08 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.+..++|.|++|+||||+++.+++.+ ++.++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l------~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF------CVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH------TCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh------CCceecH
Confidence 34679999999999999999999998 7766554
No 297
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.53 E-value=0.0023 Score=56.62 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+..+.|.|++|+||||+++.++..+... +.+++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~---g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC---CCcEEEECC
Confidence 45678999999999999999999988653 667777764
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.52 E-value=0.0014 Score=57.95 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~ 186 (520)
..++|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.52 E-value=0.0051 Score=58.17 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE----------------EEccccCCChHHHHHHHHHHHhcCCC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV----------------EMNALSIPEPKRAYSRILELLLNVDA 225 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i----------------~v~~~~~~~~~~~~~~i~~~l~g~~~ 225 (520)
. +..+.|.||+|+|||||++.++..+ ... +...+ ++...... ...+...+.-...-...
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~--G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~ 103 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL-PYS--GNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEELKGL 103 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS-CCE--EEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHHTCC
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC-CCC--cEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhhcch
Q ss_pred ChHHHHHHHHHHHcC-C------------------------CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEE
Q psy17062 226 PPEQAKAMLERHFTR-P------------------------HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLII 279 (520)
Q Consensus 226 ~~~~~~~~l~~~~~~-~------------------------~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~v 279 (520)
......+.+...=-. . ..|.+|++||. ..|+......+.+++..... .+
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-----tv 178 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-----EG 178 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-----EE
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-----cE
Q ss_pred EEEEcCCCCchh
Q psy17062 280 LCIANTMDLPER 291 (520)
Q Consensus 280 I~~tn~~~~~~~ 291 (520)
|.+|++.+....
T Consensus 179 iivtHd~~~~~~ 190 (263)
T 2pjz_A 179 ILVTHELDMLNL 190 (263)
T ss_dssp EEEESCGGGGGG
T ss_pred EEEEcCHHHHHH
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.50 E-value=0.0014 Score=60.55 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|++|+||||+++.+++.+ +..++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l------~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF------ELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS------SSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc------CCeEEec
Confidence 4679999999999999999999987 7766644
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.50 E-value=0.0016 Score=56.89 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|++|+||||+++.+++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l------~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL------NIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH------TCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCCEEEC
Confidence 48999999999999999999988 7766643
No 302
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.50 E-value=0.0024 Score=58.18 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
..+..+.|.||+|+||||+++.++..+... +....++.++...+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcC
Confidence 456678899999999999999999998643 11355666665544
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.49 E-value=0.011 Score=58.84 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.++..++|.||+|+||||+++.++..+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 456679999999999999999999988654
No 304
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.48 E-value=0.0018 Score=57.87 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|++|+||||+++.+++.+ +..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l------~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF------GWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH------CCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh------CCeEeeH
Confidence 3578999999999999999999988 7666544
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.46 E-value=0.0016 Score=59.53 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|+||+||||+++.+++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~------~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY------EIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCcEeeH
Confidence 48899999999999999999988 7666544
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.46 E-value=0.0017 Score=58.80 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..++|.|++|+||||+++.+++.+ +..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~------g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY------SFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS------SCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc------CceEEeH
Confidence 4578999999999999999999987 7665543
No 307
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.45 E-value=0.0023 Score=63.33 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----CeEE----------------EEEccccCCChHHHHHHHHHHHh
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----KFVY----------------VEMNALSIPEPKRAYSRILELLL 221 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----~~~~----------------i~v~~~~~~~~~~~~~~i~~~l~ 221 (520)
..+..+.|.||+|+|||||++.++..+....+. +..+ +......+.....++..+.-.+.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Q ss_pred cCCCChHHHHHHHHHHHcCC----------------------------CCceEEEEcCC-ccccccChHHHHHHHHhcCC
Q psy17062 222 NVDAPPEQAKAMLERHFTRP----------------------------HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNK 272 (520)
Q Consensus 222 g~~~~~~~~~~~l~~~~~~~----------------------------~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~ 272 (520)
..........+.+...+... ..|.+|++||. -.|+......+..++.....
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 109 NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Q ss_pred CCCcEEEEEE
Q psy17062 273 PKSRLIILCI 282 (520)
Q Consensus 273 ~~~~v~vI~~ 282 (520)
..+..+|+.+
T Consensus 189 ~~g~tvi~vT 198 (353)
T 1oxx_K 189 RLGVTLLVVS 198 (353)
T ss_dssp HHCCEEEEEE
T ss_pred hcCCEEEEEe
No 308
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.44 E-value=0.0065 Score=55.68 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCceEEEEcCCccccccC-hHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 242 HGPCVLLIDELDYLCNKR-QDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~-~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
....+|||||+|.+.... ...+..++.... ....+|+.|.+.
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~---~~~~~i~lSAT~ 196 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLP---PTTQVVLLSATM 196 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSC---TTCEEEEEESSC
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCC---ccCeEEEEEeec
Confidence 557899999999987643 345666665442 233344444443
No 309
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0019 Score=60.63 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
+..|.|.||+|||||++++.||..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 66799999999999999999998764
No 310
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.44 E-value=0.0025 Score=63.43 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567789999999999999999997653
No 311
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.43 E-value=0.0031 Score=64.98 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 467 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++...+..+..++.. .. +.+|+.||||||||.++++++..|...
T Consensus 29 ~Q~~av~~~~~~i~~----~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE----KK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHS----SS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc----CC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 454555555444442 22 389999999999999999999998754
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.43 E-value=0.0042 Score=55.61 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+.|.|++|+||||+++.+++.+... ++.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~---g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR---GKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC---CC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEeeC
Confidence 47899999999999999999998654 566665544
No 313
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.42 E-value=0.0024 Score=63.23 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4566789999999999999999998653
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0012 Score=58.51 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
+..++|.|++|+||||+++.+++.+ +..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l------~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL------PGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS------TTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc------CCCEE
Confidence 4579999999999999999999987 66555
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.40 E-value=0.018 Score=55.40 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
+..+++.|++|+||||++..++..+... +..+..+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 4578899999999999999999998765 445555555433
No 316
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.40 E-value=0.0021 Score=59.06 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..++|.|++|+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999988
No 317
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.39 E-value=0.0015 Score=59.81 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|+||+||||+++.+++.+ ++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~------~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY------GIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS------SCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCcEEeH
Confidence 48899999999999999999887 6665544
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.39 E-value=0.0024 Score=60.08 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC---CeEEEEEccccCCChHHHHHHHHHHHhcCC-----CChHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGD---KFVYVEMNALSIPEPKRAYSRILELLLNVD-----APPEQAKAML 234 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~---~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~-----~~~~~~~~~l 234 (520)
.+..+.|.||+|+|||||++.++..+....+. ...+.++.......+.....+.+.-..... .......+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Q ss_pred HHHHcCC----------------------------CCceEEEEcCC-ccccccChHHHHHHHHhcCCCCCcEEEEEE
Q psy17062 235 ERHFTRP----------------------------HGPCVLLIDEL-DYLCNKRQDVIYNILEYLNKPKSRLIILCI 282 (520)
Q Consensus 235 ~~~~~~~----------------------------~~~~vLiiDEi-d~l~~~~~~~L~~ll~~~~~~~~~v~vI~~ 282 (520)
...+... ..|.+|++||. -.|+......+..++.......+..+++.+
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
No 319
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.38 E-value=0.011 Score=58.46 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcC----CC--Ch
Q psy17062 154 FLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNV----DA--PP 227 (520)
Q Consensus 154 ~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~----~~--~~ 227 (520)
.+.-...-+.+..++|.|++|+|||+|++.+++.+..... ++.+|++-+.+-.. -...+...+.+. .. +.
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~-~v~~I~~lIGER~~---Ev~~~~~~~~~~vV~atadep~ 239 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP-DCVLMVLLIDERPE---EVTEMQRLVKGEVVASTFDEPA 239 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT-TSEEEEEEESSCHH---HHHHHHTTCSSEEEEECTTSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC-CeeEEEEEecCChH---HHHHHHHHhCeEEEEeCCCCCH
Confidence 3444444567788999999999999999999998866533 55566554332211 111112221100 00 00
Q ss_pred H-H-----HHHHHHHHHcCCCCceEEEEcCCcccccc
Q psy17062 228 E-Q-----AKAMLERHFTRPHGPCVLLIDELDYLCNK 258 (520)
Q Consensus 228 ~-~-----~~~~l~~~~~~~~~~~vLiiDEid~l~~~ 258 (520)
. + ..-.+-+.|...+...+||+|++..+...
T Consensus 240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A 276 (422)
T 3ice_A 240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 276 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHH
Confidence 0 0 11112334444578899999999877653
No 320
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.37 E-value=0.012 Score=54.20 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCceEEEEcCCccccccC-hHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNKR-QDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~-~~~L~~ll~~~ 270 (520)
....+|||||+|.+.... ...+..++...
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHS
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhC
Confidence 557899999999987653 45566666544
No 321
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.37 E-value=0.016 Score=56.67 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEI 192 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~ 192 (520)
..+..+.|.||+|+||||+++.++..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999887653
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.36 E-value=0.0028 Score=61.52 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
..++|+||+|+|||+++..+++.+ +..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l------~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL------PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS------CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc------CCcEEeccchh
Confidence 468999999999999999999988 77888777653
No 323
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.36 E-value=0.003 Score=57.39 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=49.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCh----HHHHHHHHHHH--hcCCCChHHHHHHHHHHHc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEP----KRAYSRILELL--LNVDAPPEQAKAMLERHFT 239 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~----~~~~~~i~~~l--~g~~~~~~~~~~~l~~~~~ 239 (520)
.++|.||||+||+|.++.+++.+ ++.. ++..++.-. ..-+......+ .|..++..-....+...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g~~~--istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------GFVH--ISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CCEE--EEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------CCeE--EcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence 47899999999999999999987 6654 444332100 00000011111 2555555445555555554
Q ss_pred CCCCceEEEEcCCccccccChHHHHHHHHh
Q psy17062 240 RPHGPCVLLIDELDYLCNKRQDVIYNILEY 269 (520)
Q Consensus 240 ~~~~~~vLiiDEid~l~~~~~~~L~~ll~~ 269 (520)
.. .-++||-+..-.. ....|...+..
T Consensus 74 ~~---~~~ilDGfPRt~~-Qa~~l~~~l~~ 99 (206)
T 3sr0_A 74 KH---GNVIFDGFPRTVK-QAEALDEMLEK 99 (206)
T ss_dssp SS---SCEEEESCCCSHH-HHHHHHHHHHH
T ss_pred cC---CceEecCCchhHH-HHHHHHhhHHH
Confidence 32 2367787754322 12345555553
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.35 E-value=0.0056 Score=54.58 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+.|.|++|+||||+++.+++.+... ++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~---g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK---GYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeC
Confidence 47899999999999999999988654 566665543
No 325
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.34 E-value=0.0025 Score=64.51 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~ 186 (520)
.....+|.|+||+|||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445688999999999999988774
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.34 E-value=0.0037 Score=61.78 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 477 RFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 477 ~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
..++..+...++..+++.||+|||||+|++.||+.++.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 34455566778899999999999999999999999987543
No 327
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.34 E-value=0.012 Score=61.62 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHH------HHHh--cC---------C
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL------ELLL--NV---------D 224 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~------~~l~--g~---------~ 224 (520)
..+..++|.|++|+|||++++.++..+... +..++++...+. +..+...+. ..+. |. .
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~--~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEES--RAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSC--HHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCC--HHHHHHHHHHcCCCHHHHHhCCCEEEEEecccc
Confidence 456679999999999999999999887653 334455544322 223322210 0000 00 0
Q ss_pred CChHHHHHHHHHHHcCCCCceEEEEcCCcccccc-----ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 225 APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK-----RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~-----~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
.+..+....+..... ...|.+||||=+..|+.. ....++.++.... ..++.+|.++...
T Consensus 354 LS~g~~q~~~~a~~l-~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 354 AGLEDHLQIIKSEIN-DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHH-TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHH-hhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 111121111111111 157899999966666665 4556777776553 2245566666654
No 328
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.33 E-value=0.0028 Score=66.95 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHH
Q psy17062 466 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMR 510 (520)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~ 510 (520)
.||+.++..+...+...- ......|.++|++|+|||+||+++++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 399999999988885431 22345689999999999999999997
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.33 E-value=0.0052 Score=59.03 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhh--cCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 472 FQSIHRFLLSKI--SQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 472 ~~~l~~~~~~~~--~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++.|...+.... ....+.-|.+.||+|+|||+||+.|+..+...
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 444444444321 23445568999999999999999999999753
No 330
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.33 E-value=0.02 Score=51.47 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=20.1
Q ss_pred CCceEEEEcCCcccccc-ChHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNK-RQDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~-~~~~L~~ll~~~ 270 (520)
....+|||||+|.+... ....+..++...
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 174 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTL 174 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHS
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhC
Confidence 56789999999988764 344555555544
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0058 Score=55.64 Aligned_cols=40 Identities=10% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
..+..++|.|++|+||||+++.+++.+.... +..+++++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~--g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR--RVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccc--CCcEEEECC
Confidence 4556799999999999999999999986222 555666664
No 332
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.30 E-value=0.0026 Score=67.70 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 461 VPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.+..+.||+.++..+...+... ......|+++||+|+|||+||+.+++..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CCCeecccHHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHhch
Confidence 3457899999999988777632 2234568999999999999999998754
No 333
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.29 E-value=0.011 Score=53.55 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 190 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~ 190 (520)
.-++-|.+.+..++. +.++++.+|+|+|||.++..++..+..
T Consensus 33 ~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 33 QLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345555555554442 256999999999999999888776543
No 334
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.28 E-value=0.0022 Score=63.31 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.-++++||||||||+||.++|..++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445899999999999999999998875
No 335
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.27 E-value=0.0019 Score=58.55 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc-ccCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA-LSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRP 241 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~-~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~l~~~~~~~ 241 (520)
.+...+++|+-|+||||.+-..+..+... +..++.+.. .+... ....|.+.+ |....... ......++...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D~R~---~~~~I~Sr~-G~~~~a~~-v~~~~di~~~i 98 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAIDDRY---HKEKVVSHN-GNAIEAIN-ISKASEIMTHD 98 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--------------CBT-TBCCEEEE-ESSGGGGGGSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccCCcc---hhhhHHHhc-CCceeeEE-eCCHHHHHHHH
Confidence 45678899999999999555555665544 333333322 11110 001111111 21111000 00011122221
Q ss_pred -CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 242 -HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 242 -~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
....+|+|||++.+....-+.+..+.+ .++.||+.+=+.+
T Consensus 99 ~~~~dvV~IDEaQFf~~~~v~~l~~la~------~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 99 LTNVDVIGIDEVQFFDDEIVSIVEKLSA------DGHRVIVAGLDMD 139 (219)
T ss_dssp CTTCSEEEECCGGGSCTHHHHHHHHHHH------TTCEEEEEEESBC
T ss_pred hcCCCEEEEechhcCCHHHHHHHHHHHH------CCCEEEEeecccc
Confidence 467899999999998654445555543 2345555554444
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.24 E-value=0.0023 Score=59.71 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.++.-++|.||||+|||+|++.|+...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~ 54 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 366779999999999999999999543
No 337
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.23 E-value=0.019 Score=51.73 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=20.4
Q ss_pred CCceEEEEcCCcccccc-ChHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNK-RQDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~-~~~~L~~ll~~~ 270 (520)
....+|||||+|.+... ....+..++...
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 172 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSAT 172 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTS
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhC
Confidence 56789999999988654 344566666543
No 338
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.23 E-value=0.0027 Score=62.75 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++.-+++|||||+|||+||..+|..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45558999999999999999999887653
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.23 E-value=0.0025 Score=58.21 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|++|+||||+++.+++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~------g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY------GIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH------CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCeEEeH
Confidence 48999999999999999999988 7666554
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.21 E-value=0.0047 Score=56.15 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.+..++|.|++|+||||+++.+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999998654
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.21 E-value=0.0015 Score=63.70 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.-|+|.||+|||||+||..||+.|.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 334699999999999999999999875
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.20 E-value=0.0032 Score=60.81 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.7
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
+...++..+.|+||+|+|||+|++.|+..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456788889999999999999999999876
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.20 E-value=0.0039 Score=56.16 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
.++|.|++|+||||+++.+++.+ +..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l------~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL------GYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH------CCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhc------CCcEE
Confidence 48899999999999999999998 66554
No 344
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.19 E-value=0.013 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||++++.+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998863
No 345
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.18 E-value=0.003 Score=60.32 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.-++|+||||+|||+|++.+|..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5566899999999999999999987653
No 346
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.006 Score=61.81 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCCCCChHHHHHHHHHHHHhhhcC---------CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 462 PESLPCREAEFQSIHRFLLSKISQ---------STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
...+...+..+..+...+...++. .++.-|+|.||+|+|||+++..||..+.+.
T Consensus 62 ~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 62 PSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred cccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 334444444555555555544432 235668999999999999999999999764
No 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.16 E-value=0.0081 Score=59.15 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+..+.|.||+|+|||||++.++..+.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 4566789999999999999999997653
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.16 E-value=0.0047 Score=56.77 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
..+.|.|++|+||||+++.+++.+ +++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~------g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL------QWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH------TCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCcc
Confidence 468999999999999999999988 76554
No 349
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.15 E-value=0.0035 Score=62.03 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++.-++++||||+|||+||..+|..+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 55568999999999999999999988753
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.15 E-value=0.044 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998853
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.14 E-value=0.0035 Score=61.52 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHhcCCCChH
Q psy17062 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228 (520)
Q Consensus 149 ~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~g~~~~~~ 228 (520)
..+.+.+.-.+..+.. ++|.||+|+||||+++.++..+.. ....+.++..... .......
T Consensus 158 ~~~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g~~~~----~~g~i~i~~~~e~--------------~~~~~~~ 217 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEI--------------VFKHHKN 217 (330)
T ss_dssp HHHHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGGGSCT----TSCEEEEESSCCC--------------CCSSCSS
T ss_pred HHHHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhCCCcC----CCcEEEECCeecc--------------ccccchh
Q ss_pred H------HHHHHHHHHcCC--CCceEEEEcCCccccccChHHHHHHHHhcCCCCCcEEEEEEEcCCC
Q psy17062 229 Q------AKAMLERHFTRP--HGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMD 287 (520)
Q Consensus 229 ~------~~~~l~~~~~~~--~~~~vLiiDEid~l~~~~~~~L~~ll~~~~~~~~~v~vI~~tn~~~ 287 (520)
. .....+..+..+ ..|.+|++||+-. ..+..++.... .++..+|.++...+
T Consensus 218 ~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~------~e~~~~l~~~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 218 YTQLFFGGNITSADCLKSCLRMRPDRIILGELRS------SEAYDFYNVLC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp EEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS------THHHHHHHHHH--TTCCCEEEEEECSS
T ss_pred EEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh------HHHHHHHHHHh--cCCCEEEEEEcccH
No 352
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.13 E-value=0.0036 Score=60.33 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+..++.-++|.||||+|||+|++.||..+...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45577779999999999999999999988654
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.12 E-value=0.0047 Score=56.83 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.++|.|++|+||||+++.+++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l------g~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY------SLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH------TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCeEEch
Confidence 48999999999999999999988 7665544
No 354
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.12 E-value=0.0029 Score=57.20 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+.|.|++|+||||+++.+++ + ++.++..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~------g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L------GAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T------TCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C------CCEEEEccH
Confidence 588999999999999999998 6 777776543
No 355
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.017 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHH-HHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHA-VMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~-la~~l 188 (520)
.++++.+|+|+|||.+... ++..+
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 5699999999999987433 33444
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.12 E-value=0.0016 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.+|+|.||||+|||+||.+||+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 456799999999999999999997654
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0045 Score=58.06 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
+..+.|.|++|+||||+++.+++.+ +..++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l------g~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL------GYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH------TCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc------CCcEEeC
Confidence 4579999999999999999999998 7776654
No 358
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0047 Score=59.34 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
+..++|.||+|+|||+|+..+++.+ +..+|..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL------PVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS------CEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC------CCcEEecccccc
Confidence 4568899999999999999999987 777777666543
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0069 Score=61.42 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHHHhhhcC--------CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 464 SLPCREAEFQSIHRFLLSKISQ--------STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~--------~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+...+..+..+...+...+.. .++..|++.||||+|||+++-.||..|++.
T Consensus 68 ~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 68 GISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 3333444445555555444431 246679999999999999999999998764
No 360
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.08 E-value=0.012 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.07 E-value=0.0033 Score=61.29 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALS 205 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~ 205 (520)
+..++|.||+|+|||+|+..+|+.+ +..+|..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF------PLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS------CEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC------CCcEEcccccc
Confidence 3579999999999999999999988 77777666653
No 362
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0058 Score=56.55 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
+..+.|.||+|+||||+++.+++.+ ++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l------g~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL------GARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH------TCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------CCCccc
Confidence 3579999999999999999999988 765543
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.05 E-value=0.003 Score=57.24 Aligned_cols=26 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..++|.||+|+||||+++.+++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999999876
No 364
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0042 Score=55.05 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..+.|.||+|+||||+++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999875
No 365
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.04 E-value=0.0074 Score=65.00 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 145 EAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 145 ~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
+.|.+.+...|.. ....||.||||||||+++-.+...+...
T Consensus 192 ~~Q~~AV~~al~~------~~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 192 TSQKEAVLFALSQ------KELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp HHHHHHHHHHHHC------SSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC------CCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 5666667666642 2468999999999999888777777654
No 366
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.04 E-value=0.028 Score=57.12 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
.+..++|.|++|+||||++..++..+.... +..+..+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecCCC
Confidence 356788999999999999999999997652 334555555443
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.004 Score=56.47 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
+..++|.|++|+||||+++.+++.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999883
No 368
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.03 E-value=0.048 Score=50.56 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCceEEEEcCCccccccC-hHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNKR-QDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~-~~~L~~ll~~~ 270 (520)
....+|||||+|.+.... ...+..++...
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 204 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQI 204 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTS
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhC
Confidence 567799999999987753 44556666544
No 369
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0055 Score=57.06 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.++.-++++|+||+|||++|-.+|.+...+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~ 57 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356668999999999999999888665443
No 370
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.00 E-value=0.004 Score=59.94 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
+++.+++|||||||||+||-.++.++++.
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34468999999999999998888887765
No 371
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.99 E-value=0.011 Score=57.91 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.++.-+.|.||+|+|||++++.||..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999988654
No 372
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.98 E-value=0.039 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~ 187 (520)
.++|.|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 373
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.98 E-value=0.0039 Score=63.28 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..++|+|+||+||||+++.+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999866
No 374
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.98 E-value=0.0045 Score=61.26 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.+++.+++.||+|+|||++.++++..+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 356679999999999999999999988764
No 375
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.96 E-value=0.017 Score=52.77 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=20.3
Q ss_pred CCceEEEEcCCccccccC-hHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNKR-QDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~-~~~L~~ll~~~ 270 (520)
....+|||||+|.+.... ...+..++...
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 456789999999987643 44566666644
No 376
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.95 E-value=0.024 Score=57.32 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
+..++|.|++|+||||++..++..+... +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 5578899999999999999999998765 445555555
No 377
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.95 E-value=0.0048 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+..+.|.||+|+||||+++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999876
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.95 E-value=0.0051 Score=55.21 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
..+.|+|++|+||||+++.+++.+ +++++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l------g~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY------GAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH------CCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc------CCEEEECc
Confidence 468899999999999999999987 77776544
No 379
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.93 E-value=0.0044 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..++|+||+|+|||||++.+.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998875
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.92 E-value=0.005 Score=55.87 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.+..++|.|++|+||||+++.+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 34679999999999999999999988554
No 381
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.91 E-value=0.0054 Score=57.34 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..+.|.|++|+||||+++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999887
No 382
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.91 E-value=0.021 Score=54.91 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
.+..+.|.|++|+||||++..++..+... +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 34578899999999999999999998765 334444444
No 383
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.89 E-value=0.0052 Score=59.13 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
..++|.||+|+|||+++..+++.+ +..+|..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL------NGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT------TEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC------ccceeecCcc
Confidence 468899999999999999999987 6666666654
No 384
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.86 E-value=0.042 Score=51.26 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=20.2
Q ss_pred CCceEEEEcCCcccccc-ChHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNK-RQDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~-~~~~L~~ll~~~ 270 (520)
....+|||||+|.+... ....+..++...
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~ 214 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVI 214 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSS
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhC
Confidence 45679999999988764 344566666644
No 385
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.84 E-value=0.0051 Score=65.04 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
...+++.||||||||+++++++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999988765
No 386
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.84 E-value=0.021 Score=58.11 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATV-HAVMRKLKQ 190 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la-~~la~~l~~ 190 (520)
+.++++.||+|+|||.++ ..+++.+..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~ 29 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK 29 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 467999999999999986 556655443
No 387
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.0064 Score=58.62 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
++..++|.||+|+|||+++..||..+...-+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999875434
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.83 E-value=0.0067 Score=56.97 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYV 199 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i 199 (520)
.+..+.|.||+|+||||+++.+++.| ++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L------g~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL------NWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT------TCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc------CCCcC
Confidence 44679999999999999999999988 76554
No 389
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.83 E-value=0.0061 Score=58.95 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.-+.|.||+|||||++++.||..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4567899999999999999999988764
No 390
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.82 E-value=0.0063 Score=54.87 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678999999999999999999865
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.78 E-value=0.012 Score=57.18 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.1
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++.-|.+.||+|+|||+|++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45566689999999999999999998875
No 392
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.77 E-value=0.023 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~ 186 (520)
.-.|+|.|.+|+|||++++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35699999999999999999875
No 393
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.77 E-value=0.0077 Score=55.90 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=26.2
Q ss_pred CCceEEEEcCCcccccc-ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 242 HGPCVLLIDELDYLCNK-RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~-~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
....+|||||+|.+... ....+..++.... ....+|+.|.+.
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~---~~~~~i~~SAT~ 214 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLN---TSIQVVLLSATM 214 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCC---CCCeEEEEEEec
Confidence 45689999999988654 3455666666442 234455545443
No 394
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.76 E-value=0.0062 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.-+++|||||+|||+||..+|..+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH
Confidence 5556899999999999999999988865
No 395
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.76 E-value=0.035 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~ 186 (520)
.++++.+|+|+|||.++-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4599999999999987655443
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0063 Score=58.83 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.++.-+.|.||+|+|||++++.||..+...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 456678999999999999999999988753
No 397
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.75 E-value=0.062 Score=51.08 Aligned_cols=52 Identities=6% Similarity=-0.056 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 142 PCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 142 ~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
.-+.-|.+.+..++.. ...+|.+|+|+|||.++-.++..+.... ...++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~ 164 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIV 164 (282)
T ss_dssp CCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEEC
T ss_pred CccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 3455666666666553 3468899999999999988877654432 22455543
No 398
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.74 E-value=0.031 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
-.++|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999998776654
No 399
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.74 E-value=0.007 Score=62.63 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=37.1
Q ss_pred HhhcCCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 453 RESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
++.|.....+.....+.+....+...... ..+.+..|+|.|++|||||++|++||+.|..
T Consensus 362 R~~Lr~G~~~P~~f~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 362 RRRLRVGGEIPEWFSYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHTCCCCTTTSCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCccccChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 33343333333333444444444433211 2345567999999999999999999999974
No 400
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0059 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..+.|.||+|+||||+++.++..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999876
No 401
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.73 E-value=0.0065 Score=58.80 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
++.-|++.||+|+|||+++..||..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 55668999999999999999999998754
No 402
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.72 E-value=0.0058 Score=61.00 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=26.8
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+++.+++.||+|+|||+++++|+..+...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 4566779999999999999999999988653
No 403
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.71 E-value=0.0067 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..+.|.|++|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999865
No 404
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.71 E-value=0.012 Score=51.53 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
...+.|.|++|+||||++..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 3568899999999999999999998765
No 405
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.70 E-value=0.0072 Score=54.35 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+..++|.||+|+|||||++.+++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999865
No 406
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.68 E-value=0.0083 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..+.|.|++|+||||+++.++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999987
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.68 E-value=0.0076 Score=54.42 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
.+.|.|++|+||||+++.+++.+ +++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l------g~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL------GVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc------CCceecc
Confidence 68999999999999999999988 7665543
No 408
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.68 E-value=0.0053 Score=60.63 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|||||+|.|+||-.
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34556777899999999999999999853
No 409
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.68 E-value=0.011 Score=57.55 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.+.-|.+.||+|||||++++.|+..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334589999999999999999998875
No 410
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.67 E-value=0.058 Score=58.78 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHHHHHHHHhCCCeEEEEEccccCCChHHHHHHHHHHHh--cCCC---------------
Q psy17062 164 TGCMYISGVPGTGKTATV-HAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLL--NVDA--------------- 225 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la-~~la~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~i~~~l~--g~~~--------------- 225 (520)
+.++++.||+|+|||+++ ..+++.+... +..++++..... -..+.+..+ ..+. |...
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~ra-La~q~~~~~-~~l~~~g~~v~~~~G~~~~~~~~~~ 113 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKA-LAEEKFQEF-QDWEKIGLRVAMATGDYDSKDEWLG 113 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGG-GHHHHHHHT-GGGGGGTCCEEEECSCSSCCCGGGG
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHH-HHHHHHHHH-HHHHhcCCEEEEecCCCCccccccC
Confidence 478999999999999988 4455555433 455666554321 112222222 1111 1100
Q ss_pred -------ChHHHHHHHHHHHcCCCCceEEEEcCCcccccc-ChHHHHHHHHhcCCCCCcEEEEEEEcCC
Q psy17062 226 -------PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK-RQDVIYNILEYLNKPKSRLIILCIANTM 286 (520)
Q Consensus 226 -------~~~~~~~~l~~~~~~~~~~~vLiiDEid~l~~~-~~~~L~~ll~~~~~~~~~v~vI~~tn~~ 286 (520)
+.......+...........+|||||+|.+... +...+..++..... .+.+|+.|.+.
T Consensus 114 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl 179 (720)
T 2zj8_A 114 KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATI 179 (720)
T ss_dssp GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCC
T ss_pred CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCc
Confidence 111222222221110145689999999999873 44455555554431 45556555554
No 411
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.66 E-value=0.005 Score=57.23 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.+.||+|+|||+|.+.|+-.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34557777999999999999999999753
No 412
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.65 E-value=0.056 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~ 187 (520)
.++|.|.+|+|||+|++.+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999854
No 413
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.65 E-value=0.0079 Score=59.32 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.++.-+++|||||+|||+||..+|...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344558999999999999999999864
No 414
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.65 E-value=0.0051 Score=57.27 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|++.|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567778999999999999999999753
No 415
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.64 E-value=0.03 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.++++.+|+|+|||.++-..+-.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999999876655443
No 416
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.64 E-value=0.015 Score=55.73 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh--hcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 148 FQSIHRFLLSKI--SQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 148 i~~l~~~L~~~~--~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
+..|.+.+.... ..+.+..+.|.|++|+||||+++.+++.+...
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 444444444421 23445678899999999999999999998754
No 417
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.63 E-value=0.024 Score=60.20 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCC----------------CeEEEEEccccCCChHHHHHHHHHHHhc-CC
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGD----------------KFVYVEMNALSIPEPKRAYSRILELLLN-VD 224 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~----------------~~~~i~v~~~~~~~~~~~~~~i~~~l~g-~~ 224 (520)
.++..+.|.||+|+||||+++.++..+....+. ...+-++......-+..+...+. +.. ..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~--~~~~~~ 444 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA--YAAEGE 444 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHh--ccCCCC
Q ss_pred CChHHHHHHHHHH---------------------------------HcCC--CCceEEEEcCC-ccccccChHHHHHHHH
Q psy17062 225 APPEQAKAMLERH---------------------------------FTRP--HGPCVLLIDEL-DYLCNKRQDVIYNILE 268 (520)
Q Consensus 225 ~~~~~~~~~l~~~---------------------------------~~~~--~~~~vLiiDEi-d~l~~~~~~~L~~ll~ 268 (520)
.......+.+... +..+ ..|.||++||. -.|+......+.+.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Q ss_pred hcCCCCCcEEEEEEEcC
Q psy17062 269 YLNKPKSRLIILCIANT 285 (520)
Q Consensus 269 ~~~~~~~~v~vI~~tn~ 285 (520)
.... +..+|.++++
T Consensus 525 ~~~~---~~tvi~itH~ 538 (582)
T 3b5x_A 525 ELQK---NKTVLVIAHR 538 (582)
T ss_pred HHcC---CCEEEEEecC
No 418
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.01 Score=59.17 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEcc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~ 203 (520)
..++|.||+|+|||+++..+++.+ +..+|..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~------~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF------NGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH------TEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHC------CCeEeecCc
Confidence 458899999999999999999998 666665554
No 419
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.62 E-value=0.012 Score=58.11 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHhhhcCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHh
Q psy17062 479 LLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516 (520)
Q Consensus 479 ~~~~~~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~ 516 (520)
++...-...+.++++.||+|||||+|+..||+.+..+.
T Consensus 166 ID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 166 IDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp HHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred hhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34445567888999999999999999999999988654
No 420
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.62 E-value=0.069 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 421
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.62 E-value=0.0043 Score=62.98 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.+.-|+|.||||+|||++|+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 55669999999999999999998754
No 422
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.61 E-value=0.041 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~ 186 (520)
.+.++++.+|+|+|||.++-..+-
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 446799999999999987665443
No 423
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.60 E-value=0.0067 Score=59.33 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
.++.-+++|||||+|||++|..+|..++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 3556689999999999999999998754
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.60 E-value=0.037 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||++++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998864
No 425
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.58 E-value=0.0057 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998774
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.58 E-value=0.0089 Score=58.40 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
..++|.||+|+|||+++..+++.+ +..++..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l------~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF------NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT------TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc------CCceeccccc
Confidence 368999999999999999999988 7666666554
No 427
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.58 E-value=0.0062 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..++|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999976
No 428
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.56 E-value=0.032 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999998863
No 429
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.55 E-value=0.0047 Score=56.98 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.4
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.++|+-.
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456677899999999999999999753
No 430
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.036 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35999999999999999998864
No 431
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.53 E-value=0.019 Score=52.88 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=20.1
Q ss_pred CCceEEEEcCCcccccc--ChHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNK--RQDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~--~~~~L~~ll~~~ 270 (520)
....+|||||+|.+... -...+..++...
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~ 195 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSL 195 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHS
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhC
Confidence 34569999999999764 345566666644
No 432
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.51 E-value=0.0059 Score=57.72 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|.++|+-.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557777899999999999999999753
No 433
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.51 E-value=0.0069 Score=59.90 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|||||+|.|.||--
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 34556777899999999999999999853
No 434
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.51 E-value=0.0071 Score=57.37 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|.+.|+-.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33567778999999999999999999864
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.50 E-value=0.013 Score=54.32 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
..+..+.|.|++|+||||+++.+++.+ ++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l------g~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF------GFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH------CCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc------CCceec
Confidence 345679999999999999999999988 766553
No 436
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.50 E-value=0.0083 Score=62.89 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=25.8
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++..|.|.||+|||||+|+++||..+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44667799999999999999999999986
No 437
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.50 E-value=0.016 Score=56.32 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEEccccC
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEI-GDKFVYVEMNALSI 206 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~-~~~~~~i~v~~~~~ 206 (520)
.+..+.|.||+|+||||+++.+...+.... .....++..+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 344688999999999999999998874211 11345555555443
No 438
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.50 E-value=0.0069 Score=60.25 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|||||+|.|.||--
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 34557777899999999999999999853
No 439
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.041 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998864
No 440
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.48 E-value=0.0054 Score=56.07 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
..++.-+.|.||+|+|||+|.++|+-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456777999999999999999999753
No 441
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.076 Score=57.77 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH-HHHHHHhCCCeEEEEEcc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVM-RKLKQEIGDKFVYVEMNA 203 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la-~~l~~~~~~~~~~i~v~~ 203 (520)
+.++++.||+|+|||+++...+ +.+... +...+++..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeC
Confidence 4789999999999999985544 444322 445565544
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.46 E-value=0.009 Score=59.07 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
.++.-++|.||+|+|||++++.||..+...
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 456679999999999999999999988753
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.016 Score=53.81 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccc
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNAL 204 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~ 204 (520)
++..++|+|+||+|||+++..++....... +..+++++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc
Confidence 456799999999999999999876543332 3455555543
No 444
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0067 Score=54.85 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17062 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVE 200 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~ 200 (520)
.+.|.|++|+||||+++.++. + +..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccc
Confidence 578999999999999999987 4 666554
No 445
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.46 E-value=0.0066 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
..++|.||+|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 35789999999999999999873
No 446
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.46 E-value=0.0064 Score=57.49 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.0
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.++|+-.
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3567777999999999999999999753
No 447
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.0073 Score=59.78 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.1
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|||||+|.|.||--
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34456777899999999999999999853
No 448
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.45 E-value=0.0084 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+..+.|.||.|+||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566678999999999999999999987
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.43 E-value=0.066 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|.+|+|||+|++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998753
No 450
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.43 E-value=0.071 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.++++.+|+|+|||.++...+-..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 569999999999998776655443
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.43 E-value=0.077 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35999999999999999998753
No 452
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.42 E-value=0.05 Score=60.54 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~ 186 (520)
+..++|+||.|+||||+++.++-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999843
No 453
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.41 E-value=0.015 Score=62.50 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy17062 490 CMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 490 ~iLLyGPpGtGKT~lAkalA~~ 511 (520)
-.|+.||||||||.++-++...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999655444433
No 454
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.41 E-value=0.0077 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.9
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|||||+|.|.||--
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 3557777899999999999999999853
No 455
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.41 E-value=0.024 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.0
Q ss_pred cCCCCeEEEEcCCCCcHHHHHH-HHHHHH
Q psy17062 161 QSTTGCMYISGVPGTGKTATVH-AVMRKL 188 (520)
Q Consensus 161 ~~~~~~lLl~G~~GtGKT~la~-~la~~l 188 (520)
.+.+.++++.+|+|+|||.+.. .++..+
T Consensus 128 ~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 128 AEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp SSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3445789999999999998743 344443
No 456
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.41 E-value=0.0067 Score=59.87 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.7
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|||||+|.|+||--
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3557777899999999999999999853
No 457
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.40 E-value=0.036 Score=61.44 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~ 187 (520)
+..++|+||.|+||||+++.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 457999999999999999998754
No 458
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.40 E-value=0.066 Score=56.82 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 141 LPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 141 l~gr~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
+.-|..|...+...+..... ....++|.+++|+|||.++-.++..+...
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~--~~~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ--GKKRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT--TCSEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHhc--CCCceEEEecCCCChHHHHHHHHHHHHhc
Confidence 35677777777766655322 23568999999999999998888887654
No 459
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.40 E-value=0.035 Score=52.32 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCceEEEEcCCcccccc-ChHHHHHHHHhc
Q psy17062 242 HGPCVLLIDELDYLCNK-RQDVIYNILEYL 270 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~-~~~~L~~ll~~~ 270 (520)
....+|||||+|.+... ....+..++...
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhC
Confidence 55689999999998765 345566666644
No 460
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.031 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.++..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 461
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.38 E-value=0.029 Score=58.00 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 486 STTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 486 ~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
..+..|+|.|+||+|||+++.+||..+.+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345579999999999999999999998764
No 462
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.38 E-value=0.011 Score=54.29 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+..+.|.||+|+|||||++.++..+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 355679999999999999999999876
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.35 E-value=0.0091 Score=62.32 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKLKQ 514 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l~~ 514 (520)
.+.-|+|.|+||+|||++|+.||+.|.-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456899999999999999999998853
No 464
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.35 E-value=0.0097 Score=61.88 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 487 TTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 487 ~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.+.++++.||+|+|||+++++|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 66779999999999999999998765
No 465
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.35 E-value=0.076 Score=58.19 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLK 189 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~ 189 (520)
.+..++|+||.|+||||+++.++....
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 345789999999999999999997643
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.35 E-value=0.0064 Score=57.35 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
..++.-+.|.||+|+|||+|.|.|+-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456777899999999999999999753
No 467
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.34 E-value=0.033 Score=57.27 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 144 r~~ei~~l~~~L~~~~~~~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..|.+.+..++.. ..++|.+|+|+|||.++-.++..+
T Consensus 95 ~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc-------CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 44455554444322 459999999999999998888776
No 468
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.34 E-value=0.01 Score=54.23 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v 201 (520)
..+.|.|++|+||||+++.+++ + +..++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l------g~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L------GINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T------TCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c------CCEEEEc
Confidence 4689999999999999999987 5 7766654
No 469
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.34 E-value=0.052 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
.++++.+|+|+|||.++...+-.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 56999999999999877666544
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.34 E-value=0.024 Score=51.67 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
+..+.|.|++|+||||+++.+++.+... +..++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~---~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER---GIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCccccc
Confidence 4568899999999999999999999665 45555443
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.33 E-value=0.0071 Score=59.81 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=24.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++.-++|+||||+|||+|++.+|-.++
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556689999999999999999998763
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.33 E-value=0.0075 Score=56.58 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.2
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|.+.|+-.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457777999999999999999999863
No 473
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.33 E-value=0.057 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|.+|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 474
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.33 E-value=0.011 Score=56.45 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEc
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~ 202 (520)
+..+.|.|++|+||||+++.++ .+ ++.++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~l------g~~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NL------GAYIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HH------TCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HC------CCcEEehh
Confidence 3569999999999999999999 45 77766543
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.32 E-value=0.0075 Score=57.31 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.6
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|++.|+-.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567778999999999999999999754
No 476
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.32 E-value=0.022 Score=57.31 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCceEEEEcCCccccccC-hHHHHHHHHhcCCCCCcEEEEEEEcC
Q psy17062 242 HGPCVLLIDELDYLCNKR-QDVIYNILEYLNKPKSRLIILCIANT 285 (520)
Q Consensus 242 ~~~~vLiiDEid~l~~~~-~~~L~~ll~~~~~~~~~v~vI~~tn~ 285 (520)
....+|||||+|.+.... ...+..++... .....+|+.|.+
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT 223 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKL---NSNTQVVLLSAT 223 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTS---CTTCEEEEECSC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhC---CCCCeEEEEEEe
Confidence 456799999999986553 34555665543 223444554444
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.32 E-value=0.0065 Score=56.66 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.|.|+-.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456777899999999999999999753
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.32 E-value=0.0088 Score=57.20 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy17062 488 TGCMYISGVPGTGKTATVHAVMR 510 (520)
Q Consensus 488 ~~~iLLyGPpGtGKT~lAkalA~ 510 (520)
+..|.|.|+||+|||++|+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999983
No 479
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.31 E-value=0.0065 Score=56.20 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.0
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.+.|+..
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557778999999999999999999754
No 480
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.31 E-value=0.012 Score=57.18 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLK 513 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~ 513 (520)
..++.-++++|+||+|||++|..+|..+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45666799999999999999999997765
No 481
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.31 E-value=0.071 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||++++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998864
No 482
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.31 E-value=0.019 Score=55.54 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcC---CCCCcEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 470 AEFQSIHRFLLSKISQ---STTGCMYISGVPGTGKTATVHAVMRKL 512 (520)
Q Consensus 470 ~~~~~l~~~~~~~~~~---~~~~~iLLyGPpGtGKT~lAkalA~~l 512 (520)
.....+.......+.. ..+.-|.|.||+|+|||+|++.|+..+
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 59 SSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp HHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
No 483
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.31 E-value=0.014 Score=59.33 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=28.3
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHhc
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~~~ 517 (520)
....++.++|+||+|||||+|+..|+.......+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 3445678999999999999999999998876544
No 484
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.30 E-value=0.0077 Score=56.85 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|.+.|+-.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567778999999999999999999854
No 485
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.29 E-value=0.011 Score=60.58 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=26.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 485 QSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515 (520)
Q Consensus 485 ~~~~~~iLLyGPpGtGKT~lAkalA~~l~~~ 515 (520)
...+.-++|.||+|+|||+|++.||..+...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 3456678999999999999999999988753
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.29 E-value=0.0078 Score=56.65 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.9
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.++|+-.
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3557777999999999999999999753
No 487
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.29 E-value=0.017 Score=55.83 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKLKQE 191 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l~~~ 191 (520)
.+..+.|.||+|+||||+++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999988765
No 488
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.099 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 489
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.27 E-value=0.008 Score=56.96 Aligned_cols=29 Identities=21% Similarity=0.487 Sum_probs=24.3
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.|.||+|+|||+|.+.|+-.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34557777999999999999999999753
No 490
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.27 E-value=0.0068 Score=56.62 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=24.3
Q ss_pred hcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 483 ISQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 483 ~~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
+...++.-+.+.||+|+|||+|.++|+-.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44557777999999999999999999754
No 491
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.26 E-value=0.01 Score=53.83 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 162 STTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 162 ~~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
..+..+.|.||+|+||||+++.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999876
No 492
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.25 E-value=0.11 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
..++|.|++|+|||+|++.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998854
No 493
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.25 E-value=0.0067 Score=57.72 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=23.8
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|+++|+-.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3557777999999999999999999753
No 494
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.24 E-value=0.0097 Score=55.84 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 163 TTGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 163 ~~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
.+..+.|.|++|+||||+++.+++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999987
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.24 E-value=0.0072 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy17062 164 TGCMYISGVPGTGKTATVHAVMRKL 188 (520)
Q Consensus 164 ~~~lLl~G~~GtGKT~la~~la~~l 188 (520)
+..++|.||+|+|||+++..+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999999874
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.24 E-value=0.031 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
..++|.|++|+|||+|++.++..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999863
No 497
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.24 E-value=0.041 Score=47.20 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17062 166 CMYISGVPGTGKTATVHAVMR 186 (520)
Q Consensus 166 ~lLl~G~~GtGKT~la~~la~ 186 (520)
.++|.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.24 E-value=0.029 Score=50.42 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHhCCCeEEEEEccccC
Q psy17062 167 MYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSI 206 (520)
Q Consensus 167 lLl~G~~GtGKT~la~~la~~l~~~~~~~~~~i~v~~~~~ 206 (520)
+.|-|.-|+||||.++.+++.|... +..++...-...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~---g~~v~~treP~~ 39 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR---GKKVILKREPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCC
Confidence 6789999999999999999999876 556665544433
No 499
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.24 E-value=0.0071 Score=56.64 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.9
Q ss_pred cCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q psy17062 484 SQSTTGCMYISGVPGTGKTATVHAVMRK 511 (520)
Q Consensus 484 ~~~~~~~iLLyGPpGtGKT~lAkalA~~ 511 (520)
...++.-+.|.||+|+|||+|.+.|+-.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557778999999999999999999754
No 500
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.23 E-value=0.074 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17062 165 GCMYISGVPGTGKTATVHAVMRK 187 (520)
Q Consensus 165 ~~lLl~G~~GtGKT~la~~la~~ 187 (520)
-.++|.|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
Done!