BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17066
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R4E0|NDUB5_MACFA NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Macaca fascicularis GN=NDUFB5 PE=2 SV=1
Length = 189
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 36 TSTVKYSGGHDNH-FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTE 94
+ V++SGGH F IKPS++ +F FY+ + G+P + II + NVFIG A L E
Sbjct: 41 VAPVRHSGGHGKRLFVIKPSRFYDIRFLKLLRFYIALTGIPVVIIITLVNVFIGEAELAE 100
Query: 95 IPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
IPEGY P+HWEY+KHPI+R+IA+ + SP++IYEK M L E +++ ++ +LM
Sbjct: 101 IPEGYIPEHWEYYKHPISRWIARNFYDSPEKIYEKSMAVLQIEAEKAELRLKELEVRRLM 160
Query: 155 GERNDQQVYYYKPV 168
R D YYY+ +
Sbjct: 161 RMRGDGPWYYYETI 174
>sp|Q0MQD6|NDUB5_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Pongo pygmaeus GN=NDUFB5 PE=2 SV=1
Length = 189
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 36 TSTVKYSGGHDNH-FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTE 94
+ V++SG H F I+PS++ +F FY+ + G+P I + NVFIG A L E
Sbjct: 41 AAPVRHSGAHGKRLFFIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
Query: 95 IPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
IPEGY P+HWEY+KHPI+R+IA+ + SP++IYE+ M L E +++ ++ KLM
Sbjct: 101 IPEGYIPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAETAELRLKELEVRKLM 160
Query: 155 GERNDQQVYYYKPV 168
R D YYY+ +
Sbjct: 161 RVRGDGPWYYYETI 174
>sp|Q0MQD8|NDUB5_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Pan troglodytes GN=NDUFB5 PE=2 SV=1
Length = 189
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 36 TSTVKYSGGHDNH-FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTE 94
+ V++SG H F I+PS++ +F FY+ + G+P I + NVFIG A L E
Sbjct: 41 AAPVRHSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
Query: 95 IPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
IPEGY P+HWEY+KHPI+R+IA+ + SP++IYE+ M L E +++ ++ KLM
Sbjct: 101 IPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLM 160
Query: 155 GERNDQQVYYYKPV 168
R D YYY+ +
Sbjct: 161 HVRGDGPWYYYETI 174
>sp|O43674|NDUB5_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Homo sapiens GN=NDUFB5 PE=1 SV=1
Length = 189
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 36 TSTVKYSGGHDNH-FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTE 94
+ V++SG H F I+PS++ +F FY+ + G+P I + NVFIG A L E
Sbjct: 41 AAPVRHSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
Query: 95 IPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
IPEGY P+HWEY+KHPI+R+IA+ + SP++IYE+ M L E +++ ++ KLM
Sbjct: 101 IPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLM 160
Query: 155 GERNDQQVYYYKPV 168
R D YYY+ +
Sbjct: 161 HVRGDGPWYYYETI 174
>sp|Q0MQD7|NDUB5_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFB5 PE=2
SV=1
Length = 189
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 36 TSTVKYSGGHDNH-FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTE 94
+ V++SG H F I+PS++ +F FY+ + G+P I + NVFIG A L E
Sbjct: 41 AAPVRHSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
Query: 95 IPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
IPEGY P+HWEY+KHPI+R+IA+ + SP++IYE+ M L E +++ ++ KLM
Sbjct: 101 IPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLM 160
Query: 155 GERNDQQVYYYKPV 168
R D YYY+ +
Sbjct: 161 HVRGDGPWYYYETI 174
>sp|Q9CQH3|NDUB5_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Mus musculus GN=Ndufb5 PE=1 SV=1
Length = 189
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 1 MKKSSSSNLKSFRPRVRVGCVQSLSTIFYHYIGLKTSTVKYSGGHDNH-FSIKPSQWQWD 59
++++S S L + R R G + + + V++SG H F +KPS +
Sbjct: 7 LQRASVSALTALSCR-RAGPRLGVGSFLTRSFPKTVAPVRHSGDHGKRLFVVKPSLYYDA 65
Query: 60 KFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTC 119
+F FY+M+ G+P + I + N+FIG A L EIPEGY P+HWEY+KHPI+R+IA+
Sbjct: 66 RFLRLMKFYLMLTGIPVIIGITLVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNF 125
Query: 120 HTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYYY 165
+ P++ YEK + L E +++ ++ +LM R D Y +
Sbjct: 126 YDGPEKNYEKTLAILQIESEKAELRLKEQEVRRLMRARGDGPWYQF 171
>sp|Q02380|NDUB5_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5,
mitochondrial OS=Bos taurus GN=NDUFB5 PE=1 SV=1
Length = 189
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 4 SSSSNLKSFRPRVRVGCVQSLSTIFYHYIGLKTSTVKYSGGHDNH-FSIKPSQWQWDKFK 62
S+ + L R R+G L+ F + + V++SG H F IKPS + +F
Sbjct: 13 SAVAALSGRRLGTRLGFGGFLTRDFPKTV----APVRHSGDHGKRLFIIKPSGFYDKRFL 68
Query: 63 DFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHTS 122
FY+++ G+P I + NVFIG A L EIPEGY P+HWEY KHPI+R+IA+T
Sbjct: 69 KLLRFYILLTGIPVAIGITLINVFIGEAELAEIPEGYVPEHWEYFKHPISRWIARTFFDG 128
Query: 123 PQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYYY 165
P++ YE+ M L E +++ ++ +LM R D ++Y
Sbjct: 129 PEKNYERTMAILQIEAEKAELRLKELEVRRLMRARGDGPWFHY 171
>sp|Q03687|YMP0_YEAST Uncharacterized membrane protein YMR010W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1
SV=1
Length = 405
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 56 WQWDKFKDFFHFYVMIGGLPCLAIIFVSNVF 86
WQWD K+F+ F + + L F+SN+
Sbjct: 213 WQWDDDKNFWRFLALFATVQILVTFFISNIL 243
>sp|Q20255|TTC21_CAEEL Tetratricopeptide repeat protein 21 homolog OS=Caenorhabditis elegans
GN=ZK328.7/F40H6.3 PE=2 SV=3
Length = 1324
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 101 PQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTN----KIDKLMGE 156
PQHW H ++R + C Q EK +DR E++ + N + + G+
Sbjct: 993 PQHW----HALSRVVELFCRNGEQNAAEKHLDRAKEVNPRCVTESGYNVCRGRFEWYTGD 1048
Query: 157 RNDQQVYYYK 166
+N+ YY +
Sbjct: 1049 QNEALRYYSR 1058
>sp|Q6F166|SYFB_MESFL Phenylalanine--tRNA ligase beta subunit OS=Mesoplasma florum
(strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1)
GN=pheT PE=3 SV=1
Length = 793
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 24 LSTIFYHYIGLKTSTVKYSGGHD---NHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAI 79
++T+ + +IGLK + + HD H ++K +Q +KF++ + +I G P + I
Sbjct: 226 VNTVSHTFIGLKNTNTPFDSSHDVWLKHSNVKSAQ---NKFENIANMATLISGQPFILI 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,594,652
Number of Sequences: 539616
Number of extensions: 3031731
Number of successful extensions: 7699
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7691
Number of HSP's gapped (non-prelim): 15
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)