RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17065
(150 letters)
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta
barrel, alternative splicing, hypusine, protein
biosynthesis; 2.30A {Arabidopsis thaliana}
Length = 167
Score = 176 bits (447), Expect = 1e-57
Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
M D ++ HFE +SGAS TYP +RK G +++K RPCK+V++STSKTGKHGHAK H
Sbjct: 9 MSD-DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 67
Query: 61 VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
V +DIF+ KK EDI PS+HN DVP V R DYQL DI++DG++SL+ D+G ++DLKLP
Sbjct: 68 VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 127
Query: 121 E-LGAQLRSDYDAGKELLVSFI 141
+ L AQ+R +D GK+++VS +
Sbjct: 128 DGLTAQMRLGFDEGKDIVVSVM 149
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI;
1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5
PDB: 1xtd_A
Length = 174
Score = 169 bits (429), Expect = 5e-55
Identities = 70/149 (46%), Positives = 95/149 (63%), Gaps = 8/149 (5%)
Query: 1 MGDIE-DAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVH 59
M D + D + G AS TYP+ AL+K G+V + RPCK++D+S SKTGKHGHAKV
Sbjct: 9 MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68
Query: 60 MVGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISD------DGYLSLMGDNGELRE 113
+V DIF+G + ED PSTHN++VPFVK Y + DI +LSLM D GE RE
Sbjct: 69 IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE 128
Query: 114 DLKL-PEGELGAQLRSDYDAGKELLVSFI 141
DL + P+ L Q++ +D+GK++LV +
Sbjct: 129 DLDMPPDPALATQIKEQFDSGKDVLVVVV 157
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low
resolution, acetylation, hypusine, phosphoprotein,
protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Length = 167
Score = 166 bits (420), Expect = 1e-53
Identities = 95/141 (67%), Positives = 119/141 (84%), Gaps = 2/141 (1%)
Query: 1 MGDIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHM 60
M D E+ FET D+G+S TYPMQCSALRKNGFV++K+RPCKIVDMSTSKTGKHGHAKVH+
Sbjct: 11 MSD-EEHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69
Query: 61 VGLDIFSGKKYEDICPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEG 120
V +DIF+GKK ED+ PSTHNM+VP VKR +YQL DI DDG+LSLM +G+ ++D+K PEG
Sbjct: 70 VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEG 128
Query: 121 ELGAQLRSDYDAGKELLVSFI 141
ELG L++ +D GK+L+V+ I
Sbjct: 129 ELGDSLQTAFDEGKDLMVTII 149
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics
consortium, leukemia, apoptosis, SGC, HY initiation
factor, nucleus; 2.50A {Homo sapiens}
Length = 138
Score = 159 bits (403), Expect = 2e-51
Identities = 90/126 (71%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Query: 16 ASTTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDIC 75
S T+PMQCSALRKNGFV+LK RPCKIV+MSTSKTGKHGHAKVH+VG+DIF+GKKYEDIC
Sbjct: 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60
Query: 76 PSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKE 135
PSTHNMDVP +KR D+QL I DGYLSL+ D+GE+REDL+LPEG+LG ++ YD G+E
Sbjct: 61 PSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEE 119
Query: 136 LLVSFI 141
+L++ +
Sbjct: 120 ILITVL 125
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein;
1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Length = 176
Score = 157 bits (399), Expect = 3e-50
Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 3 DIEDAHFETGDSGASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMV 61
A TG AS T + C +R ++L+ RPC+++ +STS TG+H + V
Sbjct: 16 AAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRYLGV--- 72
Query: 62 GLDIFSGKKYEDI------CPSTHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDL 115
D+F+ + +E+ PS + + Y++ D+ DG + M + G+++++L
Sbjct: 73 --DLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDM-QDGSIVAMTETGDVKQNL 129
Query: 116 KL-PEGELGAQLRSDYDAGKELLV 138
+ + L +L+ +++G+ +
Sbjct: 130 PVIDQSSLWNRLQKAFESGRGSVR 153
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum}
SCOP: b.34.5.2 b.40.4.5
Length = 136
Score = 146 bits (371), Expect = 1e-46
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
T ++ L++ +V++ PC++V++ SKTGKHG AK +V + +F G K P
Sbjct: 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65
Query: 79 HNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYDAGKELLV 138
++VP +++ Q+ + + LM + + +++P + + + G E+ V
Sbjct: 66 AQVEVPIIEKFTAQILSV-SGDVIQLM--DMRDYKTIEVPMKYVEEEAKGRLAPGAEVEV 122
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic
protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2
b.40.4.5
Length = 138
Score = 143 bits (363), Expect = 3e-45
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 17 STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
+Q S L+ ++++ PC+IV+++ S GKHG AK + + IF GK + P
Sbjct: 2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61
Query: 77 STHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGKE 135
++ +DVP + ++ Q+ I+ D +M + E E ++P + + ++R G
Sbjct: 62 TSAEVDVPIIDKKTAQVIAITPDTV-QIM--DMETYETFEVPIDTGVADEIRDQLKEGIN 118
Query: 136 LLV 138
+
Sbjct: 119 VEY 121
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A,
OB-fold, structural genomics, BSGC STRU funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2
b.40.4.5 PDB: 1eif_A
Length = 136
Score = 139 bits (353), Expect = 1e-43
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 17 STTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICP 76
T + +L+ +VM+ PC+IVD+S SK GKHG AK +VG+ IF K E + P
Sbjct: 6 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65
Query: 77 STHNMDVPFVKREDYQLTDISDDGYLSLMGDNGELREDLKLPEGELGAQLRSDYD----A 132
++ ++VP + R Q+ I + +M +L +PEG G + + +
Sbjct: 66 TSSKVEVPIIDRRKGQVLAI-MGDMVQIMDLQTYETLELPIPEGIEGLEPGGEVEYIEAV 124
Query: 133 GKELLVS 139
G+ +
Sbjct: 125 GQYKITR 131
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas
aeruginosa}
Length = 191
Score = 32.5 bits (75), Expect = 0.028
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 27 LRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFV 86
R + P I +K+G+ A V M ++ +G E + + ++ +
Sbjct: 10 FRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIIL 68
Query: 87 KREDYQLTDISDDGY 101
R++ + +D Y
Sbjct: 69 DRKEVTYSYFADPLY 83
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2
b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Length = 184
Score = 29.8 bits (68), Expect = 0.27
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 29 KNG-FVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87
+ G V + + V+ K G+ G AKV ++ +G E S ++ +V+
Sbjct: 8 RPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVE 66
Query: 88 REDYQ 92
+ Q
Sbjct: 67 TRELQ 71
>1yby_A Translation elongation factor P; conserved hypothetical protein,
structural genomics, PSI, protein structure initiative;
1.95A {Clostridium thermocellum}
Length = 215
Score = 29.1 bits (66), Expect = 0.39
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 29 KNG-FVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87
KNG L + ++++ K GK G A V +I +G E T M ++
Sbjct: 38 KNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIE 96
Query: 88 REDYQ 92
R+D Q
Sbjct: 97 RKDMQ 101
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A
{Coxiella burnetii}
Length = 191
Score = 28.6 bits (65), Expect = 0.66
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 29 KNG-FVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87
+ G VM+ PC I+D K GK G A + ++ +G+ E S + V
Sbjct: 13 RGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVV 71
Query: 88 REDYQ 92
+ Q
Sbjct: 72 EVEMQ 76
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 28.6 bits (65), Expect = 0.67
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
ELG + DY GK+L++ + +F+
Sbjct: 28 ELGEMITRDY-EGKDLVLIGVLKGAIMFM 55
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 28.7 bits (65), Expect = 0.68
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
ELG + DY GK+L++ + +F+
Sbjct: 48 ELGEMITRDY-EGKDLVLIGVLKGAIMFM 75
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 28.6 bits (65), Expect = 0.68
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
EL Q+ D+ G+E++V SF+F
Sbjct: 24 ELALQIERDF-EGEEIVVIAVLKGSFVFA 51
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 28.4 bits (64), Expect = 0.68
Identities = 2/30 (6%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 121 ELGAQLRSDY-DAGKELLV------SFIFL 143
+ ++ Y D + + + ++++
Sbjct: 47 DTARRMNEYYKDVAEPVTLVALLTGAYLYA 76
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 28.2 bits (64), Expect = 0.69
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
ELG ++ DY GK + +FIF+
Sbjct: 25 ELGGEIARDY-QGKTPHLICVLNGAFIFM 52
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 28.3 bits (64), Expect = 0.73
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
ELGA + DY L + F+
Sbjct: 46 ELGAIIAEDY-KNTVPLAIGVLKGAMPFM 73
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 28.2 bits (64), Expect = 0.73
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
EL A+L Y K ++ + F
Sbjct: 26 ELAAELTEFY-EDKNPVMICVLTGAVFFY 53
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog,
translation, tRNA, lysyl- synthetase, structural
genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Length = 191
Score = 27.5 bits (62), Expect = 1.3
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 29 KNG-FVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVK 87
+ G +ML P + K GK G A + + +G + E ST + + V
Sbjct: 13 RAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVV 71
Query: 88 REDYQ 92
+
Sbjct: 72 DMNLT 76
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 26.9 bits (60), Expect = 2.7
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
+L ++ Y +E + S F
Sbjct: 75 KLAYDIKKVY-NNEEFHILCLLKGSRGFF 102
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
1qk5_A* 1dbr_A
Length = 233
Score = 26.5 bits (59), Expect = 3.0
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
+L + Y G+EL + S F
Sbjct: 61 KLAYDIHRTY-FGEELHIICILKGSRGFF 88
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 26.4 bits (59), Expect = 3.6
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 7/29 (24%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
L + + G ++ + F
Sbjct: 47 RLARDVMKEM-GGHHIVALCVLKGGYKFF 74
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 26.3 bits (59), Expect = 4.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIFL 143
ELG Q+ Y +L++ SF+F+
Sbjct: 20 ELGQQITEHYQGSSDLVLVGLLRGSFVFM 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.1
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 54 GHAKVHMVGLDIFSGKKYEDICPST----HNMDVPFVKREDYQLTDISDDGYLSLMGDNG 109
G + M G+D+ Y+ + + D F + + DI + ++L G
Sbjct: 1625 GSQEQGM-GMDL-----YKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 110 ELREDLKLPEGELGAQLRSDYDA 132
GE G ++R +Y A
Sbjct: 1678 ----------GEKGKRIRENYSA 1690
Score = 26.2 bits (57), Expect = 6.2
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 19/65 (29%)
Query: 84 PFVKREDYQLTDISDDGYLSLM------GDNGE-LREDLKLPEGELGAQLRSDYDAGKEL 136
PF K+ + L +G L+ G+ + E LR Y L
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE------------LRDLYQTYHVL 183
Query: 137 LVSFI 141
+ I
Sbjct: 184 VGDLI 188
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 26.3 bits (58), Expect = 4.2
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 7/28 (25%)
Query: 121 ELGAQLRSDYDAGKELLV------SFIF 142
L + D +++V + F
Sbjct: 55 RLAKDIMKDI-GYSDIMVLCVLKGGYKF 81
>1xqb_A IR47, hypothetical UPF0066 protein HI0510; structural genomics,
protein structure initiative, PSI, NESG; 2.85A
{Haemophilus influenzae} SCOP: e.56.1.1
Length = 247
Score = 26.2 bits (57), Expect = 4.2
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 23 QCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMD 82
+ R N M K ++ +G+ +H+ +D+ G DI P D
Sbjct: 91 SRATHRPNPLGMSKVELRQV-------ECINGNIFLHLGAVDLVDGTPIFDIKPYIAYAD 143
Query: 83 VPFVKREDY 91
+ +
Sbjct: 144 SEPNAQSSF 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.414
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,368,136
Number of extensions: 131995
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 31
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)