Query psy17066
Match_columns 192
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 20:59:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09781 NDUF_B5: NADH:ubiquin 100.0 3.1E-79 6.8E-84 512.0 13.6 163 6-173 14-177 (187)
2 KOG4632|consensus 100.0 2.2E-76 4.7E-81 490.0 13.4 171 8-189 14-185 (187)
3 KOG2629|consensus 65.6 34 0.00074 31.7 7.8 88 42-159 65-157 (300)
4 KOG3927|consensus 51.1 13 0.00027 34.2 2.6 36 43-83 31-66 (300)
5 PF10993 DUF2818: Protein of u 49.7 25 0.00055 27.6 3.7 42 57-112 36-77 (95)
6 cd00925 Cyt_c_Oxidase_VIa Cyto 44.3 11 0.00025 28.7 1.0 37 71-109 22-58 (86)
7 PF07423 DUF1510: Protein of u 42.7 24 0.00051 31.0 2.8 35 54-88 1-37 (217)
8 PF03040 CemA: CemA family; I 41.6 1.4E+02 0.0031 26.3 7.5 64 65-155 10-75 (230)
9 CHL00008 petG cytochrome b6/f 41.2 17 0.00038 24.2 1.4 20 65-84 5-24 (37)
10 PRK00665 petG cytochrome b6-f 40.7 18 0.00039 24.2 1.4 19 66-84 6-24 (37)
11 KOG3798|consensus 38.4 24 0.00053 32.9 2.3 31 87-128 253-284 (343)
12 PF08664 YcbB: YcbB domain; I 33.5 1.2E+02 0.0025 24.9 5.3 46 111-156 24-77 (134)
13 PF13265 DUF4056: Protein of u 30.1 46 0.00099 30.5 2.7 48 125-173 203-251 (270)
14 PF02684 LpxB: Lipid-A-disacch 28.9 1.2E+02 0.0026 28.2 5.3 70 87-157 268-361 (373)
15 COG1422 Predicted membrane pro 28.6 74 0.0016 28.0 3.6 33 125-157 75-107 (201)
16 PF04789 DUF621: Protein of un 26.8 40 0.00088 31.3 1.8 48 54-101 37-86 (305)
17 PF09803 DUF2346: Uncharacteri 22.4 3.1E+02 0.0067 20.5 5.5 17 65-82 9-25 (80)
18 cd08405 C2B_Synaptotagmin-7 C2 21.1 31 0.00066 26.1 -0.1 33 83-115 97-133 (136)
19 PF06295 DUF1043: Protein of u 20.9 51 0.0011 26.1 1.1 15 68-83 1-15 (128)
No 1
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=100.00 E-value=3.1e-79 Score=511.96 Aligned_cols=163 Identities=42% Similarity=0.705 Sum_probs=153.9
Q ss_pred cccccCCCCCceeeeccccchhhhhhhcccccceeccCCCC-ceeEecCCchhHHHhhhhHHHHHhhhhhhHHHHhhhhe
Q psy17066 6 SSNLKSFRPRVRVGCVQSLSTIFYHYIGLKTSTVKYSGGHD-NHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 6 ~~~~~~~r~~~r~~c~~~~s~~~~~~~~l~~~~r~~sg~hg-r~f~IrPS~f~~~rFkDllhFY~lLg~IPv~~~it~vN 84 (192)
+++|+++++++++||+++.++.+++. .++| ++|||| |+|+||||+|||+||||++|||+|||+|||++||||||
T Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~~~----~~vr-~~~~Hg~r~f~ikps~~~~~rfkdl~hFY~lLg~IPv~~~it~vN 88 (187)
T PF09781_consen 14 AARLSGRKLGPRLGNGLFNTLGFPRK----VPVR-HSSDHGKRMFVIKPSRFQDNRFKDLLHFYILLGGIPVAIIITYVN 88 (187)
T ss_pred HHHhccccCCcccccchhcccCCccc----cccc-cCCCCCceeEEECcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999998 5445 778899 99999999999999999999999999999999999999
Q ss_pred eeeecceeccCCCCCCCCcccccccchhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q psy17066 85 VFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYY 164 (192)
Q Consensus 85 vFiGpAeLaeIPEgY~P~hWEY~kHPItR~iARy~~~sPqq~YEk~la~l~~E~eK~~lR~~E~eVr~lM~eRgDy~~~y 164 (192)
||||||||+||||||+|||||||||||||||||||++||||+|||+||+||+|+||++||++|+||+++|+|||||||||
T Consensus 89 vFiGpAeLaeIPEgY~P~hWEY~kHPItR~iAry~~~spq~~YEk~la~l~~e~ek~~lr~~e~~Vr~lm~eRgD~~~~y 168 (187)
T PF09781_consen 89 VFIGPAELAEIPEGYEPEHWEYYKHPITRWIARYFYPSPQKNYEKMLAYLQIENEKAELRLLEKEVRRLMRERGDYPWYY 168 (187)
T ss_pred eeeeeeeeccCCCCCCCcceeeccCcHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccchh
Q psy17066 165 YKPVHTNHF 173 (192)
Q Consensus 165 Y~p~~~k~l 173 (192)
|+|++.+..
T Consensus 169 Y~p~~k~~i 177 (187)
T PF09781_consen 169 YEPVDKELI 177 (187)
T ss_pred eecCCHHHh
Confidence 988554443
No 2
>KOG4632|consensus
Probab=100.00 E-value=2.2e-76 Score=490.01 Aligned_cols=171 Identities=35% Similarity=0.598 Sum_probs=164.1
Q ss_pred cccCCCCCceeeeccccchhhhhhhcccccceeccCCCC-ceeEecCCchhHHHhhhhHHHHHhhhhhhHHHHhhhheee
Q psy17066 8 NLKSFRPRVRVGCVQSLSTIFYHYIGLKTSTVKYSGGHD-NHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVF 86 (192)
Q Consensus 8 ~~~~~r~~~r~~c~~~~s~~~~~~~~l~~~~r~~sg~hg-r~f~IrPS~f~~~rFkDllhFY~lLg~IPv~~~it~vNvF 86 (192)
.+++|-+..+.+|++++.+.+ |+|||||| |+|+||||+|+|+||||||||||+||+|||++|++|+|||
T Consensus 14 ~as~R~~~~~p~~~~~l~~~~----------rr~~gdHg~~~f~irPsrf~~~rfkdllhFY~~lg~iPV~~~~~y~nif 83 (187)
T KOG4632|consen 14 CASGRSAFLKPSTSGFLIPAI----------RRHSGDHGARVFRIRPSRFIVNRFKDLLHFYFILGFIPVLFCLAYNNIF 83 (187)
T ss_pred HhccchhhcCcCcccchhhhh----------hhcCCcccceeEEecchHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHhe
Confidence 467888899999999888743 46999999 9999999999999999999999999999999999999999
Q ss_pred eecceeccCCCCCCCCcccccccchhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeee
Q psy17066 87 IGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYYYK 166 (192)
Q Consensus 87 iGpAeLaeIPEgY~P~hWEY~kHPItR~iARy~~~sPqq~YEk~la~l~~E~eK~~lR~~E~eVr~lM~eRgDy~~~yY~ 166 (192)
||+|||+||||||+|+||||+||||+|||||||++||||+|||+||+|++|+|||+||++|+|||+||+||||||||||+
T Consensus 84 ~G~aeLaeiPEGy~P~HWeyekhPIsrwiar~f~~Sd~~~yEr~layl~~e~ekA~~R~~E~eVr~lm~eR~Dy~~yyY~ 163 (187)
T KOG4632|consen 84 YGTAELAEIPEGYAPHHWEYEKHPISRWIARWFGVSDVEHYERNLAYLEKEGEKARWRQIEQEVRHLMGERWDYKGYYYQ 163 (187)
T ss_pred ecHHHHhhCCCCCCCccceeecCcHHHHHHHHhcCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccCCCceEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhhhHHHHHhhhhhhcC
Q psy17066 167 PVHTNHFTSREKEAEEFRDVVSG 189 (192)
Q Consensus 167 p~~~k~l~r~~ke~~~~~~~~~g 189 (192)
|+++++. ++.||+.|..|...|
T Consensus 164 p~~s~~~-~i~ke~~D~~e~~~~ 185 (187)
T KOG4632|consen 164 PVSSTGR-WIAKEMRDQYEQHGH 185 (187)
T ss_pred cccccch-HhHHHHHHHHHhhcC
Confidence 9999999 999999999988765
No 3
>KOG2629|consensus
Probab=65.63 E-value=34 Score=31.74 Aligned_cols=88 Identities=17% Similarity=0.354 Sum_probs=61.8
Q ss_pred cCCCCceeEecCCchhHHHhhhhHHHHHhhhhhhHHHHhhhheeeeecceeccCCCCCCCCcccccccchhHHHHhhcCC
Q psy17066 42 SGGHDNHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHT 121 (192)
Q Consensus 42 sg~hgr~f~IrPS~f~~~rFkDllhFY~lLg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kHPItR~iARy~~~ 121 (192)
+++| .++.+.|-.+-..||+|.++-=+++++|-.++..+ ..+|++.+|++
T Consensus 65 ~~~p-~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~-----------------------------~K~YV~P~~l~ 114 (300)
T KOG2629|consen 65 SGGP-PLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRF-----------------------------VKSYVLPRFLG 114 (300)
T ss_pred CCCc-hhhhcCCCccchhhHHHHHHHHHHHhhHHHHHHHH-----------------------------HHHHHHHHhhC
Confidence 4523 88889999999999999766555566654443332 36899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHhhhcCC
Q psy17066 122 SPQEIYEKKMDRLYELDEIRKIQ--KV---TNKIDKLMGERND 159 (192)
Q Consensus 122 sPqq~YEk~la~l~~E~eK~~lR--~~---E~eVr~lM~eRgD 159 (192)
-++..||..-..|+.+.-+++-. .+ -.+|+++|.+-.+
T Consensus 115 ~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 115 ESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999998887776632 22 3344555555444
No 4
>KOG3927|consensus
Probab=51.11 E-value=13 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCCCceeEecCCchhHHHhhhhHHHHHhhhhhhHHHHhhhh
Q psy17066 43 GGHDNHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVS 83 (192)
Q Consensus 43 g~hgr~f~IrPS~f~~~rFkDllhFY~lLg~IPv~~~it~v 83 (192)
-++|..|-.++|+|.. ++-||+++-++.++++++.+
T Consensus 31 ~~~~~~~GRT~~sW~~-----IllfYivFY~~la~lf~~~~ 66 (300)
T KOG3927|consen 31 PETGTFLGRTGSSWAK-----ILLFYIVFYGVLAALFAGCM 66 (300)
T ss_pred cccCeEECcccccHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4566777788899853 56666665555555555554
No 5
>PF10993 DUF2818: Protein of unknown function (DUF2818); InterPro: IPR016768 There is currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain transmembrane segments.
Probab=49.75 E-value=25 Score=27.63 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=29.3
Q ss_pred hHHHhhhhHHHHHhhhhhhHHHHhhhheeeeecceeccCCCCCCCCcccccccchh
Q psy17066 57 QWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPIT 112 (192)
Q Consensus 57 ~~~rFkDllhFY~lLg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kHPIt 112 (192)
-|.|+..++-+|++.|+|-.++=-. .|. =.|..||+|---.+
T Consensus 36 ~~~rl~El~~~y~~vg~la~~lE~~-----~G~---------v~~QgWeFYavt~~ 77 (95)
T PF10993_consen 36 FWWRLLELLVLYFLVGLLAFLLEAR-----AGQ---------VHPQGWEFYAVTLC 77 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----cCC---------cCCCCcchhHHHHH
Confidence 5889999999999999875443322 222 25888999864443
No 6
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=44.33 E-value=11 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=24.9
Q ss_pred hhhhhHHHHhhhheeeeecceeccCCCCCCCCccccccc
Q psy17066 71 IGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKH 109 (192)
Q Consensus 71 Lg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kH 109 (192)
+++||+ ++++.+|+|....+=.+ |+.-++..++|-+=
T Consensus 22 ~va~P~-v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~I 58 (86)
T cd00925 22 YVALPA-VALCMLNAYLKHKEHEE-HERPEFVEYEHLNI 58 (86)
T ss_pred hhHHHH-HHHHHHHHHhhhhcccc-cCCCCCCCCcccee
Confidence 456776 45677899988777665 55556667777543
No 7
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=42.75 E-value=24 Score=30.96 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=22.4
Q ss_pred CchhHH-Hhhhh-HHHHHhhhhhhHHHHhhhheeeee
Q psy17066 54 SQWQWD-KFKDF-FHFYVMIGGLPCLAIIFVSNVFIG 88 (192)
Q Consensus 54 S~f~~~-rFkDl-lhFY~lLg~IPv~~~it~vNvFiG 88 (192)
|||+-+ +-++. .-+=+++|++=++|+|...++|+|
T Consensus 1 SRf~~r~KrRK~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 1 SRFQQRQKRRKTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred CchhHHHHhhhhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 455533 33222 333456777778999999999995
No 8
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=41.59 E-value=1.4e+02 Score=26.29 Aligned_cols=64 Identities=13% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHHHHhhhhhhHHHHhhhheeeeecceeccCCCCCCCCcccccccchhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q psy17066 65 FHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQ 144 (192)
Q Consensus 65 lhFY~lLg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kHPItR~iARy~~~sPqq~YEk~la~l~~E~eK~~lR 144 (192)
+.|-+.|-++|.++-...-|.+++|. ++.|+ .+...|-.+...|+|+--.+++
T Consensus 10 lryll~LI~vP~lI~~l~k~~~l~P~--------------------v~~~w-------n~~q~eiFLN~~qEe~aleel~ 62 (230)
T PF03040_consen 10 LRYLLSLIFVPWLISFLSKKFLLEPW--------------------VEYWW-------NTDQSEIFLNSIQEEEALEELQ 62 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchH--------------------HHHHh-------CcchhhhhccHHHHHHHHHHHH
Confidence 56667799999999999999989884 12222 1122355677777777777777
Q ss_pred HHHHHHH--HHhh
Q psy17066 145 KVTNKID--KLMG 155 (192)
Q Consensus 145 ~~E~eVr--~lM~ 155 (192)
..|.+.+ .+++
T Consensus 63 ~fEE~l~fe~lI~ 75 (230)
T PF03040_consen 63 RFEELLYFEELIG 75 (230)
T ss_pred HHHHHHHHHHHHc
Confidence 7766653 4553
No 9
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=41.24 E-value=17 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=15.3
Q ss_pred HHHHHhhhhhhHHHHhhhhe
Q psy17066 65 FHFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 65 lhFY~lLg~IPv~~~it~vN 84 (192)
+-+=++||.||+.+...+|.
T Consensus 5 lL~GiVLGlipvTl~Glfva 24 (37)
T CHL00008 5 LLFGIVLGLIPITLAGLFVT 24 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHH
Confidence 34557899999998887764
No 10
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=40.67 E-value=18 Score=24.17 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=14.8
Q ss_pred HHHHhhhhhhHHHHhhhhe
Q psy17066 66 HFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 66 hFY~lLg~IPv~~~it~vN 84 (192)
-+=++||.||+.+...+|.
T Consensus 6 L~GiVLGlipiTl~Glfva 24 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVA 24 (37)
T ss_pred hhhHHHHhHHHHHHHHHHH
Confidence 3457899999998887764
No 11
>KOG3798|consensus
Probab=38.44 E-value=24 Score=32.87 Aligned_cols=31 Identities=42% Similarity=0.816 Sum_probs=26.3
Q ss_pred eecceeccCC-CCCCCCcccccccchhHHHHhhcCCChHHHHH
Q psy17066 87 IGPATLTEIP-EGYTPQHWEYHKHPITRFIAKTCHTSPQEIYE 128 (192)
Q Consensus 87 iGpAeLaeIP-EgY~P~hWEY~kHPItR~iARy~~~sPqq~YE 128 (192)
.||+.||-|| -.|+| ||..++=+-+||+.-|
T Consensus 253 fGpfdLAaiPiGaYeP-----------rWfmK~~HInPeEav~ 284 (343)
T KOG3798|consen 253 FGPFDLAAIPIGAYEP-----------RWFMKSQHINPEEAVE 284 (343)
T ss_pred cCCcceeeccccccCc-----------hhhcccccCCHHHHHH
Confidence 5999999999 67888 6888888999987643
No 12
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=33.47 E-value=1.2e+02 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.287 Sum_probs=31.0
Q ss_pred hhHHHHhhcCCCh------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Q psy17066 111 ITRFIAKTCHTSP------QEIYEKKMDRL--YELDEIRKIQKVTNKIDKLMGE 156 (192)
Q Consensus 111 ItR~iARy~~~sP------qq~YEk~la~l--~~E~eK~~lR~~E~eVr~lM~e 156 (192)
|..|+..+=...+ .+.|++..+.. ..+....+.+..|++|||.+..
T Consensus 24 Ii~~l~~~~~~~~~~~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQRIRRai~~ 77 (134)
T PF08664_consen 24 IIEYLIEQEKSFSQNFPSLKEIFEELAQKKLASDEEIEKEKKAIEQRIRRAIKQ 77 (134)
T ss_pred HHHHHHHhccccCcCCCcHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 3445555444444 88898887765 4555566778899999987653
No 13
>PF13265 DUF4056: Protein of unknown function (DUF4056)
Probab=30.15 E-value=46 Score=30.52 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcce-eeeecccchh
Q psy17066 125 EIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVY-YYKPVHTNHF 173 (192)
Q Consensus 125 q~YEk~la~l~~E~eK~~lR~~E~eVr~lM~eRgDy~~~-yY~p~~~k~l 173 (192)
+.|++.|... ......+|-..-.+..+.|-+.=||.|| ..+++.+|++
T Consensus 203 ~~f~~am~~~-l~~aL~~Lga~~~~~T~~~f~~lDG~WWdS~rrvP~K~l 251 (270)
T PF13265_consen 203 EQFNQAMTQA-LPQALHQLGAVSKSETRAQFDQLDGIWWDSQRRVPDKFL 251 (270)
T ss_pred HHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHhcCccccCCCCCCCceE
Confidence 5566666554 2223333333345666778888999999 5678888886
No 14
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=28.87 E-value=1.2e+02 Score=28.21 Aligned_cols=70 Identities=29% Similarity=0.428 Sum_probs=46.8
Q ss_pred eecceeccCCCCCCCCcccccccchhHHHHhhcC------------------------CChHHHHHHHHHHHHHHHHHHH
Q psy17066 87 IGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCH------------------------TSPQEIYEKKMDRLYELDEIRK 142 (192)
Q Consensus 87 iGpAeLaeIPEgY~P~hWEY~kHPItR~iARy~~------------------------~sPqq~YEk~la~l~~E~eK~~ 142 (192)
-|.|+|+--=-| +|--==|--+|+|-||||.+. -+|++..+..+..|...+...+
T Consensus 268 SGTaTLE~Al~g-~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~ 346 (373)
T PF02684_consen 268 SGTATLEAALLG-VPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKK 346 (373)
T ss_pred CCHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHH
Confidence 366665432222 344444677899999999983 3688888888888877766555
Q ss_pred HHHHHHHHHHHhhhc
Q psy17066 143 IQKVTNKIDKLMGER 157 (192)
Q Consensus 143 lR~~E~eVr~lM~eR 157 (192)
.+...+++++++++.
T Consensus 347 ~~~~~~~~~~~~~~~ 361 (373)
T PF02684_consen 347 QKELFREIRQLLGPG 361 (373)
T ss_pred HHHHHHHHHHhhhhc
Confidence 555666677766553
No 15
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.61 E-value=74 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17066 125 EIYEKKMDRLYELDEIRKIQKVTNKIDKLMGER 157 (192)
Q Consensus 125 q~YEk~la~l~~E~eK~~lR~~E~eVr~lM~eR 157 (192)
+++.|+|..+|+|-++|+.+.-+..++++..++
T Consensus 75 ~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 75 KELQKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 577888888888888877654444454444443
No 16
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=26.76 E-value=40 Score=31.32 Aligned_cols=48 Identities=29% Similarity=0.408 Sum_probs=38.7
Q ss_pred CchhHHHhhhhHHHHHhhhhhhHHHHhhhheeee-eccee-ccCCCCCCC
Q psy17066 54 SQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFI-GPATL-TEIPEGYTP 101 (192)
Q Consensus 54 S~f~~~rFkDllhFY~lLg~IPv~~~it~vNvFi-GpAeL-aeIPEgY~P 101 (192)
|-+.|..||.+-.|.+++-..-.+.+++-.|.+| =||+| .-+.++.+.
T Consensus 37 ~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~ 86 (305)
T PF04789_consen 37 SIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ 86 (305)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc
Confidence 4468999999999999988887888999999999 59999 556555443
No 17
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=22.44 E-value=3.1e+02 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHHHHhhhhhhHHHHhhh
Q psy17066 65 FHFYVMIGGLPCLAIIFV 82 (192)
Q Consensus 65 lhFY~lLg~IPv~~~it~ 82 (192)
++|=+-|+ +||+++..+
T Consensus 9 fKfg~Yv~-fPI~~~~~f 25 (80)
T PF09803_consen 9 FKFGMYVF-FPIGMFYYF 25 (80)
T ss_pred HHHHHHHH-HHHHHHHhc
Confidence 44433344 899976643
No 18
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=21.13 E-value=31 Score=26.10 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=24.9
Q ss_pred heeeeecceeccCCCCCCCCcc----cccccchhHHH
Q psy17066 83 SNVFIGPATLTEIPEGYTPQHW----EYHKHPITRFI 115 (192)
Q Consensus 83 vNvFiGpAeLaeIPEgY~P~hW----EY~kHPItR~i 115 (192)
-|-|||.+.+.---.|-+-+|| +--.+||.+|-
T Consensus 97 ~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh 133 (136)
T cd08405 97 RNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWH 133 (136)
T ss_pred CCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEE
Confidence 4678999997543347778899 77788888884
No 19
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.93 E-value=51 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=10.1
Q ss_pred HHhhhhhhHHHHhhhh
Q psy17066 68 YVMIGGLPCLAIIFVS 83 (192)
Q Consensus 68 Y~lLg~IPv~~~it~v 83 (192)
|+++|+| |+++|.++
T Consensus 1 y~~i~lv-vG~iiG~~ 15 (128)
T PF06295_consen 1 YAIIGLV-VGLIIGFL 15 (128)
T ss_pred ChHHHHH-HHHHHHHH
Confidence 6777777 66666654
Done!