RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17062
(520 letters)
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 88.7 bits (218), Expect = 2e-20
Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 9/231 (3%)
Query: 129 RESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMR 186
S VP+ LP RE + Q + L + + + G PGTGKT T+ +
Sbjct: 6 DSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 65
Query: 187 KLKQEIGDKFVYVEMNALSIP--EPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGP 244
K + +FVY+ + ++ A+L H
Sbjct: 66 LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125
Query: 245 CVLLIDELDYLCNKRQDVIYNILEYLNK-PKSRLIILCIANTMDLPERTLKGKVSSRMGL 303
L++D+ L + + +K R+ ++ + + + MG
Sbjct: 126 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST-RGIMGK 184
Query: 304 TRLMFKPYDHHQLQEIVQNRLK---NNNCFHPDAVQLVARLEPPTSRSEIF 351
+ F PY Q+ +I+ +R K + D +Q++A + + +
Sbjct: 185 YVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 235
Score = 59.8 bits (143), Expect = 1e-10
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 453 RESLHLSRVPESLPCREAEFQSIHRFLLSKISQ--STTGCMYISGVPGTGKTATVHAVMR 510
S VP+ LP RE + Q + L + + + G PGTGKT T+ +
Sbjct: 6 DSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 65
Query: 511 KLKQEIGDKF 520
K + +F
Sbjct: 66 LYKDKTTARF 75
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 75.9 bits (185), Expect = 6e-16
Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 24/237 (10%)
Query: 129 RESLHLSRVPESLPCREAEFQSIHRFLLSKI-----SQSTTGCMYISGVPGTGKTATVHA 183
R + +P L R E +++ R L+++ G G GKT
Sbjct: 6 RRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF 65
Query: 184 VMRKLKQ---EIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR 240
++++ + + G +NA + P S I+ + +
Sbjct: 66 TVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 125
Query: 241 -------PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPK-----SRLIILCIANTMDL 288
+ + + +Y +L + +R+ L +A+ +
Sbjct: 126 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA 185
Query: 289 PER-TLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN---NNCFHPDAVQLVARL 341
K +L Y +L I++ R + + + P ++L++ +
Sbjct: 186 LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 242
Score = 57.8 bits (138), Expect = 7e-10
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 453 RESLHLSRVPESLPCREAEFQSIHRFLLSKI-----SQSTTGCMYISGVPGTGKTATVHA 507
R + +P L R E +++ R L+++ G G GKT
Sbjct: 6 RRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF 65
Query: 508 VMRKLKQ 514
++++ +
Sbjct: 66 TVKRVSE 72
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 52.4 bits (125), Expect = 6e-08
Identities = 35/222 (15%), Positives = 59/222 (26%), Gaps = 30/222 (13%)
Query: 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM-NALSIPEPKRAYSRILELLLNVD 224
G +GKT A++ G K + V + E A + L +
Sbjct: 156 YWLFKGPIDSGKTTLAAALLE----LCGGKALNVNLPLDRLNFELGVAIDQFLVVF---- 207
Query: 225 APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLI---ILC 281
E K P I+ LD L + + LE + K I +
Sbjct: 208 ---EDVKGTGGE---SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV 261
Query: 282 IANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARL 341
N +P+ +R E + L+ A+ + L
Sbjct: 262 TMNEYSVPKTLQ-----ARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIAL--LLML 314
Query: 342 EPPTSRSEIFCANHYTNE--KKSKSKYWDWVSSSSDEEEKEE 381
+E A + K + S S ++ K
Sbjct: 315 IWYRPVAEF--AQS-IQSRIVEWKERLDKEFSLSVYQKMKFN 353
Score = 29.6 bits (66), Expect = 0.78
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 490 CMYISGVPGTGKTATVHAVMRKLK 513
G +GKT A++
Sbjct: 156 YWLFKGPIDSGKTTLAAALLELCG 179
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 50.9 bits (121), Expect = 8e-08
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 10/175 (5%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
SG G GKT+ + + L E G + + + ++E+ E
Sbjct: 39 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE 98
Query: 229 QAKAMLERHFTRPH--GPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTM 286
+ +L+ P V LIDE+ L + + LE +P + L
Sbjct: 99 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE---EPPEHVKFLLATTDP 155
Query: 287 DLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVARL 341
T+ L + ++ + + P A+QL+AR
Sbjct: 156 QKLPVTIL-----SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 205
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 49.8 bits (119), Expect = 2e-07
Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 38/196 (19%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+ G PG GKT AV E F+ + +R+ +L E
Sbjct: 47 LVGPPGVGKTHLARAVAG----EARVPFITASGSDFVEMFVGVGAARVRDLF-------E 95
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQ-------DVIYNILEYL------NKPKS 275
AK PC++ IDE+D + KR D L L + +
Sbjct: 96 TAKRH---------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 146
Query: 276 RLIILCIANTMD-LPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDA 334
++++ N D L L+ R ++ D ++I++ +
Sbjct: 147 AIVVMAATNRPDILDPALLR---PGRFD-RQIAIDAPDVKGREQILRIHARGKPLAEDVD 202
Query: 335 VQLVARLEPPTSRSEI 350
+ L+A+ P +++
Sbjct: 203 LALLAKRTPGFVGADL 218
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 45.8 bits (108), Expect = 7e-06
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 23/118 (19%)
Query: 144 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNA 203
+ F + +G + ++G +GKT VHA L + +G K Y
Sbjct: 106 LVGCSPVVAEFGGHRY---ASGMVIVTGKGNSGKTPLVHA----LGEALGGKDKYA---T 155
Query: 204 LSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQD 261
+ EP Y + V++ID L +
Sbjct: 156 VRFGEPLSGY---------NTDFNVFVDDI----ARAMLQHRVIVIDSLKNVIGAAGG 200
Score = 30.4 bits (68), Expect = 0.50
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 468 REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKF 520
+ F + +G + ++G +GKT VHA L + +G K
Sbjct: 106 LVGCSPVVAEFGGHRY---ASGMVIVTGKGNSGKTPLVHA----LGEALGGKD 151
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 42.8 bits (99), Expect = 5e-05
Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 30/221 (13%)
Query: 138 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFV 197
+ RE E + K+ + G+ TGK+ ++++ E+ ++
Sbjct: 11 RKDFFDREKE--------IEKLKGLRAPITLVLGLRRTGKS----SIIKIGINELNLPYI 58
Query: 198 YVEMNALS-----------------IPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTR 240
Y+++ I + + +L+ L N+ + +
Sbjct: 59 YLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRK 118
Query: 241 PHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSR 300
L++ + ++ + + L K + ++ +A D +R S
Sbjct: 119 DRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSE 178
Query: 301 MGLTRLMFK-PYDHHQLQEIVQNRLKNNNCFHPDAVQLVAR 340
MGL + L + ++ +A++ + R
Sbjct: 179 MGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 219
Score = 31.2 bits (69), Expect = 0.23
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 462 PESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQE 515
+ RE E + K+ + G+ TGK++ + + +L
Sbjct: 11 RKDFFDREKE--------IEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLP 56
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 41.7 bits (98), Expect = 1e-04
Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 38/213 (17%)
Query: 152 HRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKR 211
K+ + + G PGTGKT A+ E F + +
Sbjct: 33 EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG----EAKVPFFTISGSDFVEMFVGV 88
Query: 212 AYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLN 271
SR+ ++ EQAK PC++ IDE+D + +R + +
Sbjct: 89 GASRVRDMF-------EQAKKA---------APCIIFIDEIDAVGRQRGAGLGGGHDERE 132
Query: 272 -------------KPKSRLIILCIANTMD-LPERTLKGKVSSRMGLTRLMFKPYDHHQLQ 317
+ +I++ N D L L+ R +++ D +
Sbjct: 133 QTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLR---PGRFDR-QVVVGLPDVRGRE 188
Query: 318 EIVQNRLKNNNCFHPDAVQLVARLEPPTSRSEI 350
+I++ ++ ++AR P S +++
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADL 221
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 39.8 bits (92), Expect = 5e-04
Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%)
Query: 126 QLARESLHLSRVPESLPC--REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHA 183
Q+ L L VP+ + C RE + + L ++ + +++ G G+GK+
Sbjct: 5 QMLDRKLLLGNVPKQMTCYIREYHVDRVIK-KLDEMCDLDSFFLFLHGRAGSGKSVIASQ 63
Query: 184 VMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHG 243
+ K Q IG + + S PK + ++LL + + + H T
Sbjct: 64 ALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 123
Query: 244 PCVLLIDELDYLCNKRQDVIY------NILEYLNKPKSRLIILC----IANTMDLPERTL 293
++ + ++ + + + + R ++ I+N +
Sbjct: 124 KRMICN---ALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFI 180
Query: 294 K 294
+
Sbjct: 181 E 181
Score = 39.0 bits (90), Expect = 8e-04
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 450 QLARESLHLSRVPESLPC--REAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHA 507
Q+ L L VP+ + C RE + + L ++ + +++ G G+GK+
Sbjct: 5 QMLDRKLLLGNVPKQMTCYIREYHVDRVIK-KLDEMCDLDSFFLFLHGRAGSGKSVIASQ 63
Query: 508 VMRKLKQEIGDKF 520
+ K Q IG +
Sbjct: 64 ALSKSDQLIGINY 76
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 38.9 bits (89), Expect = 7e-04
Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 12/202 (5%)
Query: 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPE 208
L + + M G PGTGKT+T+ A+ ++L K +E+NA
Sbjct: 18 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE-- 75
Query: 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILE 268
R S + E + N + + ++++DE D + Q + +E
Sbjct: 76 --RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTME 133
Query: 269 YLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN 328
+ + R + S + + + N
Sbjct: 134 TYSGVT------RFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ--ENV 185
Query: 329 CFHPDAVQLVARLEPPTSRSEI 350
++ + + R I
Sbjct: 186 KCDDGVLERILDISAGDLRRGI 207
Score = 26.6 bits (57), Expect = 7.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 473 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512
L + + M G PGTGKT+T+ A+ ++L
Sbjct: 18 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 57
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 35.7 bits (81), Expect = 0.008
Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 48/207 (23%)
Query: 157 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216
+K + + + G PG GKT H + +L V + S
Sbjct: 28 AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---------VNLRVTS----------- 67
Query: 217 LELLLNVDAPPEQAKAMLERHFTRPHGP-CVLLIDELDYLCNKRQDVIYNILE------- 268
P + L +L IDE+ L + ++ +Y +E
Sbjct: 68 --------GPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV 119
Query: 269 --------YLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIV 320
+ R + I T T +S + L + + +
Sbjct: 120 IGQGPAARTIRLELPRFTL--IGATTRPGLITAP-LLSRFGIVEHLEYYTPEELAQGVMR 176
Query: 321 QNRLKNNNCFHPDAVQLVARLEPPTSR 347
RL +A + R T R
Sbjct: 177 DARLL-GVRITEEAALEIGRRSRGTMR 202
Score = 28.0 bits (61), Expect = 2.4
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI 516
+K + + + G PG GKT H + +L +
Sbjct: 28 AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 63
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.0 bits (79), Expect = 0.012
Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 166 CMYISGVPGTGKTATVHAVMRKLKQE-----------IGDKFVYVEMNALSIPEPKRAYS 214
++++G PG GKT +H LK + + + +++ + S
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 215 RILELLLNVDAPPEQAKAMLE--------------RHFTRPHGPCVLLIDELDYLCNKRQ 260
R+ + +++ + G V +IDE+ + Q
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 261 DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQL-QEI 319
I + + L+ P IIL L ++ +R + + + L +I
Sbjct: 123 LFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180
Query: 320 VQNRLKNN 327
V ++++
Sbjct: 181 V-TCVQSS 187
Score = 34.6 bits (78), Expect = 0.014
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 490 CMYISGVPGTGKTATVHAVMRKLKQE 515
++++G PG GKT +H LK
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 35.4 bits (80), Expect = 0.012
Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 29/190 (15%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+ G PGTGKT AV E G F + E++ + E
Sbjct: 43 LYGPPGTGKTLIARAVAN----ETGAFFFLINGP---------------EIMSKLAGESE 83
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQ----DVIYNILEYLNKPKSRLI----IL 280
+ + P ++ IDELD + KR+ +V I+ L L ++
Sbjct: 84 SNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 142
Query: 281 CIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQLVAR 340
+A T + R + P D EI+Q KN ++ VA
Sbjct: 143 VMAATNRPNSIDPALRRFGRFDREVDIGIP-DATGRLEILQIHTKNMKLADDVDLEQVAN 201
Query: 341 LEPPTSRSEI 350
+++
Sbjct: 202 ETHGHVGADL 211
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 33.3 bits (75), Expect = 0.065
Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 33/177 (18%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+ G G GKT + + NA I ++ + + VD+
Sbjct: 54 MIGPTGVGKTEIARRLAKL-------------ANAPFIKVEATKFTEVGYVGKEVDSIIR 100
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILE-------------------Y 269
++ IDE+D +C K + ++ +
Sbjct: 101 DLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 160
Query: 270 LNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKN 326
++ + L ++ R+ R+ + I+ +
Sbjct: 161 GMVKTDHILFIASGAFQVARPSDLIPELQGRL-PIRVELTALSAADFERILTEPHAS 216
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.9 bits (71), Expect = 0.12
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 6/133 (4%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
++G+PG GK+ + V L + G + + + + + +
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQ-GINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 229 QAKAMLER-----HFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIA 283
Q K ++ R G L ID + + + + +I L A
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 284 NTMDLPERTLKGK 296
+ + R +
Sbjct: 125 DPKIILSRQKRDT 137
Score = 28.4 bits (62), Expect = 1.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQE 515
++G+PG GK+ + V L +
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQ 28
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 31.8 bits (71), Expect = 0.12
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 168 YISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPP 227
+SG PG+GK+ + L G V+ + L L +
Sbjct: 8 LLSGHPGSGKS----TIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 63
Query: 228 EQAKAMLERHFTRPHGPCVL 247
Q A + + + +L
Sbjct: 64 MQIAADVAGRYAKEGYFVIL 83
Score = 28.0 bits (61), Expect = 2.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 492 YISGVPGTGKTATVHAVMRKL 512
+SG PG+GK+ A+
Sbjct: 8 LLSGHPGSGKSTIAEALANLP 28
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.5 bits (70), Expect = 0.17
Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 13/139 (9%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
++GVPG G T + M L++E + + +S ++ L+ + D +
Sbjct: 6 VTGVPGVGSTTSSQLAMDNLRKEGVNYKM------VSFGSVMFEVAKEENLVSDRDQMRK 59
Query: 229 QAKAMLERHFT-------RPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILC 281
+R + +D + + + LN+ LII+
Sbjct: 60 MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119
Query: 282 IANTMDLPERTLKGKVSSR 300
++ R + + R
Sbjct: 120 ETTGDEILMRRMSDETRVR 138
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQE 515
++GVPG G T + M L++E
Sbjct: 6 VTGVPGVGSTTSSQLAMDNLRKE 28
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/160 (11%), Positives = 35/160 (21%), Gaps = 15/160 (9%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
I G +GK+ V KL E R + + E L + +
Sbjct: 12 ILGGESSGKSVLV----NKLAAVFNTTS---------AWEYGREF--VFEKLGGDEQAMQ 56
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288
+ + + + + + I
Sbjct: 57 YSDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFD 116
Query: 289 PERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN 328
LK R + Q Q++++ L
Sbjct: 117 VTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK 156
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 31.4 bits (70), Expect = 0.22
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 127 LARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMY--ISGVPGTGKTATVHAV 184
LA + L+R R A+ ++ R L+ + T + I+GVPG GK+ T+ A+
Sbjct: 12 LAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDAL 71
Query: 185 MRKL 188
L
Sbjct: 72 GSLL 75
Score = 31.4 bits (70), Expect = 0.22
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 451 LARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMY--ISGVPGTGKTATVHAV 508
LA + L+R R A+ ++ R L+ + T + I+GVPG GK+ T+ A+
Sbjct: 12 LAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDAL 71
Query: 509 MRKL 512
L
Sbjct: 72 GSLL 75
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 31.4 bits (70), Expect = 0.24
Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 28/249 (11%)
Query: 114 RLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVP 173
R + + + A + L ++ + + L +I ISG P
Sbjct: 120 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI-------SVISGGP 172
Query: 174 GTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAM 233
GTGKT TV ++ L Q + + + A + R + + L + EQ K +
Sbjct: 173 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 232
Query: 234 LERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDLPERTL 293
E D L + L +L + + +
Sbjct: 233 PE--------------DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 278
Query: 294 KGKVSSRMGLTRLMFKPYDHHQLQEIVQNRL------KNNNCFHPDAVQLVARLEPPTSR 347
+ + R++F D QL + + N F + + ++RL
Sbjct: 279 SRLIDALPDHARVIFLG-DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 337
Query: 348 SEIFCANHY 356
+
Sbjct: 338 AGTGTEAAS 346
Score = 26.4 bits (57), Expect = 9.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 438 RLTAPLTPSTPLQLARESLHLSRVPESLPCREAEFQSIHRFLLSKISQSTTGCMYISGVP 497
R + + + A + L ++ + + L +I ISG P
Sbjct: 120 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI-------SVISGGP 172
Query: 498 GTGKTATVHAVMRKLKQ 514
GTGKT TV ++ L Q
Sbjct: 173 GTGKTTTVAKLLAALIQ 189
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 30.9 bits (68), Expect = 0.33
Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 14/191 (7%)
Query: 158 KISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRIL 217
K + G PG GKT H V ++L +I ++ + + +
Sbjct: 46 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNA---- 101
Query: 218 ELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRL 277
+D +G ++I + + L + S
Sbjct: 102 -----LDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 156
Query: 278 IILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHPDAVQL 337
+IL R R+ L +P + ++ ++ P+ +
Sbjct: 157 LILICNERNLPKMRP-----FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDR 211
Query: 338 VARLEPPTSRS 348
+ + R
Sbjct: 212 LIQTTRGDIRQ 222
Score = 27.8 bits (60), Expect = 2.8
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 482 KISQSTTGCMYISGVPGTGKTATVHAVMRKLKQ 514
K + G PG GKT H V ++L
Sbjct: 46 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 78
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 30.8 bits (68), Expect = 0.37
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 19/98 (19%)
Query: 158 KISQSTTGCMYISGVPGTGKTAT-VHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216
+ ++T G + I G+GKT H + + ++ I
Sbjct: 18 EAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAP------------------WNI 59
Query: 217 LELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDY 254
L + A E + + + +
Sbjct: 60 LAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCV 97
Score = 30.0 bits (66), Expect = 0.69
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 482 KISQSTTGCMYISGVPGTGKTAT-VHAVMRKLKQE 515
+ ++T G + I G+GKT H + + ++
Sbjct: 18 EAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEK 52
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.7 bits (68), Expect = 0.38
Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 4/143 (2%)
Query: 149 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI----GDKFVYVEMNAL 204
++ + K + + + G PG+GKT+ A+ + + + D F N
Sbjct: 17 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFD 76
Query: 205 SIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIY 264
+ + + + ++ + D Q Y
Sbjct: 77 ELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGY 136
Query: 265 NILEYLNKPKSRLIILCIANTMD 287
Y+ L +
Sbjct: 137 ETKMYVMAVPKINSYLGTIERYE 159
Score = 27.2 bits (59), Expect = 4.5
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 473 QSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHAVMRKL 512
++ + K + + + G PG+GKT+ A+ +
Sbjct: 17 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 56
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.0 bits (66), Expect = 0.46
Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 34/181 (18%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEI---GDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225
I+G G GK+ T + +L GD ++ + P L L
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE-----LLALTWKN 61
Query: 226 PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285
+ L + + + ++ I+ N
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDE---------AEALAQTVQAKVDDVEIRFIILWTNR 112
Query: 286 MDLPERTLKGKVSSRMGLTRL-------MFKPYDHH----------QLQEIVQNRLKNNN 328
+L R K +MG L + + L +IV+N N
Sbjct: 113 EELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPR 172
Query: 329 C 329
Sbjct: 173 F 173
Score = 27.3 bits (59), Expect = 3.9
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQEI 516
I+G G GK+ T + +L
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSA 30
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.1 bits (67), Expect = 0.47
Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 6/149 (4%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDK--FVYVEMNALSIPEPKRAYSRILELLLNVDAP 226
+ GV GTGK T + K++ G K V ++ + E + + + + + +
Sbjct: 17 LVGVQGTGKATTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPG 75
Query: 227 PEQAKAMLER--HFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNK-PKSRLIILCIA 283
+ + +R ++++D + + ++ + + K + L I
Sbjct: 76 EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVID 135
Query: 284 NTMDLPERTLKGKVSSRMGLTRLMFKPYD 312
++ L K + + ++ D
Sbjct: 136 ASIGQKAYDLASKFNQASKIGTIIITKMD 164
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.0 bits (64), Expect = 0.83
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202
+ G +GKT + + +E G + V+ +
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVKHH 38
Score = 28.7 bits (63), Expect = 1.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQE 515
+ G +GKT + + +E
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVRE 28
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.2 bits (64), Expect = 0.91
Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 6/154 (3%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
++G GK+ V + L + ++ +++L P + S + + D
Sbjct: 8 LNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVS 63
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288
G + + + E L +L + D
Sbjct: 64 IGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDG 123
Query: 289 P--ERTLKGKVSSRMGLTRLMFKPYDHHQLQEIV 320
E + G+ ++
Sbjct: 124 AVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVE 157
Score = 27.7 bits (60), Expect = 2.3
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQ 514
++G GK+ V + L +
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPE 29
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.9 bits (63), Expect = 0.98
Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 14/174 (8%)
Query: 166 CMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDA 225
++++G +GK A A+ L Q+ G + + + + N+
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 67
Query: 226 PPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANT 285
A + P + R V +L + L ++
Sbjct: 68 IAFVATELTRAGAAVIAAPI---APYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 124
Query: 286 MDLPERTLKGKVSSRMGLTRLMFKPY--------DHHQLQEIVQ---NRLKNNN 328
+ +G++ G+ P ++ IV L++
Sbjct: 125 RGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQG 178
Score = 27.0 bits (58), Expect = 3.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 490 CMYISGVPGTGKTATVHAVMRKLKQEIGDKF 520
++++G +GK A A+ L Q+ G
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQGGRSV 38
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 1.00
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Query: 144 REAEFQSIHRFLLSKISQSTTGCMY--ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201
R Q++ LL I + ++G PG GK+ + A L + + V +
Sbjct: 32 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI----REGLKVAV 87
Query: 202 NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLC 256
A+ P S + + D +A + + G EL LC
Sbjct: 88 IAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLC 142
Score = 28.7 bits (63), Expect = 1.7
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 468 REAEFQSIHRFLLSKISQSTTGCMY--ISGVPGTGKTATVHAVMRKL 512
R Q++ LL I + ++G PG GK+ + A L
Sbjct: 32 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.3 bits (64), Expect = 1.0
Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 6/148 (4%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+GV G+GKT +H L Q F E ++ + + A + + + PE
Sbjct: 39 FAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEE----AVSKGEVAQPKAVYIDTEGTFRPE 93
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKS-RLIILCIANTMD 287
+ M E Y + + I + + + + +L+++ +
Sbjct: 94 RIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 153
Query: 288 LPERTLKGKVSSRMGLTRLMFKPYDHHQ 315
E T +GK++ R +
Sbjct: 154 RNEYTGRGKLAERQQKLGRHMATLNKLA 181
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEM 201
G + + G G GKT + ++ + + G V+ +
Sbjct: 69 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 105
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 1.3
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 20/131 (15%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIG--------------------DKFVYVEMNALSIPE 208
I+G PG GKT V ++ +L + + S
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 209 PKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILE 268
+ + + + V++IDE+ + + + +
Sbjct: 65 TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124
Query: 269 YLNKPKSRLII 279
++ P ++
Sbjct: 125 IMHDPNVNVVA 135
Score = 26.5 bits (57), Expect = 5.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQEIG 517
I+G PG GKT V ++ +L +
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAI 29
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (63), Expect = 1.4
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 47/206 (22%)
Query: 157 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216
+K+ + ++G PG GKT H + +L+ I
Sbjct: 28 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---------------------- 65
Query: 217 LELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILE-------- 268
P + + T VL IDE+ L ++++Y+ +E
Sbjct: 66 ------TSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 119
Query: 269 -------YLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQ 321
+ ++ L L+ SR G+ + + I +
Sbjct: 120 GKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR----SRFGIILELDFYTVKELKEIIKR 175
Query: 322 NRLKNNNCFHPDAVQLVARLEPPTSR 347
+ A +++A+ T R
Sbjct: 176 AASLMDVEIEDAAAEMIAKRSRGTPR 201
Score = 26.5 bits (57), Expect = 8.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 481 SKISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEIG 517
+K+ + ++G PG GKT H + +L+ I
Sbjct: 28 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 64
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 28.5 bits (62), Expect = 2.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 161 QSTTGCMYISGVPGTGKTAT-VHAVMRKLKQE 191
+ TG + G+GKT + + ++
Sbjct: 11 EFVTGPCLVLAGAGSGKTRVITNKIAHLIRGC 42
Score = 28.5 bits (62), Expect = 2.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 485 QSTTGCMYISGVPGTGKTAT-VHAVMRKLKQE 515
+ TG + G+GKT + + ++
Sbjct: 11 EFVTGPCLVLAGAGSGKTRVITNKIAHLIRGC 42
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.2 bits (61), Expect = 2.1
Identities = 24/203 (11%), Positives = 49/203 (24%), Gaps = 17/203 (8%)
Query: 142 PCREAEFQSIHRFLLS-KISQSTTGCMYISGVPGTGKTATVHAVMRKLKQEI--GDKFVY 198
P +F+ + + + + + I +PG G A ++A+ R L + G K
Sbjct: 5 PWLRPDFEKLVASYQAGRGHHA----LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG 60
Query: 199 VEMNALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNK 258
+ L + A + + +
Sbjct: 61 HCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL 120
Query: 259 RQDVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQE 318
+L+ L +P + + L Y ++
Sbjct: 121 TDAAANALLKTLEEPPAETWFFLATREPE----------RLLATLRSRCRLHYLAPPPEQ 170
Query: 319 IVQNRLKNNNCFHPDAVQLVARL 341
L DA+ RL
Sbjct: 171 YAVTWLSREVTMSQDALLAALRL 193
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.1 bits (62), Expect = 2.2
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+ GV G GKT T+ + R+ +Q+ G + + ++ N+ +
Sbjct: 14 MVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRA--AAVEQLQVWGQRNNIPVIAQ 70
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIY 264
A ++ D + + DV+
Sbjct: 71 HTGAD----------SASVIFDAIQAAKARNIDVLI 96
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 28.1 bits (62), Expect = 2.3
Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 32/214 (14%)
Query: 143 CREAEFQSIHRFLLSKISQSTTGCMYISGVPGTGKTATVHA-VMRKLKQEIGDKFVYVEM 201
RE E + + L + + + G G GKTA R ++ ++ + +
Sbjct: 22 GREKELERAIQVLCRRRKNNPL----LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 77
Query: 202 NALSIPEPKRAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQ- 260
+L I A ++ ++ KA+L +L IDE+ +
Sbjct: 78 YSLDIGSLL-AGTKYRGDF------EKRFKALL--KQLEQDTNSILFIDEIHTIIGAGAA 128
Query: 261 -----DVIYNILEYLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQ 315
D I L+ K R+I + K + +R ++ +
Sbjct: 129 SGGQVDAANLIKPLLSSGKIRVI--GSTTYQEFSNIFEKDRALARR-FQKIDITEPSIEE 185
Query: 316 LQEIVQNRL----KNNNCFHPD-----AVQLVAR 340
+I+ +++ + AV+L +
Sbjct: 186 TVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 219
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.5 bits (60), Expect = 3.0
Identities = 19/173 (10%), Positives = 44/173 (25%), Gaps = 23/173 (13%)
Query: 168 YISGVPGTGKTATVHAVMRKLKQEIGDKFVYV--------EMNALSIPEPKRAYSRILEL 219
+ G G G+ + L + D+F Y + + + +
Sbjct: 7 VLLGAHGVGRR----HIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 62
Query: 220 LLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLII 279
++ + E + T+ + L + + + + P I
Sbjct: 63 DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 122
Query: 280 LCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDH-----------HQLQEIVQ 321
+ +L+ L R +D L+E V+
Sbjct: 123 APTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 175
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.3 bits (59), Expect = 3.2
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
+ GV G+GK+A V +L D + + + + A +
Sbjct: 11 LMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD-DRKPWLQALND 69
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNIL 267
A AM + L D L ++ + L
Sbjct: 70 AAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYL 108
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 27.7 bits (61), Expect = 3.3
Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 20/178 (11%)
Query: 165 GCMYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVD 224
G G G GKT + L + + + ++M K A SR+ +
Sbjct: 54 GSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMTEYM---EKHAVSRL------IG 103
Query: 225 APPEQAKAMLERHFT---RPHGPCVLLIDELDYLCNKRQDVIYNILEY--LNKPKSRLI- 278
APP T R V+L DE++ +++ IL+ L R +
Sbjct: 104 APPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVD 163
Query: 279 ----ILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNNCFHP 332
++ + + + P + R + NRL F P
Sbjct: 164 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP 221
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 3.3
Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 16/201 (7%)
Query: 155 LLSKISQSTTGCMYIS--GVPGTGKTATVHAVMRKLKQEIGDK--FVYVEMNALSIPEPK 210
LL + Q + I G G GK++TV++++ + I +
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF 80
Query: 211 RAYSRILELLLNVDAPPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQD--VIYNILE 268
L+ + A +++ +L +D LD D V I +
Sbjct: 81 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITD 140
Query: 269 YLNKPKSRLIILCIANTMDLPERTLKGKVSSRMGLTRLMFKPYDHHQLQEIVQNRLKNNN 328
K I+ + + P GL F L ++V++
Sbjct: 141 SFGKGIWNKAIVALTHAQFSPPD----------GLPYDEFFSKRSEALLQVVRSGASLKK 190
Query: 329 CFHPDAVQLVARLEPPTSRSE 349
+ +V
Sbjct: 191 DAQASDIPVVLIENSGRCNKN 211
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.6 bits (60), Expect = 3.5
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGD----KFVYVEMNALSIPEPKRAYSRILELLLNVD 224
+SG +GK++ +++ L Q D + V + ++ ++ L+ N D
Sbjct: 7 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFD 66
Query: 225 APPEQAKAMLERHFTRPHGPCVLLIDELDYLCNKRQD 261
P ++ + + I D++ + R++
Sbjct: 67 HPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKE 103
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 3.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDK 195
SG G+GK+ T + L ++ G +
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGE 58
Score = 27.5 bits (60), Expect = 3.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQEIGDK 519
SG G+GK+ T + L ++ G +
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGE 58
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 4.3
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 169 ISGVPGTGKT--ATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAP 226
+ G G+GKT A AVM +L E G V E RI E+ N
Sbjct: 41 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT---ENTFRPERIREIAQNRGLD 97
Query: 227 PEQAKAMLERHFTRPHGPCVLLIDELDYLC 256
P++ + +LL+ + +
Sbjct: 98 PDEVLKHIYVARAFNSNHQMLLVQQAEDKI 127
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.2 bits (60), Expect = 4.7
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 162 STTGCMYISGVPGTGKTATVHAVMRK-LKQEIGDKFVYVEMNALSIPEPKRAYSRILELL 220
S G + +G P +AT A+ R L Q+ F + L++ + + + +L +
Sbjct: 50 SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV 109
Query: 221 LN-------VDAPPEQ-----------AKAMLERHFTRPHGPCVLLIDE-LDYLCNKRQD 261
+ Q A +L+ +LL+DE ++ L +Q
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 262 VIYNILEYLNKPKSRLII 279
+ IL L + +++
Sbjct: 170 ALDKILSALCQQGLAIVM 187
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.9 bits (58), Expect = 4.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQE 191
+ GTGKT + ++ L
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCAR 29
Score = 26.9 bits (58), Expect = 4.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQE 515
+ GTGKT + ++ L
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCAR 29
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.9 bits (58), Expect = 5.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQE 191
+ G+P GKT + R L
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFI 29
Score = 26.9 bits (58), Expect = 5.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 493 ISGVPGTGKTATVHAVMRKLKQE 515
+ G+P GKT + R L
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFI 29
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 26.6 bits (58), Expect = 6.2
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 217 LELLLNVDAPPEQAKAMLERHFTRPH--GPCVLLIDELDYLCNKR 259
LE+ L K LE++ T ++ I + +
Sbjct: 7 LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRS 51
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 6.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 168 YISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMN 202
++G PG GKT + ++L + G K++ V
Sbjct: 8 LLTGTPGVGKT----TLGKELASKSGLKYINVGDL 38
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 26.8 bits (58), Expect = 7.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 162 STTGCMYISGVPGTGKTAT-VHAVMRKLKQE 191
+T G + I G+GKT H + + ++
Sbjct: 22 TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEK 52
Score = 26.8 bits (58), Expect = 7.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 486 STTGCMYISGVPGTGKTAT-VHAVMRKLKQE 515
+T G + I G+GKT H + + ++
Sbjct: 22 TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEK 52
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.3 bits (56), Expect = 8.1
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 167 MYISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRI 216
+ + G GTGK A++ + + ++ K + +
Sbjct: 36 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 85
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.1 bits (56), Expect = 8.6
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 169 ISGVPGTGKTATVHAVMRKLKQEIGDKFVYVEMNALSIPEPKRAYSRILELLLNVDAPPE 228
I+G PGTGKT ++ + E+ +L+ E
Sbjct: 10 ITGTPGTGKT----SMAEMIAAELDGFQHLEVG----------------KLVKENHFYTE 49
Query: 229 QAKAMLERHFTRPHGPCVLLIDELDYLCNKRQDVIYNILEYLNKPKSRLIILCIANTMDL 288
+ +L E + V Y+ E + ++++ +T L
Sbjct: 50 YDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVL 109
Query: 289 PERTLKGKVSSR 300
ER K + S
Sbjct: 110 FERLTKRQYSEA 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.369
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,807,807
Number of extensions: 81952
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 90
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.7 bits)