Query psy17066
Match_columns 192
No_of_seqs 78 out of 80
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 21:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17066.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17066hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 47.5 3.8 0.00028 23.8 1.4 19 66-84 6-24 (30)
2 d1uowa_ b.7.1.2 (A:) Synaptoga 20.6 5.5 0.0004 28.1 -1.4 46 83-132 107-156 (157)
3 d1w15a_ b.7.1.2 (A:) Synaptota 19.9 5.8 0.00042 27.2 -1.4 32 83-114 97-132 (138)
4 d4htci_ g.3.15.2 (I:) Hirudin 14.4 20 0.0014 23.7 0.3 13 88-100 52-64 (65)
5 d2gtaa1 a.204.1.2 (A:1-98) Hyp 11.7 86 0.0063 20.6 3.1 41 143-188 6-46 (98)
6 d1f2va_ c.23.17.1 (A:) Precorr 10.3 42 0.0031 26.0 1.1 42 120-161 6-48 (209)
7 d1u00a2 b.130.1.1 (A:389-503) 10.1 60 0.0044 22.2 1.8 19 81-99 57-75 (115)
8 d1x4ta1 a.2.15.1 (A:7-86) Pre- 9.9 59 0.0043 22.0 1.7 18 141-158 46-63 (80)
9 d2vcha1 c.87.1.10 (A:6-476) Hy 9.7 1.2E+02 0.0085 22.4 3.5 37 122-158 410-449 (471)
10 d2cm5a1 b.7.1.2 (A:541-677) C2 8.7 15 0.0011 24.6 -2.0 31 84-114 98-132 (137)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=47.51 E-value=3.8 Score=23.78 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=14.4
Q ss_pred HHHHhhhhhhHHHHhhhhe
Q psy17066 66 HFYVMIGGLPCLAIIFVSN 84 (192)
Q Consensus 66 hFY~lLg~IPv~~~it~vN 84 (192)
-+=++||.||+.+...||.
T Consensus 6 l~GivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHH
Confidence 3446799999998877764
No 2
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.62 E-value=5.5 Score=28.07 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=27.8
Q ss_pred heeeeecceeccCCCCCCCCccc----ccccchhHHHHhhcCCChHHHHHHHHH
Q psy17066 83 SNVFIGPATLTEIPEGYTPQHWE----YHKHPITRFIAKTCHTSPQEIYEKKMD 132 (192)
Q Consensus 83 vNvFiGpAeLaeIPEgY~P~hWE----Y~kHPItR~iARy~~~sPqq~YEk~la 132 (192)
-|.|||.+.+.--.-+-+-+||. --+-||++| |-..+| .+.|+.|+
T Consensus 107 ~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~W---h~L~~~-~~~~~~l~ 156 (157)
T d1uowa_ 107 KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW---HTLQVE-EEVDAMLA 156 (157)
T ss_dssp CCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEE---EECBCH-HHHHHHHC
T ss_pred CCceeEEEEEecccCChhHHHHHHHHhCCCCceeEe---EeCCCC-cccccccc
Confidence 37899999886543344456776 234567777 223344 44677665
No 3
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.85 E-value=5.8 Score=27.16 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=21.0
Q ss_pred heeeeecceeccCCCCCCCCcccc----cccchhHH
Q psy17066 83 SNVFIGPATLTEIPEGYTPQHWEY----HKHPITRF 114 (192)
Q Consensus 83 vNvFiGpAeLaeIPEgY~P~hWEY----~kHPItR~ 114 (192)
-|.|||.+.+.---.+-..+||.- -..||.+|
T Consensus 97 ~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~W 132 (138)
T d1w15a_ 97 RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKW 132 (138)
T ss_dssp CCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEE
T ss_pred CCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeEC
Confidence 478999999853323334578842 35778777
No 4
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=14.43 E-value=20 Score=23.72 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=8.7
Q ss_pred ecceeccCCCCCC
Q psy17066 88 GPATLTEIPEGYT 100 (192)
Q Consensus 88 GpAeLaeIPEgY~ 100 (192)
|+-...||||.|.
T Consensus 52 ~~gDFeeIPeeyl 64 (65)
T d4htci_ 52 NNGDFEEIPEEYL 64 (65)
T ss_dssp CCCCCCCCCGGGC
T ss_pred CCCCcccCcHHhc
Confidence 4556677887774
No 5
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus subtilis [TaxId: 1423]}
Probab=11.67 E-value=86 Score=20.60 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcCCCcceeeeecccchhhhhHHHHHhhhhhhc
Q psy17066 143 IQKVTNKIDKLMGERNDQQVYYYKPVHTNHFTSREKEAEEFRDVVS 188 (192)
Q Consensus 143 lR~~E~eVr~lM~eRgDy~~~yY~p~~~k~l~r~~ke~~~~~~~~~ 188 (192)
+..++++|++...+|+ |-||.|-. .+....-|+.|..+.++
T Consensus 6 l~elq~~v~~f~~~r~---w~~~~p~~--~l~~l~~E~GElae~~~ 46 (98)
T d2gtaa1 6 MKDIQAEVDRYIGQFK---EGYFSPLA--MMARLTEELGELAREVN 46 (98)
T ss_dssp HHHHHHHHHHHHTTSS---SCSCCHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCcCCHHH--HHHHHHHHHHHHHHHHH
Confidence 5567888999888886 33454532 33356677777766553
No 6
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=10.26 E-value=42 Score=26.03 Aligned_cols=42 Identities=7% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCc
Q psy17066 120 HTSPQEIYEKKMDRLYELDEIRKIQKVTNKI-DKLMGERNDQQ 161 (192)
Q Consensus 120 ~~sPqq~YEk~la~l~~E~eK~~lR~~E~eV-r~lM~eRgDy~ 161 (192)
..+|++.|++-+.+++.|-....+-..|.+| +|+...=||.-
T Consensus 6 ~~dp~~I~~~Sf~iI~~e~~~~~~~~~e~~Vv~R~IHatgD~e 48 (209)
T d1f2va_ 6 IRDGNAIYERSFAIIRAEADLSRFSEEEADLAVRMVHACGSVE 48 (209)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHHHHHSCGG
T ss_pred ccCHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhccccChh
Confidence 3479999999999999887776666666666 79999999975
No 7
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=10.12 E-value=60 Score=22.22 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=15.8
Q ss_pred hhheeeeecceeccCCCCC
Q psy17066 81 FVSNVFIGPATLTEIPEGY 99 (192)
Q Consensus 81 t~vNvFiGpAeLaeIPEgY 99 (192)
.--|.++|..+|..||...
T Consensus 57 ~~~N~~lg~~~l~~ip~~p 75 (115)
T d1u00a2 57 VQDCRSLARFALRGIPALP 75 (115)
T ss_dssp GGGSEEEEEEEECCCCCCS
T ss_pred cccceEeeEEEEeCcccCc
Confidence 3479999999999998764
No 8
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.92 E-value=59 Score=22.04 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy17066 141 RKIQKVTNKIDKLMGERN 158 (192)
Q Consensus 141 ~~lR~~E~eVr~lM~eRg 158 (192)
.++|.+-++|.+||+|++
T Consensus 46 ~~IRdLNDeINkL~reK~ 63 (80)
T d1x4ta1 46 FRIRDLNDEINKLLREKG 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999999999985
No 9
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.73 E-value=1.2e+02 Score=22.42 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcC
Q psy17066 122 SPQEIYEKKMDRLYEL---DEIRKIQKVTNKIDKLMGERN 158 (192)
Q Consensus 122 sPqq~YEk~la~l~~E---~eK~~lR~~E~eVr~lM~eRg 158 (192)
+.++..+..-..|..| +-+++.+.+-+++++-|.|=|
T Consensus 410 t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~~a~~~gG 449 (471)
T d2vcha1 410 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDG 449 (471)
T ss_dssp CHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6677777766777554 355666666677777777655
No 10
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.72 E-value=15 Score=24.55 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=0.0
Q ss_pred eeeeecceeccCCCCCCCCccc----ccccchhHH
Q psy17066 84 NVFIGPATLTEIPEGYTPQHWE----YHKHPITRF 114 (192)
Q Consensus 84 NvFiGpAeLaeIPEgY~P~hWE----Y~kHPItR~ 114 (192)
|.|||.+++.--.-+-..+||- --.+||++|
T Consensus 98 ~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~W 132 (137)
T d2cm5a1 98 NDYIGGCQLGISAKGERLKHWYECLKNKDKKIERW 132 (137)
T ss_dssp CEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEc
Done!