RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17066
(192 letters)
>gnl|CDD|220397 pfam09781, NDUF_B5, NADH:ubiquinone oxidoreductase, NDUFB5/SGDH
subunit. Members of this family mediate the transfer of
electrons from NADH to the respiratory chain. The
immediate electron acceptor for the enzyme is believed
to be ubiquinone, the reaction that occurs being: NADH +
ubiquinone = NAD(+) + ubiquinol.
Length = 182
Score = 178 bits (453), Expect = 2e-57
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 43 GGH-DNHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTP 101
GH F+IKPS++ +F D HFY+++ G+P A I NVFIGPA L EIPEGY P
Sbjct: 41 PGHGKKMFTIKPSRFYDHRFLDLLHFYILLTGIPVAAFITYVNVFIGPAELAEIPEGYEP 100
Query: 102 QHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQ 161
+HWEY+KHPITR+IA+ + SPQ+ YEK + + E +E +I+ + ++ +LM ER D
Sbjct: 101 EHWEYYKHPITRWIARYVYDSPQKEYEKMLALIQEENEKAEIRLLELEVRRLMRERGDGP 160
Query: 162 VYYYKPV 168
YYY+ +
Sbjct: 161 WYYYRTI 167
>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional.
Length = 679
Score = 34.8 bits (80), Expect = 0.021
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 106 YHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYYY 165
Y K P+ ++ T + I + + D++RK+ KV D++ E
Sbjct: 441 YSKRPLPEWVLNDLKTRIRSIPGAHLHFITGRDQLRKLAKVIYLADRIRTEH-------- 492
Query: 166 KPVHTNHFTS----REKEAEEFRD 185
+ +H HFTS KEA + RD
Sbjct: 493 QGLH-EHFTSMIRFNMKEALQKRD 515
>gnl|CDD|217143 pfam02614, UxaC, Glucuronate isomerase. This is a family of
Glucuronate isomerases also known as D-glucuronate
isomerase, uronic isomerase, uronate isomerase, or
uronic acid isomerase, EC:5.3.1.12. This enzyme
catalyzes the reactions: D-glucuronate <=>
D-fructuronate and D-galacturonate <=> D-tagaturonate.
It is not however clear where the experimental evidence
for this functional assignment came from and thus this
family has no literature reference.
Length = 469
Score = 30.3 bits (69), Expect = 0.59
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 106 YHKH----PITRFIAKTCHTSPQEIYE-KKMDRLYEL 137
YH H PI I CH P+EI E K+ + + E+
Sbjct: 20 YHDHAKDLPI---IDYHCHLDPKEIAENKRFENITEI 53
>gnl|CDD|133007 cd02514, GT13_GLCNAC-TI, GT13_GLCNAC-TI is involved in an essential
step in the synthesis of complex or hybrid-type N-linked
oligosaccharides. Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I ,
GNT-I) transfers N-acetyl-D-glucosamine from UDP to
high-mannose glycoprotein N-oligosaccharide, an
essential step in the synthesis of complex or
hybrid-type N-linked oligosaccharides. The enzyme is an
integral membrane protein localized to the Golgi
apparatus. The catalytic domain is located at the
C-terminus. These proteins are members of the glycosy
transferase family 13.
Length = 334
Score = 29.6 bits (67), Expect = 1.0
Identities = 9/64 (14%), Positives = 23/64 (35%)
Query: 124 QEIYEKKMDRLYELDEIRKIQKVTNKIDKLMGERNDQQVYYYKPVHTNHFTSREKEAEEF 183
++ Y+K+ RL + +K ++ + +V Y + ++
Sbjct: 246 KDNYDKEFHRLVYGAVVLDHEKNPCELSFVPDTEGKVRVVYTGRDDFKTWAKAFGVMDDL 305
Query: 184 RDVV 187
+D V
Sbjct: 306 KDGV 309
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 29.4 bits (67), Expect = 1.1
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 80 IFVSNVFIGPATLTEIPEGYTPQHWEYHKHPITRFIAKTCHT 121
+F+ N + + I E Y +TR++ C
Sbjct: 232 VFICNSLMPVWPVRAIGE------TSYSSGTLTRYLQPLCER 267
>gnl|CDD|224816 COG1904, UxaC, Glucuronate isomerase [Carbohydrate transport and
metabolism].
Length = 463
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 106 YHKH----PITRFIAKTCHTSPQEIYEKK 130
H + PI I CH PQEI E +
Sbjct: 18 LHAYVKDLPI---IDPHCHLEPQEIAENE 43
>gnl|CDD|222724 pfam14385, DUF4416, Domain of unknown function (DUF4416). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 176 and 187 amino
acids in length. There is a conserved DPG sequence
motif.
Length = 163
Score = 27.2 bits (61), Expect = 4.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 131 MDRLYELDEIRKIQKVTNKIDKLMGERNDQQV 162
+RL +E+ I+ TN+I+ E ++V
Sbjct: 63 FERLIHPEELADIKLETNEIEDAFAEDGKRKV 94
>gnl|CDD|177239 MTH00191, CYTB, cytochrome b; Provisional.
Length = 365
Score = 27.2 bits (61), Expect = 5.6
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 50 SIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTP 101
S K + +KD F++++ + + V P L + PE + P
Sbjct: 212 SDKIPFHPYFSYKDILGFFILL-------FLLLFLVLFSPNLLGD-PENFIP 255
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.0 bits (60), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 125 EIYEKKMDRLYELD--------EIRKIQKVTNKIDKLMGER 157
E YE+ +R EL K+ +V ++DK ER
Sbjct: 970 EEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.420
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,741,916
Number of extensions: 889184
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 18
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)