Query psy17066
Match_columns 192
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 21:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dla_A 397AA long hypothetical 36.8 12 0.00042 31.9 1.4 16 59-74 58-73 (222)
2 3pjs_K KCSA, voltage-gated pot 28.5 1.2E+02 0.0042 23.1 5.8 36 125-160 129-164 (166)
3 1vf5_G Protein PET G; photosyn 26.7 22 0.00076 22.8 1.0 19 66-84 6-24 (37)
4 1q90_G Cytochrome B6F complex 21.9 50 0.0017 21.2 2.0 20 65-84 5-24 (37)
5 2qvt_A AVRL567-D; AVRL567-A, c 19.9 24 0.00082 28.3 0.2 38 68-112 10-47 (150)
6 1a93_B MAX protein, coiled coi 19.7 86 0.0029 19.7 2.7 22 132-153 12-33 (34)
7 4au1_A Precorrin-8X methylmuta 19.2 41 0.0014 28.7 1.5 40 122-161 28-68 (229)
8 3kdp_B Sodium/potassium-transp 18.1 61 0.0021 28.0 2.4 36 47-87 6-41 (286)
9 3kxy_T EXSE; type-three secret 17.5 56 0.0019 22.9 1.6 15 111-125 29-43 (66)
10 1ihs_I Hirutonin; hydrolase(se 17.1 19 0.00066 21.4 -0.7 12 89-100 9-20 (26)
No 1
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=36.78 E-value=12 Score=31.90 Aligned_cols=16 Identities=38% Similarity=0.862 Sum_probs=13.6
Q ss_pred HHhhhhHHHHHhhhhh
Q psy17066 59 DKFKDFFHFYVMIGGL 74 (192)
Q Consensus 59 ~rFkDllhFY~lLg~I 74 (192)
+-.+||+.||.+||+.
T Consensus 58 e~~kDL~~FYALLGAL 73 (222)
T 2dla_A 58 DNVMDLAQFYALLGAL 73 (222)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4469999999999976
No 2
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=28.48 E-value=1.2e+02 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy17066 125 EIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQ 160 (192)
Q Consensus 125 q~YEk~la~l~~E~eK~~lR~~E~eVr~lM~eRgDy 160 (192)
+..++....-..+.-..+++.+.+++.++.++.+..
T Consensus 129 ~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~~~ 164 (166)
T 3pjs_K 129 QQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDN 164 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444445566677777777776666554
No 3
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=26.72 E-value=22 Score=22.84 Aligned_cols=19 Identities=5% Similarity=-0.262 Sum_probs=12.8
Q ss_pred HHHHhhhhhhHHHHhhhhe
Q psy17066 66 HFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 66 hFY~lLg~IPv~~~it~vN 84 (192)
-|=++||.||+.+...+|.
T Consensus 6 L~GIVlGlipvtl~GLfv~ 24 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYA 24 (37)
T ss_dssp ---CHHHHHHHHHHHHTHH
T ss_pred hhhHHHhhHHHHHHHHHHH
Confidence 3456799999988777663
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=21.90 E-value=50 Score=21.16 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.2
Q ss_pred HHHHHhhhhhhHHHHhhhhe
Q psy17066 65 FHFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 65 lhFY~lLg~IPv~~~it~vN 84 (192)
+-|=++||.||+.+...+|.
T Consensus 5 lL~GIVlGlipvtlaGLfv~ 24 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVT 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHH
Confidence 44567899999998777663
No 5
>2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular replacement, plant disease resistance, , unknown function; 2.26A {Melampsora lini}
Probab=19.88 E-value=24 Score=28.25 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=8.6
Q ss_pred HHhhhhhhHHHHhhhheeeeecceeccCCCCCCCCcccccccchh
Q psy17066 68 YVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPIT 112 (192)
Q Consensus 68 Y~lLg~IPv~~~it~vNvFiGpAeLaeIPEgY~P~hWEY~kHPIt 112 (192)
|.+|.++-++-|-..-|| ||||+-.-|||. .||+||.+
T Consensus 10 yavlsivslggihame~v---paeltgv~e~~t----~f~r~~ta 47 (150)
T 2qvt_A 10 YAVLSIVSLGGIHAMEDV---PAELTGVSEGYT----RFYRSPTA 47 (150)
T ss_dssp ------------------------------CCE----EEESSTTC
T ss_pred eeeeEEeeccCeeehhcC---chhhcccchhhh----hhhcCCcc
Confidence 445554444444445565 999999999987 68888864
No 6
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=19.65 E-value=86 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17066 132 DRLYELDEIRKIQKVTNKIDKL 153 (192)
Q Consensus 132 a~l~~E~eK~~lR~~E~eVr~l 153 (192)
+.-+++..|++-..||.+|+.|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 4456888999999999999865
No 7
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=19.24 E-value=41 Score=28.65 Aligned_cols=40 Identities=5% Similarity=0.141 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCc
Q psy17066 122 SPQEIYEKKMDRLYELDEIRKIQKVTNKI-DKLMGERNDQQ 161 (192)
Q Consensus 122 sPqq~YEk~la~l~~E~eK~~lR~~E~eV-r~lM~eRgDy~ 161 (192)
+|++.|++-+++|+.|.....+-..|.+| +|+...=||.-
T Consensus 28 d~~~Ie~~SF~iI~~E~~~~~f~~~e~~Vv~R~IHatgDfe 68 (229)
T 4au1_A 28 DGAKIYVQSFATIRAEADLARFTPEEEVVVVRMIHAAGMVG 68 (229)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccChh
Confidence 69999999999999887666554455544 89999999986
No 8
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=18.09 E-value=61 Score=28.04 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=20.6
Q ss_pred ceeEecCCchhHHHhhhhHHHHHhhhhhhHHHHhhhheeee
Q psy17066 47 NHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFI 87 (192)
Q Consensus 47 r~f~IrPS~f~~~rFkDllhFY~lLg~IPv~~~it~vNvFi 87 (192)
.+|-.++++| -.++-||+++=++=++++++.+=||.
T Consensus 6 ~~lGRT~~sW-----~~IllFYliFY~~La~lFa~~m~v~l 41 (286)
T 3kdp_B 6 EFLGRTGGSW-----FKILLFYVIFYGCLAGIFIGTIQVML 41 (286)
T ss_dssp TTSCSSCSCC-----HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceeCccHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777 45566666544444555555555553
No 9
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=17.49 E-value=56 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=13.0
Q ss_pred hhHHHHhhcCCChHH
Q psy17066 111 ITRFIAKTCHTSPQE 125 (192)
Q Consensus 111 ItR~iARy~~~sPqq 125 (192)
+.||+||++-..|..
T Consensus 29 larwlarnvagdprs 43 (66)
T 3kxy_T 29 LARWLARNVAGDPRS 43 (66)
T ss_dssp HHHHHHHHTCCCTTH
T ss_pred HHHHHHHhccCCccH
Confidence 679999999999954
No 10
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=17.08 E-value=19 Score=21.43 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.2
Q ss_pred cceeccCCCCCC
Q psy17066 89 PATLTEIPEGYT 100 (192)
Q Consensus 89 pAeLaeIPEgY~ 100 (192)
.-...+|||.|.
T Consensus 9 ~gDFe~IPEeYl 20 (26)
T 1ihs_I 9 DGDFEEIPEEYL 20 (26)
T ss_pred CCCCCcCCHHHH
Confidence 445678888774
Done!