BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17065
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From
Saccharomyces Cerevisiae
pdb|3ER0|B Chain B, Crystal Structure Of The Full Length Eif5a From
Saccharomyces Cerevisiae
Length = 167
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 117/137 (85%), Gaps = 1/137 (0%)
Query: 5 EDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLD 64
E+ FET D+G+S TYPMQCSALRKNGFV++K+RPCKIVDMSTSKTGKHGHAKVH+V +D
Sbjct: 14 EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAID 73
Query: 65 IFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGA 124
IF+GKK ED+ PSTHNM+VP VKR +YQL DI DDG+LSLM +G+ ++D+K PEGELG
Sbjct: 74 IFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGELGD 132
Query: 125 QLRSDYDAGKELLVSFI 141
L++ +D GK+L+V+ I
Sbjct: 133 SLQTAFDEGKDLMVTII 149
>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation
Initiation Factor Eif5a
pdb|3CPF|B Chain B, Crystal Structure Of Human Eukaryotic Translation
Initiation Factor Eif5a
Length = 138
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Query: 16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC 75
S T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+GKKYEDIC
Sbjct: 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60
Query: 76 PSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE 135
PSTHNMDVP +KR D+QL I DGYLSL+ D+GE+REDL+LPEG+LG ++ YD G+E
Sbjct: 61 PSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE 119
Query: 136 LLVSFI 141
+L++ +
Sbjct: 120 ILITVL 125
>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation
Factor Eif-5a2 From Arabidopsis Thaliana
pdb|3HKS|B Chain B, Crystal Structure Of Eukaryotic Translation Initiation
Factor Eif-5a2 From Arabidopsis Thaliana
Length = 167
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Query: 9 FETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSG 68
FE +SGAS TYP +RK G +++K RPCK+V++STSKTGKHGHAK H V +DIF+
Sbjct: 16 FEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTA 75
Query: 69 KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGE-LGAQLR 127
KK EDI PS+HN DVP V R DYQL DI++DG++SL+ D+G ++DLKLP + L AQ+R
Sbjct: 76 KKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMR 135
Query: 128 SDYDAGKELLVSFI 141
+D GK+++VS +
Sbjct: 136 LGFDEGKDIVVSVM 149
>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic
Initiation Factor 5a
Length = 174
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 93/143 (65%), Gaps = 7/143 (4%)
Query: 6 DAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDI 65
D + G AS TYP+ AL+K G+V + RPCK++D+S SKTGKHGHAKV +V DI
Sbjct: 15 DFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDI 74
Query: 66 FSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELREDLKL-P 118
F+G + ED PSTHN++VPFVK Y + DI + +LSLM D GE REDL + P
Sbjct: 75 FTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPP 134
Query: 119 EGELGAQLRSDYDAGKELLVSFI 141
+ L Q++ +D+GK++LV +
Sbjct: 135 DPALATQIKEQFDSGKDVLVVVV 157
>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic
Initiation Factor 5a
Length = 174
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
Query: 7 AHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIF 66
AH GD+ AS TYP AL+K G+V + RPCK++D+S SKTGKHGHAKV +V DIF
Sbjct: 17 AHQGGGDN-ASKTYPXAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIF 75
Query: 67 SGKKYEDICPSTHNMDVPFVKREDYQLTDISDD------GYLSLMGDNGELREDLKL-PE 119
+G + ED PSTHN++VPFVK Y + DI + +LSL D GE REDL P+
Sbjct: 76 TGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPSHLSLXDDEGESREDLDXPPD 135
Query: 120 GELGAQLRSDYDAGKELLVSFI 141
L Q++ +D+GKE+LV +
Sbjct: 136 AALATQIKEQFDSGKEVLVVVV 157
>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From
Methanococcus Jannaschii
Length = 135
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
T + +L+ +VM+ PC+IVD+S SK GKHG AK +VG+ IF K E + P++
Sbjct: 7 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 66
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELRE-------DLKLPEG 120
++VP + R Q+ L++MGD ++ + +L +PEG
Sbjct: 67 SKVEVPIIDRRKGQV--------LAIMGDMVQIMDLQTYETLELPIPEG 107
>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From
Methanococcus Jannaschii
Length = 136
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
T + +L+ +VM+ PC+IVD+S SK GKHG AK +VG+ IF K E + P++
Sbjct: 8 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELRE-------DLKLPEG 120
++VP + R Q+ L++MGD ++ + +L +PEG
Sbjct: 68 SKVEVPIIDRRKGQV--------LAIMGDMVQIMDLQTYETLELPIPEG 108
>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum
Aerophilum
Length = 136
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 17 STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
ST Y ++ L++ +V++ PC++V++ SKTGKHG AK +V + +F G K P
Sbjct: 5 STKY-VEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLP 63
Query: 77 STHNMDVPFVKREDYQLTDISDD 99
++VP +++ Q+ +S D
Sbjct: 64 VDAQVEVPIIEKFTAQILSVSGD 86
>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a
From Pyrococcus Horikoshii
pdb|1IZ6|B Chain B, Crystal Structure Of Translation Initiation Factor 5a
From Pyrococcus Horikoshii
pdb|1IZ6|C Chain C, Crystal Structure Of Translation Initiation Factor 5a
From Pyrococcus Horikoshii
Length = 138
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 22 MQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNM 81
+Q S L+ ++++ PC+IV+++ S GKHG AK + + IF GK + P++ +
Sbjct: 7 VQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEV 66
Query: 82 DVPFVKREDYQLTDISDD 99
DVP + ++ Q+ I+ D
Sbjct: 67 DVPIIDKKTAQVIAITPD 84
>pdb|1KHI|A Chain A, Crystal Structure Of Hex1
Length = 176
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 11 TGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGK 69
TG AS T + C +R ++L+ RPC+++ +STS TG+H + +G+D+F+ +
Sbjct: 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQ 78
Query: 70 KYE------DICPS--THNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLK-LPEG 120
+E + PS M P K+ Y++ D+ DG + M + G+++++L + +
Sbjct: 79 LHEESSFVSNPAPSVVVQTMLGPVFKQ--YRVLDM-QDGSIVAMTETGDVKQNLPVIDQS 135
Query: 121 ELGAQLRSDYDAGK 134
L +L+ +++G+
Sbjct: 136 SLWNRLQKAFESGR 149
>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
Length = 320
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 32 FVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC-PSTHNMDVPFVKRED 90
F LK P +V +S + G V L I D+ PS + V +V ++
Sbjct: 178 FRTLKEGPMSLVLLSKVEKKPQGDLDVEFKNLKII------DVTNPSQLDKGVAYVGNKN 231
Query: 91 YQLTDISDDGYLSLMGD 107
QLT SDDG + GD
Sbjct: 232 VQLTLKSDDGRTNFEGD 248
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 12 GDSGASTTYPMQCSALRKNGFVMLKA-------RPCKIVDMSTSKTGKHGHAKVHMVGLD 64
G G+ T +P+ + KNG L+ +PC+ ++ ++G+A + ++ LD
Sbjct: 322 GIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLKENGYADLTIIDLD 381
Query: 65 IFSGKKYEDICPSTHNMDVPFVKREDY 91
K ED N PF+ + Y
Sbjct: 382 SEQEIKGEDFLSKADN--TPFIGYKVY 406
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGEL 111
N D+ F+K YQLT +S+D ++++ G+L
Sbjct: 17 ENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKL 49
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGEL 111
N D+ F+K YQLT +S+D ++++ G+L
Sbjct: 34 ENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKL 66
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGEL 111
N D+ F+K YQLT +S+D ++++ G+L
Sbjct: 16 ENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKL 48
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGEL 111
N D+ F+K YQLT +S+D ++++ G+L
Sbjct: 15 ENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKL 47
>pdb|3C1Y|A Chain A, Structure Of Bacterial Dna Damage Sensor Protein With Co-
Purified And Co-Crystallized Ligand
pdb|3C1Y|B Chain B, Structure Of Bacterial Dna Damage Sensor Protein With Co-
Purified And Co-Crystallized Ligand
pdb|3C1Z|A Chain A, Structure Of The Ligand-Free Form Of A Bacterial Dna
Damage Sensor Protein
pdb|3C1Z|B Chain B, Structure Of The Ligand-Free Form Of A Bacterial Dna
Damage Sensor Protein
pdb|3C21|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
Reaction Product
pdb|3C21|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
Reaction Product
pdb|3C23|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
Non- Reactive Ligand
pdb|3C23|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
Non- Reactive Ligand
Length = 377
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 69 KKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGD-------NGELREDLKLPEGE 121
KKYED+ +D F + Y+L+ + DG + L D N L D +P GE
Sbjct: 67 KKYEDVIQGGFWLDTDFSAEKLYELSKM--DGAIVLSEDITKIYYANVHLVPDPTIPTGE 124
Query: 122 LGAQLRSDYDAGKE 135
G + R+ K+
Sbjct: 125 TGTRHRTAERLAKQ 138
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 84 PFVK---REDYQLTDISDDGYLSLMGDNGELREDLKL 117
PF+K D+QLT I+ +L GDNG L +++ L
Sbjct: 230 PFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGL 266
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 99 DGYLSLMGDNG----ELREDLKLPEGE 121
+GY + NG E RED+ LPEGE
Sbjct: 143 EGYFGWVAQNGFELPENREDIWLPEGE 169
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 99 DGYLSLMGDNG----ELREDLKLPEGE 121
+GY + NG E RED+ LPEGE
Sbjct: 142 EGYFGWVAQNGFELPENREDIWLPEGE 168
>pdb|3P24|A Chain A, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|B Chain B, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|C Chain C, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|D Chain D, Structure Of Profragilysin-3 From Bacteroides Fragilis
Length = 397
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 75 CPSTHNMDVPFVKREDY--QLTDISDDGYLSLMGDNGELRE 113
P T ++D+ V D QL D+SD G + ++ DNG R+
Sbjct: 32 APVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQ 72
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 53 HGHAKVHMVGLDIFSGKKYEDICPST 78
H AK+ + ++GKK E+I PST
Sbjct: 36 HPEAKITYLSSRTYAGKKLEEIFPST 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,801,963
Number of Sequences: 62578
Number of extensions: 200014
Number of successful extensions: 399
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 25
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)