RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17065
(150 letters)
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation
factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Length = 68
Score = 129 bits (327), Expect = 4e-41
Identities = 40/67 (59%), Positives = 52/67 (77%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
TYP+ AL+K G+V + RPCK++D+S SKTGKHGHAKV +V DIF+G + ED PST
Sbjct: 2 TYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 61
Query: 79 HNMDVPF 85
HN++VPF
Sbjct: 62 HNVEVPF 68
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1)
{Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Length = 76
Score = 110 bits (277), Expect = 2e-33
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 15 GASTTYPMQCSALRKNGFVMLKARPCKIVDMSTS-KTGKHGHAKVHMVGLDIFSGKKYED 73
AS T + C +R ++L+ RPC+++ +STS TG+H + +G+D+F+ + +E+
Sbjct: 2 SASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQLHEE 56
Query: 74 ICPSTHNMDVPFVKR 88
++ V+
Sbjct: 57 SSFVSNPAPSVVVQT 71
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation
factor 5a (eIF5a) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 73
Score = 93.7 bits (233), Expect = 8e-27
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 18 TTYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPS 77
T + +L+ +VM+ PC+IVD+S SK GKHG AK +VG+ IF K E + P+
Sbjct: 6 GTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPT 65
Query: 78 THNMDVP 84
+ ++VP
Sbjct: 66 SSKVEVP 72
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation
factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 69
Score = 89.0 bits (221), Expect = 4e-25
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
+Q S L+ ++++ PC+IV+++ S GKHG AK + + IF GK + P++
Sbjct: 3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 62
Query: 79 HNMDVP 84
+DVP
Sbjct: 63 AEVDVP 68
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation
factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 71
Score = 87.2 bits (216), Expect = 2e-24
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 19 TYPMQCSALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPST 78
T ++ L++ +V++ PC++V++ SKTGKHG AK +V + +F G K P
Sbjct: 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65
Query: 79 HNMDVP 84
++VP
Sbjct: 66 AQVEVP 71
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic
initiation translation factor 5a (eIF5a) {Leishmania
infantum [TaxId: 5671]}
Length = 79
Score = 77.8 bits (192), Expect = 1e-20
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 86 VKREDYQLTDISDD------GYLSLMGDNGELREDLKLP-EGELGAQLRSDYDAGKELLV 138
VK Y + DI + +LSLM D GE REDL +P + L Q++ +D+GK++LV
Sbjct: 1 VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLV 60
Query: 139 S 139
Sbjct: 61 V 61
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue
(Hex1) {Filamentous fungi (Neurospora crassa) [TaxId:
5141]}
Length = 71
Score = 62.4 bits (152), Expect = 1e-14
Identities = 10/50 (20%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 89 EDYQLTDISDDGYLSLMGDNGELREDLKL-PEGELGAQLRSDYDAGKELL 137
+ Y++ D+ DG + M + G+++++L + + L +L+ +++G+ +
Sbjct: 2 KQYRVLDM-QDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSV 50
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain
{Thermus thermophilus HB8 [TaxId: 300852]}
Length = 63
Score = 31.1 bits (71), Expect = 0.008
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 25 SALRKNGFVMLKARPCKIVDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMD 82
+ LR V + + V+ K G+ G AKV ++ +G E S ++
Sbjct: 5 TDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLE 61
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick
C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
Length = 130
Score = 24.2 bits (52), Expect = 6.5
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 19/91 (20%)
Query: 39 PCKI---------VDMSTSKTGKHGHAKVHMVGLDIFSGKKYEDICPSTHNMDVPFVKRE 89
PCK+ V +++ + A VH + + I + + P K +
Sbjct: 27 PCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDK 86
Query: 90 DY----------QLTDISDDGYLSLMGDNGE 110
Y + I L D +
Sbjct: 87 TYNYVNKLPVKNEYPSIKVVVEWELTDDKNQ 117
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human
(Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 23.5 bits (50), Expect = 6.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 10 ETGDSGASTTYPMQCSALRKNGFVMLKARPCK 41
E SG YP N ++ L+AR C+
Sbjct: 57 ELEQSGYYVCYPRGSKPEDANFYLYLRARVCE 88
>d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase,
C-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 180
Score = 23.9 bits (52), Expect = 8.8
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 111 LREDLKLPEGELGAQLRSDYDAGKELLV 138
+R LG + E++
Sbjct: 132 VRSYASTHWHTLGKNVGESIREYFEIIS 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.414
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,769
Number of extensions: 25132
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)