RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17066
         (192 letters)



>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 313

 Score = 27.8 bits (62), Expect = 0.76
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 49  FSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSN 84
           FS  P     ++   + HFY M   L CL  +FVS 
Sbjct: 221 FSSCPLNSD-EEVNKWLHFYEMKAPLVCLP-VFVSR 254


>d1pn2a1 d.38.1.4 (A:4-151) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Yeast (Candida
           tropicalis) [TaxId: 5482]}
          Length = 148

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 7/64 (10%)

Query: 74  LPCLAIIFVSNVFIGPATLTEIPEGYTP-------QHWEYHKHPITRFIAKTCHTSPQEI 126
           +P    +   N      +  ++   + P        + + H  P            P   
Sbjct: 38  IPTFGHLITFNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIAT 97

Query: 127 YEKK 130
             K 
Sbjct: 98  TPKG 101


>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 87

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 109 HPITRFIAKTCHTSPQEIYEK 129
           H I R+ A+      +E+Y+ 
Sbjct: 20  HSILRYCAEKFQIPLEELYKT 40


>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 453

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 98  GYTPQHWEYHKHPITRFIAKTCHTSPQEIYEKKMDRLYELDE 139
           G  P+ + +      +   K    +P E Y + +  L+ +++
Sbjct: 224 GNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMED 265


>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
           N-terminal 'additional' domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 96

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 115 IAKTCHTSPQEIYEKKMDRLYELDEIRKIQ 144
           +AK     PQ I ++  DRL   + + +  
Sbjct: 43  LAKELRKPPQAIAQELKDRLPLPEFVEEAV 72


>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma)
           subunit {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 25.8 bits (56), Expect = 3.4
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 53  PSQWQWDKFKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKHPI 111
               Q  ++    H    I  L    +I +   F    ++  + EG   + W    HP 
Sbjct: 141 YFPMQVVRYSLLIHAAAGII-LIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPR 198


>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
           globisporus [TaxId: 1459]}
          Length = 182

 Score = 25.6 bits (55), Expect = 3.7
 Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 45  HDNHFSIKPSQWQWDKFKDFFHFYVMIGGLPCLAIIFV---SNVFIGPATLTEIPEGYTP 101
                 ++    + D    F             A+  +       I      ++ +    
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121

Query: 102 QHWEYHKHPIT---RFIAKTCHTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
                  +P T   R       T+P   +    + L  ++  + I+ V   +D ++
Sbjct: 122 ARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177


>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 194

 Score = 25.7 bits (55), Expect = 3.8
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 120 HTSPQEIYEKKMDRLYELDEIRKIQKVTNKIDKLM 154
            T     +  K D++  +   R + +V N ++ L 
Sbjct: 155 QTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 189


>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
           2287]}
          Length = 91

 Score = 24.2 bits (53), Expect = 4.6
 Identities = 4/28 (14%), Positives = 12/28 (42%)

Query: 109 HPITRFIAKTCHTSPQEIYEKKMDRLYE 136
             I   +++    S ++ +E+   +L  
Sbjct: 20  DKILELVSQKLKLSEKDAWEQVAWKLEA 47


>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 221

 Score = 24.8 bits (53), Expect = 6.4
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 63  DFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTPQHWEYHKH 109
           ++ H  VM          FV N+  GP  +  + +      ++ H  
Sbjct: 30  EWIHLDVMDM-------HFVPNLSFGPPVINNLKKYTKSIFFDVHLM 69


>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 24.3 bits (53), Expect = 9.4
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 8/41 (19%)

Query: 61  FKDFFHFYVMIGGLPCLAIIFVSNVFIGPATLTEIPEGYTP 101
            KD     ++I       +  +  V   P  L + P+ YTP
Sbjct: 212 IKDILGALLLI-------LALMLLVLFAPDLLGD-PDNYTP 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0385    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,703
Number of extensions: 36314
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 16
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)