BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17068
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis
 pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis
 pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis
 pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis
 pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To The Product Mimic Malonate
 pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To The Product Mimic Malonate
 pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To The Product Mimic Malonate
 pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To The Product Mimic Malonate
 pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To Magnesium Isocitrate
 pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To Magnesium Isocitrate
 pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To Magnesium Isocitrate
 pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis, Bound To Magnesium Isocitrate
          Length = 433

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 50  GYHNQNRGYRNQIRGYRDQNHGYREQNRGYRE-QNRGYRDHNRGYREQKRGYREQNRGYR 108
           G+H  N G     RGY+D+      Q   Y E Q   +     GY   K   RE   GY 
Sbjct: 350 GFHQLNYGMFELARGYKDR------QMAAYSELQQAEFAAEADGYTATKH-QREVGTGYF 402

Query: 109 DQNADIAIKTADTANKSAVNANNIKENS 136
           D     A+  A T  +S+  A  +KE++
Sbjct: 403 D-----AVSLAITGGQSSTTA--MKEST 423


>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis (P43212)
 pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
           Melitensis (P43212)
          Length = 433

 Score = 28.1 bits (61), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 50  GYHNQNRGYRNQIRGYRDQNHGYREQNRGYRE-QNRGYRDHNRGYREQKRGYREQNRGYR 108
           G+H  N G     RGY+D+      Q   Y E Q   +     GY   K   RE   GY 
Sbjct: 350 GFHQLNYGMFELARGYKDR------QMAAYSELQQAEFAAEADGYTATKH-QREVGTGYF 402

Query: 109 DQNADIAIKTADTANKSAVNANNIKENS 136
           D     A+  A T  +S+  A  +KE++
Sbjct: 403 D-----AVSLAITGGQSSTTA--MKEST 423


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,096,578
Number of Sequences: 62578
Number of extensions: 217296
Number of successful extensions: 358
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 13
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)