Query psy17065
Match_columns 150
No_of_seqs 112 out of 1053
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 6.5E-53 2.2E-57 327.5 17.0 148 1-150 9-158 (167)
2 3er0_A Eukaryotic translation 100.0 5.8E-53 2E-57 327.9 12.6 148 1-150 11-158 (167)
3 1x6o_A Eukaryotic initiation f 100.0 1.4E-50 4.9E-55 316.2 16.6 149 1-150 9-166 (174)
4 3cpf_A Eukaryotic translation 100.0 2.5E-49 8.7E-54 298.9 15.6 133 16-150 1-134 (138)
5 1iz6_A Initiation factor 5A; S 100.0 2.6E-45 8.8E-50 277.1 15.6 130 16-150 1-131 (138)
6 1bkb_A Translation initiation 100.0 1.9E-43 6.4E-48 266.1 17.1 125 19-150 6-132 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 2.2E-41 7.5E-46 255.0 15.3 125 16-150 5-130 (136)
8 3a5z_B EF-P, elongation factor 100.0 7.7E-40 2.6E-44 258.8 14.6 116 20-141 5-121 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 2.3E-39 8E-44 254.7 15.5 114 21-141 1-115 (184)
10 3tre_A EF-P, elongation factor 100.0 7.3E-39 2.5E-43 253.2 16.9 116 21-142 6-122 (191)
11 1yby_A Translation elongation 100.0 6.9E-39 2.4E-43 257.3 15.4 118 18-141 28-146 (215)
12 3oyy_A EF-P, elongation factor 100.0 6.5E-38 2.2E-42 247.8 15.0 116 21-142 4-121 (191)
13 1khi_A HEX1; membrane sealing, 100.0 1.7E-33 5.9E-38 219.2 14.5 133 10-150 23-166 (176)
14 3r8s_P 50S ribosomal protein L 62.0 17 0.00059 25.9 5.4 66 22-89 14-88 (114)
15 3v2d_T 50S ribosomal protein L 60.3 20 0.00069 26.6 5.7 66 22-89 17-91 (146)
16 3qx1_A FAS-associated factor 1 59.8 9.9 0.00034 24.7 3.6 32 52-84 2-33 (84)
17 2ftc_K 39S ribosomal protein L 52.2 53 0.0018 22.6 6.5 21 57-77 39-59 (98)
18 1at0_A 17-hedgehog; developmen 43.9 36 0.0012 24.3 4.8 31 18-48 83-119 (145)
19 2zjr_M 50S ribosomal protein L 43.2 31 0.001 26.1 4.4 66 22-89 22-96 (166)
20 1ed7_A Chitinase A1, (CHBD-CHI 43.1 8 0.00027 22.7 0.9 24 27-50 8-31 (45)
21 2f9h_A PTS system, IIA compone 42.8 22 0.00076 25.7 3.4 21 25-45 53-73 (129)
22 1k0h_A Gpfii; twisted beta-san 41.5 5.7 0.0002 28.2 0.1 34 23-59 71-104 (117)
23 1mvg_A Liver basic fatty acid 39.1 48 0.0017 23.2 4.8 45 60-104 47-91 (125)
24 3p02_A Uncharacterized protein 35.7 75 0.0026 26.2 6.0 59 8-69 97-160 (317)
25 2fhd_A RAD9 homolog, DNA repai 34.5 47 0.0016 24.8 4.1 42 21-62 58-110 (153)
26 1ifc_A Intestinal fatty acid b 33.5 52 0.0018 23.2 4.2 45 60-104 48-92 (132)
27 1p6p_A Fatty acid-binding prot 33.1 46 0.0016 23.3 3.8 45 60-104 47-91 (125)
28 3isy_A Bsupi, intracellular pr 32.3 1.2E+02 0.0042 21.3 6.0 42 43-87 9-50 (120)
29 1o8v_A Fatty acid binding prot 32.2 60 0.002 23.0 4.3 45 60-104 51-95 (134)
30 1ggl_A Protein (cellular retin 32.0 72 0.0025 22.6 4.8 45 60-104 49-95 (134)
31 1b56_A Fatty acid binding prot 31.2 60 0.002 23.0 4.2 44 60-103 52-95 (135)
32 2a4h_A Selenoprotein SEP15; re 31.2 24 0.00083 25.5 2.0 41 90-131 54-97 (126)
33 1mdc_A Insect fatty acid bindi 31.1 64 0.0022 22.8 4.3 45 60-104 49-93 (132)
34 2z14_A EF-hand domain-containi 31.0 42 0.0014 24.1 3.3 28 20-47 82-109 (133)
35 2kca_A Bacteriophage SPP1 comp 30.6 1.1E+02 0.0039 19.9 8.7 37 25-64 66-103 (109)
36 2qo4_A Liver-basic fatty acid 29.9 50 0.0017 23.2 3.5 45 60-104 48-92 (126)
37 3ppt_A Sodium-calcium exchange 29.7 70 0.0024 22.7 4.3 43 60-102 49-91 (133)
38 1ftp_A Muscle fatty acid bindi 28.9 80 0.0027 22.3 4.5 45 60-104 51-96 (133)
39 4a1y_A Myelin P2 protein; tran 28.6 66 0.0023 22.8 4.0 45 60-104 51-95 (133)
40 2k50_A Replication factor A re 28.0 1.3E+02 0.0046 19.9 6.4 53 21-77 7-63 (115)
41 2lcj_A PAB POLC intein; hydrol 27.2 1.6E+02 0.0054 21.5 6.1 17 20-36 104-120 (185)
42 2rcq_A CRBP-II, retinol-bindin 27.1 76 0.0026 22.7 4.2 45 60-104 53-99 (141)
43 2f73_A L-FABP, fatty acid-bind 27.0 69 0.0023 23.3 3.9 45 60-104 70-115 (149)
44 2crq_A Mitochondrial translati 26.4 30 0.001 24.4 1.7 23 125-149 35-57 (112)
45 3od3_A Blue copper oxidase CUE 25.9 69 0.0024 27.6 4.4 51 29-87 182-232 (488)
46 1fdq_A Fatty acid-binding prot 25.8 53 0.0018 23.1 3.1 45 60-104 49-93 (131)
47 1vyf_A SM14, 14 kDa fatty acid 25.6 75 0.0026 22.5 3.9 45 60-104 51-96 (135)
48 2a0a_A DER F 13; beta barrel, 25.6 75 0.0026 22.4 3.8 45 60-104 49-94 (131)
49 4a60_A Fatty acid-binding prot 25.5 81 0.0028 23.1 4.1 45 60-104 72-116 (154)
50 1crb_A Cellular retinol bindin 25.0 74 0.0025 22.5 3.7 45 60-104 49-95 (134)
51 2lba_A BABP protein; ileal bIl 24.4 86 0.0029 22.3 4.0 45 60-104 52-97 (136)
52 3q6l_A Fatty acid-binding prot 23.7 87 0.003 22.8 4.0 44 60-103 70-113 (152)
53 3p6d_A Fatty acid-binding prot 23.6 90 0.0031 22.3 4.0 44 60-103 57-100 (139)
54 2bkf_A Zinc-finger protein NBR 23.5 1.1E+02 0.0038 20.6 4.2 29 114-142 57-86 (87)
55 1o6a_A Putative flagellar moto 23.4 94 0.0032 20.7 3.8 19 24-42 37-58 (96)
56 1lpj_A Retinol-binding protein 22.9 92 0.0032 21.9 3.9 45 60-104 49-95 (133)
57 1o9y_A HRCQ2; secretory protei 22.7 1.3E+02 0.0045 19.4 4.4 20 24-43 33-55 (84)
58 3rsw_A Fatty acid-binding prot 22.6 90 0.0031 23.0 3.9 44 60-103 75-118 (158)
59 3gs9_A Protein GP18; NP_465809 22.5 1.2E+02 0.0041 24.6 5.0 40 26-67 55-94 (342)
60 1p9k_A ORF, hypothetical prote 22.3 72 0.0025 20.1 3.0 20 24-43 59-78 (79)
61 1eal_A Gastrotropin, ileal lip 22.2 93 0.0032 21.7 3.8 45 60-104 47-92 (127)
62 3o27_A Putative uncharacterize 21.6 93 0.0032 20.1 3.3 30 109-142 22-51 (68)
63 2g7b_A Cellular retinoic acid- 21.5 84 0.0029 22.2 3.4 45 60-104 50-95 (137)
64 3vg7_A Fatty acid-binding prot 21.4 1.1E+02 0.0037 21.6 4.0 43 60-102 51-94 (132)
65 3uc2_A Hypothetical protein wi 21.3 1.2E+02 0.004 22.2 4.2 33 43-76 59-91 (139)
66 1wj6_A KIAA0049 protein, RSGI 21.2 69 0.0024 22.3 2.8 32 114-145 65-97 (101)
67 1y43_B Aspergillopepsin II hea 20.6 2E+02 0.0068 21.5 5.5 45 20-77 50-94 (173)
68 1zso_A Hypothetical protein; s 20.4 2.6E+02 0.0091 20.6 6.5 42 78-120 99-141 (164)
69 1rie_A Rieske iron-sulfur prot 20.3 1.3E+02 0.0043 20.8 4.1 27 19-45 6-34 (129)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-53 Score=327.53 Aligned_cols=148 Identities=53% Similarity=0.868 Sum_probs=128.1
Q ss_pred CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065 1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN 80 (150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ 80 (150)
|||+| |+|++++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++
T Consensus 9 ~~~~~-~~~~~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDE-HHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccc-ccccccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 66654 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceEEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChh-hHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 81 MDVPFVKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEG-ELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 81 ve~~~v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~-~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
+++|+|++++|||||+|++++|+||| +||||+ ++.||++ .|+++++.||++|++|.|+++++||+|.+|
T Consensus 88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~-~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~~mg~e~i~ 158 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKD-DLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQIC 158 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSBEEEECTTSCEEC-CCBCCSCHHHHHHHHHHHHTTEEEEEEEEEETTEEEEE
T ss_pred EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEE-EEecCchHHHHHHHHHHhhCCCEEEEEEEeeCCeEEEE
Confidence 99999999999999998677899999 998876 7899998 999998899999999999999999999874
No 2
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-53 Score=327.85 Aligned_cols=148 Identities=64% Similarity=1.075 Sum_probs=132.7
Q ss_pred CCCccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCe
Q psy17065 1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHN 80 (150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ 80 (150)
||| |.|+|++++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++
T Consensus 11 ~~~-~~~~~~~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSD-EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccc-ccccccccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 554 7789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
+++|+|++++|||||+| |++|+|||++.++|||+.||++.||++++.||++|++|.|+++++||+|.+|
T Consensus 90 ve~~~ver~~~QyLY~d-g~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~~mg~e~i~ 158 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDID-DGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAI 158 (167)
T ss_dssp EEECCCCEEEEECCCCT-TTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEE
T ss_pred cccceEEEeeEEEEEEc-CCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEhhCCcEEEE
Confidence 99999999999999998 7789999977778999999999999998899999999999999999999874
No 3
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1.4e-50 Score=316.17 Aligned_cols=149 Identities=44% Similarity=0.769 Sum_probs=120.8
Q ss_pred CCC-ccccccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCC
Q psy17065 1 MGD-IEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTH 79 (150)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~ 79 (150)
||| +++++|++++|++|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||++
T Consensus 9 ~~~~~~~~~~~~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~ 88 (174)
T 1x6o_A 9 MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH 88 (174)
T ss_dssp ------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred ccccccccceecCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCC
Confidence 444 3455899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecceEEEEeeEEEEeeCC------CcEEEec-CCCceeeeeecChh-hHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 80 NMDVPFVKREDYQLTDISDD------GYLSLMG-DNGELREDLKLPEG-ELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 80 ~ve~~~v~~~~~qyly~d~~------~~~~fMd-et~e~~Eqi~l~~~-~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
++++|+|++++|||||+|++ ++|+||| ++|+|+ ++.+|++ .||++|++||++|++|.|+++++||+|.+|
T Consensus 89 kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~-~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~~mG~e~i~ 166 (174)
T 1x6o_A 89 NVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE-DLDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTEQVL 166 (174)
T ss_dssp EEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEEC-CCBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred EEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEE-EeeCCchhhHHHHHHHHhhCCCEEEEEEEeeCCeEEEE
Confidence 99999999999999999955 4999999 888765 5555888 899988899999999999999999999874
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=298.93 Aligned_cols=133 Identities=64% Similarity=1.109 Sum_probs=121.4
Q ss_pred cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065 16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD 95 (150)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly 95 (150)
+|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
+| |++|+||| +||||+ ++.||++.||+++++||+||++|.|+++++||+|.+|
T Consensus 81 ~d-g~~~~fMD~etyeq~-~l~l~~~~lgd~~~~~l~eg~~v~V~~~~~~g~e~~~ 134 (138)
T 3cpf_A 81 IQ-DGYLSLLQDSGEVRE-DLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAV 134 (138)
T ss_dssp EE-TTEEEEECTTSCEEC-CSBCCSHHHHHHHHHHHHHTCCCEEEEEEETTEEEEE
T ss_pred ec-CCEEEEEcCCCCeEe-eecCCHHHHHHHHHHHhhCCCEEEEEEEhhCCcEEEE
Confidence 99 88899999 887755 5558999999996699999999999999999999864
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=2.6e-45 Score=277.08 Aligned_cols=130 Identities=24% Similarity=0.436 Sum_probs=119.6
Q ss_pred cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065 16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD 95 (150)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly 95 (150)
+|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||
T Consensus 1 ~~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY 80 (138)
T 1iz6_A 1 MGDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIA 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
.| |++|+||| +||||+ ++.+|++.||+. ..||++|+. |.++++||+|.+|
T Consensus 81 ~d-g~~~~fMD~etyeq~-~l~~~~~~lgd~-~~~l~e~~~--V~v~~~~G~~~i~ 131 (138)
T 1iz6_A 81 IT-PDTVQIMDMETYETF-EVPIDTGVADEI-RDQLKEGIN--VEYWETLGRIKIM 131 (138)
T ss_dssp EC-SSEEEEECTTTCCEE-EEEHHHHBCGGG-TTTCCTTCE--EEEEEETTEEEEE
T ss_pred eC-CCEEEEEeCCCCceE-EeeCCHHHHHHH-HHhCCCCCE--EEEEEECCcEEEE
Confidence 99 77899999 998866 555599999985 899999876 5667899998764
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.9e-43 Score=266.05 Aligned_cols=125 Identities=25% Similarity=0.452 Sum_probs=116.1
Q ss_pred eeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeC
Q psy17065 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISD 98 (150)
Q Consensus 19 t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~ 98 (150)
|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||.|
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~d- 84 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVS- 84 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEEC-
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEec-
Confidence 9999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCcEEEec-CCCceeeeeecChhh-HHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 99 DGYLSLMG-DNGELREDLKLPEGE-LGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 99 ~~~~~fMd-et~e~~Eqi~l~~~~-lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
|++|+||| +||| |+.||.+. +|+. .+||+||+.| .++.++|++.+|
T Consensus 85 g~~~~fMD~etye---q~~l~~~~~~gd~-~~~l~e~~~v--~v~~~~g~~~~~ 132 (136)
T 1bkb_A 85 GDVIQLMDMRDYK---TIEVPMKYVEEEA-KGRLAPGAEV--EVWQILDRYKII 132 (136)
T ss_dssp SSEEEEEETTTCC---EEEEEGGGBCHHH-HTTCCTTCEE--EEEEETTEEEEE
T ss_pred CCEEEEEeCCCCe---EEEeccccchhHH-HhhCCCCCEE--EEEEECCEEEEE
Confidence 77899999 8876 66999888 9986 8899998865 456678988764
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=2.2e-41 Score=254.96 Aligned_cols=125 Identities=30% Similarity=0.479 Sum_probs=113.1
Q ss_pred cceeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEE
Q psy17065 16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTD 95 (150)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly 95 (150)
+|.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++++.|+++++++||||
T Consensus 5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly 84 (136)
T 2eif_A 5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA 84 (136)
T ss_dssp CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEecccceeeeC
Q psy17065 96 ISDDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIFLLLFRYCI 150 (150)
Q Consensus 96 ~d~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~~~g~~~~~ 150 (150)
.| +++|+||| |||||+ .||.+ ++. .+ |++|+. |.++.+||+|.++
T Consensus 85 ~d-g~~~~fMD~etyeq~---~l~~~--gd~-~~-l~e~~~--v~v~~~~G~~~i~ 130 (136)
T 2eif_A 85 IM-GDMVQIMDLQTYETL---ELPIP--EGI-EG-LEPGGE--VEYIEAVGQYKIT 130 (136)
T ss_dssp EE-TTEEEEEETTTCCEE---EEECC--SCC-TT-CSTTCE--EEEEEETTEEEEE
T ss_pred ec-CCEEEEEeCCCceEE---EecCC--Cch-hh-CCCCCE--EEEEEECCEEEEE
Confidence 99 77899999 887754 66655 665 67 999876 5567789998764
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.7e-40 Score=258.83 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=109.7
Q ss_pred eeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC
Q psy17065 20 YPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD 99 (150)
Q Consensus 20 ~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~ 99 (150)
+++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|++++|||||.| |
T Consensus 5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d-g 82 (191)
T 3a5z_B 5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND-G 82 (191)
T ss_dssp -CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEEC-S
T ss_pred ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeC-C
Confidence 678999999999999999999999999999999 99999999999999999999999999999999999999999999 5
Q ss_pred CcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065 100 GYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI 141 (150)
Q Consensus 100 ~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~ 141 (150)
+.|+||| |||| |+.||++.||++ .+||+||++|.|++.
T Consensus 83 d~~~FMD~etye---Q~~l~~~~lgd~-~~~l~e~~~v~v~~~ 121 (191)
T 3a5z_B 83 EFWHFMNNETFE---QLSADAKAIGDN-AKWLLDQAECIVTLW 121 (191)
T ss_dssp SCEEEECTTTCC---EEEECHHHHCTT-TTTCCSSEECEEEEE
T ss_pred CEEEEeeCCCCe---EEEccHHHhhhH-HhhcCCCCEEEEEEE
Confidence 6689999 7866 779999999997 889999999999887
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=2.3e-39 Score=254.73 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=106.8
Q ss_pred eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065 21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG 100 (150)
Q Consensus 21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (150)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|++++|||||.| |+
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d-gd 78 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPE-GE 78 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEE-TT
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeC-CC
Confidence 58999999999999999999999999999999 99999999999999999999999999999999999999999999 66
Q ss_pred cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065 101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI 141 (150)
Q Consensus 101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~ 141 (150)
.|+||| |||| |+.||++.||++ +||+||++|.|+++
T Consensus 79 ~~~FMD~etye---q~~l~~~~lgd~--~~L~eg~~v~v~~~ 115 (184)
T 1ueb_A 79 EMVFMDLETYE---QFAVPRSRVVGA--EFFKEGMTALGDMY 115 (184)
T ss_dssp EEEEEETTTCC---EEEEEGGGBTTG--GGCCTTCEEEEEEE
T ss_pred EEEEeeCCCce---eEEcCHHHcChh--hhcCCCCEEEEEEE
Confidence 789999 7766 779999999986 89999999766655
No 10
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=7.3e-39 Score=253.21 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=110.6
Q ss_pred eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065 21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG 100 (150)
Q Consensus 21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (150)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+++++++||||.| ++
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd 83 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYND-GE 83 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEEC-SS
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEc-CC
Confidence 79999999999999999999999999999999 99999999999999999999999999999999999999999999 66
Q ss_pred cEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065 101 YLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFIF 142 (150)
Q Consensus 101 ~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~ 142 (150)
.|+||| |||| |+.||++.||++ .+||+||+.|.|++..
T Consensus 84 ~~~FMD~etyE---q~~l~~~~lgd~-~~~L~eg~~v~v~~~~ 122 (191)
T 3tre_A 84 FWHFMTSENYE---QHAASKEAVAEA-KQWLKEEALCMVTMWN 122 (191)
T ss_dssp CEEEEESSSCC---EEEECHHHHGGG-GGGCCTTCEEEEEEET
T ss_pred cEEEccCCchH---heecchhHhhhH-HhhCCCCCEEEEEEEC
Confidence 799999 8765 779999999997 8899999999999874
No 11
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=6.9e-39 Score=257.33 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=107.7
Q ss_pred eeeeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEee
Q psy17065 18 TTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDIS 97 (150)
Q Consensus 18 ~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d 97 (150)
-..|+++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+|++++|||||.|
T Consensus 28 rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~D 106 (215)
T 1yby_A 28 AGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND 106 (215)
T ss_dssp ---CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEE
T ss_pred CCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeC
Confidence 34679999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCcEEEec-CCCceeeeeecChhhHHHHHHhhccCCCeEEEEEe
Q psy17065 98 DDGYLSLMG-DNGELREDLKLPEGELGAQLRSDYDAGKELLVSFI 141 (150)
Q Consensus 98 ~~~~~~fMd-et~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~ 141 (150)
++.|+||| |||| |+.||++.||++ .+||+||++|.|++.
T Consensus 107 -gd~y~FMD~ETyE---Qi~l~~~~lgd~-~~fLkEg~~v~v~~~ 146 (215)
T 1yby_A 107 -GDLYYFMDTETFE---QLPLGKDKIGDA-LKFVKENEIVKVLSH 146 (215)
T ss_dssp -TTEEEEECTTTCC---EEEEEHHHHTTT-TTTCCTTCEEEEEEE
T ss_pred -CCEEEEccCCCCe---eEEecHHHhhhH-HhhCCCCCEEEEEEE
Confidence 66799999 8866 779999999997 889999999888877
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.5e-38 Score=247.80 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=109.5
Q ss_pred eeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCC
Q psy17065 21 PMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDG 100 (150)
Q Consensus 21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (150)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+++++++||||.| ++
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd 81 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFA-DP 81 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEEC-SS
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEec-CC
Confidence 78999999999999999999999999999999 56999999999999999999999999999999999999999999 66
Q ss_pred cEEEecCCCceeeeeecChhhHHHHHHhhccCCCe--EEEEEec
Q psy17065 101 YLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE--LLVSFIF 142 (150)
Q Consensus 101 ~~~fMdet~e~~Eqi~l~~~~lgd~~~~~l~eg~~--v~v~~~~ 142 (150)
.|+||||| |||+.||++.+|++ .+||+||++ |.|++..
T Consensus 82 ~~~FMDet---yEq~~l~~~~lgd~-~~~L~eg~~~~v~v~~~~ 121 (191)
T 3oyy_A 82 LYVFMDSE---FNQYEIEKDDLEGV-LTFIEDGMTDICEAVFYN 121 (191)
T ss_dssp SEEEEETT---CCEEEECGGGCTTT-GGGCCTTCCCCEEEEEET
T ss_pred EEEEEecC---hhheeCChHHhhhH-HhhCcCCCEeEEEEEEEC
Confidence 79999955 55889999999997 889999999 9999874
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.7e-33 Score=219.20 Aligned_cols=133 Identities=26% Similarity=0.525 Sum_probs=122.2
Q ss_pred ccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEcccCcEEEEeecCC--------Ce
Q psy17065 10 ETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGKKYEDICPST--------HN 80 (150)
Q Consensus 10 ~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~~-kpGKhG~A~v~~k~knl~TG~~~e~t~~s~--------~~ 80 (150)
..++|++|.|+|++++.||+|.+|+|+|+||+|++++++ ||||| |+.+.|||||+++|...+++ ++
T Consensus 23 ~~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hn 97 (176)
T 1khi_A 23 GTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQT 97 (176)
T ss_dssp ----CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEE
T ss_pred CCCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCcccccce
Confidence 368999999999999999999999999999999999999 89999 89999999999999999998 89
Q ss_pred EecceEEEEeeEEEEeeCCCcEEEecCCCceeeeeecCh-hhHHHHHHhhccCCCe-EEEEEecccceeeeC
Q psy17065 81 MDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPE-GELGAQLRSDYDAGKE-LLVSFIFLLLFRYCI 150 (150)
Q Consensus 81 ve~~~v~~~~~qyly~d~~~~~~fMdet~e~~Eqi~l~~-~~lgd~~~~~l~eg~~-v~v~~~~~~g~~~~~ 150 (150)
+++|+|+ +||+|.++ ++++.+||+++++.+++.||+ ..|+++++..|.+|.+ +.|+++++||+|.+|
T Consensus 98 m~VPvVk--~yQlldI~-dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~iv 166 (176)
T 1khi_A 98 MLGPVFK--QYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAV 166 (176)
T ss_dssp EEEECCE--EEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEE
T ss_pred eccceeE--EEEEEEEc-CCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEEEE
Confidence 9999996 99999998 899999997788899999997 7899999999999988 559999999999874
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=62.02 E-value=17 Score=25.85 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=41.1
Q ss_pred eeccccccccEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEcccCcEEEEeecCC-CeEecceEEEE
Q psy17065 22 MQCSALRKNGFVML-----KARPCKIVDMSTS---KTGKHGHAKVHMVGLDIFSGKKYEDICPST-HNMDVPFVKRE 89 (150)
Q Consensus 22 i~~~~ikkG~~i~i-----~g~P~~V~~~~~~---kpGKhG~A~v~~k~knl~TG~~~e~t~~s~-~~ve~~~v~~~ 89 (150)
.+..++++|++|.+ +|....+-.++-. +-|+ | .--.+.+|++..|--+|.+|+-. -.++.+.|.++
T Consensus 14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G-~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-G-LHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-G-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-C-CCeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 35668999998876 3554444333322 1133 2 23357899999999999999863 35555555443
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=60.27 E-value=20 Score=26.60 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=40.7
Q ss_pred eeccccccccEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEcccCcEEEEeecCC-CeEecceEEEE
Q psy17065 22 MQCSALRKNGFVML-----KARPCKIVDMSTS---KTGKHGHAKVHMVGLDIFSGKKYEDICPST-HNMDVPFVKRE 89 (150)
Q Consensus 22 i~~~~ikkG~~i~i-----~g~P~~V~~~~~~---kpGKhG~A~v~~k~knl~TG~~~e~t~~s~-~~ve~~~v~~~ 89 (150)
....++++|++|.+ +|....+--++-. +-|+ | .--.+.+|++..|--+|.+|+-. -.++.+.|.++
T Consensus 17 ~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-G-l~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 17 TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-G-FNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-G-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-C-CCeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 34568999998875 4554433333222 1133 2 23357899999999999999863 35555555544
No 16
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=59.79 E-value=9.9 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=23.8
Q ss_pred CCcccEEEEEEEEcccCcEEEEeecCCCeEecc
Q psy17065 52 KHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVP 84 (150)
Q Consensus 52 KhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~ 84 (150)
-|+...+++.+| +-+|+.+..+|++++++..+
T Consensus 2 ~~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~v 33 (84)
T 3qx1_A 2 SHMEPVSKLRIR-TPSGEFLERRFLASNKLQIV 33 (84)
T ss_dssp --CCCEEEEEEE-CTTSCEEEEEEETTSBHHHH
T ss_pred CCCCCeEEEEEE-CCCCCEEEEEeCCCCCHHHH
Confidence 355566777766 57899999999999998743
No 17
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=52.19 E-value=53 Score=22.64 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=18.4
Q ss_pred EEEEEEEEcccCcEEEEeecC
Q psy17065 57 KVHMVGLDIFSGKKYEDICPS 77 (150)
Q Consensus 57 ~v~~k~knl~TG~~~e~t~~s 77 (150)
--.+.+|++..|--+|.+|+-
T Consensus 39 ~~tftvRki~~gvGVEr~fpl 59 (98)
T 2ftc_K 39 GATFILRNVIEGQGVEICFEL 59 (98)
T ss_pred CcEEEEEEeccCceEEEEEec
Confidence 346899999999999999975
No 18
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=43.93 E-value=36 Score=24.31 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=23.0
Q ss_pred eeeeeeccccccccEEEE-CC-----eeEEEEEeeEe
Q psy17065 18 TTYPMQCSALRKNGFVML-KA-----RPCKIVDMSTS 48 (150)
Q Consensus 18 ~t~~i~~~~ikkG~~i~i-~g-----~P~~V~~~~~~ 48 (150)
....+.|++||+|+.|.. +| .|.+|++++..
T Consensus 83 ~~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 83 KLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred cEEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 347789999999998865 44 47777777654
No 19
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=43.17 E-value=31 Score=26.14 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=40.8
Q ss_pred eeccccccccEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEcccCcEEEEeecCC-CeEecceEEEE
Q psy17065 22 MQCSALRKNGFVML-----KARPCKIVDMSTS---KTGKHGHAKVHMVGLDIFSGKKYEDICPST-HNMDVPFVKRE 89 (150)
Q Consensus 22 i~~~~ikkG~~i~i-----~g~P~~V~~~~~~---kpGKhG~A~v~~k~knl~TG~~~e~t~~s~-~~ve~~~v~~~ 89 (150)
....++++|++|.+ +|....+--++-. +-|+ | .--.+.+|++..|--+|.+|+-. -.++.+.|.++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-G-l~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-G-SRKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-G-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-C-CCcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 34567999998876 3443222222211 2233 3 23458999999999999999863 35555555544
No 20
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=43.07 E-value=8 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred cccccEEEECCeeEEEEEeeEecC
Q psy17065 27 LRKNGFVMLKARPCKIVDMSTSKT 50 (150)
Q Consensus 27 ikkG~~i~i~g~P~~V~~~~~~kp 50 (150)
-+.|+.+.++|..|+++.-.+..|
T Consensus 8 Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 8 YTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp ECTTCCEEETTEEECBCSCEEECT
T ss_pred EcCCCEEEECCeEEEEEecCcCcC
Confidence 478999999999999998777644
No 21
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=42.77 E-value=22 Score=25.65 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=19.5
Q ss_pred cccccccEEEECCeeEEEEEe
Q psy17065 25 SALRKNGFVMLKARPCKIVDM 45 (150)
Q Consensus 25 ~~ikkG~~i~i~g~P~~V~~~ 45 (150)
.+|++|+.+.+++.-|+|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999876
No 22
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=41.49 E-value=5.7 Score=28.19 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=25.7
Q ss_pred eccccccccEEEECCeeEEEEEeeEecCCCCcccEEE
Q psy17065 23 QCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVH 59 (150)
Q Consensus 23 ~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~ 59 (150)
.+..+++|+.|.++|+.|.|.++ .|.-||.+.+.
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~v---~PDg~G~~~L~ 104 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDRV---SPDDGGSCHLW 104 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCCC---CSSSCCCTTCB
T ss_pred ccCCCCCCCEEEECCeEEEEeee---ccCCCCeEEEE
Confidence 34567999999999999999874 57555655433
No 23
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=39.11 E-value=48 Score=23.23 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=36.5
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++.
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 47 FVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 666777888999999999999999988888888887765665544
No 24
>3p02_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.55A {Bacteroides ovatus}
Probab=35.70 E-value=75 Score=26.23 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=37.0
Q ss_pred ccccCCCCcceeeeeeccccccccEEEECCeeEEEEEeeE----ecCCCC-cccEEEEEEEEcccCc
Q psy17065 8 HFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMST----SKTGKH-GHAKVHMVGLDIFSGK 69 (150)
Q Consensus 8 ~~~~~~~~~~~t~~i~~~~ikkG~~i~i~g~P~~V~~~~~----~kpGKh-G~A~v~~k~knl~TG~ 69 (150)
.|..|+..+.....+....|..+..-.| |.+|.+... ..|.|+ +.|.+|++.+|=.+|.
T Consensus 97 tI~AG~~~s~~pI~~~~~~Ld~~~~YvL---Pl~I~s~s~~~y~~np~K~y~~~L~~i~~~NdYsG~ 160 (317)
T 3p02_A 97 TIPAGQSHALLPIEFSLDGLDDSQKWAL---PLKVCEDANGTYAVNPRKYYRTAVLRPILFNEFSGR 160 (317)
T ss_dssp EECTTCCCCEEEEEEECTTCCTTSCEEE---EEEEEEC-CGGGGSSTTTTTCEEEEEEEEECTTCEE
T ss_pred EEcCCCEeeeeeEEEEcCCCCCCCeEEE---EEEEEecCCCceEeccccCcceEEEEEEEecccCcc
Confidence 4444444443344455555555554444 888887654 246665 5699999999999885
No 25
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=34.45 E-value=47 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=30.7
Q ss_pred eeeccccccccEEEECCe---eEEEEEeeEecC--------CCCcccEEEEEE
Q psy17065 21 PMQCSALRKNGFVMLKAR---PCKIVDMSTSKT--------GKHGHAKVHMVG 62 (150)
Q Consensus 21 ~i~~~~ikkG~~i~i~g~---P~~V~~~~~~kp--------GKhG~A~v~~k~ 62 (150)
.+..=+||+|+.|.+++- ||.|+.+.+.-+ --+|++.+.++-
T Consensus 58 ~vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 58 QIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp SEEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred hceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 345578999999999975 699998874322 345888877654
No 26
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=33.48 E-value=52 Score=23.23 Aligned_cols=45 Identities=4% Similarity=-0.095 Sum_probs=35.4
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++-
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 48 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 566777888999999999999998888877777777754665544
No 27
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=33.11 E-value=46 Score=23.31 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=35.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++.
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 566677778899999999999999888888888877765665544
No 28
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=32.30 E-value=1.2e+02 Score=21.31 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=31.9
Q ss_pred EEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEE
Q psy17065 43 VDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87 (150)
Q Consensus 43 ~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~ 87 (150)
+++.-.++| +.-.+.+.++|.-+ +-++.+|+|+.+++....+
T Consensus 9 ~~v~~~~~g--~~v~~~ltv~N~s~-~~v~l~f~Sgq~~Df~v~d 50 (120)
T 3isy_A 9 LSIDAIQEP--EQIKFNMSLKNQSE-RAIEFQFSTGQKFELVVYD 50 (120)
T ss_dssp EEEEEEECS--SCEEEEEEEEECSS-SCEEEEESSSCCEEEEEEC
T ss_pred EEEeeccCC--CeEEEEEEEEcCCC-CcEEEEeCCCCEEEEEEEC
Confidence 344444444 56788999999875 7788999999999988876
No 29
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=32.17 E-value=60 Score=22.98 Aligned_cols=45 Identities=7% Similarity=-0.150 Sum_probs=35.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+++.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 51 YKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 667777888999999999999999888888887777754665433
No 30
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=32.04 E-value=72 Score=22.57 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=35.6
Q ss_pred EEEEEcccCcEEEEeecCCCeEecce--EEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPF--VKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~--v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++.. ++-+.++-++.-+|+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 49 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 56667778889999999999999988 8888888777764665544
No 31
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=31.23 E-value=60 Score=23.01 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=34.8
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLS 103 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~ 103 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++
T Consensus 52 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv 95 (135)
T 1b56_A 52 LTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALV 95 (135)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEE
Confidence 56677788899999999999999888887777777765456544
No 32
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=31.17 E-value=24 Score=25.54 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=29.2
Q ss_pred eeEEEEeeCCCcEEEecCCCceeeeeecCh---hhHHHHHHhhcc
Q psy17065 90 DYQLTDISDDGYLSLMGDNGELREDLKLPE---GELGAQLRSDYD 131 (150)
Q Consensus 90 ~~qyly~d~~~~~~fMdet~e~~Eqi~l~~---~~lgd~~~~~l~ 131 (150)
+++|+.-- +--+.|||+.|+..|.|.|.+ +.+.+-+..+|+
T Consensus 54 ~vkyv~Ga-~P~LvLlD~~Ge~~E~I~IekW~tD~I~efL~ekL~ 97 (126)
T 2a4h_A 54 QIKYVRGL-DPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLA 97 (126)
T ss_dssp CCCCCSSC-CCEEEECCSSSCCSEEEECSSSSCSHHHHHHHHHSC
T ss_pred EEEEecCC-CCEEEEecCCCCEeeEeccccCCHHHHHHHHHHHhh
Confidence 45565555 556899998899999999976 556555555554
No 33
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=31.13 E-value=64 Score=22.78 Aligned_cols=45 Identities=9% Similarity=-0.073 Sum_probs=35.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 49 YSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 566777888999999999999999888888888777754665443
No 34
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=30.98 E-value=42 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=24.9
Q ss_pred eeeeccccccccEEEECCeeEEEEEeeE
Q psy17065 20 YPMQCSALRKNGFVMLKARPCKIVDMST 47 (150)
Q Consensus 20 ~~i~~~~ikkG~~i~i~g~P~~V~~~~~ 47 (150)
...+..||..|..|.+.|+.+.|+++..
T Consensus 82 ~~~~~~Dl~VG~~v~i~gR~f~I~dcD~ 109 (133)
T 2z14_A 82 QFYTVYHFNVGTEVVFYGRTFKIYDCDA 109 (133)
T ss_dssp SBCCGGGCCTTCEEEETTEEEEEEEECH
T ss_pred cccCHHHcccCCEEEEecEEEEEEeCCH
Confidence 4578999999999999999999999753
No 35
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=30.59 E-value=1.1e+02 Score=19.87 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=26.9
Q ss_pred cccccccEEEECCeeEEEEEe-eEecCCCCcccEEEEEEEE
Q psy17065 25 SALRKNGFVMLKARPCKIVDM-STSKTGKHGHAKVHMVGLD 64 (150)
Q Consensus 25 ~~ikkG~~i~i~g~P~~V~~~-~~~kpGKhG~A~v~~k~kn 64 (150)
.+|.+++.|.++|..|.|..+ .... ++ +-++.+.++-
T Consensus 66 ~~i~~~~ri~~~g~~y~I~~v~~~~~-~~--~~~l~i~~~~ 103 (109)
T 2kca_A 66 DRIDKKMRVIYRGKIVTFIGDPVDLS-GL--QEITRIKGKE 103 (109)
T ss_dssp CCSSSSEEEEETTEEEEEEEEEEECC-TT--TCEEEEEEEC
T ss_pred CCCCCccEEEECCEEEEEEEeccCcc-cC--cEEEEEEEEE
Confidence 588999999999999999987 5442 33 2355565544
No 36
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=29.91 E-value=50 Score=23.16 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=35.1
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+.|+.+++..++-+.++-++.-+|+.++.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 92 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVC 92 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEE
Confidence 566677778899999999999998888888887777754665544
No 37
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=29.69 E-value=70 Score=22.66 Aligned_cols=43 Identities=9% Similarity=-0.146 Sum_probs=34.0
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYL 102 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~ 102 (150)
+.++...+.+..+.+|+-|+.++...++-+.++-+..-+|+.+
T Consensus 49 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kL 91 (133)
T 3ppt_A 49 WSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAM 91 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEE
T ss_pred EEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEE
Confidence 5667777888999999999999988888777777776646644
No 38
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=28.89 E-value=80 Score=22.27 Aligned_cols=45 Identities=13% Similarity=-0.079 Sum_probs=35.0
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC-CcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD-GYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-++ +.++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 51 FKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 5667777888999999999999988888777777777545 54443
No 39
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=28.62 E-value=66 Score=22.82 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=34.8
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++-..+-+.++-++.-+++.++.
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 555666677888999999999998888888888777765666543
No 40
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=28.01 E-value=1.3e+02 Score=19.89 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=33.0
Q ss_pred eeeccccccccEEEECCeeEEEEEeeEec--CCCCc--ccEEEEEEEEcccCcEEEEeecC
Q psy17065 21 PMQCSALRKNGFVMLKARPCKIVDMSTSK--TGKHG--HAKVHMVGLDIFSGKKYEDICPS 77 (150)
Q Consensus 21 ~i~~~~ikkG~~i~i~g~P~~V~~~~~~k--pGKhG--~A~v~~k~knl~TG~~~e~t~~s 77 (150)
+.+.++|++|..+.+ .++|.+....+ ..|.| ..+..+.+.| .||...=.-|..
T Consensus 7 ~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~ 63 (115)
T 2k50_A 7 MDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTE 63 (115)
T ss_dssp CCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETT
T ss_pred eEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCc
Confidence 356889999998755 56677663222 22224 4677888888 678544444443
No 41
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=27.16 E-value=1.6e+02 Score=21.48 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=14.7
Q ss_pred eeeeccccccccEEEEC
Q psy17065 20 YPMQCSALRKNGFVMLK 36 (150)
Q Consensus 20 ~~i~~~~ikkG~~i~i~ 36 (150)
..+.|++||+|+.|.+-
T Consensus 104 ~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 104 IEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEEGGGCCTTCEEEEC
T ss_pred EEEEHHHCCCCCEEEEc
Confidence 46899999999999874
No 42
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=27.15 E-value=76 Score=22.73 Aligned_cols=45 Identities=7% Similarity=-0.058 Sum_probs=34.4
Q ss_pred EEEEEcccCcEEEEeecCCCeEec--ceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDV--PFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~--~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++ -.++-+.++-++.-+|+.++.
T Consensus 53 ~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 53 FKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 556777888999999999999999 777777777666654665544
No 43
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=26.95 E-value=69 Score=23.32 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=35.9
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC-CcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD-GYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+| +.++.
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 70 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 5677888889999999999999998888888887777545 55543
No 44
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.40 E-value=30 Score=24.36 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=19.2
Q ss_pred HHHhhccCCCeEEEEEecccceeee
Q psy17065 125 QLRSDYDAGKELLVSFIFLLLFRYC 149 (150)
Q Consensus 125 ~~~~~l~eg~~v~v~~~~~~g~~~~ 149 (150)
.+..||.+|.-|.|++- -|+|+.
T Consensus 35 ~a~kFLe~GdKVKvti~--RGRE~~ 57 (112)
T 2crq_A 35 QIQQWIEKKYHVQVTIK--RRKDAE 57 (112)
T ss_dssp HHHHHHHTTCEEEEEEE--CCTTCS
T ss_pred HHHHHHHCCCEEEEEEE--CCcccc
Confidence 35899999999999988 588753
No 45
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=25.92 E-value=69 Score=27.58 Aligned_cols=51 Identities=4% Similarity=-0.106 Sum_probs=37.2
Q ss_pred cccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecCCCeEecceEE
Q psy17065 29 KNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87 (150)
Q Consensus 29 kG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s~~~ve~~~v~ 87 (150)
.|+.+.+||.++-.+. .||+ .+|+++.|.-..+.+...+..++++.++-.+
T Consensus 182 ~gd~~lvNG~~~p~~~----v~g~----~~RlRliNas~~~~~~l~i~dg~~~~vIa~D 232 (488)
T 3od3_A 182 FGDTLLTNGAIYPQHA----APRG----WLRLRLLNGCNARSLNFATSDNRPLYVIASD 232 (488)
T ss_dssp CCSEEEETTBSSCEEE----EEEE----EEEEEEEECCSSCCEEEEETTCCCEEEEEET
T ss_pred CCCEEEEcCCcCccEe----cCCC----EEEEEEEccCCCceeeeeecCCCeEEEEEeC
Confidence 5889999998664432 2443 7999999998888888877667776655443
No 46
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=25.77 E-value=53 Score=23.11 Aligned_cols=45 Identities=13% Similarity=-0.049 Sum_probs=34.9
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-+|+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 49 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 556677778888999999999998888878777777754665544
No 47
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=25.62 E-value=75 Score=22.48 Aligned_cols=45 Identities=11% Similarity=-0.050 Sum_probs=34.1
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEee-CCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDIS-DDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d-~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.- +++.++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 56667777888999999999999888887777776664 4665443
No 48
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=25.58 E-value=75 Score=22.35 Aligned_cols=45 Identities=4% Similarity=-0.106 Sum_probs=35.4
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC-CcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD-GYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-++.-++ +.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 6667778889999999999999998888787777776545 65544
No 49
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=25.45 E-value=81 Score=23.11 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=35.6
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...|.++.+.+|+-|+.+++...+-+.++-+..-+|+.++-
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 566777888999999999999998888888888777665665543
No 50
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=24.97 E-value=74 Score=22.46 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=34.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEec--ceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDV--PFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~--~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++ ..++-+.++-++.-+|+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 49 MIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 567777888999999999999999 877777777776654565433
No 51
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=24.44 E-value=86 Score=22.29 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=34.8
Q ss_pred EEEEEc-ccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDI-FSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl-~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++.. .+.+..+.+|+-|+.+++-.++-+.++-++.-+|+.++.
T Consensus 52 ~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 97 (136)
T 2lba_A 52 FTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVA 97 (136)
T ss_dssp EEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEE
T ss_pred EEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 555666 677889999999999998888888888777765665544
No 52
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=23.69 E-value=87 Score=22.85 Aligned_cols=44 Identities=16% Similarity=-0.058 Sum_probs=35.3
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLS 103 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~ 103 (150)
+.++...|.++.+.+|+-|+.+++...+-+.++-+..-+|+.++
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv 113 (152)
T 3q6l_A 70 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLV 113 (152)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 56677788899999999999999888888888877766566554
No 53
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=23.63 E-value=90 Score=22.31 Aligned_cols=44 Identities=16% Similarity=-0.058 Sum_probs=34.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLS 103 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~ 103 (150)
+.++...+.++.+.+|+-|+.+++...+-+.++-+..-+++.++
T Consensus 57 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv 100 (139)
T 3p6d_A 57 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLV 100 (139)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 56677777889999999999999888787777777766566554
No 54
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=23.52 E-value=1.1e+02 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred eeec-ChhhHHHHHHhhccCCCeEEEEEec
Q psy17065 114 DLKL-PEGELGAQLRSDYDAGKELLVSFIF 142 (150)
Q Consensus 114 qi~l-~~~~lgd~~~~~l~eg~~v~v~~~~ 142 (150)
.|.| ++..+.++++-+.+.|..+.+.+..
T Consensus 57 ~v~i~Sq~E~eEAlkva~k~~n~L~m~v~~ 86 (87)
T 2bkf_A 57 EVSINSQGEYEEALKMAVKQGNQLQMQVHE 86 (87)
T ss_dssp EEEECSHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred EEEEecHHHHHHHHHHhccCCCEEEEEEec
Confidence 5566 4567888888888888888887753
No 55
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=23.44 E-value=94 Score=20.67 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=14.9
Q ss_pred ccccccccEEEEC---CeeEEE
Q psy17065 24 CSALRKNGFVMLK---ARPCKI 42 (150)
Q Consensus 24 ~~~ikkG~~i~i~---g~P~~V 42 (150)
.-+|++|++|.++ ++|..|
T Consensus 37 ll~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 37 VLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHCCTTCEEEEEEETTCCEEE
T ss_pred HhCCCCCCEEEeCCCCCCcEEE
Confidence 3468999999998 567766
No 56
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=22.88 E-value=92 Score=21.88 Aligned_cols=45 Identities=13% Similarity=-0.025 Sum_probs=33.2
Q ss_pred EEEEEcccCcEEEEeecCCCeEecce--EEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPF--VKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~--v~~~~~qyly~d~~~~~~f 104 (150)
+.++...+.+..+.+|+-|+.+++-. ++-+.++-++.-+|+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 49 FTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 56667778889999999999999876 7766766666644565443
No 57
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=22.66 E-value=1.3e+02 Score=19.40 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=15.2
Q ss_pred ccccccccEEEEC---CeeEEEE
Q psy17065 24 CSALRKNGFVMLK---ARPCKIV 43 (150)
Q Consensus 24 ~~~ikkG~~i~i~---g~P~~V~ 43 (150)
.-+|++|++|.++ ++|..|.
T Consensus 33 ll~L~~GdVi~Ld~~~~e~v~i~ 55 (84)
T 1o9y_A 33 LRRLDAGTILEVTGISPGHATLC 55 (84)
T ss_dssp HHTCCTTCEEEECSSCTTEEEEE
T ss_pred HhcCCCCCEEEeCCCCCCCEEEE
Confidence 3468999999998 5676653
No 58
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=22.63 E-value=90 Score=22.99 Aligned_cols=44 Identities=14% Similarity=-0.074 Sum_probs=35.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLS 103 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~ 103 (150)
+.++...|.++.+.+|+-|+.+++-..+-+.++-+..-+++.++
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 118 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLV 118 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 55677788899999999999999888888888888777666554
No 59
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=22.50 E-value=1.2e+02 Score=24.61 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=31.8
Q ss_pred ccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccc
Q psy17065 26 ALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFS 67 (150)
Q Consensus 26 ~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~T 67 (150)
-|.++..|.++|+.|.|..+....-| |...+.+.+++++-
T Consensus 55 ~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 55 FLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp CSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred hhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 48999999999999999988766554 45778899998874
No 60
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=22.34 E-value=72 Score=20.09 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=16.0
Q ss_pred ccccccccEEEECCeeEEEE
Q psy17065 24 CSALRKNGFVMLKARPCKIV 43 (150)
Q Consensus 24 ~~~ikkG~~i~i~g~P~~V~ 43 (150)
...++.|+.|.++|+|+.|.
T Consensus 59 ~~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 59 RCKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp SCCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCCEEEECCEEEEEe
Confidence 34578899999999998765
No 61
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=22.21 E-value=93 Score=21.71 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=34.1
Q ss_pred EEEEEc-ccCcEEEEeecCCCeEecceEEEEeeEEEEeeCCCcEEE
Q psy17065 60 MVGLDI-FSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSL 104 (150)
Q Consensus 60 ~k~knl-~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (150)
+.++.. .+.+..+.+|+-|+.+++-.++-+.++-++.-+|+.++.
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 455666 667889999999999999888888887777764565443
No 62
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.58 E-value=93 Score=20.11 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=21.6
Q ss_pred CceeeeeecChhhHHHHHHhhccCCCeEEEEEec
Q psy17065 109 GELREDLKLPEGELGAQLRSDYDAGKELLVSFIF 142 (150)
Q Consensus 109 ~e~~Eqi~l~~~~lgd~~~~~l~eg~~v~v~~~~ 142 (150)
-+|| ++.+|.+... + - =+++|+++.+.+-.
T Consensus 22 ~ety-YInIPaeI~k-a-L-gIk~gD~fel~ve~ 51 (68)
T 3o27_A 22 HTTF-YLLIPKDIAE-A-L-DIKPDDTFILNMEQ 51 (68)
T ss_dssp CCCE-EEEECHHHHH-H-T-TCCTTCCEEEEEEE
T ss_pred ceEE-EEeCcHHHHH-H-h-CCCCCCEEEEEEec
Confidence 3457 8999988653 2 2 47899999888753
No 63
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=21.51 E-value=84 Score=22.24 Aligned_cols=45 Identities=4% Similarity=-0.164 Sum_probs=33.9
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC-CcEEE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD-GYLSL 104 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (150)
+.++...|.+..+.+|+-|+.+++..++-+.++-++.-++ +.++.
T Consensus 50 ~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 50 FYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 5566777788899999999999988888888777766534 44443
No 64
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=21.36 E-value=1.1e+02 Score=21.63 Aligned_cols=43 Identities=7% Similarity=-0.067 Sum_probs=33.7
Q ss_pred EEEEEcccCcEEEEeecCCCeEecceEEEEeeEEEEeeCC-CcE
Q psy17065 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDD-GYL 102 (150)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~ 102 (150)
+.++...+.+..+.+|+-|+.+++..++-+.++-+..-+| +.+
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kL 94 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKL 94 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeE
Confidence 5566667778899999999999988888888887776645 544
No 65
>3uc2_A Hypothetical protein with immunoglobulin-like FOL; structural genomics, joint center for structural genomics; 2.09A {Pseudomonas aeruginosa}
Probab=21.31 E-value=1.2e+02 Score=22.20 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=24.0
Q ss_pred EEeeEecCCCCcccEEEEEEEEcccCcEEEEeec
Q psy17065 43 VDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76 (150)
Q Consensus 43 ~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~ 76 (150)
+.++-.++|+.-.|.+.-+.+||. |+.....|+
T Consensus 59 lNISVl~~g~pv~a~vsG~a~NL~-gq~~~L~Fr 91 (139)
T 3uc2_A 59 INVVPMEKGKPVEAAVTGSAKDLT-GKVIPLEFR 91 (139)
T ss_dssp EEEEEEETTEECCEEEEEEEECTT-CCEEEECCE
T ss_pred EEEEEecCCCeEEEEEEEEEECCc-CCeEEeeEE
Confidence 445555556655789999999997 777777775
No 66
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.20 E-value=69 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred eeecC-hhhHHHHHHhhccCCCeEEEEEecccc
Q psy17065 114 DLKLP-EGELGAQLRSDYDAGKELLVSFIFLLL 145 (150)
Q Consensus 114 qi~l~-~~~lgd~~~~~l~eg~~v~v~~~~~~g 145 (150)
.|.|. +..+.++++-+.+.|..+.+.|....+
T Consensus 65 ~V~i~Sq~E~eEAlkva~k~~n~L~m~V~~~~~ 97 (101)
T 1wj6_A 65 EVSINSQGEYEEALKMAVKQGNQLQMQVHEGSG 97 (101)
T ss_dssp EECCCSHHHHHHHHHHHHHHTSEEEEECCBCCC
T ss_pred EEEEecHHHHHHHHHHhccCCCEEEEEEeeccc
Confidence 56764 677888888888888899988876544
No 67
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=20.64 E-value=2e+02 Score=21.49 Aligned_cols=45 Identities=4% Similarity=0.113 Sum_probs=31.7
Q ss_pred eeeeccccccccEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEcccCcEEEEeecC
Q psy17065 20 YPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPS 77 (150)
Q Consensus 20 ~~i~~~~ikkG~~i~i~g~P~~V~~~~~~kpGKhG~A~v~~k~knl~TG~~~e~t~~s 77 (150)
+.++.-.+++|+.|.+. +....++ .-.+++.|+-||+.+.+++.+
T Consensus 50 ~~~~~~~v~~GD~i~~t--------V~~~s~~-----~g~~tleN~ttg~~~t~t~t~ 94 (173)
T 1y43_B 50 YDFSDITISEGDSIKVT--------VEATSKS-----SGSATVENLTTGQSVTHTFSG 94 (173)
T ss_dssp EEETTCCCCTTCEEEEE--------EEEEETT-----EEEEEEEETTTTEEEEEEECS
T ss_pred cccccceeCCCCEEEEE--------EEEcCCC-----cEEEEEEECCCCEEEEEEEcC
Confidence 44555668888887764 2333333 335899999999999999966
No 68
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.42 E-value=2.6e+02 Score=20.60 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCeEecceEEEEeeEEEEeeCCCcEEEec-CCCceeeeeecChh
Q psy17065 78 THNMDVPFVKREDYQLTDISDDGYLSLMG-DNGELREDLKLPEG 120 (150)
Q Consensus 78 ~~~ve~~~v~~~~~qyly~d~~~~~~fMd-et~e~~Eqi~l~~~ 120 (150)
+.-..++.++-|-+++.....++.|..-- ++| .|++|.|+++
T Consensus 99 ~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG-~f~dvDLse~ 141 (164)
T 1zso_A 99 NEWRDFASFECRGIELIDFFPSNNFIVEDTKGK-LYYDVNLSDQ 141 (164)
T ss_dssp TSCEEEEEEEEESEEEEEECCCSCEEEEETTSC-EEEEECCTTS
T ss_pred CCceEEEEEECCCeeeEEEecCCcEEEEECCCC-cEEeeecCCC
Confidence 34467889999999999999666576666 888 8999999863
No 69
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=20.26 E-value=1.3e+02 Score=20.82 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=20.9
Q ss_pred eeeeeccccccccEE--EECCeeEEEEEe
Q psy17065 19 TYPMQCSALRKNGFV--MLKARPCKIVDM 45 (150)
Q Consensus 19 t~~i~~~~ikkG~~i--~i~g~P~~V~~~ 45 (150)
+..+..++|.+|..+ .+.|.|..|+..
T Consensus 6 ~~~v~~s~l~~G~~~~v~~~g~pv~v~r~ 34 (129)
T 1rie_A 6 KIEIKLSDIPEGKNMAFKWRGKPLFVRHR 34 (129)
T ss_dssp SEEEEGGGSCTTCEEEEEETTEEEEEEEC
T ss_pred ceEeeHHHCCCCCEEEEEECCeEEEEEEC
Confidence 556699999999854 558999877753
Done!